0.015858 0.009156 0.000000 0.000000 0.018311 0.000000 0.000000 0.000000 0.011988 0.00000 0.00000 0.00000 Kumar, M. Kannan, K.K. Hosur, M.V. Bhavesh, N.S. Chatterjee, A. Mittal, R. Hosur, R.V. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 63.060 63.060 83.420 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochem.Biophys.Res.Commun. BBRCA9 0146 0006-291X 294 395 401 10.1016/S0006-291X(02)00482-5 12051725 Effects of remote mutation on the autolysis of HIV-1 PR: X-ray and NMR investigations. 2002 10.2210/pdb1lv1/pdb pdb_00001lv1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 295 1 Totally reflecting MSC mirrors IMAGE PLATE 2001-01-01 RIGAKU RAXIS IIC YALE MIRRORS SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200HB Tethered dimer linked by GGSSG 21902.760 HIV-1 protease 3.4.23.16 C95M/C1095A 1 man polymer 18.015 water 55 nat water no no PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGMTLNFGGSSGPQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKV RQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGATLNF PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGMTLNFGGSSGPQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKV RQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGATLNF A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia Escherichia coli sample 1 99 11676 Human immunodeficiency virus 1 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pET11a Lentivirus Escherichia Escherichia coli sample 105 203 11676 Human immunodeficiency virus 1 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pET11a 1 2.18 43.70 VAPOR DIFFUSION, HANGING DROP 6.2 5% saturated ammonium sulfate, 200mM sodium phosphate, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 295K 295 entity_src_gen software database_2 struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Refinement description Source and taxonomy Database references 1 0 2002-06-19 1 1 2008-04-28 1 2 2011-07-13 1 3 2017-08-16 1 4 2021-11-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details 1G6L contains the tethered HIV-1 protease carrying the single mutation C95M on one subunit only. RCSB Y PDBJ 2002-05-24 REL REL HOH water WAT 401 2 HOH HOH 401 A WAT 402 2 HOH HOH 402 A WAT 403 2 HOH HOH 403 A WAT 404 2 HOH HOH 404 A WAT 405 2 HOH HOH 405 A WAT 406 2 HOH HOH 406 A WAT 407 2 HOH HOH 407 A WAT 408 2 HOH HOH 408 A WAT 409 2 HOH HOH 409 A WAT 410 2 HOH HOH 410 A WAT 411 2 HOH HOH 411 A WAT 412 2 HOH HOH 412 A WAT 413 2 HOH HOH 413 A WAT 414 2 HOH HOH 414 A WAT 415 2 HOH HOH 415 A WAT 416 2 HOH HOH 416 A WAT 417 2 HOH HOH 417 A WAT 418 2 HOH HOH 418 A WAT 419 2 HOH HOH 419 A WAT 420 2 HOH HOH 420 A WAT 421 2 HOH HOH 421 A WAT 422 2 HOH HOH 422 A WAT 423 2 HOH HOH 423 A WAT 424 2 HOH HOH 424 A WAT 425 2 HOH HOH 425 A WAT 426 2 HOH HOH 426 A WAT 427 2 HOH HOH 427 A WAT 428 2 HOH HOH 428 A WAT 429 2 HOH HOH 429 A WAT 430 2 HOH HOH 430 A WAT 431 2 HOH HOH 431 A WAT 432 2 HOH HOH 432 A WAT 433 2 HOH HOH 433 A WAT 434 2 HOH HOH 434 A WAT 435 2 HOH HOH 435 A WAT 436 2 HOH HOH 436 A WAT 437 2 HOH HOH 437 A WAT 438 2 HOH HOH 438 A WAT 439 2 HOH HOH 439 A WAT 440 2 HOH HOH 440 A WAT 441 2 HOH HOH 441 A WAT 442 2 HOH HOH 442 A WAT 443 2 HOH HOH 443 A WAT 444 2 HOH HOH 444 A WAT 445 2 HOH HOH 445 A WAT 446 2 HOH HOH 446 A WAT 447 2 HOH HOH 447 A WAT 448 2 HOH HOH 448 A WAT 449 2 HOH HOH 449 A WAT 450 2 HOH HOH 450 A WAT 451 2 HOH HOH 451 A WAT 452 2 HOH HOH 452 A WAT 453 2 HOH HOH 453 A WAT 454 2 HOH HOH 454 A WAT 455 2 HOH HOH 455 A PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A VAL 3 n 3 VAL 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A GLN 7 n 7 GLN 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A SER 37 n 37 SER 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A LEU 63 n 63 LEU 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A MET 95 n 95 MET 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A n 100 996 A n 101 997 A n 102 998 A n 103 999 A n 104 1000 A PRO 1001 n 105 PRO 1001 A GLN 1002 n 106 GLN 1002 A VAL 1003 n 107 VAL 1003 A THR 1004 n 108 THR 1004 A LEU 1005 n 109 LEU 1005 A TRP 1006 n 110 TRP 1006 A GLN 1007 n 111 GLN 1007 A ARG 1008 n 112 ARG 1008 A PRO 1009 n 113 PRO 1009 A LEU 1010 n 114 LEU 1010 A VAL 1011 n 115 VAL 1011 A THR 1012 n 116 THR 1012 A ILE 1013 n 117 ILE 1013 A LYS 1014 n 118 LYS 1014 A ILE 1015 n 119 ILE 1015 A GLY 1016 n 120 GLY 1016 A GLY 1017 n 121 GLY 1017 A GLN 1018 n 122 GLN 1018 A LEU 1019 n 123 LEU 1019 A LYS 1020 n 124 LYS 1020 A GLU 1021 n 125 GLU 1021 A ALA 1022 n 126 ALA 1022 A LEU 1023 n 127 LEU 1023 A LEU 1024 n 128 LEU 1024 A ASP 1025 n 129 ASP 1025 A THR 1026 n 130 THR 1026 A GLY 1027 n 131 GLY 1027 A ALA 1028 n 132 ALA 1028 A ASP 1029 n 133 ASP 1029 A ASP 1030 n 134 ASP 1030 A THR 1031 n 135 THR 1031 A VAL 1032 n 136 VAL 1032 A LEU 1033 n 137 LEU 1033 A GLU 1034 n 138 GLU 1034 A GLU 1035 n 139 GLU 1035 A MET 1036 n 140 MET 1036 A SER 1037 n 141 SER 1037 A LEU 1038 n 142 LEU 1038 A PRO 1039 n 143 PRO 1039 A GLY 1040 n 144 GLY 1040 A ARG 1041 n 145 ARG 1041 A TRP 1042 n 146 TRP 1042 A LYS 1043 n 147 LYS 1043 A PRO 1044 n 148 PRO 1044 A LYS 1045 n 149 LYS 1045 A MET 1046 n 150 MET 1046 A ILE 1047 n 151 ILE 1047 A GLY 1048 n 152 GLY 1048 A GLY 1049 n 153 GLY 1049 A ILE 1050 n 154 ILE 1050 A GLY 1051 n 155 GLY 1051 A GLY 1052 n 156 GLY 1052 A PHE 1053 n 157 PHE 1053 A ILE 1054 n 158 ILE 1054 A LYS 1055 n 159 LYS 1055 A VAL 1056 n 160 VAL 1056 A ARG 1057 n 161 ARG 1057 A GLN 1058 n 162 GLN 1058 A TYR 1059 n 163 TYR 1059 A ASP 1060 n 164 ASP 1060 A GLN 1061 n 165 GLN 1061 A ILE 1062 n 166 ILE 1062 A LEU 1063 n 167 LEU 1063 A ILE 1064 n 168 ILE 1064 A GLU 1065 n 169 GLU 1065 A ILE 1066 n 170 ILE 1066 A CYS 1067 n 171 CYS 1067 A GLY 1068 n 172 GLY 1068 A HIS 1069 n 173 HIS 1069 A LYS 1070 n 174 LYS 1070 A ALA 1071 n 175 ALA 1071 A ILE 1072 n 176 ILE 1072 A GLY 1073 n 177 GLY 1073 A THR 1074 n 178 THR 1074 A VAL 1075 n 179 VAL 1075 A LEU 1076 n 180 LEU 1076 A VAL 1077 n 181 VAL 1077 A GLY 1078 n 182 GLY 1078 A PRO 1079 n 183 PRO 1079 A THR 1080 n 184 THR 1080 A PRO 1081 n 185 PRO 1081 A VAL 1082 n 186 VAL 1082 A ASN 1083 n 187 ASN 1083 A ILE 1084 n 188 ILE 1084 A ILE 1085 n 189 ILE 1085 A GLY 1086 n 190 GLY 1086 A ARG 1087 n 191 ARG 1087 A ASN 1088 n 192 ASN 1088 A LEU 1089 n 193 LEU 1089 A LEU 1090 n 194 LEU 1090 A THR 1091 n 195 THR 1091 A GLN 1092 n 196 GLN 1092 A ILE 1093 n 197 ILE 1093 A GLY 1094 n 198 GLY 1094 A ALA 1095 n 199 ALA 1095 A THR 1096 n 200 THR 1096 A LEU 1097 n 201 LEU 1097 A ASN 1098 n 202 ASN 1098 A PHE 1099 n 203 PHE 1099 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 3 A N VAL 3 A O LEU 1097 A O LEU 201 A O ASN 1098 A O ASN 202 A N THR 96 A N THR 96 A O LEU 97 A O LEU 97 A N VAL 1003 A N VAL 107 A N GLY 49 A N GLY 49 A O GLY 52 A O GLY 52 A N GLU 65 A N GLU 65 A O LYS 14 A O LYS 14 A N ILE 15 A N ILE 15 A O GLN 18 A O GLN 18 A O LEU 23 A O LEU 23 A N ILE 85 A N ILE 85 A N ILE 84 A N ILE 84 A O VAL 32 A O VAL 32 A N LEU 33 A N LEU 33 A O LEU 76 A O LEU 76 A O VAL 77 A O VAL 77 A N ARG 57 A N ARG 57 A N GLY 1049 A N GLY 153 A O GLY 1052 A O GLY 156 A N GLU 1065 A N GLU 169 A O LYS 1014 A O LYS 118 A N ILE 1015 A N ILE 119 A O GLN 1018 A O GLN 122 A O LEU 1023 A O LEU 127 A N ILE 1085 A N ILE 189 A N ILE 1084 A N ILE 188 A O VAL 1032 A O VAL 136 A N LEU 1033 A N LEU 137 A O LEU 1076 A O LEU 180 A O VAL 1077 A O VAL 181 A N ARG 1057 A N ARG 161 1 A GLY 996 A GLY 100 1 Y 1 A GLY 997 A GLY 101 1 Y 1 A SER 998 A SER 102 1 Y 1 A SER 999 A SER 103 1 Y 1 A GLY 1000 A GLY 104 1 Y 1 A CYS 1067 33.94 43.63 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP 39.7 0.95 6.10 0.00 0.95 0.00 -1.91 0.2600000 0.013 0.1940000 0.1940000 2.10 14.75 428 11676 8047 5.3 73.3 RANDOM 319647.95 0.000000 1 RESTRAINED THROUGHOUT 1.0 MOLECULAR REPLACEMENT Engh & Huber FLAT MODEL 53.9922 0.326686 0.33 0.25 8.0 0.36 0.27 2.10 14.75 55 1568 0 0 1513 0.007 1.4 26.2 0.81 1.49 1.50 2.43 2.00 2.30 2.00 3.38 2.50 0.3920000 0.072 0.2910000 2.20 30 610 8 4.7 47.1 34.7 2.1 15.0 1LV1 51200 11676 2.0 1.0 0.0710000 1 10.1 93.1 2.1 2.2 47.0 refinement CNS data reduction DENZO data scaling SCALEPACK phasing CNS Crystal Structure Analysis of the non-active site mutant of tethered HIV-1 protease to 2.1A resolution 1 N N 2 N N A GLY 86 A GLY 86 HELX_P A THR 91 A THR 91 1 1 6 A GLN 92 A GLN 92 HELX_P A GLY 94 A GLY 94 5 2 3 A GLY 1086 A GLY 190 HELX_P A THR 1091 A THR 195 1 3 6 A GLN 1092 A GLN 196 HELX_P A GLY 1094 A GLY 198 5 4 3 HYDROLASE beta-ribbon flap, Hydrolase POL_HV1H2 UNP 1 1 P04585 57 155 1LV1 1 99 P04585 A 1 1 99 57 155 1LV1 1001 1099 P04585 A 1 105 203 1 CYS engineered mutation MET 95 1LV1 A P04585 UNP 151 95 1 linker GLY 996 1LV1 A P04585 UNP 100 1 linker GLY 997 1LV1 A P04585 UNP 101 1 linker SER 998 1LV1 A P04585 UNP 102 1 linker SER 999 1LV1 A P04585 UNP 103 1 linker GLY 1000 1LV1 A P04585 UNP 104 1 CYS engineered mutation ALA 1095 1LV1 A P04585 UNP 151 199 4 8 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel A GLN 2 A GLN 2 A VAL 3 A VAL 3 A THR 1096 A THR 200 A ASN 1098 A ASN 202 A THR 96 A THR 96 A ASN 98 A ASN 98 A GLN 1002 A GLN 106 A THR 1004 A THR 108 A LYS 43 A LYS 43 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A ILE 84 A ILE 84 A ILE 85 A ILE 85 A VAL 32 A VAL 32 A LEU 33 A LEU 33 A HIS 69 A HIS 69 A VAL 77 A VAL 77 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A LYS 1043 A LYS 147 A GLY 1049 A GLY 153 A GLY 1052 A GLY 156 A ILE 1066 A ILE 170 A LEU 1010 A LEU 114 A ILE 1015 A ILE 119 A GLN 1018 A GLN 122 A LEU 1024 A LEU 128 A ILE 1084 A ILE 188 A ILE 1085 A ILE 189 A VAL 1032 A VAL 136 A LEU 1033 A LEU 137 A HIS 1069 A HIS 173 A VAL 1077 A VAL 181 A GLY 1052 A GLY 156 A ILE 1066 A ILE 170 169 P 61