0.010907
0.006297
0.000000
0.000000
0.012595
0.000000
0.000000
0.000000
0.005260
0.00000
0.00000
0.00000
Johnson, S.J.
Taylor, J.S.
Beese, L.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
91.681
91.681
190.116
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C9 H16 N3 O13 P3
467.157
2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
non-polymer
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
Mn 2
54.938
MANGANESE (II) ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
N
C
N
160
N
N
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
N
N
166
R
C
N
167
N
C
N
168
S
C
N
169
R
C
N
170
N
O
N
171
N
O
N
172
N
C
N
173
N
O
N
174
R
P
N
175
N
O
N
176
N
O
N
177
N
O
N
178
S
P
N
179
N
O
N
180
N
O
N
181
N
O
N
182
N
P
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
O
N
203
N
P
N
204
N
O
N
205
N
O
N
206
N
O
N
207
N
C
N
208
R
C
N
209
N
O
N
210
S
C
N
211
N
O
N
212
N
C
N
213
R
C
Y
214
N
N
Y
215
N
C
Y
216
N
N
Y
217
N
C
N
218
N
C
N
219
N
O
N
220
N
N
N
221
N
C
N
222
N
N
N
223
N
N
Y
224
N
C
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
O
N
240
N
P
N
241
N
O
N
242
N
O
N
243
N
O
N
244
N
C
N
245
R
C
N
246
N
O
N
247
S
C
N
248
N
O
N
249
N
C
N
250
R
C
N
251
N
N
N
252
N
C
N
253
N
O
N
254
N
N
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
O
N
283
N
N
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
O
N
303
N
O
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
N
C
N
316
N
C
N
317
N
O
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
N
N
325
S
C
N
326
N
C
N
327
N
O
N
328
N
C
Y
329
N
C
Y
330
N
N
Y
331
N
C
Y
332
N
C
Y
333
N
N
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
S
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
N
375
N
C
N
376
N
C
N
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
N
397
N
C
N
398
N
C
N
399
N
C
N
400
N
N
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
N
422
N
C
N
423
N
S
N
424
N
C
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
MG
N
438
N
MN
N
439
N
N
N
440
S
C
N
441
N
C
N
442
N
O
N
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
N
450
N
O
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
N
N
463
S
C
N
464
N
C
N
465
N
O
N
466
N
C
N
467
N
C
N
468
N
C
N
469
N
O
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
N
N
480
S
C
N
481
N
C
N
482
N
O
N
483
N
C
N
484
N
O
N
485
N
O
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
S
N
494
N
O
N
495
N
O
N
496
N
O
N
497
N
O
N
498
N
N
N
499
S
C
N
500
N
C
N
501
N
O
N
502
R
C
N
503
N
O
N
504
N
C
N
505
N
O
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
N
N
516
S
C
N
517
N
C
N
518
N
O
N
519
N
C
Y
520
N
C
Y
521
N
C
Y
522
N
C
Y
523
N
N
Y
524
N
C
Y
525
N
C
Y
526
N
C
Y
527
N
C
Y
528
N
C
N
529
N
O
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
N
N
543
S
C
N
544
N
C
N
545
N
O
N
546
N
C
Y
547
N
C
Y
548
N
C
Y
549
N
C
Y
550
N
C
Y
551
N
C
Y
552
N
C
N
553
N
O
N
554
N
O
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
N
N
567
S
C
N
568
N
C
N
569
N
O
N
570
N
C
N
571
N
C
N
572
N
C
N
573
N
O
N
574
N
H
N
575
N
H
N
576
N
H
N
577
N
H
N
578
N
H
N
579
N
H
N
580
N
H
N
581
N
H
N
582
N
H
N
583
N
H
N
584
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
Y
224
N
sing
Y
225
N
sing
Y
226
N
doub
N
227
N
sing
Y
228
N
sing
N
229
N
sing
Y
230
N
doub
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
Y
334
N
sing
Y
335
N
doub
Y
336
N
doub
N
337
N
sing
Y
338
N
sing
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
doub
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
Y
442
N
doub
Y
443
N
sing
Y
444
N
sing
N
445
N
sing
Y
446
N
doub
N
447
N
sing
Y
448
N
doub
N
449
N
sing
Y
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
doub
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
doub
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
doub
N
485
N
doub
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
doub
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
doub
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
Y
515
N
doub
Y
516
N
sing
Y
517
N
sing
N
518
N
sing
Y
519
N
doub
Y
520
N
sing
Y
521
N
sing
N
522
N
sing
Y
523
N
sing
Y
524
N
doub
N
525
N
sing
Y
526
N
doub
N
527
N
sing
Y
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
doub
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
Y
543
N
doub
Y
544
N
sing
Y
545
N
sing
N
546
N
sing
Y
547
N
doub
N
548
N
sing
Y
549
N
doub
N
550
N
sing
Y
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
doub
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
100
3895
3900
10.1073/pnas.0630532100
12649320
Processive DNA synthesis observed in a polymerase crystal suggests a
mechanism for the prevention of frameshift mutations
2003
UK
Nature
NATUAS
0006
0028-0836
391
304
307
10.1038/34693
Visualizing DNA Replication in a Catalytically Active Bacillus DNA Polymerase Crystal
1998
UK
Structure
STRUE6
2005
0969-2126
5
95
108
10.1016/S0969-2126(97)00169-X
Crystal Structure of a Thermostable Bacillus DNA Polymerase I Large Fragment at 2.1 A Resolution
1997
10.2210/pdb1lv5/pdb
pdb_00001lv5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRROR
CCD
2001-03-29
ADSC QUANTUM 315
Si Crystal
SINGLE WAVELENGTH
M
x-ray
1
1.1
1.0
X25
NSLS
1.1
SYNCHROTRON
NSLS BEAMLINE X25
PRIMER STRAND
3094.043
5'-D(*GP*GP*AP*TP*CP*AP*GP*CP*GP*A)-3'
2
syn
polymer
Template Strand
4256.767
5'-D(*AP*CP*GP*TP*CP*GP*CP*TP*GP*AP*TP*CP*CP*G)-3'
2
syn
polymer
66128.836
DNA POLYMERASE I
2.7.7.7
BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT)
D329A
2
man
polymer
54.938
MANGANESE (II) ION
2
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
96.063
SULFATE ION
2
syn
non-polymer
467.157
2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
2
syn
non-polymer
18.015
water
186
nat
water
no
no
(DG)(DG)(DA)(DT)(DC)(DA)(DG)(DC)(DG)(DA)
GGATCAGCGA
C,E
polydeoxyribonucleotide
no
no
(DA)(DC)(DG)(DT)(DC)(DG)(DC)(DT)(DG)(DA)(DT)(DC)(DC)(DG)
ACGTCGCTGATCCG
D,F
polydeoxyribonucleotide
no
no
AKMAFTLADRVTEEMLADKAALVVEVVEENYHAAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRA
AVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWE
LERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGV
ILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRL
SSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDE
VTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDI
TSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV
TLRVPLKVDYHYGSTWYDAK
AKMAFTLADRVTEEMLADKAALVVEVVEENYHAAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRA
AVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWE
LERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGV
ILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRL
SSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDE
VTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDI
TSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV
TLRVPLKVDYHYGSTWYDAK
A,B
polypeptide(L)
n
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Geobacillus
Escherichia
sample
THIS PROTEIN WAS ISOLATED FROM AN AS YET UNNAMED NOVEL STRAIN OF BACILLUS STEAROTHERMOPHILUS (SEE REF 2).
1422
Geobacillus stearothermophilus
562
Escherichia coli
BL21(DE3)pLysS
Plasmid
pET-30A(+)
1
3.12
60.63
VAPOR DIFFUSION, HANGING DROP
5.80
AMMONIUM SULFATE, MAGNESIUM SULFATE, MPD, MES, MANGANESE SULFATE, pH 5.80, VAPOR DIFFUSION, HANGING DROP, temperature 290.0K
290.0
AMMONIUM SULFATE
1
MgSO4
1
MPD
1
MES
1
MnSo4
1
-10.302
1
19
C
20
D
13
1.870
C_DG20:DC13_D
1
-17.801
-0.374
0.505
0.220
-1.488
1
19
C
21
D
12
-1.855
C_DG21:DC12_D
2
-12.007
-0.513
0.404
-0.233
1.229
1
20
C
23
D
10
0.360
C_DT23:DA10_D
3
-14.626
-0.416
-0.357
-0.004
0.418
C
24
D
9
20.008
C_DC24:DG9_D
4
-29.392
0.402
0.160
0.951
-20.405
C
25
D
8
7.863
C_DA25:DT8_D
5
-13.867
0.077
0.232
0.489
3.272
1
19
C
26
D
7
6.061
C_DG26:DC7_D
6
9.442
0.825
0.350
0.262
-1.592
1
C
27
D
6
10.545
C_DC27:DG6_D
7
-1.446
0.950
0.809
-0.067
6.132
1
19
C
28
D
5
1.887
C_DG28:DC5_D
8
-1.813
-0.300
0.417
-0.295
-3.539
1
20
C
29
D
4
4.063
C_DA29:DT4_D
9
-0.369
-0.195
0.853
-0.411
-3.000
1
19
E
20
F
13
-3.020
E_DG20:DC13_F
10
-22.130
-1.069
0.221
-0.420
0.030
E
21
F
12
18.143
E_DG21:DC12_F
11
-1.861
-0.311
-0.031
1.068
9.169
E
22
F
11
10.694
E_DA22:DT11_F
12
-20.505
-0.185
0.413
0.267
8.707
E
23
F
10
10.482
E_DT23:DA10_F
13
-20.653
-1.053
-0.405
0.228
6.486
E
24
F
9
7.144
E_DC24:DG9_F
14
-9.354
0.701
-0.398
0.550
-11.777
1
20
E
25
F
8
3.914
E_DA25:DT8_F
15
-10.802
0.294
-0.546
-0.112
9.218
1
19
E
26
F
7
-3.644
E_DG26:DC7_F
16
2.745
-0.207
-0.514
-0.129
9.362
1
19
E
27
F
6
3.100
E_DC27:DG6_F
17
-11.339
0.024
-0.791
0.073
0.404
1
19
E
28
F
5
4.677
E_DG28:DC5_F
18
-15.631
-0.211
0.073
0.062
1.041
1
20
E
29
F
4
9.260
E_DA29:DT4_F
19
-19.814
-0.166
-0.459
0.074
2.419
32.179
C
C
20
21
24.365
D
D
13
12
2.993
13.088
-0.567
-0.938
CC_DG20DG21:DC12DC13_DD
1
-4.386
8.165
29.139
-3.729
0.341
6.556
74.628
C
C
21
23
0.959
D
D
12
10
6.585
1.162
-0.099
-0.231
CC_DG21DT23:DA10DC12_DD
2
6.320
-5.218
74.391
-0.263
0.475
3.516
37.181
C
C
23
24
-2.488
D
D
10
9
3.479
-1.586
1.380
-0.154
CC_DT23DC24:DG9DA10_DD
3
0.984
-1.545
37.135
-0.015
-2.024
3.445
34.651
C
C
24
25
16.800
D
D
9
8
3.567
9.875
0.350
0.075
CC_DC24DA25:DT8DG9_DD
4
-0.357
0.607
33.254
-1.536
-0.648
2.916
31.032
C
C
25
26
5.725
D
D
8
7
2.936
3.056
0.760
-0.501
CC_DA25DG26:DC7DT8_DD
5
1.983
-3.714
30.823
-1.464
-1.079
2.974
39.136
C
C
26
27
16.627
D
D
7
6
3.468
10.970
0.249
-1.132
CC_DG26DC27:DG6DC7_DD
6
-5.013
7.599
37.300
-3.020
-0.979
2.672
18.623
C
C
27
28
7.203
D
D
6
5
2.934
2.324
-0.788
-2.145
CC_DC27DG28:DC5DG6_DD
7
-0.643
1.993
18.467
-7.706
2.139
2.674
36.764
C
C
28
29
20.872
D
D
5
4
3.451
12.898
-0.019
-1.672
CC_DG28DA29:DT4DC5_DD
8
-1.694
2.742
34.460
-4.354
-0.193
3.409
46.054
E
E
20
21
-13.881
F
F
13
12
3.544
-10.748
1.384
0.794
EE_DG20DG21:DC12DC13_FF
9
5.234
-6.760
44.557
2.015
-1.283
3.460
34.053
E
E
21
22
13.768
F
F
12
11
3.089
7.901
-1.699
0.539
EE_DG21DA22:DT11DC12_FF
10
-8.959
15.611
31.948
-0.382
1.425
3.237
35.006
E
E
22
23
-0.103
F
F
11
10
3.253
-0.062
-0.173
-0.055
EE_DA22DT23:DA10DT11_FF
11
2.132
-3.547
34.943
-0.082
0.605
3.637
37.681
E
E
23
24
-0.599
F
F
10
9
3.636
-0.386
0.216
-0.044
EE_DT23DC24:DG9DA10_FF
12
4.317
-6.698
37.440
-0.012
0.289
3.362
34.747
E
E
24
25
20.790
F
F
9
8
3.677
12.163
0.201
-0.295
EE_DC24DA25:DT8DG9_FF
13
1.696
-2.900
32.567
-2.565
-0.049
2.764
24.946
E
E
25
26
11.623
F
F
8
7
2.961
4.969
0.108
-0.615
EE_DA25DG26:DC7DT8_FF
14
3.806
-8.903
24.160
-2.744
0.762
3.266
41.034
E
E
26
27
14.388
F
F
7
6
3.492
9.976
0.090
-0.446
EE_DG26DC27:DG6DC7_FF
15
-4.143
5.974
39.646
-1.780
-0.604
1.785
29.521
E
E
27
28
38.993
F
F
6
5
3.588
18.400
-0.394
-1.724
EE_DC27DG28:DC5DG6_FF
16
-3.504
7.426
22.921
-7.026
0.080
3.502
31.470
E
E
28
29
-1.228
F
F
5
4
3.482
-0.664
0.220
-1.024
EE_DG28DA29:DT4DC5_FF
17
4.075
-7.533
31.205
-1.755
0.410
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2003-03-25
1
1
2008-04-28
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1L3S IS THE WILD TYPE BACILLUS DNA POLYMERASE I BOUND TO A 9 BASE PAIR DNA DUPLEX IN THE OPEN CONFORMATION
1L3T IS A 10 BASE PAIR PROTEIN-DNA PRODUCT COMPLEX, PRODUCED BY PLACING A CRYSTAL OF THE 9 BASE PAIR COMPLEX (1L3S) IN A STABILIZATION SOLUTION CONTAINING DTTP.
1L3U IS AN 11 BASE PAIR PROTEIN-DNA PRODUCT COMPLEX, PRODUCED BY PLACING A CRYSTAL OF THE 9 BASE PAIR COMPLEX (1L3S) IN A STABILIZATION SOLUTION CONTAINING DTTP AND DATP.
1L5U IS A 12 BASE PAIR PROTEIN-DNA PRODUCT COMPLEX, PRODUCED BY PLACING A CRYSTAL OF THE 9 BASE PAIR COMPLEX (1L3S) IN A STABILIZATION SOLUTION CONTAINING DTTP, DATP, AND DCTP.
1L3V IS A 15 BASE PAIR PROTEIN-DNA PRODUCT COMPLEX, PRODUCED BY PLACING A CRYSTAL OF THE 9 BASE PAIR COMPLEX (1L3S) IN A STABILIZATION SOLUTION CONTAINING DTTP, DATP, DCTP, AND DGTP.
RCSB
Y
RCSB
2002-05-24
REL
REL
MN
MANGANESE (II) ION
MG
MAGNESIUM ION
SO4
SULFATE ION
DCP
2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
HOH
water
2BDP
PDB ENTRY 2BDP
PDB
experimental model
MN
1
4
MN
MN
1
A
MG
5
5
MG
MG
205
A
SO4
203
6
SO4
SO4
203
A
DCP
201
7
DCP
DCP
201
A
MN
2
4
MN
MN
2
B
SO4
204
6
SO4
SO4
204
B
DCP
202
7
DCP
DCP
202
B
HOH
18
8
HOH
HOH
18
C
HOH
1
8
HOH
HOH
15
D
HOH
44
8
HOH
HOH
16
D
HOH
52
8
HOH
HOH
17
D
HOH
58
8
HOH
HOH
18
D
HOH
68
8
HOH
HOH
19
D
HOH
78
8
HOH
HOH
20
D
HOH
104
8
HOH
HOH
21
D
HOH
108
8
HOH
HOH
22
D
HOH
120
8
HOH
HOH
23
D
HOH
121
8
HOH
HOH
24
D
HOH
134
8
HOH
HOH
25
D
HOH
14
8
HOH
HOH
14
E
HOH
138
8
HOH
HOH
138
E
HOH
51
8
HOH
HOH
51
F
HOH
71
8
HOH
HOH
71
F
HOH
79
8
HOH
HOH
79
F
HOH
116
8
HOH
HOH
116
F
HOH
149
8
HOH
HOH
149
F
HOH
179
8
HOH
HOH
179
F
HOH
2
8
HOH
HOH
2
A
HOH
3
8
HOH
HOH
3
A
HOH
4
8
HOH
HOH
4
A
HOH
7
8
HOH
HOH
7
A
HOH
11
8
HOH
HOH
11
A
HOH
15
8
HOH
HOH
15
A
HOH
16
8
HOH
HOH
16
A
HOH
17
8
HOH
HOH
17
A
HOH
19
8
HOH
HOH
19
A
HOH
22
8
HOH
HOH
22
A
HOH
25
8
HOH
HOH
25
A
HOH
27
8
HOH
HOH
27
A
HOH
30
8
HOH
HOH
30
A
HOH
33
8
HOH
HOH
33
A
HOH
35
8
HOH
HOH
35
A
HOH
37
8
HOH
HOH
37
A
HOH
39
8
HOH
HOH
39
A
HOH
41
8
HOH
HOH
41
A
HOH
43
8
HOH
HOH
43
A
HOH
45
8
HOH
HOH
45
A
HOH
47
8
HOH
HOH
47
A
HOH
49
8
HOH
HOH
49
A
HOH
54
8
HOH
HOH
54
A
HOH
56
8
HOH
HOH
56
A
HOH
57
8
HOH
HOH
57
A
HOH
62
8
HOH
HOH
62
A
HOH
63
8
HOH
HOH
63
A
HOH
64
8
HOH
HOH
64
A
HOH
65
8
HOH
HOH
65
A
HOH
66
8
HOH
HOH
66
A
HOH
69
8
HOH
HOH
69
A
HOH
75
8
HOH
HOH
75
A
HOH
80
8
HOH
HOH
80
A
HOH
82
8
HOH
HOH
82
A
HOH
86
8
HOH
HOH
86
A
HOH
87
8
HOH
HOH
87
A
HOH
91
8
HOH
HOH
91
A
HOH
94
8
HOH
HOH
94
A
HOH
95
8
HOH
HOH
95
A
HOH
97
8
HOH
HOH
97
A
HOH
98
8
HOH
HOH
98
A
HOH
100
8
HOH
HOH
100
A
HOH
101
8
HOH
HOH
101
A
HOH
105
8
HOH
HOH
105
A
HOH
106
8
HOH
HOH
106
A
HOH
107
8
HOH
HOH
107
A
HOH
110
8
HOH
HOH
110
A
HOH
111
8
HOH
HOH
111
A
HOH
112
8
HOH
HOH
112
A
HOH
115
8
HOH
HOH
115
A
HOH
118
8
HOH
HOH
118
A
HOH
119
8
HOH
HOH
119
A
HOH
123
8
HOH
HOH
123
A
HOH
124
8
HOH
HOH
124
A
HOH
125
8
HOH
HOH
125
A
HOH
126
8
HOH
HOH
126
A
HOH
129
8
HOH
HOH
129
A
HOH
130
8
HOH
HOH
130
A
HOH
133
8
HOH
HOH
133
A
HOH
136
8
HOH
HOH
136
A
HOH
137
8
HOH
HOH
137
A
HOH
139
8
HOH
HOH
139
A
HOH
142
8
HOH
HOH
142
A
HOH
143
8
HOH
HOH
143
A
HOH
145
8
HOH
HOH
145
A
HOH
146
8
HOH
HOH
146
A
HOH
148
8
HOH
HOH
148
A
HOH
150
8
HOH
HOH
150
A
HOH
151
8
HOH
HOH
151
A
HOH
154
8
HOH
HOH
154
A
HOH
155
8
HOH
HOH
155
A
HOH
156
8
HOH
HOH
156
A
HOH
157
8
HOH
HOH
157
A
HOH
169
8
HOH
HOH
169
A
HOH
171
8
HOH
HOH
171
A
HOH
172
8
HOH
HOH
172
A
HOH
180
8
HOH
HOH
180
A
HOH
181
8
HOH
HOH
181
A
HOH
183
8
HOH
HOH
183
A
HOH
184
8
HOH
HOH
184
A
HOH
188
8
HOH
HOH
188
A
HOH
190
8
HOH
HOH
190
A
HOH
191
8
HOH
HOH
191
A
HOH
192
8
HOH
HOH
192
A
HOH
5
8
HOH
HOH
5
B
HOH
6
8
HOH
HOH
6
B
HOH
8
8
HOH
HOH
8
B
HOH
9
8
HOH
HOH
9
B
HOH
10
8
HOH
HOH
10
B
HOH
12
8
HOH
HOH
12
B
HOH
13
8
HOH
HOH
13
B
HOH
20
8
HOH
HOH
20
B
HOH
21
8
HOH
HOH
21
B
HOH
23
8
HOH
HOH
23
B
HOH
24
8
HOH
HOH
24
B
HOH
26
8
HOH
HOH
26
B
HOH
28
8
HOH
HOH
28
B
HOH
31
8
HOH
HOH
31
B
HOH
32
8
HOH
HOH
32
B
HOH
36
8
HOH
HOH
36
B
HOH
38
8
HOH
HOH
38
B
HOH
40
8
HOH
HOH
40
B
HOH
53
8
HOH
HOH
53
B
HOH
59
8
HOH
HOH
59
B
HOH
60
8
HOH
HOH
60
B
HOH
61
8
HOH
HOH
61
B
HOH
67
8
HOH
HOH
67
B
HOH
70
8
HOH
HOH
70
B
HOH
72
8
HOH
HOH
72
B
HOH
73
8
HOH
HOH
73
B
HOH
74
8
HOH
HOH
74
B
HOH
76
8
HOH
HOH
76
B
HOH
77
8
HOH
HOH
77
B
HOH
81
8
HOH
HOH
81
B
HOH
83
8
HOH
HOH
83
B
HOH
84
8
HOH
HOH
84
B
HOH
85
8
HOH
HOH
85
B
HOH
88
8
HOH
HOH
88
B
HOH
89
8
HOH
HOH
89
B
HOH
90
8
HOH
HOH
90
B
HOH
92
8
HOH
HOH
92
B
HOH
93
8
HOH
HOH
93
B
HOH
96
8
HOH
HOH
96
B
HOH
99
8
HOH
HOH
99
B
HOH
102
8
HOH
HOH
102
B
HOH
103
8
HOH
HOH
103
B
HOH
109
8
HOH
HOH
109
B
HOH
113
8
HOH
HOH
113
B
HOH
114
8
HOH
HOH
114
B
HOH
117
8
HOH
HOH
117
B
HOH
122
8
HOH
HOH
122
B
HOH
127
8
HOH
HOH
127
B
HOH
128
8
HOH
HOH
128
B
HOH
131
8
HOH
HOH
131
B
HOH
132
8
HOH
HOH
132
B
HOH
135
8
HOH
HOH
135
B
HOH
140
8
HOH
HOH
140
B
HOH
141
8
HOH
HOH
141
B
HOH
144
8
HOH
HOH
144
B
HOH
147
8
HOH
HOH
147
B
HOH
152
8
HOH
HOH
152
B
HOH
153
8
HOH
HOH
153
B
HOH
158
8
HOH
HOH
158
B
HOH
159
8
HOH
HOH
159
B
HOH
160
8
HOH
HOH
160
B
HOH
161
8
HOH
HOH
161
B
HOH
162
8
HOH
HOH
162
B
HOH
163
8
HOH
HOH
163
B
HOH
164
8
HOH
HOH
164
B
HOH
165
8
HOH
HOH
165
B
HOH
166
8
HOH
HOH
166
B
HOH
167
8
HOH
HOH
167
B
HOH
168
8
HOH
HOH
168
B
HOH
170
8
HOH
HOH
170
B
HOH
173
8
HOH
HOH
173
B
HOH
174
8
HOH
HOH
174
B
HOH
175
8
HOH
HOH
175
B
HOH
176
8
HOH
HOH
176
B
HOH
177
8
HOH
HOH
177
B
HOH
178
8
HOH
HOH
178
B
HOH
182
8
HOH
HOH
182
B
HOH
185
8
HOH
HOH
185
B
HOH
186
8
HOH
HOH
186
B
HOH
187
8
HOH
HOH
187
B
HOH
189
8
HOH
HOH
189
B
HOH
193
8
HOH
HOH
193
B
G
20
n
1
DG
20
C
G
21
n
2
DG
21
C
A
22
n
3
DA
22
C
T
23
n
4
DT
23
C
C
24
n
5
DC
24
C
A
25
n
6
DA
25
C
G
26
n
7
DG
26
C
C
27
n
8
DC
27
C
G
28
n
9
DG
28
C
A
29
n
10
DA
29
C
A
1
n
1
DA
1
D
C
2
n
2
DC
2
D
G
3
n
3
DG
3
D
T
4
n
4
DT
4
D
C
5
n
5
DC
5
D
G
6
n
6
DG
6
D
C
7
n
7
DC
7
D
T
8
n
8
DT
8
D
G
9
n
9
DG
9
D
A
10
n
10
DA
10
D
T
11
n
11
DT
11
D
C
12
n
12
DC
12
D
C
13
n
13
DC
13
D
G
14
n
14
DG
14
D
G
20
n
1
DG
20
E
G
21
n
2
DG
21
E
A
22
n
3
DA
22
E
T
23
n
4
DT
23
E
C
24
n
5
DC
24
E
A
25
n
6
DA
25
E
G
26
n
7
DG
26
E
C
27
n
8
DC
27
E
G
28
n
9
DG
28
E
A
29
n
10
DA
29
E
A
1
n
1
DA
1
F
C
2
n
2
DC
2
F
G
3
n
3
DG
3
F
T
4
n
4
DT
4
F
C
5
n
5
DC
5
F
G
6
n
6
DG
6
F
C
7
n
7
DC
7
F
T
8
n
8
DT
8
F
G
9
n
9
DG
9
F
A
10
n
10
DA
10
F
T
11
n
11
DT
11
F
C
12
n
12
DC
12
F
C
13
n
13
DC
13
F
G
14
n
14
DG
14
F
ALA
297
n
1
ALA
297
A
LYS
298
n
2
LYS
298
A
MET
299
n
3
MET
299
A
ALA
300
n
4
ALA
300
A
PHE
301
n
5
PHE
301
A
THR
302
n
6
THR
302
A
LEU
303
n
7
LEU
303
A
ALA
304
n
8
ALA
304
A
ASP
305
n
9
ASP
305
A
ARG
306
n
10
ARG
306
A
VAL
307
n
11
VAL
307
A
THR
308
n
12
THR
308
A
GLU
309
n
13
GLU
309
A
GLU
310
n
14
GLU
310
A
MET
311
n
15
MET
311
A
LEU
312
n
16
LEU
312
A
ALA
313
n
17
ALA
313
A
ASP
314
n
18
ASP
314
A
LYS
315
n
19
LYS
315
A
ALA
316
n
20
ALA
316
A
ALA
317
n
21
ALA
317
A
LEU
318
n
22
LEU
318
A
VAL
319
n
23
VAL
319
A
VAL
320
n
24
VAL
320
A
GLU
321
n
25
GLU
321
A
VAL
322
n
26
VAL
322
A
VAL
323
n
27
VAL
323
A
GLU
324
n
28
GLU
324
A
GLU
325
n
29
GLU
325
A
ASN
326
n
30
ASN
326
A
TYR
327
n
31
TYR
327
A
HIS
328
n
32
HIS
328
A
ALA
329
n
33
ALA
329
A
ALA
330
n
34
ALA
330
A
PRO
331
n
35
PRO
331
A
ILE
332
n
36
ILE
332
A
VAL
333
n
37
VAL
333
A
GLY
334
n
38
GLY
334
A
ILE
335
n
39
ILE
335
A
ALA
336
n
40
ALA
336
A
VAL
337
n
41
VAL
337
A
VAL
338
n
42
VAL
338
A
ASN
339
n
43
ASN
339
A
GLU
340
n
44
GLU
340
A
HIS
341
n
45
HIS
341
A
GLY
342
n
46
GLY
342
A
ARG
343
n
47
ARG
343
A
PHE
344
n
48
PHE
344
A
PHE
345
n
49
PHE
345
A
LEU
346
n
50
LEU
346
A
ARG
347
n
51
ARG
347
A
PRO
348
n
52
PRO
348
A
GLU
349
n
53
GLU
349
A
THR
350
n
54
THR
350
A
ALA
351
n
55
ALA
351
A
LEU
352
n
56
LEU
352
A
ALA
353
n
57
ALA
353
A
ASP
354
n
58
ASP
354
A
PRO
355
n
59
PRO
355
A
GLN
356
n
60
GLN
356
A
PHE
357
n
61
PHE
357
A
VAL
358
n
62
VAL
358
A
ALA
359
n
63
ALA
359
A
TRP
360
n
64
TRP
360
A
LEU
361
n
65
LEU
361
A
GLY
362
n
66
GLY
362
A
ASP
363
n
67
ASP
363
A
GLU
364
n
68
GLU
364
A
THR
365
n
69
THR
365
A
LYS
366
n
70
LYS
366
A
LYS
367
n
71
LYS
367
A
LYS
368
n
72
LYS
368
A
SER
369
n
73
SER
369
A
MET
370
n
74
MET
370
A
PHE
371
n
75
PHE
371
A
ASP
372
n
76
ASP
372
A
SER
373
n
77
SER
373
A
LYS
374
n
78
LYS
374
A
ARG
375
n
79
ARG
375
A
ALA
376
n
80
ALA
376
A
ALA
377
n
81
ALA
377
A
VAL
378
n
82
VAL
378
A
ALA
379
n
83
ALA
379
A
LEU
380
n
84
LEU
380
A
LYS
381
n
85
LYS
381
A
TRP
382
n
86
TRP
382
A
LYS
383
n
87
LYS
383
A
GLY
384
n
88
GLY
384
A
ILE
385
n
89
ILE
385
A
GLU
386
n
90
GLU
386
A
LEU
387
n
91
LEU
387
A
CYS
388
n
92
CYS
388
A
GLY
389
n
93
GLY
389
A
VAL
390
n
94
VAL
390
A
SER
391
n
95
SER
391
A
PHE
392
n
96
PHE
392
A
ASP
393
n
97
ASP
393
A
LEU
394
n
98
LEU
394
A
LEU
395
n
99
LEU
395
A
LEU
396
n
100
LEU
396
A
ALA
397
n
101
ALA
397
A
ALA
398
n
102
ALA
398
A
TYR
399
n
103
TYR
399
A
LEU
400
n
104
LEU
400
A
LEU
401
n
105
LEU
401
A
ASP
402
n
106
ASP
402
A
PRO
403
n
107
PRO
403
A
ALA
404
n
108
ALA
404
A
GLN
405
n
109
GLN
405
A
GLY
406
n
110
GLY
406
A
VAL
407
n
111
VAL
407
A
ASP
408
n
112
ASP
408
A
ASP
409
n
113
ASP
409
A
VAL
410
n
114
VAL
410
A
ALA
411
n
115
ALA
411
A
ALA
412
n
116
ALA
412
A
ALA
413
n
117
ALA
413
A
ALA
414
n
118
ALA
414
A
LYS
415
n
119
LYS
415
A
MET
416
n
120
MET
416
A
LYS
417
n
121
LYS
417
A
GLN
418
n
122
GLN
418
A
TYR
419
n
123
TYR
419
A
GLU
420
n
124
GLU
420
A
ALA
421
n
125
ALA
421
A
VAL
422
n
126
VAL
422
A
ARG
423
n
127
ARG
423
A
PRO
424
n
128
PRO
424
A
ASP
425
n
129
ASP
425
A
GLU
426
n
130
GLU
426
A
ALA
427
n
131
ALA
427
A
VAL
428
n
132
VAL
428
A
TYR
429
n
133
TYR
429
A
GLY
430
n
134
GLY
430
A
LYS
431
n
135
LYS
431
A
GLY
432
n
136
GLY
432
A
ALA
433
n
137
ALA
433
A
LYS
434
n
138
LYS
434
A
ARG
435
n
139
ARG
435
A
ALA
436
n
140
ALA
436
A
VAL
437
n
141
VAL
437
A
PRO
438
n
142
PRO
438
A
ASP
439
n
143
ASP
439
A
GLU
440
n
144
GLU
440
A
PRO
441
n
145
PRO
441
A
VAL
442
n
146
VAL
442
A
LEU
443
n
147
LEU
443
A
ALA
444
n
148
ALA
444
A
GLU
445
n
149
GLU
445
A
HIS
446
n
150
HIS
446
A
LEU
447
n
151
LEU
447
A
VAL
448
n
152
VAL
448
A
ARG
449
n
153
ARG
449
A
LYS
450
n
154
LYS
450
A
ALA
451
n
155
ALA
451
A
ALA
452
n
156
ALA
452
A
ALA
453
n
157
ALA
453
A
ILE
454
n
158
ILE
454
A
TRP
455
n
159
TRP
455
A
GLU
456
n
160
GLU
456
A
LEU
457
n
161
LEU
457
A
GLU
458
n
162
GLU
458
A
ARG
459
n
163
ARG
459
A
PRO
460
n
164
PRO
460
A
PHE
461
n
165
PHE
461
A
LEU
462
n
166
LEU
462
A
ASP
463
n
167
ASP
463
A
GLU
464
n
168
GLU
464
A
LEU
465
n
169
LEU
465
A
ARG
466
n
170
ARG
466
A
ARG
467
n
171
ARG
467
A
ASN
468
n
172
ASN
468
A
GLU
469
n
173
GLU
469
A
GLN
470
n
174
GLN
470
A
ASP
471
n
175
ASP
471
A
ARG
472
n
176
ARG
472
A
LEU
473
n
177
LEU
473
A
LEU
474
n
178
LEU
474
A
VAL
475
n
179
VAL
475
A
GLU
476
n
180
GLU
476
A
LEU
477
n
181
LEU
477
A
GLU
478
n
182
GLU
478
A
GLN
479
n
183
GLN
479
A
PRO
480
n
184
PRO
480
A
LEU
481
n
185
LEU
481
A
SER
482
n
186
SER
482
A
SER
483
n
187
SER
483
A
ILE
484
n
188
ILE
484
A
LEU
485
n
189
LEU
485
A
ALA
486
n
190
ALA
486
A
GLU
487
n
191
GLU
487
A
MET
488
n
192
MET
488
A
GLU
489
n
193
GLU
489
A
PHE
490
n
194
PHE
490
A
ALA
491
n
195
ALA
491
A
GLY
492
n
196
GLY
492
A
VAL
493
n
197
VAL
493
A
LYS
494
n
198
LYS
494
A
VAL
495
n
199
VAL
495
A
ASP
496
n
200
ASP
496
A
THR
497
n
201
THR
497
A
LYS
498
n
202
LYS
498
A
ARG
499
n
203
ARG
499
A
LEU
500
n
204
LEU
500
A
GLU
501
n
205
GLU
501
A
GLN
502
n
206
GLN
502
A
MET
503
n
207
MET
503
A
GLY
504
n
208
GLY
504
A
LYS
505
n
209
LYS
505
A
GLU
506
n
210
GLU
506
A
LEU
507
n
211
LEU
507
A
ALA
508
n
212
ALA
508
A
GLU
509
n
213
GLU
509
A
GLN
510
n
214
GLN
510
A
LEU
511
n
215
LEU
511
A
GLY
512
n
216
GLY
512
A
THR
513
n
217
THR
513
A
VAL
514
n
218
VAL
514
A
GLU
515
n
219
GLU
515
A
GLN
516
n
220
GLN
516
A
ARG
517
n
221
ARG
517
A
ILE
518
n
222
ILE
518
A
TYR
519
n
223
TYR
519
A
GLU
520
n
224
GLU
520
A
LEU
521
n
225
LEU
521
A
ALA
522
n
226
ALA
522
A
GLY
523
n
227
GLY
523
A
GLN
524
n
228
GLN
524
A
GLU
525
n
229
GLU
525
A
PHE
526
n
230
PHE
526
A
ASN
527
n
231
ASN
527
A
ILE
528
n
232
ILE
528
A
ASN
529
n
233
ASN
529
A
SER
530
n
234
SER
530
A
PRO
531
n
235
PRO
531
A
LYS
532
n
236
LYS
532
A
GLN
533
n
237
GLN
533
A
LEU
534
n
238
LEU
534
A
GLY
535
n
239
GLY
535
A
VAL
536
n
240
VAL
536
A
ILE
537
n
241
ILE
537
A
LEU
538
n
242
LEU
538
A
PHE
539
n
243
PHE
539
A
GLU
540
n
244
GLU
540
A
LYS
541
n
245
LYS
541
A
LEU
542
n
246
LEU
542
A
GLN
543
n
247
GLN
543
A
LEU
544
n
248
LEU
544
A
PRO
545
n
249
PRO
545
A
VAL
546
n
250
VAL
546
A
LEU
547
n
251
LEU
547
A
LYS
548
n
252
LYS
548
A
LYS
549
n
253
LYS
549
A
THR
550
n
254
THR
550
A
LYS
551
n
255
LYS
551
A
THR
552
n
256
THR
552
A
GLY
553
n
257
GLY
553
A
TYR
554
n
258
TYR
554
A
SER
555
n
259
SER
555
A
THR
556
n
260
THR
556
A
SER
557
n
261
SER
557
A
ALA
558
n
262
ALA
558
A
ASP
559
n
263
ASP
559
A
VAL
560
n
264
VAL
560
A
LEU
561
n
265
LEU
561
A
GLU
562
n
266
GLU
562
A
LYS
563
n
267
LYS
563
A
LEU
564
n
268
LEU
564
A
ALA
565
n
269
ALA
565
A
PRO
566
n
270
PRO
566
A
TYR
567
n
271
TYR
567
A
HIS
568
n
272
HIS
568
A
GLU
569
n
273
GLU
569
A
ILE
570
n
274
ILE
570
A
VAL
571
n
275
VAL
571
A
GLU
572
n
276
GLU
572
A
ASN
573
n
277
ASN
573
A
ILE
574
n
278
ILE
574
A
LEU
575
n
279
LEU
575
A
HIS
576
n
280
HIS
576
A
TYR
577
n
281
TYR
577
A
ARG
578
n
282
ARG
578
A
GLN
579
n
283
GLN
579
A
LEU
580
n
284
LEU
580
A
GLY
581
n
285
GLY
581
A
LYS
582
n
286
LYS
582
A
LEU
583
n
287
LEU
583
A
GLN
584
n
288
GLN
584
A
SER
585
n
289
SER
585
A
THR
586
n
290
THR
586
A
TYR
587
n
291
TYR
587
A
ILE
588
n
292
ILE
588
A
GLU
589
n
293
GLU
589
A
GLY
590
n
294
GLY
590
A
LEU
591
n
295
LEU
591
A
LEU
592
n
296
LEU
592
A
LYS
593
n
297
LYS
593
A
VAL
594
n
298
VAL
594
A
VAL
595
n
299
VAL
595
A
ARG
596
n
300
ARG
596
A
PRO
597
n
301
PRO
597
A
ASP
598
n
302
ASP
598
A
THR
599
n
303
THR
599
A
LYS
600
n
304
LYS
600
A
LYS
601
n
305
LYS
601
A
VAL
602
n
306
VAL
602
A
HIS
603
n
307
HIS
603
A
THR
604
n
308
THR
604
A
ILE
605
n
309
ILE
605
A
PHE
606
n
310
PHE
606
A
ASN
607
n
311
ASN
607
A
GLN
608
n
312
GLN
608
A
ALA
609
n
313
ALA
609
A
LEU
610
n
314
LEU
610
A
THR
611
n
315
THR
611
A
GLN
612
n
316
GLN
612
A
THR
613
n
317
THR
613
A
GLY
614
n
318
GLY
614
A
ARG
615
n
319
ARG
615
A
LEU
616
n
320
LEU
616
A
SER
617
n
321
SER
617
A
SER
618
n
322
SER
618
A
THR
619
n
323
THR
619
A
GLU
620
n
324
GLU
620
A
PRO
621
n
325
PRO
621
A
ASN
622
n
326
ASN
622
A
LEU
623
n
327
LEU
623
A
GLN
624
n
328
GLN
624
A
ASN
625
n
329
ASN
625
A
ILE
626
n
330
ILE
626
A
PRO
627
n
331
PRO
627
A
ILE
628
n
332
ILE
628
A
ARG
629
n
333
ARG
629
A
LEU
630
n
334
LEU
630
A
GLU
631
n
335
GLU
631
A
GLU
632
n
336
GLU
632
A
GLY
633
n
337
GLY
633
A
ARG
634
n
338
ARG
634
A
LYS
635
n
339
LYS
635
A
ILE
636
n
340
ILE
636
A
ARG
637
n
341
ARG
637
A
GLN
638
n
342
GLN
638
A
ALA
639
n
343
ALA
639
A
PHE
640
n
344
PHE
640
A
VAL
641
n
345
VAL
641
A
PRO
642
n
346
PRO
642
A
SER
643
n
347
SER
643
A
GLU
644
n
348
GLU
644
A
SER
645
n
349
SER
645
A
ASP
646
n
350
ASP
646
A
TRP
647
n
351
TRP
647
A
LEU
648
n
352
LEU
648
A
ILE
649
n
353
ILE
649
A
PHE
650
n
354
PHE
650
A
ALA
651
n
355
ALA
651
A
ALA
652
n
356
ALA
652
A
ASP
653
n
357
ASP
653
A
TYR
654
n
358
TYR
654
A
SER
655
n
359
SER
655
A
GLN
656
n
360
GLN
656
A
ILE
657
n
361
ILE
657
A
GLU
658
n
362
GLU
658
A
LEU
659
n
363
LEU
659
A
ARG
660
n
364
ARG
660
A
VAL
661
n
365
VAL
661
A
LEU
662
n
366
LEU
662
A
ALA
663
n
367
ALA
663
A
HIS
664
n
368
HIS
664
A
ILE
665
n
369
ILE
665
A
ALA
666
n
370
ALA
666
A
GLU
667
n
371
GLU
667
A
ASP
668
n
372
ASP
668
A
ASP
669
n
373
ASP
669
A
ASN
670
n
374
ASN
670
A
LEU
671
n
375
LEU
671
A
MET
672
n
376
MET
672
A
GLU
673
n
377
GLU
673
A
ALA
674
n
378
ALA
674
A
PHE
675
n
379
PHE
675
A
ARG
676
n
380
ARG
676
A
ARG
677
n
381
ARG
677
A
ASP
678
n
382
ASP
678
A
LEU
679
n
383
LEU
679
A
ASP
680
n
384
ASP
680
A
ILE
681
n
385
ILE
681
A
HIS
682
n
386
HIS
682
A
THR
683
n
387
THR
683
A
LYS
684
n
388
LYS
684
A
THR
685
n
389
THR
685
A
ALA
686
n
390
ALA
686
A
MET
687
n
391
MET
687
A
ASP
688
n
392
ASP
688
A
ILE
689
n
393
ILE
689
A
PHE
690
n
394
PHE
690
A
GLN
691
n
395
GLN
691
A
VAL
692
n
396
VAL
692
A
SER
693
n
397
SER
693
A
GLU
694
n
398
GLU
694
A
ASP
695
n
399
ASP
695
A
GLU
696
n
400
GLU
696
A
VAL
697
n
401
VAL
697
A
THR
698
n
402
THR
698
A
PRO
699
n
403
PRO
699
A
ASN
700
n
404
ASN
700
A
MET
701
n
405
MET
701
A
ARG
702
n
406
ARG
702
A
ARG
703
n
407
ARG
703
A
GLN
704
n
408
GLN
704
A
ALA
705
n
409
ALA
705
A
LYS
706
n
410
LYS
706
A
ALA
707
n
411
ALA
707
A
VAL
708
n
412
VAL
708
A
ASN
709
n
413
ASN
709
A
PHE
710
n
414
PHE
710
A
GLY
711
n
415
GLY
711
A
ILE
712
n
416
ILE
712
A
VAL
713
n
417
VAL
713
A
TYR
714
n
418
TYR
714
A
GLY
715
n
419
GLY
715
A
ILE
716
n
420
ILE
716
A
SER
717
n
421
SER
717
A
ASP
718
n
422
ASP
718
A
TYR
719
n
423
TYR
719
A
GLY
720
n
424
GLY
720
A
LEU
721
n
425
LEU
721
A
ALA
722
n
426
ALA
722
A
GLN
723
n
427
GLN
723
A
ASN
724
n
428
ASN
724
A
LEU
725
n
429
LEU
725
A
ASN
726
n
430
ASN
726
A
ILE
727
n
431
ILE
727
A
SER
728
n
432
SER
728
A
ARG
729
n
433
ARG
729
A
LYS
730
n
434
LYS
730
A
GLU
731
n
435
GLU
731
A
ALA
732
n
436
ALA
732
A
ALA
733
n
437
ALA
733
A
GLU
734
n
438
GLU
734
A
PHE
735
n
439
PHE
735
A
ILE
736
n
440
ILE
736
A
GLU
737
n
441
GLU
737
A
ARG
738
n
442
ARG
738
A
TYR
739
n
443
TYR
739
A
PHE
740
n
444
PHE
740
A
GLU
741
n
445
GLU
741
A
SER
742
n
446
SER
742
A
PHE
743
n
447
PHE
743
A
PRO
744
n
448
PRO
744
A
GLY
745
n
449
GLY
745
A
VAL
746
n
450
VAL
746
A
LYS
747
n
451
LYS
747
A
ARG
748
n
452
ARG
748
A
TYR
749
n
453
TYR
749
A
MET
750
n
454
MET
750
A
GLU
751
n
455
GLU
751
A
ASN
752
n
456
ASN
752
A
ILE
753
n
457
ILE
753
A
VAL
754
n
458
VAL
754
A
GLN
755
n
459
GLN
755
A
GLU
756
n
460
GLU
756
A
ALA
757
n
461
ALA
757
A
LYS
758
n
462
LYS
758
A
GLN
759
n
463
GLN
759
A
LYS
760
n
464
LYS
760
A
GLY
761
n
465
GLY
761
A
TYR
762
n
466
TYR
762
A
VAL
763
n
467
VAL
763
A
THR
764
n
468
THR
764
A
THR
765
n
469
THR
765
A
LEU
766
n
470
LEU
766
A
LEU
767
n
471
LEU
767
A
HIS
768
n
472
HIS
768
A
ARG
769
n
473
ARG
769
A
ARG
770
n
474
ARG
770
A
ARG
771
n
475
ARG
771
A
TYR
772
n
476
TYR
772
A
LEU
773
n
477
LEU
773
A
PRO
774
n
478
PRO
774
A
ASP
775
n
479
ASP
775
A
ILE
776
n
480
ILE
776
A
THR
777
n
481
THR
777
A
SER
778
n
482
SER
778
A
ARG
779
n
483
ARG
779
A
ASN
780
n
484
ASN
780
A
PHE
781
n
485
PHE
781
A
ASN
782
n
486
ASN
782
A
VAL
783
n
487
VAL
783
A
ARG
784
n
488
ARG
784
A
SER
785
n
489
SER
785
A
PHE
786
n
490
PHE
786
A
ALA
787
n
491
ALA
787
A
GLU
788
n
492
GLU
788
A
ARG
789
n
493
ARG
789
A
MET
790
n
494
MET
790
A
ALA
791
n
495
ALA
791
A
MET
792
n
496
MET
792
A
ASN
793
n
497
ASN
793
A
THR
794
n
498
THR
794
A
PRO
795
n
499
PRO
795
A
ILE
796
n
500
ILE
796
A
GLN
797
n
501
GLN
797
A
GLY
798
n
502
GLY
798
A
SER
799
n
503
SER
799
A
ALA
800
n
504
ALA
800
A
ALA
801
n
505
ALA
801
A
ASP
802
n
506
ASP
802
A
ILE
803
n
507
ILE
803
A
ILE
804
n
508
ILE
804
A
LYS
805
n
509
LYS
805
A
LYS
806
n
510
LYS
806
A
ALA
807
n
511
ALA
807
A
MET
808
n
512
MET
808
A
ILE
809
n
513
ILE
809
A
ASP
810
n
514
ASP
810
A
LEU
811
n
515
LEU
811
A
ASN
812
n
516
ASN
812
A
ALA
813
n
517
ALA
813
A
ARG
814
n
518
ARG
814
A
LEU
815
n
519
LEU
815
A
LYS
816
n
520
LYS
816
A
GLU
817
n
521
GLU
817
A
GLU
818
n
522
GLU
818
A
ARG
819
n
523
ARG
819
A
LEU
820
n
524
LEU
820
A
GLN
821
n
525
GLN
821
A
ALA
822
n
526
ALA
822
A
HIS
823
n
527
HIS
823
A
LEU
824
n
528
LEU
824
A
LEU
825
n
529
LEU
825
A
LEU
826
n
530
LEU
826
A
GLN
827
n
531
GLN
827
A
VAL
828
n
532
VAL
828
A
HIS
829
n
533
HIS
829
A
ASP
830
n
534
ASP
830
A
GLU
831
n
535
GLU
831
A
LEU
832
n
536
LEU
832
A
ILE
833
n
537
ILE
833
A
LEU
834
n
538
LEU
834
A
GLU
835
n
539
GLU
835
A
ALA
836
n
540
ALA
836
A
PRO
837
n
541
PRO
837
A
LYS
838
n
542
LYS
838
A
GLU
839
n
543
GLU
839
A
GLU
840
n
544
GLU
840
A
MET
841
n
545
MET
841
A
GLU
842
n
546
GLU
842
A
ARG
843
n
547
ARG
843
A
LEU
844
n
548
LEU
844
A
CYS
845
n
549
CYS
845
A
ARG
846
n
550
ARG
846
A
LEU
847
n
551
LEU
847
A
VAL
848
n
552
VAL
848
A
PRO
849
n
553
PRO
849
A
GLU
850
n
554
GLU
850
A
VAL
851
n
555
VAL
851
A
MET
852
n
556
MET
852
A
GLU
853
n
557
GLU
853
A
GLN
854
n
558
GLN
854
A
ALA
855
n
559
ALA
855
A
VAL
856
n
560
VAL
856
A
THR
857
n
561
THR
857
A
LEU
858
n
562
LEU
858
A
ARG
859
n
563
ARG
859
A
VAL
860
n
564
VAL
860
A
PRO
861
n
565
PRO
861
A
LEU
862
n
566
LEU
862
A
LYS
863
n
567
LYS
863
A
VAL
864
n
568
VAL
864
A
ASP
865
n
569
ASP
865
A
TYR
866
n
570
TYR
866
A
HIS
867
n
571
HIS
867
A
TYR
868
n
572
TYR
868
A
GLY
869
n
573
GLY
869
A
SER
870
n
574
SER
870
A
THR
871
n
575
THR
871
A
TRP
872
n
576
TRP
872
A
TYR
873
n
577
TYR
873
A
ASP
874
n
578
ASP
874
A
ALA
875
n
579
ALA
875
A
LYS
876
n
580
LYS
876
A
ALA
297
n
1
ALA
297
B
LYS
298
n
2
LYS
298
B
MET
299
n
3
MET
299
B
ALA
300
n
4
ALA
300
B
PHE
301
n
5
PHE
301
B
THR
302
n
6
THR
302
B
LEU
303
n
7
LEU
303
B
ALA
304
n
8
ALA
304
B
ASP
305
n
9
ASP
305
B
ARG
306
n
10
ARG
306
B
VAL
307
n
11
VAL
307
B
THR
308
n
12
THR
308
B
GLU
309
n
13
GLU
309
B
GLU
310
n
14
GLU
310
B
MET
311
n
15
MET
311
B
LEU
312
n
16
LEU
312
B
ALA
313
n
17
ALA
313
B
ASP
314
n
18
ASP
314
B
LYS
315
n
19
LYS
315
B
ALA
316
n
20
ALA
316
B
ALA
317
n
21
ALA
317
B
LEU
318
n
22
LEU
318
B
VAL
319
n
23
VAL
319
B
VAL
320
n
24
VAL
320
B
GLU
321
n
25
GLU
321
B
VAL
322
n
26
VAL
322
B
VAL
323
n
27
VAL
323
B
GLU
324
n
28
GLU
324
B
GLU
325
n
29
GLU
325
B
ASN
326
n
30
ASN
326
B
TYR
327
n
31
TYR
327
B
HIS
328
n
32
HIS
328
B
ALA
329
n
33
ALA
329
B
ALA
330
n
34
ALA
330
B
PRO
331
n
35
PRO
331
B
ILE
332
n
36
ILE
332
B
VAL
333
n
37
VAL
333
B
GLY
334
n
38
GLY
334
B
ILE
335
n
39
ILE
335
B
ALA
336
n
40
ALA
336
B
VAL
337
n
41
VAL
337
B
VAL
338
n
42
VAL
338
B
ASN
339
n
43
ASN
339
B
GLU
340
n
44
GLU
340
B
HIS
341
n
45
HIS
341
B
GLY
342
n
46
GLY
342
B
ARG
343
n
47
ARG
343
B
PHE
344
n
48
PHE
344
B
PHE
345
n
49
PHE
345
B
LEU
346
n
50
LEU
346
B
ARG
347
n
51
ARG
347
B
PRO
348
n
52
PRO
348
B
GLU
349
n
53
GLU
349
B
THR
350
n
54
THR
350
B
ALA
351
n
55
ALA
351
B
LEU
352
n
56
LEU
352
B
ALA
353
n
57
ALA
353
B
ASP
354
n
58
ASP
354
B
PRO
355
n
59
PRO
355
B
GLN
356
n
60
GLN
356
B
PHE
357
n
61
PHE
357
B
VAL
358
n
62
VAL
358
B
ALA
359
n
63
ALA
359
B
TRP
360
n
64
TRP
360
B
LEU
361
n
65
LEU
361
B
GLY
362
n
66
GLY
362
B
ASP
363
n
67
ASP
363
B
GLU
364
n
68
GLU
364
B
THR
365
n
69
THR
365
B
LYS
366
n
70
LYS
366
B
LYS
367
n
71
LYS
367
B
LYS
368
n
72
LYS
368
B
SER
369
n
73
SER
369
B
MET
370
n
74
MET
370
B
PHE
371
n
75
PHE
371
B
ASP
372
n
76
ASP
372
B
SER
373
n
77
SER
373
B
LYS
374
n
78
LYS
374
B
ARG
375
n
79
ARG
375
B
ALA
376
n
80
ALA
376
B
ALA
377
n
81
ALA
377
B
VAL
378
n
82
VAL
378
B
ALA
379
n
83
ALA
379
B
LEU
380
n
84
LEU
380
B
LYS
381
n
85
LYS
381
B
TRP
382
n
86
TRP
382
B
LYS
383
n
87
LYS
383
B
GLY
384
n
88
GLY
384
B
ILE
385
n
89
ILE
385
B
GLU
386
n
90
GLU
386
B
LEU
387
n
91
LEU
387
B
CYS
388
n
92
CYS
388
B
GLY
389
n
93
GLY
389
B
VAL
390
n
94
VAL
390
B
SER
391
n
95
SER
391
B
PHE
392
n
96
PHE
392
B
ASP
393
n
97
ASP
393
B
LEU
394
n
98
LEU
394
B
LEU
395
n
99
LEU
395
B
LEU
396
n
100
LEU
396
B
ALA
397
n
101
ALA
397
B
ALA
398
n
102
ALA
398
B
TYR
399
n
103
TYR
399
B
LEU
400
n
104
LEU
400
B
LEU
401
n
105
LEU
401
B
ASP
402
n
106
ASP
402
B
PRO
403
n
107
PRO
403
B
ALA
404
n
108
ALA
404
B
GLN
405
n
109
GLN
405
B
GLY
406
n
110
GLY
406
B
VAL
407
n
111
VAL
407
B
ASP
408
n
112
ASP
408
B
ASP
409
n
113
ASP
409
B
VAL
410
n
114
VAL
410
B
ALA
411
n
115
ALA
411
B
ALA
412
n
116
ALA
412
B
ALA
413
n
117
ALA
413
B
ALA
414
n
118
ALA
414
B
LYS
415
n
119
LYS
415
B
MET
416
n
120
MET
416
B
LYS
417
n
121
LYS
417
B
GLN
418
n
122
GLN
418
B
TYR
419
n
123
TYR
419
B
GLU
420
n
124
GLU
420
B
ALA
421
n
125
ALA
421
B
VAL
422
n
126
VAL
422
B
ARG
423
n
127
ARG
423
B
PRO
424
n
128
PRO
424
B
ASP
425
n
129
ASP
425
B
GLU
426
n
130
GLU
426
B
ALA
427
n
131
ALA
427
B
VAL
428
n
132
VAL
428
B
TYR
429
n
133
TYR
429
B
GLY
430
n
134
GLY
430
B
LYS
431
n
135
LYS
431
B
GLY
432
n
136
GLY
432
B
ALA
433
n
137
ALA
433
B
LYS
434
n
138
LYS
434
B
ARG
435
n
139
ARG
435
B
ALA
436
n
140
ALA
436
B
VAL
437
n
141
VAL
437
B
PRO
438
n
142
PRO
438
B
ASP
439
n
143
ASP
439
B
GLU
440
n
144
GLU
440
B
PRO
441
n
145
PRO
441
B
VAL
442
n
146
VAL
442
B
LEU
443
n
147
LEU
443
B
ALA
444
n
148
ALA
444
B
GLU
445
n
149
GLU
445
B
HIS
446
n
150
HIS
446
B
LEU
447
n
151
LEU
447
B
VAL
448
n
152
VAL
448
B
ARG
449
n
153
ARG
449
B
LYS
450
n
154
LYS
450
B
ALA
451
n
155
ALA
451
B
ALA
452
n
156
ALA
452
B
ALA
453
n
157
ALA
453
B
ILE
454
n
158
ILE
454
B
TRP
455
n
159
TRP
455
B
GLU
456
n
160
GLU
456
B
LEU
457
n
161
LEU
457
B
GLU
458
n
162
GLU
458
B
ARG
459
n
163
ARG
459
B
PRO
460
n
164
PRO
460
B
PHE
461
n
165
PHE
461
B
LEU
462
n
166
LEU
462
B
ASP
463
n
167
ASP
463
B
GLU
464
n
168
GLU
464
B
LEU
465
n
169
LEU
465
B
ARG
466
n
170
ARG
466
B
ARG
467
n
171
ARG
467
B
ASN
468
n
172
ASN
468
B
GLU
469
n
173
GLU
469
B
GLN
470
n
174
GLN
470
B
ASP
471
n
175
ASP
471
B
ARG
472
n
176
ARG
472
B
LEU
473
n
177
LEU
473
B
LEU
474
n
178
LEU
474
B
VAL
475
n
179
VAL
475
B
GLU
476
n
180
GLU
476
B
LEU
477
n
181
LEU
477
B
GLU
478
n
182
GLU
478
B
GLN
479
n
183
GLN
479
B
PRO
480
n
184
PRO
480
B
LEU
481
n
185
LEU
481
B
SER
482
n
186
SER
482
B
SER
483
n
187
SER
483
B
ILE
484
n
188
ILE
484
B
LEU
485
n
189
LEU
485
B
ALA
486
n
190
ALA
486
B
GLU
487
n
191
GLU
487
B
MET
488
n
192
MET
488
B
GLU
489
n
193
GLU
489
B
PHE
490
n
194
PHE
490
B
ALA
491
n
195
ALA
491
B
GLY
492
n
196
GLY
492
B
VAL
493
n
197
VAL
493
B
LYS
494
n
198
LYS
494
B
VAL
495
n
199
VAL
495
B
ASP
496
n
200
ASP
496
B
THR
497
n
201
THR
497
B
LYS
498
n
202
LYS
498
B
ARG
499
n
203
ARG
499
B
LEU
500
n
204
LEU
500
B
GLU
501
n
205
GLU
501
B
GLN
502
n
206
GLN
502
B
MET
503
n
207
MET
503
B
GLY
504
n
208
GLY
504
B
LYS
505
n
209
LYS
505
B
GLU
506
n
210
GLU
506
B
LEU
507
n
211
LEU
507
B
ALA
508
n
212
ALA
508
B
GLU
509
n
213
GLU
509
B
GLN
510
n
214
GLN
510
B
LEU
511
n
215
LEU
511
B
GLY
512
n
216
GLY
512
B
THR
513
n
217
THR
513
B
VAL
514
n
218
VAL
514
B
GLU
515
n
219
GLU
515
B
GLN
516
n
220
GLN
516
B
ARG
517
n
221
ARG
517
B
ILE
518
n
222
ILE
518
B
TYR
519
n
223
TYR
519
B
GLU
520
n
224
GLU
520
B
LEU
521
n
225
LEU
521
B
ALA
522
n
226
ALA
522
B
GLY
523
n
227
GLY
523
B
GLN
524
n
228
GLN
524
B
GLU
525
n
229
GLU
525
B
PHE
526
n
230
PHE
526
B
ASN
527
n
231
ASN
527
B
ILE
528
n
232
ILE
528
B
ASN
529
n
233
ASN
529
B
SER
530
n
234
SER
530
B
PRO
531
n
235
PRO
531
B
LYS
532
n
236
LYS
532
B
GLN
533
n
237
GLN
533
B
LEU
534
n
238
LEU
534
B
GLY
535
n
239
GLY
535
B
VAL
536
n
240
VAL
536
B
ILE
537
n
241
ILE
537
B
LEU
538
n
242
LEU
538
B
PHE
539
n
243
PHE
539
B
GLU
540
n
244
GLU
540
B
LYS
541
n
245
LYS
541
B
LEU
542
n
246
LEU
542
B
GLN
543
n
247
GLN
543
B
LEU
544
n
248
LEU
544
B
PRO
545
n
249
PRO
545
B
VAL
546
n
250
VAL
546
B
LEU
547
n
251
LEU
547
B
LYS
548
n
252
LYS
548
B
LYS
549
n
253
LYS
549
B
THR
550
n
254
THR
550
B
LYS
551
n
255
LYS
551
B
THR
552
n
256
THR
552
B
GLY
553
n
257
GLY
553
B
TYR
554
n
258
TYR
554
B
SER
555
n
259
SER
555
B
THR
556
n
260
THR
556
B
SER
557
n
261
SER
557
B
ALA
558
n
262
ALA
558
B
ASP
559
n
263
ASP
559
B
VAL
560
n
264
VAL
560
B
LEU
561
n
265
LEU
561
B
GLU
562
n
266
GLU
562
B
LYS
563
n
267
LYS
563
B
LEU
564
n
268
LEU
564
B
ALA
565
n
269
ALA
565
B
PRO
566
n
270
PRO
566
B
TYR
567
n
271
TYR
567
B
HIS
568
n
272
HIS
568
B
GLU
569
n
273
GLU
569
B
ILE
570
n
274
ILE
570
B
VAL
571
n
275
VAL
571
B
GLU
572
n
276
GLU
572
B
ASN
573
n
277
ASN
573
B
ILE
574
n
278
ILE
574
B
LEU
575
n
279
LEU
575
B
HIS
576
n
280
HIS
576
B
TYR
577
n
281
TYR
577
B
ARG
578
n
282
ARG
578
B
GLN
579
n
283
GLN
579
B
LEU
580
n
284
LEU
580
B
GLY
581
n
285
GLY
581
B
LYS
582
n
286
LYS
582
B
LEU
583
n
287
LEU
583
B
GLN
584
n
288
GLN
584
B
SER
585
n
289
SER
585
B
THR
586
n
290
THR
586
B
TYR
587
n
291
TYR
587
B
ILE
588
n
292
ILE
588
B
GLU
589
n
293
GLU
589
B
GLY
590
n
294
GLY
590
B
LEU
591
n
295
LEU
591
B
LEU
592
n
296
LEU
592
B
LYS
593
n
297
LYS
593
B
VAL
594
n
298
VAL
594
B
VAL
595
n
299
VAL
595
B
ARG
596
n
300
ARG
596
B
PRO
597
n
301
PRO
597
B
ASP
598
n
302
ASP
598
B
THR
599
n
303
THR
599
B
LYS
600
n
304
LYS
600
B
LYS
601
n
305
LYS
601
B
VAL
602
n
306
VAL
602
B
HIS
603
n
307
HIS
603
B
THR
604
n
308
THR
604
B
ILE
605
n
309
ILE
605
B
PHE
606
n
310
PHE
606
B
ASN
607
n
311
ASN
607
B
GLN
608
n
312
GLN
608
B
ALA
609
n
313
ALA
609
B
LEU
610
n
314
LEU
610
B
THR
611
n
315
THR
611
B
GLN
612
n
316
GLN
612
B
THR
613
n
317
THR
613
B
GLY
614
n
318
GLY
614
B
ARG
615
n
319
ARG
615
B
LEU
616
n
320
LEU
616
B
SER
617
n
321
SER
617
B
SER
618
n
322
SER
618
B
THR
619
n
323
THR
619
B
GLU
620
n
324
GLU
620
B
PRO
621
n
325
PRO
621
B
ASN
622
n
326
ASN
622
B
LEU
623
n
327
LEU
623
B
GLN
624
n
328
GLN
624
B
ASN
625
n
329
ASN
625
B
ILE
626
n
330
ILE
626
B
PRO
627
n
331
PRO
627
B
ILE
628
n
332
ILE
628
B
ARG
629
n
333
ARG
629
B
LEU
630
n
334
LEU
630
B
GLU
631
n
335
GLU
631
B
GLU
632
n
336
GLU
632
B
GLY
633
n
337
GLY
633
B
ARG
634
n
338
ARG
634
B
LYS
635
n
339
LYS
635
B
ILE
636
n
340
ILE
636
B
ARG
637
n
341
ARG
637
B
GLN
638
n
342
GLN
638
B
ALA
639
n
343
ALA
639
B
PHE
640
n
344
PHE
640
B
VAL
641
n
345
VAL
641
B
PRO
642
n
346
PRO
642
B
SER
643
n
347
SER
643
B
GLU
644
n
348
GLU
644
B
SER
645
n
349
SER
645
B
ASP
646
n
350
ASP
646
B
TRP
647
n
351
TRP
647
B
LEU
648
n
352
LEU
648
B
ILE
649
n
353
ILE
649
B
PHE
650
n
354
PHE
650
B
ALA
651
n
355
ALA
651
B
ALA
652
n
356
ALA
652
B
ASP
653
n
357
ASP
653
B
TYR
654
n
358
TYR
654
B
SER
655
n
359
SER
655
B
GLN
656
n
360
GLN
656
B
ILE
657
n
361
ILE
657
B
GLU
658
n
362
GLU
658
B
LEU
659
n
363
LEU
659
B
ARG
660
n
364
ARG
660
B
VAL
661
n
365
VAL
661
B
LEU
662
n
366
LEU
662
B
ALA
663
n
367
ALA
663
B
HIS
664
n
368
HIS
664
B
ILE
665
n
369
ILE
665
B
ALA
666
n
370
ALA
666
B
GLU
667
n
371
GLU
667
B
ASP
668
n
372
ASP
668
B
ASP
669
n
373
ASP
669
B
ASN
670
n
374
ASN
670
B
LEU
671
n
375
LEU
671
B
MET
672
n
376
MET
672
B
GLU
673
n
377
GLU
673
B
ALA
674
n
378
ALA
674
B
PHE
675
n
379
PHE
675
B
ARG
676
n
380
ARG
676
B
ARG
677
n
381
ARG
677
B
ASP
678
n
382
ASP
678
B
LEU
679
n
383
LEU
679
B
ASP
680
n
384
ASP
680
B
ILE
681
n
385
ILE
681
B
HIS
682
n
386
HIS
682
B
THR
683
n
387
THR
683
B
LYS
684
n
388
LYS
684
B
THR
685
n
389
THR
685
B
ALA
686
n
390
ALA
686
B
MET
687
n
391
MET
687
B
ASP
688
n
392
ASP
688
B
ILE
689
n
393
ILE
689
B
PHE
690
n
394
PHE
690
B
GLN
691
n
395
GLN
691
B
VAL
692
n
396
VAL
692
B
SER
693
n
397
SER
693
B
GLU
694
n
398
GLU
694
B
ASP
695
n
399
ASP
695
B
GLU
696
n
400
GLU
696
B
VAL
697
n
401
VAL
697
B
THR
698
n
402
THR
698
B
PRO
699
n
403
PRO
699
B
ASN
700
n
404
ASN
700
B
MET
701
n
405
MET
701
B
ARG
702
n
406
ARG
702
B
ARG
703
n
407
ARG
703
B
GLN
704
n
408
GLN
704
B
ALA
705
n
409
ALA
705
B
LYS
706
n
410
LYS
706
B
ALA
707
n
411
ALA
707
B
VAL
708
n
412
VAL
708
B
ASN
709
n
413
ASN
709
B
PHE
710
n
414
PHE
710
B
GLY
711
n
415
GLY
711
B
ILE
712
n
416
ILE
712
B
VAL
713
n
417
VAL
713
B
TYR
714
n
418
TYR
714
B
GLY
715
n
419
GLY
715
B
ILE
716
n
420
ILE
716
B
SER
717
n
421
SER
717
B
ASP
718
n
422
ASP
718
B
TYR
719
n
423
TYR
719
B
GLY
720
n
424
GLY
720
B
LEU
721
n
425
LEU
721
B
ALA
722
n
426
ALA
722
B
GLN
723
n
427
GLN
723
B
ASN
724
n
428
ASN
724
B
LEU
725
n
429
LEU
725
B
ASN
726
n
430
ASN
726
B
ILE
727
n
431
ILE
727
B
SER
728
n
432
SER
728
B
ARG
729
n
433
ARG
729
B
LYS
730
n
434
LYS
730
B
GLU
731
n
435
GLU
731
B
ALA
732
n
436
ALA
732
B
ALA
733
n
437
ALA
733
B
GLU
734
n
438
GLU
734
B
PHE
735
n
439
PHE
735
B
ILE
736
n
440
ILE
736
B
GLU
737
n
441
GLU
737
B
ARG
738
n
442
ARG
738
B
TYR
739
n
443
TYR
739
B
PHE
740
n
444
PHE
740
B
GLU
741
n
445
GLU
741
B
SER
742
n
446
SER
742
B
PHE
743
n
447
PHE
743
B
PRO
744
n
448
PRO
744
B
GLY
745
n
449
GLY
745
B
VAL
746
n
450
VAL
746
B
LYS
747
n
451
LYS
747
B
ARG
748
n
452
ARG
748
B
TYR
749
n
453
TYR
749
B
MET
750
n
454
MET
750
B
GLU
751
n
455
GLU
751
B
ASN
752
n
456
ASN
752
B
ILE
753
n
457
ILE
753
B
VAL
754
n
458
VAL
754
B
GLN
755
n
459
GLN
755
B
GLU
756
n
460
GLU
756
B
ALA
757
n
461
ALA
757
B
LYS
758
n
462
LYS
758
B
GLN
759
n
463
GLN
759
B
LYS
760
n
464
LYS
760
B
GLY
761
n
465
GLY
761
B
TYR
762
n
466
TYR
762
B
VAL
763
n
467
VAL
763
B
THR
764
n
468
THR
764
B
THR
765
n
469
THR
765
B
LEU
766
n
470
LEU
766
B
LEU
767
n
471
LEU
767
B
HIS
768
n
472
HIS
768
B
ARG
769
n
473
ARG
769
B
ARG
770
n
474
ARG
770
B
ARG
771
n
475
ARG
771
B
TYR
772
n
476
TYR
772
B
LEU
773
n
477
LEU
773
B
PRO
774
n
478
PRO
774
B
ASP
775
n
479
ASP
775
B
ILE
776
n
480
ILE
776
B
THR
777
n
481
THR
777
B
SER
778
n
482
SER
778
B
ARG
779
n
483
ARG
779
B
ASN
780
n
484
ASN
780
B
PHE
781
n
485
PHE
781
B
ASN
782
n
486
ASN
782
B
VAL
783
n
487
VAL
783
B
ARG
784
n
488
ARG
784
B
SER
785
n
489
SER
785
B
PHE
786
n
490
PHE
786
B
ALA
787
n
491
ALA
787
B
GLU
788
n
492
GLU
788
B
ARG
789
n
493
ARG
789
B
MET
790
n
494
MET
790
B
ALA
791
n
495
ALA
791
B
MET
792
n
496
MET
792
B
ASN
793
n
497
ASN
793
B
THR
794
n
498
THR
794
B
PRO
795
n
499
PRO
795
B
ILE
796
n
500
ILE
796
B
GLN
797
n
501
GLN
797
B
GLY
798
n
502
GLY
798
B
SER
799
n
503
SER
799
B
ALA
800
n
504
ALA
800
B
ALA
801
n
505
ALA
801
B
ASP
802
n
506
ASP
802
B
ILE
803
n
507
ILE
803
B
ILE
804
n
508
ILE
804
B
LYS
805
n
509
LYS
805
B
LYS
806
n
510
LYS
806
B
ALA
807
n
511
ALA
807
B
MET
808
n
512
MET
808
B
ILE
809
n
513
ILE
809
B
ASP
810
n
514
ASP
810
B
LEU
811
n
515
LEU
811
B
ASN
812
n
516
ASN
812
B
ALA
813
n
517
ALA
813
B
ARG
814
n
518
ARG
814
B
LEU
815
n
519
LEU
815
B
LYS
816
n
520
LYS
816
B
GLU
817
n
521
GLU
817
B
GLU
818
n
522
GLU
818
B
ARG
819
n
523
ARG
819
B
LEU
820
n
524
LEU
820
B
GLN
821
n
525
GLN
821
B
ALA
822
n
526
ALA
822
B
HIS
823
n
527
HIS
823
B
LEU
824
n
528
LEU
824
B
LEU
825
n
529
LEU
825
B
LEU
826
n
530
LEU
826
B
GLN
827
n
531
GLN
827
B
VAL
828
n
532
VAL
828
B
HIS
829
n
533
HIS
829
B
ASP
830
n
534
ASP
830
B
GLU
831
n
535
GLU
831
B
LEU
832
n
536
LEU
832
B
ILE
833
n
537
ILE
833
B
LEU
834
n
538
LEU
834
B
GLU
835
n
539
GLU
835
B
ALA
836
n
540
ALA
836
B
PRO
837
n
541
PRO
837
B
LYS
838
n
542
LYS
838
B
GLU
839
n
543
GLU
839
B
GLU
840
n
544
GLU
840
B
MET
841
n
545
MET
841
B
GLU
842
n
546
GLU
842
B
ARG
843
n
547
ARG
843
B
LEU
844
n
548
LEU
844
B
CYS
845
n
549
CYS
845
B
ARG
846
n
550
ARG
846
B
LEU
847
n
551
LEU
847
B
VAL
848
n
552
VAL
848
B
PRO
849
n
553
PRO
849
B
GLU
850
n
554
GLU
850
B
VAL
851
n
555
VAL
851
B
MET
852
n
556
MET
852
B
GLU
853
n
557
GLU
853
B
GLN
854
n
558
GLN
854
B
ALA
855
n
559
ALA
855
B
VAL
856
n
560
VAL
856
B
THR
857
n
561
THR
857
B
LEU
858
n
562
LEU
858
B
ARG
859
n
563
ARG
859
B
VAL
860
n
564
VAL
860
B
PRO
861
n
565
PRO
861
B
LEU
862
n
566
LEU
862
B
LYS
863
n
567
LYS
863
B
VAL
864
n
568
VAL
864
B
ASP
865
n
569
ASP
865
B
TYR
866
n
570
TYR
866
B
HIS
867
n
571
HIS
867
B
TYR
868
n
572
TYR
868
B
GLY
869
n
573
GLY
869
B
SER
870
n
574
SER
870
B
THR
871
n
575
THR
871
B
TRP
872
n
576
TRP
872
B
TYR
873
n
577
TYR
873
B
ASP
874
n
578
ASP
874
B
ALA
875
n
579
ALA
875
B
LYS
876
n
580
LYS
876
B
author_defined_assembly
3
trimeric
author_defined_assembly
3
trimeric
A
DCP
201
J
O2A
DCP
1_555
A
MN
1
G
MN
MN
1_555
A
DCP
201
J
O2B
DCP
1_555
73.4
A
DCP
201
J
O2A
DCP
1_555
A
MN
1
G
MN
MN
1_555
A
DCP
201
J
O2G
DCP
1_555
95.7
A
DCP
201
J
O2B
DCP
1_555
A
MN
1
G
MN
MN
1_555
A
DCP
201
J
O2G
DCP
1_555
79.4
A
DCP
201
J
O2A
DCP
1_555
A
MN
1
G
MN
MN
1_555
A
ASP
653
E
OD1
ASP
357
1_555
144.5
A
DCP
201
J
O2B
DCP
1_555
A
MN
1
G
MN
MN
1_555
A
ASP
653
E
OD1
ASP
357
1_555
140.9
A
DCP
201
J
O2G
DCP
1_555
A
MN
1
G
MN
MN
1_555
A
ASP
653
E
OD1
ASP
357
1_555
85.6
A
DCP
201
J
O2A
DCP
1_555
A
MN
1
G
MN
MN
1_555
A
ASP
653
E
OD2
ASP
357
1_555
93.4
A
DCP
201
J
O2B
DCP
1_555
A
MN
1
G
MN
MN
1_555
A
ASP
653
E
OD2
ASP
357
1_555
161.3
A
DCP
201
J
O2G
DCP
1_555
A
MN
1
G
MN
MN
1_555
A
ASP
653
E
OD2
ASP
357
1_555
89.1
A
ASP
653
E
OD1
ASP
357
1_555
A
MN
1
G
MN
MN
1_555
A
ASP
653
E
OD2
ASP
357
1_555
51.1
A
DCP
201
J
O2A
DCP
1_555
A
MN
1
G
MN
MN
1_555
A
TYR
654
E
O
TYR
358
1_555
158.7
A
DCP
201
J
O2B
DCP
1_555
A
MN
1
G
MN
MN
1_555
A
TYR
654
E
O
TYR
358
1_555
85.6
A
DCP
201
J
O2G
DCP
1_555
A
MN
1
G
MN
MN
1_555
A
TYR
654
E
O
TYR
358
1_555
83.6
A
ASP
653
E
OD1
ASP
357
1_555
A
MN
1
G
MN
MN
1_555
A
TYR
654
E
O
TYR
358
1_555
56.8
A
ASP
653
E
OD2
ASP
357
1_555
A
MN
1
G
MN
MN
1_555
A
TYR
654
E
O
TYR
358
1_555
107.8
A
DCP
201
J
O2A
DCP
1_555
A
MN
1
G
MN
MN
1_555
A
ASP
830
E
OD2
ASP
534
1_555
100.1
A
DCP
201
J
O2B
DCP
1_555
A
MN
1
G
MN
MN
1_555
A
ASP
830
E
OD2
ASP
534
1_555
81.4
A
DCP
201
J
O2G
DCP
1_555
A
MN
1
G
MN
MN
1_555
A
ASP
830
E
OD2
ASP
534
1_555
150.5
A
ASP
653
E
OD1
ASP
357
1_555
A
MN
1
G
MN
MN
1_555
A
ASP
830
E
OD2
ASP
534
1_555
95.5
A
ASP
653
E
OD2
ASP
357
1_555
A
MN
1
G
MN
MN
1_555
A
ASP
830
E
OD2
ASP
534
1_555
114.5
A
TYR
654
E
O
TYR
358
1_555
A
MN
1
G
MN
MN
1_555
A
ASP
830
E
OD2
ASP
534
1_555
72.7
A
DCP
201
J
O2A
DCP
1_555
A
MG
205
H
MG
MG
1_555
A
ASP
653
E
OD2
ASP
357
1_555
78.0
A
DCP
201
J
O2A
DCP
1_555
A
MG
205
H
MG
MG
1_555
A
ASP
830
E
OD1
ASP
534
1_555
70.6
A
ASP
653
E
OD2
ASP
357
1_555
A
MG
205
H
MG
MG
1_555
A
ASP
830
E
OD1
ASP
534
1_555
85.9
B
DCP
202
M
O2G
DCP
1_555
B
MN
2
K
MN
MN
1_555
B
DCP
202
M
O2B
DCP
1_555
80.9
B
DCP
202
M
O2G
DCP
1_555
B
MN
2
K
MN
MN
1_555
B
DCP
202
M
O2A
DCP
1_555
86.1
B
DCP
202
M
O2B
DCP
1_555
B
MN
2
K
MN
MN
1_555
B
DCP
202
M
O2A
DCP
1_555
69.7
B
DCP
202
M
O2G
DCP
1_555
B
MN
2
K
MN
MN
1_555
B
ASP
653
F
OD2
ASP
357
1_555
88.5
B
DCP
202
M
O2B
DCP
1_555
B
MN
2
K
MN
MN
1_555
B
ASP
653
F
OD2
ASP
357
1_555
163.0
B
DCP
202
M
O2A
DCP
1_555
B
MN
2
K
MN
MN
1_555
B
ASP
653
F
OD2
ASP
357
1_555
96.4
B
DCP
202
M
O2G
DCP
1_555
B
MN
2
K
MN
MN
1_555
B
TYR
654
F
O
TYR
358
1_555
97.2
B
DCP
202
M
O2B
DCP
1_555
B
MN
2
K
MN
MN
1_555
B
TYR
654
F
O
TYR
358
1_555
104.9
B
DCP
202
M
O2A
DCP
1_555
B
MN
2
K
MN
MN
1_555
B
TYR
654
F
O
TYR
358
1_555
173.2
B
ASP
653
F
OD2
ASP
357
1_555
B
MN
2
K
MN
MN
1_555
B
TYR
654
F
O
TYR
358
1_555
89.6
B
DCP
202
M
O2G
DCP
1_555
B
MN
2
K
MN
MN
1_555
B
ASP
830
F
OD1
ASP
534
1_555
153.7
B
DCP
202
M
O2B
DCP
1_555
B
MN
2
K
MN
MN
1_555
B
ASP
830
F
OD1
ASP
534
1_555
96.9
B
DCP
202
M
O2A
DCP
1_555
B
MN
2
K
MN
MN
1_555
B
ASP
830
F
OD1
ASP
534
1_555
68.8
B
ASP
653
F
OD2
ASP
357
1_555
B
MN
2
K
MN
MN
1_555
B
ASP
830
F
OD1
ASP
534
1_555
86.7
B
TYR
654
F
O
TYR
358
1_555
B
MN
2
K
MN
MN
1_555
B
ASP
830
F
OD1
ASP
534
1_555
108.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
302
E
N
THR
6
A
O
ARG
343
E
O
ARG
47
A
O
GLY
342
E
O
GLY
46
A
N
ASN
339
E
N
ASN
43
A
O
VAL
338
E
O
VAL
42
A
N
ALA
317
E
N
ALA
21
A
N
ALA
316
E
N
ALA
20
A
O
SER
369
E
O
SER
73
A
N
MET
370
E
N
MET
74
A
O
PHE
392
E
O
PHE
96
A
O
VAL
602
E
O
VAL
306
A
N
VAL
493
E
N
VAL
197
A
N
LYS
494
E
N
LYS
198
A
O
VAL
641
E
O
VAL
345
A
N
ASN
607
E
N
ASN
311
A
O
SER
617
E
O
SER
321
A
N
LEU
826
E
N
LEU
530
A
O
ILE
833
E
O
ILE
537
A
O
LEU
834
E
O
LEU
538
A
N
PHE
650
E
N
PHE
354
A
N
ILE
649
E
N
ILE
353
A
O
GLY
869
E
O
GLY
573
A
N
VAL
763
E
N
VAL
467
A
O
ARG
771
E
O
ARG
475
B
N
THR
302
F
N
THR
6
B
O
ARG
343
F
O
ARG
47
B
O
PHE
344
F
O
PHE
48
B
N
VAL
337
F
N
VAL
41
B
O
ALA
336
F
O
ALA
40
B
N
VAL
319
F
N
VAL
23
B
N
ALA
316
F
N
ALA
20
B
O
LYS
367
F
O
LYS
71
B
N
MET
370
F
N
MET
74
B
O
PHE
392
F
O
PHE
96
B
N
VAL
493
F
N
VAL
197
B
O
VAL
602
F
O
VAL
306
B
N
ILE
605
F
N
ILE
309
B
O
THR
619
F
O
THR
323
B
N
LEU
826
F
N
LEU
530
B
O
ILE
833
F
O
ILE
537
B
O
LEU
834
F
O
LEU
538
B
N
PHE
650
F
N
PHE
354
B
N
ASP
653
F
N
ASP
357
B
O
ASP
865
F
O
ASP
569
B
N
VAL
763
F
N
VAL
467
B
O
ARG
771
F
O
ARG
475
1
C
O3'
DA
29
A
O3'
DA
10
1
Y
1
E
O3'
DA
29
C
O3'
DA
10
1
Y
1
A
CG
LYS
298
E
CG
LYS
2
1
Y
1
A
CD
LYS
298
E
CD
LYS
2
1
Y
1
A
CE
LYS
298
E
CE
LYS
2
1
Y
1
A
NZ
LYS
298
E
NZ
LYS
2
1
Y
1
B
CG
LYS
298
F
CG
LYS
2
1
Y
1
B
CD
LYS
298
F
CD
LYS
2
1
Y
1
B
CE
LYS
298
F
CE
LYS
2
1
Y
1
B
NZ
LYS
298
F
NZ
LYS
2
1
Y
1
-14.58
1.40
111.70
97.12
B
B
B
CA
N
CD
PRO
PRO
PRO
627
627
627
N
1
A
LYS
298
-22.14
109.86
1
A
LEU
303
-67.51
99.20
1
A
LEU
312
-115.83
50.80
1
A
ASP
314
-80.03
32.67
1
A
LYS
315
178.61
118.59
1
A
THR
350
-77.77
-77.16
1
A
ASP
402
-173.15
93.35
1
A
ALA
421
-77.91
39.02
1
A
ARG
435
-36.16
129.83
1
A
GLU
440
-24.36
-62.70
1
A
LEU
477
-124.30
-70.52
1
A
ASP
496
-67.80
82.29
1
A
GLN
502
-61.39
2.59
1
A
LYS
505
-55.14
-75.15
1
A
GLN
510
-65.39
1.96
1
A
LEU
511
-88.66
-72.77
1
A
GLN
524
-146.68
-140.40
1
A
GLU
525
-144.69
48.71
1
A
ILE
528
-50.29
-7.27
1
A
ILE
537
-72.27
43.35
1
A
LEU
538
-149.80
-79.73
1
A
GLN
543
34.81
89.33
1
A
THR
552
-138.50
-36.19
1
A
SER
555
-39.84
133.98
1
A
VAL
560
-126.33
-51.46
1
A
LEU
564
-104.62
47.92
1
A
ALA
565
-95.26
-60.69
1
A
HIS
568
166.00
140.09
1
A
GLU
569
-79.58
28.95
1
A
THR
586
-62.01
7.38
1
A
TYR
587
-145.47
-74.85
1
A
ASP
598
-63.32
-88.42
1
A
THR
599
-45.42
-12.95
1
A
ASN
625
-140.20
44.54
1
A
ILE
628
-163.90
-19.30
1
A
ASP
653
-93.81
-117.87
1
A
TYR
654
171.74
116.76
1
A
GLN
656
30.07
59.18
1
A
ILE
689
-57.78
-0.63
1
A
PHE
690
-146.32
-2.88
1
A
GLN
691
58.82
-7.68
1
A
ILE
716
-11.19
140.10
1
A
ASN
724
-59.11
-78.55
1
A
ARG
819
44.18
81.98
1
A
HIS
829
66.33
-45.00
1
A
ASP
830
-152.22
33.05
1
A
CYS
845
-45.93
-15.41
1
A
ALA
855
-29.10
-58.46
1
B
LEU
303
-110.66
76.08
1
B
MET
311
-76.79
30.42
1
B
LEU
312
-149.02
35.38
1
B
ALA
313
-55.81
173.94
1
B
ALA
421
-78.46
39.78
1
B
GLU
469
71.13
41.06
1
B
LEU
477
-102.84
-71.68
1
B
PHE
526
-40.93
166.76
1
B
PRO
531
-67.34
36.02
1
B
LYS
532
-137.07
-45.11
1
B
LEU
538
-103.71
-62.88
1
B
PHE
539
-89.37
48.87
1
B
GLU
540
-175.58
-62.86
1
B
THR
550
-116.06
-158.13
1
B
SER
555
-101.25
79.08
1
B
THR
556
-80.09
39.31
1
B
PRO
566
-63.71
7.42
1
B
GLN
584
-69.64
-99.61
1
B
SER
585
-21.36
-58.91
1
B
THR
586
-70.21
-77.28
1
B
PRO
597
-70.87
29.92
1
B
THR
599
-163.72
-5.94
1
B
LEU
610
-143.52
-49.45
1
B
GLU
620
18.68
83.82
1
B
PRO
627
-48.15
151.05
1
B
ILE
628
-149.39
-51.41
1
B
ARG
637
-58.49
11.08
1
B
GLU
644
178.72
156.03
1
B
GLN
691
43.95
72.30
1
B
VAL
697
-50.89
102.81
1
B
LEU
725
-93.68
-93.66
1
B
ASN
726
172.25
50.96
1
B
SER
728
-38.26
166.79
1
B
PHE
743
-119.83
70.40
1
B
PHE
781
-27.26
-49.64
1
B
ARG
819
55.76
19.16
1
B
LEU
825
-123.71
-56.43
1
B
HIS
829
75.87
-55.97
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA-MULTI-ENDO.PARAM
DNA-RNA-MULTI-ENDO.TOP
WATER_REP.PARAM
ATER.TOP
ION.PARAM
ION.TOP
DCTP.PARAM
DCTP.TOP
43.9
0.30
0.74
0.00
0.30
0.00
-0.60
The crystal was twinned, with a partial twinning fraction of 0.485.
Detwinning of the data was performed by treating the data as perfectly twinned, using the detwin_perfect.inp routine in CNS.
The Bacillus polymerase was co-crystallized with ddATP, dCTP, and a DNA
containing a 9 base pair duplex, a 4 base 5' template overhang, and a
single base 3' template overhang. The 3' overhang on the template strand
assured that the DNA duplex was not bound backwards by the polymerase
during crystallization. ddATP was incorporated onto the 3' terminus of
the primer strand. dCTP was not incorporated onto the primer strand, but
was paired opposite the next template base. Thus, the resulting structure
contained a 10 base pair DNA duplex with a 3' primer terminus and a 3 base
5' template overhang.
Electron density was observed for all protein side chains except Lysine
298, which was modelled to the beta carbon. The manganese and magnesium
atoms were assigned on the basis of low B-factor, proximity to
coordinating residues, and by comparison to a related Klentaq polymerase
structure (3KTQ). The data prevent a definitive assignment between MG 205
and water.
0.261
0.004
0.218
0.264
0.218
1.95
39.70
4574
98839
96536
4.7
74.2
RANDOM
1
RESTRAINED
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
PDB ENTRY 2BDP
Engh & Huber
FLAT MODEL
47.4519
0.364792
0.32
0.33
1.95
39.70
186
10523
69
974
9294
0.007
1.3
23.2
1.42
0.66
1.50
1.12
2.00
0.83
2.00
1.26
2.50
0.332
0.021
0.307
2.02
259
4895
10
5.0
39.8
23.2
1.95
39.7
1LV5
129531
129531
-3
0.062
1
18.6
4.9
99.8
0.48
1.95
2.02
2.5
12800
4.1
99.3
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
Crystal Structure of the Closed Conformation of Bacillus DNA Polymerase I Fragment Bound to DNA and dCTP
1
N
N
2
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
4
N
N
6
N
N
7
N
N
8
N
N
8
N
N
8
N
N
8
N
N
8
N
N
8
N
N
A
THR
308
E
THR
12
HELX_P
A
LEU
312
E
LEU
16
5
1
5
A
ARG
347
E
ARG
51
HELX_P
A
LEU
352
E
LEU
56
1
2
6
A
ASP
354
E
ASP
58
HELX_P
A
ASP
363
E
ASP
67
1
3
10
A
ASP
372
E
ASP
76
HELX_P
A
TRP
382
E
TRP
86
1
4
11
A
LEU
394
E
LEU
98
HELX_P
A
ASP
402
E
ASP
106
1
5
9
A
PRO
403
E
PRO
107
HELX_P
A
GLY
406
E
GLY
110
5
6
4
A
ASP
409
E
ASP
113
HELX_P
A
MET
416
E
MET
120
1
7
8
A
PRO
424
E
PRO
128
HELX_P
A
GLY
430
E
GLY
134
1
8
7
A
LYS
431
E
LYS
135
HELX_P
A
ARG
435
E
ARG
139
5
9
5
A
ASP
439
E
ASP
143
HELX_P
A
ASN
468
E
ASN
172
1
10
30
A
GLN
470
E
GLN
174
HELX_P
A
GLU
476
E
GLU
180
1
11
7
A
LEU
477
E
LEU
181
HELX_P
A
GLY
492
E
GLY
196
1
12
16
A
ASP
496
E
ASP
200
HELX_P
A
THR
513
E
THR
217
1
13
18
A
GLU
515
E
GLU
219
HELX_P
A
GLY
523
E
GLY
227
1
14
9
A
SER
530
E
SER
234
HELX_P
A
ILE
537
E
ILE
241
1
15
8
A
SER
557
E
SER
261
HELX_P
A
GLU
562
E
GLU
266
1
16
6
A
ILE
570
E
ILE
274
HELX_P
A
THR
586
E
THR
290
1
17
17
A
TYR
587
E
TYR
291
HELX_P
A
LYS
593
E
LYS
297
1
18
7
A
LEU
630
E
LEU
334
HELX_P
A
LYS
635
E
LYS
339
1
19
6
A
ILE
636
E
ILE
340
HELX_P
A
GLN
638
E
GLN
342
5
20
3
A
GLN
656
E
GLN
360
HELX_P
A
GLU
667
E
GLU
371
1
21
12
A
ASP
668
E
ASP
372
HELX_P
A
ARG
677
E
ARG
381
1
22
10
A
ASP
680
E
ASP
384
HELX_P
A
PHE
690
E
PHE
394
1
23
11
A
SER
693
E
SER
397
HELX_P
A
VAL
697
E
VAL
401
5
24
5
A
THR
698
E
THR
402
HELX_P
A
TYR
714
E
TYR
418
1
25
17
A
SER
717
E
SER
421
HELX_P
A
LEU
725
E
LEU
429
1
26
9
A
SER
728
E
SER
432
HELX_P
A
PHE
743
E
PHE
447
1
27
16
A
PHE
743
E
PHE
447
HELX_P
A
GLY
761
E
GLY
465
1
28
19
A
PRO
774
E
PRO
478
HELX_P
A
SER
778
E
SER
482
5
29
5
A
ASN
780
E
ASN
484
HELX_P
A
GLU
818
E
GLU
522
1
30
39
A
GLU
840
E
GLU
544
HELX_P
A
ALA
855
E
ALA
559
1
31
16
B
THR
308
F
THR
12
HELX_P
B
ALA
313
F
ALA
17
5
32
6
B
ARG
347
F
ARG
51
HELX_P
B
LEU
352
F
LEU
56
1
33
6
B
ASP
354
F
ASP
58
HELX_P
B
GLY
362
F
GLY
66
1
34
9
B
ASP
372
F
ASP
76
HELX_P
B
TRP
382
F
TRP
86
1
35
11
B
LEU
394
F
LEU
98
HELX_P
B
ASP
402
F
ASP
106
1
36
9
B
PRO
403
F
PRO
107
HELX_P
B
GLY
406
F
GLY
110
5
37
4
B
ASP
409
F
ASP
113
HELX_P
B
MET
416
F
MET
120
1
38
8
B
ASP
425
F
ASP
129
HELX_P
B
GLY
430
F
GLY
134
1
39
6
B
ASP
439
F
ASP
143
HELX_P
B
ASN
468
F
ASN
172
1
40
30
B
GLN
470
F
GLN
174
HELX_P
B
GLU
476
F
GLU
180
1
41
7
B
LEU
477
F
LEU
181
HELX_P
B
GLY
492
F
GLY
196
1
42
16
B
ASP
496
F
ASP
200
HELX_P
B
GLU
520
F
GLU
224
1
43
25
B
GLN
533
F
GLN
237
HELX_P
B
PHE
539
F
PHE
243
1
44
7
B
SER
557
F
SER
261
HELX_P
B
GLU
562
F
GLU
266
1
45
6
B
LEU
564
F
LEU
268
HELX_P
B
HIS
568
F
HIS
272
5
46
5
B
GLU
569
F
GLU
273
HELX_P
B
GLN
584
F
GLN
288
1
47
16
B
THR
586
F
THR
290
HELX_P
B
VAL
595
F
VAL
299
1
48
10
B
GLY
633
F
GLY
337
HELX_P
B
ALA
639
F
ALA
343
5
49
7
B
GLN
656
F
GLN
360
HELX_P
B
GLU
667
F
GLU
371
1
50
12
B
ASP
668
F
ASP
372
HELX_P
B
ARG
677
F
ARG
381
1
51
10
B
ASP
680
F
ASP
384
HELX_P
B
GLN
691
F
GLN
395
1
52
12
B
THR
698
F
THR
402
HELX_P
B
TYR
714
F
TYR
418
1
53
17
B
SER
717
F
SER
421
HELX_P
B
LEU
725
F
LEU
429
1
54
9
B
SER
728
F
SER
432
HELX_P
B
PHE
743
F
PHE
447
1
55
16
B
PHE
743
F
PHE
447
HELX_P
B
GLY
761
F
GLY
465
1
56
19
B
PRO
774
F
PRO
478
HELX_P
B
SER
778
F
SER
482
5
57
5
B
ASN
780
F
ASN
484
HELX_P
B
GLU
818
F
GLU
522
1
58
39
B
GLU
840
F
GLU
544
HELX_P
B
GLN
854
F
GLN
558
1
59
15
B
THR
871
F
THR
575
HELX_P
B
ALA
875
F
ALA
579
5
60
5
metalc
2.031
A
MN
1
G
MN
MN
1_555
A
DCP
201
J
O2A
DCP
1_555
metalc
2.046
A
MN
1
G
MN
MN
1_555
A
DCP
201
J
O2B
DCP
1_555
metalc
2.004
A
MN
1
G
MN
MN
1_555
A
DCP
201
J
O2G
DCP
1_555
metalc
2.065
A
MN
1
G
MN
MN
1_555
A
ASP
653
E
OD1
ASP
357
1_555
metalc
2.764
A
MN
1
G
MN
MN
1_555
A
ASP
653
E
OD2
ASP
357
1_555
metalc
2.720
A
MN
1
G
MN
MN
1_555
A
TYR
654
E
O
TYR
358
1_555
metalc
2.499
A
MN
1
G
MN
MN
1_555
A
ASP
830
E
OD2
ASP
534
1_555
metalc
2.660
A
DCP
201
J
O2A
DCP
1_555
A
MG
205
H
MG
MG
1_555
metalc
2.934
A
MG
205
H
MG
MG
1_555
A
ASP
653
E
OD2
ASP
357
1_555
metalc
2.659
A
MG
205
H
MG
MG
1_555
A
ASP
830
E
OD1
ASP
534
1_555
metalc
2.093
B
MN
2
K
MN
MN
1_555
B
DCP
202
M
O2G
DCP
1_555
metalc
2.028
B
MN
2
K
MN
MN
1_555
B
DCP
202
M
O2B
DCP
1_555
metalc
2.091
B
MN
2
K
MN
MN
1_555
B
DCP
202
M
O2A
DCP
1_555
metalc
2.464
B
MN
2
K
MN
MN
1_555
B
ASP
653
F
OD2
ASP
357
1_555
metalc
1.856
B
MN
2
K
MN
MN
1_555
B
TYR
654
F
O
TYR
358
1_555
metalc
2.164
B
MN
2
K
MN
MN
1_555
B
ASP
830
F
OD1
ASP
534
1_555
hydrog
DG-DC PAIR
C
DG
20
A
O6
DG
1
1_555
D
DC
12
B
N4
DC
12
1_555
hydrog
WATSON-CRICK
C
DG
20
A
N1
DG
1
1_555
D
DC
13
B
N3
DC
13
1_555
hydrog
WATSON-CRICK
C
DG
20
A
N2
DG
1
1_555
D
DC
13
B
O2
DC
13
1_555
hydrog
WATSON-CRICK
C
DG
20
A
O6
DG
1
1_555
D
DC
13
B
N4
DC
13
1_555
hydrog
WATSON-CRICK
C
DG
21
A
N1
DG
2
1_555
D
DC
12
B
N3
DC
12
1_555
hydrog
WATSON-CRICK
C
DG
21
A
N2
DG
2
1_555
D
DC
12
B
O2
DC
12
1_555
hydrog
WATSON-CRICK
C
DG
21
A
O6
DG
2
1_555
D
DC
12
B
N4
DC
12
1_555
hydrog
WATSON-CRICK
C
DT
23
A
N3
DT
4
1_555
D
DA
10
B
N1
DA
10
1_555
hydrog
WATSON-CRICK
C
DT
23
A
O4
DT
4
1_555
D
DA
10
B
N6
DA
10
1_555
hydrog
DC-DG PAIR
C
DC
24
A
O2
DC
5
1_555
D
DG
9
B
N2
DG
9
1_555
hydrog
DA-DT PAIR
C
DA
25
A
N1
DA
6
1_555
D
DT
8
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
C
DG
26
A
N1
DG
7
1_555
D
DC
7
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
26
A
N2
DG
7
1_555
D
DC
7
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
26
A
O6
DG
7
1_555
D
DC
7
B
N4
DC
7
1_555
hydrog
DC-DG PAIR
C
DC
27
A
O2
DC
8
1_555
D
DG
6
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
C
DG
28
A
N1
DG
9
1_555
D
DC
5
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
28
A
N2
DG
9
1_555
D
DC
5
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
28
A
O6
DG
9
1_555
D
DC
5
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
C
DA
29
A
N1
DA
10
1_555
D
DT
4
B
N3
DT
4
1_555
hydrog
WATSON-CRICK
C
DA
29
A
N6
DA
10
1_555
D
DT
4
B
O4
DT
4
1_555
hydrog
WATSON-CRICK
E
DG
20
C
N1
DG
1
1_555
F
DC
13
D
N3
DC
13
1_555
hydrog
WATSON-CRICK
E
DG
20
C
N2
DG
1
1_555
F
DC
13
D
O2
DC
13
1_555
hydrog
WATSON-CRICK
E
DG
20
C
O6
DG
1
1_555
F
DC
13
D
N4
DC
13
1_555
hydrog
DG-DC PAIR
E
DG
21
C
N2
DG
2
1_555
F
DC
12
D
O2
DC
12
1_555
hydrog
DA-DT PAIR
E
DA
22
C
N1
DA
3
1_555
F
DT
11
D
N3
DT
11
1_555
hydrog
DT-DA PAIR
E
DT
23
C
N3
DT
4
1_555
F
DA
10
D
N1
DA
10
1_555
hydrog
DC-DG PAIR
E
DC
24
C
O2
DC
5
1_555
F
DG
9
D
N2
DG
9
1_555
hydrog
WATSON-CRICK
E
DA
25
C
N1
DA
6
1_555
F
DT
8
D
N3
DT
8
1_555
hydrog
WATSON-CRICK
E
DA
25
C
N6
DA
6
1_555
F
DT
8
D
O4
DT
8
1_555
hydrog
WATSON-CRICK
E
DG
26
C
N1
DG
7
1_555
F
DC
7
D
N3
DC
7
1_555
hydrog
WATSON-CRICK
E
DG
26
C
N2
DG
7
1_555
F
DC
7
D
O2
DC
7
1_555
hydrog
WATSON-CRICK
E
DG
26
C
O6
DG
7
1_555
F
DC
7
D
N4
DC
7
1_555
hydrog
WATSON-CRICK
E
DC
27
C
N3
DC
8
1_555
F
DG
6
D
N1
DG
6
1_555
hydrog
WATSON-CRICK
E
DC
27
C
N4
DC
8
1_555
F
DG
6
D
O6
DG
6
1_555
hydrog
WATSON-CRICK
E
DC
27
C
O2
DC
8
1_555
F
DG
6
D
N2
DG
6
1_555
hydrog
WATSON-CRICK
E
DG
28
C
N1
DG
9
1_555
F
DC
5
D
N3
DC
5
1_555
hydrog
WATSON-CRICK
E
DG
28
C
N2
DG
9
1_555
F
DC
5
D
O2
DC
5
1_555
hydrog
WATSON-CRICK
E
DG
28
C
O6
DG
9
1_555
F
DC
5
D
N4
DC
5
1_555
hydrog
WATSON-CRICK
E
DA
29
C
N1
DA
10
1_555
F
DT
4
D
N3
DT
4
1_555
hydrog
WATSON-CRICK
E
DA
29
C
N6
DA
10
1_555
F
DT
4
D
O4
DT
4
1_555
TRANSFERASE/DNA
DNA POLYMERASE I, DNA REPLICATION, KLENOW FRAGMENT, PROTEIN-DNA-DNTP COMPLEX, CLOSED CONFORMATION, TRANSFERASE-DNA COMPLEX
A
GLU
620
E
GLU
324
1
A
PRO
621
E
PRO
325
0.26
B
GLU
620
F
GLU
324
1
B
PRO
621
F
PRO
325
-0.16
DPO1_BACST
UNP
3
304
P52026
1LV5
PDB
1
1LV5
1LV5
PDB
2
1LV5
304
876
1LV5
304
876
P52026
A
1
8
580
304
876
1LV5
304
876
P52026
B
1
8
580
20
29
1LV5
20
29
1LV5
C
2
1
10
1
14
1LV5
1
14
1LV5
D
3
1
14
20
29
1LV5
20
29
1LV5
E
2
1
10
1
14
1LV5
1
14
1LV5
F
3
1
14
6
3
2
4
2
6
2
2
4
2
parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
302
E
THR
6
A
ALA
304
E
ALA
8
A
GLY
342
E
GLY
46
A
LEU
346
E
LEU
50
A
GLY
334
E
GLY
38
A
ASN
339
E
ASN
43
A
LYS
315
E
LYS
19
A
GLU
321
E
GLU
25
A
LYS
367
E
LYS
71
A
MET
370
E
MET
74
A
VAL
390
E
VAL
94
A
ASP
393
E
ASP
97
A
LYS
601
E
LYS
305
A
VAL
602
E
VAL
306
A
VAL
493
E
VAL
197
A
VAL
495
E
VAL
199
A
PHE
640
E
PHE
344
A
VAL
641
E
VAL
345
A
ILE
605
E
ILE
309
A
ASN
607
E
ASN
311
A
SER
617
E
SER
321
A
THR
619
E
THR
323
A
HIS
823
E
HIS
527
A
GLN
827
E
GLN
531
A
LEU
832
E
LEU
536
A
PRO
837
E
PRO
541
A
TRP
647
E
TRP
351
A
ALA
652
E
ALA
356
A
TYR
866
E
TYR
570
A
GLY
869
E
GLY
573
A
TYR
762
E
TYR
466
A
THR
764
E
THR
468
A
ARG
770
E
ARG
474
A
TYR
772
E
TYR
476
B
THR
302
F
THR
6
B
LEU
303
F
LEU
7
B
GLY
342
F
GLY
46
B
LEU
346
F
LEU
50
B
ILE
335
F
ILE
39
B
ASN
339
F
ASN
43
B
LYS
315
F
LYS
19
B
VAL
320
F
VAL
24
B
LYS
367
F
LYS
71
B
MET
370
F
MET
74
B
VAL
390
F
VAL
94
B
ASP
393
F
ASP
97
B
VAL
493
F
VAL
197
B
LYS
494
F
LYS
198
B
LYS
601
F
LYS
305
B
VAL
602
F
VAL
306
B
ILE
605
F
ILE
309
B
PHE
606
F
PHE
310
B
SER
618
F
SER
322
B
THR
619
F
THR
323
B
HIS
823
F
HIS
527
B
GLN
827
F
GLN
531
B
GLU
831
F
GLU
535
B
PRO
837
F
PRO
541
B
TRP
647
F
TRP
351
B
TYR
654
F
TYR
358
B
VAL
864
F
VAL
568
B
GLY
869
F
GLY
573
B
TYR
762
F
TYR
466
B
THR
764
F
THR
468
B
ARG
770
F
ARG
474
B
TYR
772
F
TYR
476
BINDING SITE FOR RESIDUE MN A 1
A
MN
1
Software
5
BINDING SITE FOR RESIDUE MN B 2
B
MN
2
Software
4
BINDING SITE FOR RESIDUE MG A 205
A
MG
205
Software
5
BINDING SITE FOR RESIDUE SO4 A 203
A
SO4
203
Software
3
BINDING SITE FOR RESIDUE SO4 B 204
B
SO4
204
Software
1
BINDING SITE FOR RESIDUE DCP A 201
A
DCP
201
Software
19
BINDING SITE FOR RESIDUE DCP B 202
B
DCP
202
Software
17
A
DCP
201
J
DCP
5
1_555
A
MG
205
H
MG
5
1_555
A
ASP
653
E
ASP
357
5
1_555
A
TYR
654
E
TYR
358
5
1_555
A
ASP
830
E
ASP
534
5
1_555
B
DCP
202
M
DCP
4
1_555
B
ASP
653
F
ASP
357
4
1_555
B
TYR
654
F
TYR
358
4
1_555
B
ASP
830
F
ASP
534
4
1_555
A
MN
1
G
MN
5
1_555
A
DCP
201
J
DCP
5
1_555
A
ASP
653
E
ASP
357
5
1_555
A
ASP
830
E
ASP
534
5
1_555
C
DA
29
A
DA
10
5
1_555
A
HOH
154
R
HOH
3
1_555
A
ARG
472
E
ARG
176
3
1_555
A
GLU
476
E
GLU
180
3
1_555
B
GLU
476
F
GLU
180
1
1_555
A
MN
1
G
MN
19
1_555
A
HOH
98
R
HOH
19
1_555
A
HOH
123
R
HOH
19
1_555
A
MG
205
H
MG
19
1_555
A
ARG
615
E
ARG
319
19
1_555
A
ASP
653
E
ASP
357
19
1_555
A
TYR
654
E
TYR
358
19
1_555
A
GLN
656
E
GLN
360
19
1_555
A
ILE
657
E
ILE
361
19
1_555
A
GLU
658
E
GLU
362
19
1_555
A
HIS
682
E
HIS
386
19
1_555
A
ARG
702
E
ARG
406
19
1_555
A
LYS
706
E
LYS
410
19
1_555
A
PHE
710
E
PHE
414
19
1_555
A
TYR
714
E
TYR
418
19
1_555
A
ASP
830
E
ASP
534
19
1_555
C
HOH
18
N
HOH
19
1_555
C
DA
29
A
DA
10
19
1_555
D
DG
3
B
DG
3
19
1_555
B
MN
2
K
MN
17
1_555
B
HOH
96
S
HOH
17
1_555
B
ARG
615
F
ARG
319
17
1_555
B
ASP
653
F
ASP
357
17
1_555
B
TYR
654
F
TYR
358
17
1_555
B
SER
655
F
SER
359
17
1_555
B
GLN
656
F
GLN
360
17
1_555
B
ILE
657
F
ILE
361
17
1_555
B
GLU
658
F
GLU
362
17
1_555
B
HIS
682
F
HIS
386
17
1_555
B
ARG
702
F
ARG
406
17
1_555
B
LYS
706
F
LYS
410
17
1_555
B
PHE
710
F
PHE
414
17
1_555
B
ASP
830
F
ASP
534
17
1_555
E
DA
29
C
DA
10
17
1_555
F
DG
3
D
DG
3
17
1_555
F
DT
4
D
DT
4
17
1_555
144
P 31