0.015547 0.000000 0.000000 0.000000 0.009249 0.000000 0.000000 0.000000 0.006619 0.00000 0.00000 0.00000 RESIDUES PRO 347 AND PRO 438 ARE CIS PROLINES. Mattevi, A. Hol, W.G.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 64.320 108.120 151.080 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C27 H33 N9 O15 P2 785.550 FLAVIN-ADENINE DINUCLEOTIDE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C21 H27 N7 O14 P2 663.425 NICOTINAMIDE-ADENINE-DINUCLEOTIDE non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proteins PSFGEY 0867 0887-3585 13 336 351 10.1002/prot.340130406 1325638 The refined crystal structure of Pseudomonas putida lipoamide dehydrogenase complexed with NAD+ at 2.45 A resolution. 1992 UK J.Mol.Biol. JMOBAK 0070 0022-2836 220 975 The Refined Crystal Structure of Lipoamide Dehydrogenase from Azotobacter Vinelandii at 2.2 Angstroms Resolution. A Comparison with the Structure of Glutathione Reductase 1991 IX Eur.J.Biochem. EJBCAI 0262 0014-2956 179 61 Sequence Analysis of the Lpdv Gene for Lipoamide Dehydrogenase of Branched-Chain-Oxoacid Dehydrogenase of Pseudomonas Putida 1989 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 48081.367 DIHYDROLIPOAMIDE DEHYDROGENASE 1.8.1.4 1 man polymer 785.550 FLAVIN-ADENINE DINUCLEOTIDE 1 syn non-polymer 663.425 NICOTINAMIDE-ADENINE-DINUCLEOTIDE 1 syn non-polymer 18.015 water 190 nat water no no QQTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASP RLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPMLPLGGPVIS STEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYEN GCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQG EMVAEIIAGKARRFEPAAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLI LGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHALHI QQTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASP RLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPMLPLGGPVIS STEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYEN GCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQG EMVAEIIAGKARRFEPAAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLI LGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHALHI A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Pseudomonas sample 303 Pseudomonas putida 2.73 54.95 repository Initial release Version format compliance Derived calculations Version format compliance 1 0 1994-01-31 1 1 2008-03-24 1 2 2011-07-13 HELIX EACH HELIX IS LABELED BY TWO DIGITS. THE FIRST INDICATES THE DOMAIN WHERE THE HELIX IS LOCATED AND THE SECOND ONE GIVES ITS SEQUENTIAL NUMBER. Y 1992-12-16 REL REL FAD FLAVIN-ADENINE DINUCLEOTIDE NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HOH water PSEUDOMONAS PUTIDA IS THE ONLY KNOWN ORGANISM WHICH PRODUCES THREE DIFFERENT LIPOAMIDE DEHYDROGENASES. ONE (LIPDH VAL) OF THEM IS SPECIFIC FOR THE BRANCHED CHAIN OXOACIDDEHYDROGENASE COMPLEX. LIPDH VAL IS A DIMER OF TWO IDENTICAL SUBUNITS. EACH CHAIN IS COMPOSED OF 458 RESIDUES AND ONE MOLECULE OF FAD. THE PROTEIN WAS COCRYSTALLIZED WITH NAD+. FAD 459 2 FAD FAD 459 A NAD 460 3 NAD NAD 460 A HOH 1 4 HOH HOH 461 A HOH 2 4 HOH HOH 462 A HOH 3 4 HOH HOH 463 A HOH 4 4 HOH HOH 464 A HOH 5 4 HOH HOH 465 A HOH 6 4 HOH HOH 466 A HOH 7 4 HOH HOH 467 A HOH 8 4 HOH HOH 468 A HOH 9 4 HOH HOH 469 A HOH 10 4 HOH HOH 470 A HOH 11 4 HOH HOH 471 A HOH 12 4 HOH HOH 472 A HOH 13 4 HOH HOH 473 A HOH 14 4 HOH HOH 474 A HOH 15 4 HOH HOH 475 A HOH 16 4 HOH HOH 476 A HOH 17 4 HOH HOH 477 A HOH 18 4 HOH HOH 478 A HOH 19 4 HOH HOH 479 A HOH 20 4 HOH HOH 480 A HOH 21 4 HOH HOH 481 A HOH 22 4 HOH HOH 482 A HOH 23 4 HOH HOH 483 A HOH 24 4 HOH HOH 484 A HOH 25 4 HOH HOH 485 A HOH 26 4 HOH HOH 486 A HOH 27 4 HOH HOH 487 A HOH 28 4 HOH HOH 488 A HOH 29 4 HOH HOH 489 A HOH 30 4 HOH HOH 490 A HOH 31 4 HOH HOH 491 A HOH 32 4 HOH HOH 492 A HOH 33 4 HOH HOH 493 A HOH 34 4 HOH HOH 494 A HOH 35 4 HOH HOH 495 A HOH 36 4 HOH HOH 496 A HOH 37 4 HOH HOH 497 A HOH 38 4 HOH HOH 498 A HOH 39 4 HOH HOH 499 A HOH 40 4 HOH HOH 500 A HOH 41 4 HOH HOH 501 A HOH 42 4 HOH HOH 502 A HOH 43 4 HOH HOH 503 A HOH 44 4 HOH HOH 504 A HOH 45 4 HOH HOH 505 A HOH 46 4 HOH HOH 506 A HOH 47 4 HOH HOH 507 A HOH 48 4 HOH HOH 508 A HOH 49 4 HOH HOH 509 A HOH 50 4 HOH HOH 510 A HOH 51 4 HOH HOH 511 A HOH 52 4 HOH HOH 512 A HOH 53 4 HOH HOH 513 A HOH 54 4 HOH HOH 514 A HOH 55 4 HOH HOH 515 A HOH 56 4 HOH HOH 516 A HOH 57 4 HOH HOH 517 A HOH 58 4 HOH HOH 518 A HOH 59 4 HOH HOH 519 A HOH 60 4 HOH HOH 520 A HOH 61 4 HOH HOH 521 A HOH 62 4 HOH HOH 522 A HOH 63 4 HOH HOH 523 A HOH 64 4 HOH HOH 524 A HOH 65 4 HOH HOH 525 A HOH 66 4 HOH HOH 526 A HOH 67 4 HOH HOH 527 A HOH 68 4 HOH HOH 528 A HOH 69 4 HOH HOH 529 A HOH 70 4 HOH HOH 530 A HOH 71 4 HOH HOH 531 A HOH 72 4 HOH HOH 532 A HOH 73 4 HOH HOH 533 A HOH 74 4 HOH HOH 534 A HOH 75 4 HOH HOH 535 A HOH 76 4 HOH HOH 536 A HOH 77 4 HOH HOH 537 A HOH 78 4 HOH HOH 538 A HOH 79 4 HOH HOH 539 A HOH 80 4 HOH HOH 540 A HOH 81 4 HOH HOH 541 A HOH 82 4 HOH HOH 542 A HOH 83 4 HOH HOH 543 A HOH 84 4 HOH HOH 544 A HOH 85 4 HOH HOH 545 A HOH 86 4 HOH HOH 546 A HOH 87 4 HOH HOH 547 A HOH 88 4 HOH HOH 548 A HOH 89 4 HOH HOH 549 A HOH 90 4 HOH HOH 550 A HOH 91 4 HOH HOH 551 A HOH 92 4 HOH HOH 552 A HOH 93 4 HOH HOH 553 A HOH 94 4 HOH HOH 554 A HOH 95 4 HOH HOH 555 A HOH 96 4 HOH HOH 556 A HOH 97 4 HOH HOH 557 A HOH 98 4 HOH HOH 558 A HOH 99 4 HOH HOH 559 A HOH 100 4 HOH HOH 560 A HOH 101 4 HOH HOH 561 A HOH 102 4 HOH HOH 562 A HOH 103 4 HOH HOH 563 A HOH 104 4 HOH HOH 564 A HOH 105 4 HOH HOH 565 A HOH 106 4 HOH HOH 566 A HOH 107 4 HOH HOH 567 A HOH 108 4 HOH HOH 568 A HOH 109 4 HOH HOH 569 A HOH 110 4 HOH HOH 570 A HOH 111 4 HOH HOH 571 A HOH 112 4 HOH HOH 572 A HOH 113 4 HOH HOH 573 A HOH 114 4 HOH HOH 574 A HOH 115 4 HOH HOH 575 A HOH 116 4 HOH HOH 576 A HOH 117 4 HOH HOH 577 A HOH 118 4 HOH HOH 578 A HOH 119 4 HOH HOH 579 A HOH 120 4 HOH HOH 580 A HOH 121 4 HOH HOH 581 A HOH 122 4 HOH HOH 582 A HOH 123 4 HOH HOH 583 A HOH 124 4 HOH HOH 584 A HOH 125 4 HOH HOH 585 A HOH 126 4 HOH HOH 586 A HOH 127 4 HOH HOH 587 A HOH 128 4 HOH HOH 588 A HOH 129 4 HOH HOH 589 A HOH 130 4 HOH HOH 590 A HOH 131 4 HOH HOH 591 A HOH 132 4 HOH HOH 592 A HOH 133 4 HOH HOH 593 A HOH 134 4 HOH HOH 594 A HOH 135 4 HOH HOH 595 A HOH 136 4 HOH HOH 596 A HOH 137 4 HOH HOH 597 A HOH 138 4 HOH HOH 598 A HOH 139 4 HOH HOH 599 A HOH 140 4 HOH HOH 600 A HOH 141 4 HOH HOH 601 A HOH 142 4 HOH HOH 602 A HOH 143 4 HOH HOH 603 A HOH 144 4 HOH HOH 604 A HOH 145 4 HOH HOH 605 A HOH 146 4 HOH HOH 606 A HOH 147 4 HOH HOH 607 A HOH 148 4 HOH HOH 608 A HOH 149 4 HOH HOH 609 A HOH 150 4 HOH HOH 610 A HOH 151 4 HOH HOH 611 A HOH 152 4 HOH HOH 612 A HOH 153 4 HOH HOH 613 A HOH 154 4 HOH HOH 614 A HOH 155 4 HOH HOH 615 A HOH 156 4 HOH HOH 616 A HOH 157 4 HOH HOH 617 A HOH 158 4 HOH HOH 618 A HOH 159 4 HOH HOH 619 A HOH 160 4 HOH HOH 620 A HOH 161 4 HOH HOH 621 A HOH 162 4 HOH HOH 622 A HOH 163 4 HOH HOH 623 A HOH 164 4 HOH HOH 624 A HOH 165 4 HOH HOH 625 A HOH 166 4 HOH HOH 626 A HOH 167 4 HOH HOH 627 A HOH 168 4 HOH HOH 628 A HOH 169 4 HOH HOH 629 A HOH 170 4 HOH HOH 630 A HOH 171 4 HOH HOH 631 A HOH 172 4 HOH HOH 632 A HOH 173 4 HOH HOH 633 A HOH 174 4 HOH HOH 634 A HOH 175 4 HOH HOH 635 A HOH 176 4 HOH HOH 636 A HOH 177 4 HOH HOH 637 A HOH 178 4 HOH HOH 638 A HOH 179 4 HOH HOH 639 A HOH 180 4 HOH HOH 640 A HOH 181 4 HOH HOH 641 A HOH 182 4 HOH HOH 642 A HOH 183 4 HOH HOH 643 A HOH 184 4 HOH HOH 644 A HOH 185 4 HOH HOH 645 A HOH 186 4 HOH HOH 646 A HOH 187 4 HOH HOH 647 A HOH 188 4 HOH HOH 648 A HOH 189 4 HOH HOH 649 A HOH 190 4 HOH HOH 650 A GLN 1 n 1 GLN 1 A GLN 2 n 2 GLN 2 A THR 3 n 3 THR 3 A ILE 4 n 4 ILE 4 A GLN 5 n 5 GLN 5 A THR 6 n 6 THR 6 A THR 7 n 7 THR 7 A LEU 8 n 8 LEU 8 A LEU 9 n 9 LEU 9 A ILE 10 n 10 ILE 10 A ILE 11 n 11 ILE 11 A GLY 12 n 12 GLY 12 A GLY 13 n 13 GLY 13 A GLY 14 n 14 GLY 14 A PRO 15 n 15 PRO 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A TYR 18 n 18 TYR 18 A VAL 19 n 19 VAL 19 A ALA 20 n 20 ALA 20 A ALA 21 n 21 ALA 21 A ILE 22 n 22 ILE 22 A ARG 23 n 23 ARG 23 A ALA 24 n 24 ALA 24 A GLY 25 n 25 GLY 25 A GLN 26 n 26 GLN 26 A LEU 27 n 27 LEU 27 A GLY 28 n 28 GLY 28 A ILE 29 n 29 ILE 29 A PRO 30 n 30 PRO 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A VAL 34 n 34 VAL 34 A GLU 35 n 35 GLU 35 A GLY 36 n 36 GLY 36 A GLN 37 n 37 GLN 37 A ALA 38 n 38 ALA 38 A LEU 39 n 39 LEU 39 A GLY 40 n 40 GLY 40 A GLY 41 n 41 GLY 41 A THR 42 n 42 THR 42 A CYS 43 n 43 CYS 43 A LEU 44 n 44 LEU 44 A ASN 45 n 45 ASN 45 A ILE 46 n 46 ILE 46 A GLY 47 n 47 GLY 47 A CYS 48 n 48 CYS 48 A ILE 49 n 49 ILE 49 A PRO 50 n 50 PRO 50 A SER 51 n 51 SER 51 A LYS 52 n 52 LYS 52 A ALA 53 n 53 ALA 53 A LEU 54 n 54 LEU 54 A ILE 55 n 55 ILE 55 A HIS 56 n 56 HIS 56 A VAL 57 n 57 VAL 57 A ALA 58 n 58 ALA 58 A GLU 59 n 59 GLU 59 A GLN 60 n 60 GLN 60 A PHE 61 n 61 PHE 61 A HIS 62 n 62 HIS 62 A GLN 63 n 63 GLN 63 A ALA 64 n 64 ALA 64 A SER 65 n 65 SER 65 A ARG 66 n 66 ARG 66 A PHE 67 n 67 PHE 67 A THR 68 n 68 THR 68 A GLU 69 n 69 GLU 69 A PRO 70 n 70 PRO 70 A SER 71 n 71 SER 71 A PRO 72 n 72 PRO 72 A LEU 73 n 73 LEU 73 A GLY 74 n 74 GLY 74 A ILE 75 n 75 ILE 75 A SER 76 n 76 SER 76 A VAL 77 n 77 VAL 77 A ALA 78 n 78 ALA 78 A SER 79 n 79 SER 79 A PRO 80 n 80 PRO 80 A ARG 81 n 81 ARG 81 A LEU 82 n 82 LEU 82 A ASP 83 n 83 ASP 83 A ILE 84 n 84 ILE 84 A GLY 85 n 85 GLY 85 A GLN 86 n 86 GLN 86 A SER 87 n 87 SER 87 A VAL 88 n 88 VAL 88 A ALA 89 n 89 ALA 89 A TRP 90 n 90 TRP 90 A LYS 91 n 91 LYS 91 A ASP 92 n 92 ASP 92 A GLY 93 n 93 GLY 93 A ILE 94 n 94 ILE 94 A VAL 95 n 95 VAL 95 A ASP 96 n 96 ASP 96 A ARG 97 n 97 ARG 97 A LEU 98 n 98 LEU 98 A THR 99 n 99 THR 99 A THR 100 n 100 THR 100 A GLY 101 n 101 GLY 101 A VAL 102 n 102 VAL 102 A ALA 103 n 103 ALA 103 A ALA 104 n 104 ALA 104 A LEU 105 n 105 LEU 105 A LEU 106 n 106 LEU 106 A LYS 107 n 107 LYS 107 A LYS 108 n 108 LYS 108 A HIS 109 n 109 HIS 109 A GLY 110 n 110 GLY 110 A VAL 111 n 111 VAL 111 A LYS 112 n 112 LYS 112 A VAL 113 n 113 VAL 113 A VAL 114 n 114 VAL 114 A HIS 115 n 115 HIS 115 A GLY 116 n 116 GLY 116 A TRP 117 n 117 TRP 117 A ALA 118 n 118 ALA 118 A LYS 119 n 119 LYS 119 A VAL 120 n 120 VAL 120 A LEU 121 n 121 LEU 121 A ASP 122 n 122 ASP 122 A GLY 123 n 123 GLY 123 A LYS 124 n 124 LYS 124 A GLN 125 n 125 GLN 125 A VAL 126 n 126 VAL 126 A GLU 127 n 127 GLU 127 A VAL 128 n 128 VAL 128 A ASP 129 n 129 ASP 129 A GLY 130 n 130 GLY 130 A GLN 131 n 131 GLN 131 A ARG 132 n 132 ARG 132 A ILE 133 n 133 ILE 133 A GLN 134 n 134 GLN 134 A CYS 135 n 135 CYS 135 A GLU 136 n 136 GLU 136 A HIS 137 n 137 HIS 137 A LEU 138 n 138 LEU 138 A LEU 139 n 139 LEU 139 A LEU 140 n 140 LEU 140 A ALA 141 n 141 ALA 141 A THR 142 n 142 THR 142 A GLY 143 n 143 GLY 143 A SER 144 n 144 SER 144 A SER 145 n 145 SER 145 A SER 146 n 146 SER 146 A VAL 147 n 147 VAL 147 A GLU 148 n 148 GLU 148 A LEU 149 n 149 LEU 149 A PRO 150 n 150 PRO 150 A MET 151 n 151 MET 151 A LEU 152 n 152 LEU 152 A PRO 153 n 153 PRO 153 A LEU 154 n 154 LEU 154 A GLY 155 n 155 GLY 155 A GLY 156 n 156 GLY 156 A PRO 157 n 157 PRO 157 A VAL 158 n 158 VAL 158 A ILE 159 n 159 ILE 159 A SER 160 n 160 SER 160 A SER 161 n 161 SER 161 A THR 162 n 162 THR 162 A GLU 163 n 163 GLU 163 A ALA 164 n 164 ALA 164 A LEU 165 n 165 LEU 165 A ALA 166 n 166 ALA 166 A PRO 167 n 167 PRO 167 A LYS 168 n 168 LYS 168 A ALA 169 n 169 ALA 169 A LEU 170 n 170 LEU 170 A PRO 171 n 171 PRO 171 A GLN 172 n 172 GLN 172 A HIS 173 n 173 HIS 173 A LEU 174 n 174 LEU 174 A VAL 175 n 175 VAL 175 A VAL 176 n 176 VAL 176 A VAL 177 n 177 VAL 177 A GLY 178 n 178 GLY 178 A GLY 179 n 179 GLY 179 A GLY 180 n 180 GLY 180 A TYR 181 n 181 TYR 181 A ILE 182 n 182 ILE 182 A GLY 183 n 183 GLY 183 A LEU 184 n 184 LEU 184 A GLU 185 n 185 GLU 185 A LEU 186 n 186 LEU 186 A GLY 187 n 187 GLY 187 A ILE 188 n 188 ILE 188 A ALA 189 n 189 ALA 189 A TYR 190 n 190 TYR 190 A ARG 191 n 191 ARG 191 A LYS 192 n 192 LYS 192 A LEU 193 n 193 LEU 193 A GLY 194 n 194 GLY 194 A ALA 195 n 195 ALA 195 A GLN 196 n 196 GLN 196 A VAL 197 n 197 VAL 197 A SER 198 n 198 SER 198 A VAL 199 n 199 VAL 199 A VAL 200 n 200 VAL 200 A GLU 201 n 201 GLU 201 A ALA 202 n 202 ALA 202 A ARG 203 n 203 ARG 203 A GLU 204 n 204 GLU 204 A ARG 205 n 205 ARG 205 A ILE 206 n 206 ILE 206 A LEU 207 n 207 LEU 207 A PRO 208 n 208 PRO 208 A THR 209 n 209 THR 209 A TYR 210 n 210 TYR 210 A ASP 211 n 211 ASP 211 A SER 212 n 212 SER 212 A GLU 213 n 213 GLU 213 A LEU 214 n 214 LEU 214 A THR 215 n 215 THR 215 A ALA 216 n 216 ALA 216 A PRO 217 n 217 PRO 217 A VAL 218 n 218 VAL 218 A ALA 219 n 219 ALA 219 A GLU 220 n 220 GLU 220 A SER 221 n 221 SER 221 A LEU 222 n 222 LEU 222 A LYS 223 n 223 LYS 223 A LYS 224 n 224 LYS 224 A LEU 225 n 225 LEU 225 A GLY 226 n 226 GLY 226 A ILE 227 n 227 ILE 227 A ALA 228 n 228 ALA 228 A LEU 229 n 229 LEU 229 A HIS 230 n 230 HIS 230 A LEU 231 n 231 LEU 231 A GLY 232 n 232 GLY 232 A HIS 233 n 233 HIS 233 A SER 234 n 234 SER 234 A VAL 235 n 235 VAL 235 A GLU 236 n 236 GLU 236 A GLY 237 n 237 GLY 237 A TYR 238 n 238 TYR 238 A GLU 239 n 239 GLU 239 A ASN 240 n 240 ASN 240 A GLY 241 n 241 GLY 241 A CYS 242 n 242 CYS 242 A LEU 243 n 243 LEU 243 A LEU 244 n 244 LEU 244 A ALA 245 n 245 ALA 245 A ASN 246 n 246 ASN 246 A ASP 247 n 247 ASP 247 A GLY 248 n 248 GLY 248 A LYS 249 n 249 LYS 249 A GLY 250 n 250 GLY 250 A GLY 251 n 251 GLY 251 A GLN 252 n 252 GLN 252 A LEU 253 n 253 LEU 253 A ARG 254 n 254 ARG 254 A LEU 255 n 255 LEU 255 A GLU 256 n 256 GLU 256 A ALA 257 n 257 ALA 257 A ASP 258 n 258 ASP 258 A ARG 259 n 259 ARG 259 A VAL 260 n 260 VAL 260 A LEU 261 n 261 LEU 261 A VAL 262 n 262 VAL 262 A ALA 263 n 263 ALA 263 A VAL 264 n 264 VAL 264 A GLY 265 n 265 GLY 265 A ARG 266 n 266 ARG 266 A ARG 267 n 267 ARG 267 A PRO 268 n 268 PRO 268 A ARG 269 n 269 ARG 269 A THR 270 n 270 THR 270 A LYS 271 n 271 LYS 271 A GLY 272 n 272 GLY 272 A PHE 273 n 273 PHE 273 A ASN 274 n 274 ASN 274 A LEU 275 n 275 LEU 275 A GLU 276 n 276 GLU 276 A CYS 277 n 277 CYS 277 A LEU 278 n 278 LEU 278 A ASP 279 n 279 ASP 279 A LEU 280 n 280 LEU 280 A LYS 281 n 281 LYS 281 A MET 282 n 282 MET 282 A ASN 283 n 283 ASN 283 A GLY 284 n 284 GLY 284 A ALA 285 n 285 ALA 285 A ALA 286 n 286 ALA 286 A ILE 287 n 287 ILE 287 A ALA 288 n 288 ALA 288 A ILE 289 n 289 ILE 289 A ASP 290 n 290 ASP 290 A GLU 291 n 291 GLU 291 A ARG 292 n 292 ARG 292 A CYS 293 n 293 CYS 293 A GLN 294 n 294 GLN 294 A THR 295 n 295 THR 295 A SER 296 n 296 SER 296 A MET 297 n 297 MET 297 A HIS 298 n 298 HIS 298 A ASN 299 n 299 ASN 299 A VAL 300 n 300 VAL 300 A TRP 301 n 301 TRP 301 A ALA 302 n 302 ALA 302 A ILE 303 n 303 ILE 303 A GLY 304 n 304 GLY 304 A ASP 305 n 305 ASP 305 A VAL 306 n 306 VAL 306 A ALA 307 n 307 ALA 307 A GLY 308 n 308 GLY 308 A GLU 309 n 309 GLU 309 A PRO 310 n 310 PRO 310 A MET 311 n 311 MET 311 A LEU 312 n 312 LEU 312 A ALA 313 n 313 ALA 313 A HIS 314 n 314 HIS 314 A ARG 315 n 315 ARG 315 A ALA 316 n 316 ALA 316 A MET 317 n 317 MET 317 A ALA 318 n 318 ALA 318 A GLN 319 n 319 GLN 319 A GLY 320 n 320 GLY 320 A GLU 321 n 321 GLU 321 A MET 322 n 322 MET 322 A VAL 323 n 323 VAL 323 A ALA 324 n 324 ALA 324 A GLU 325 n 325 GLU 325 A ILE 326 n 326 ILE 326 A ILE 327 n 327 ILE 327 A ALA 328 n 328 ALA 328 A GLY 329 n 329 GLY 329 A LYS 330 n 330 LYS 330 A ALA 331 n 331 ALA 331 A ARG 332 n 332 ARG 332 A ARG 333 n 333 ARG 333 A PHE 334 n 334 PHE 334 A GLU 335 n 335 GLU 335 A PRO 336 n 336 PRO 336 A ALA 337 n 337 ALA 337 A ALA 338 n 338 ALA 338 A ILE 339 n 339 ILE 339 A ALA 340 n 340 ALA 340 A ALA 341 n 341 ALA 341 A VAL 342 n 342 VAL 342 A CYS 343 n 343 CYS 343 A PHE 344 n 344 PHE 344 A THR 345 n 345 THR 345 A ASP 346 n 346 ASP 346 A PRO 347 n 347 PRO 347 A GLU 348 n 348 GLU 348 A VAL 349 n 349 VAL 349 A VAL 350 n 350 VAL 350 A VAL 351 n 351 VAL 351 A VAL 352 n 352 VAL 352 A GLY 353 n 353 GLY 353 A LYS 354 n 354 LYS 354 A THR 355 n 355 THR 355 A PRO 356 n 356 PRO 356 A GLU 357 n 357 GLU 357 A GLN 358 n 358 GLN 358 A ALA 359 n 359 ALA 359 A SER 360 n 360 SER 360 A GLN 361 n 361 GLN 361 A GLN 362 n 362 GLN 362 A GLY 363 n 363 GLY 363 A LEU 364 n 364 LEU 364 A ASP 365 n 365 ASP 365 A CYS 366 n 366 CYS 366 A ILE 367 n 367 ILE 367 A VAL 368 n 368 VAL 368 A ALA 369 n 369 ALA 369 A GLN 370 n 370 GLN 370 A PHE 371 n 371 PHE 371 A PRO 372 n 372 PRO 372 A PHE 373 n 373 PHE 373 A ALA 374 n 374 ALA 374 A ALA 375 n 375 ALA 375 A ASN 376 n 376 ASN 376 A GLY 377 n 377 GLY 377 A ARG 378 n 378 ARG 378 A ALA 379 n 379 ALA 379 A MET 380 n 380 MET 380 A SER 381 n 381 SER 381 A LEU 382 n 382 LEU 382 A GLU 383 n 383 GLU 383 A SER 384 n 384 SER 384 A LYS 385 n 385 LYS 385 A SER 386 n 386 SER 386 A GLY 387 n 387 GLY 387 A PHE 388 n 388 PHE 388 A VAL 389 n 389 VAL 389 A ARG 390 n 390 ARG 390 A VAL 391 n 391 VAL 391 A VAL 392 n 392 VAL 392 A ALA 393 n 393 ALA 393 A ARG 394 n 394 ARG 394 A ARG 395 n 395 ARG 395 A ASP 396 n 396 ASP 396 A ASN 397 n 397 ASN 397 A HIS 398 n 398 HIS 398 A LEU 399 n 399 LEU 399 A ILE 400 n 400 ILE 400 A LEU 401 n 401 LEU 401 A GLY 402 n 402 GLY 402 A TRP 403 n 403 TRP 403 A GLN 404 n 404 GLN 404 A ALA 405 n 405 ALA 405 A VAL 406 n 406 VAL 406 A GLY 407 n 407 GLY 407 A VAL 408 n 408 VAL 408 A ALA 409 n 409 ALA 409 A VAL 410 n 410 VAL 410 A SER 411 n 411 SER 411 A GLU 412 n 412 GLU 412 A LEU 413 n 413 LEU 413 A SER 414 n 414 SER 414 A THR 415 n 415 THR 415 A ALA 416 n 416 ALA 416 A PHE 417 n 417 PHE 417 A ALA 418 n 418 ALA 418 A GLN 419 n 419 GLN 419 A SER 420 n 420 SER 420 A LEU 421 n 421 LEU 421 A GLU 422 n 422 GLU 422 A MET 423 n 423 MET 423 A GLY 424 n 424 GLY 424 A ALA 425 n 425 ALA 425 A CYS 426 n 426 CYS 426 A LEU 427 n 427 LEU 427 A GLU 428 n 428 GLU 428 A ASP 429 n 429 ASP 429 A VAL 430 n 430 VAL 430 A ALA 431 n 431 ALA 431 A GLY 432 n 432 GLY 432 A THR 433 n 433 THR 433 A ILE 434 n 434 ILE 434 A HIS 435 n 435 HIS 435 A ALA 436 n 436 ALA 436 A HIS 437 n 437 HIS 437 A PRO 438 n 438 PRO 438 A THR 439 n 439 THR 439 A LEU 440 n 440 LEU 440 A GLY 441 n 441 GLY 441 A GLU 442 n 442 GLU 442 A ALA 443 n 443 ALA 443 A VAL 444 n 444 VAL 444 A GLN 445 n 445 GLN 445 A GLU 446 n 446 GLU 446 A ALA 447 n 447 ALA 447 A ALA 448 n 448 ALA 448 A LEU 449 n 449 LEU 449 A ARG 450 n 450 ARG 450 A ALA 451 n 451 ALA 451 A LEU 452 n 452 LEU 452 A GLY 453 n 453 GLY 453 A HIS 454 n 454 HIS 454 A ALA 455 n 455 ALA 455 A LEU 456 n 456 LEU 456 A HIS 457 n 457 HIS 457 A ILE 458 n 458 ILE 458 A author_and_software_defined_assembly PISA,PQS 2 dimeric 12510 -85 33060 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_544 x,-y-1,-z-1 crystal symmetry operation 0.0000000000 -108.1200000000 -151.0800000000 1 A C2' FAD 459 WRONG HAND 1 4.44 0.50 120.30 124.74 A A A NE CZ NH1 ARG ARG ARG 23 23 23 N 1 7.63 1.10 114.20 121.83 A A A CA CB SG CYS CYS CYS 43 43 43 N 1 3.23 0.50 120.30 123.53 A A A NE CZ NH1 ARG ARG ARG 66 66 66 N 1 -9.77 1.60 110.90 101.13 A A A CG1 CB CG2 VAL VAL VAL 77 77 77 N 1 5.32 0.80 106.30 111.62 A A A CD1 CG CD2 TRP TRP TRP 90 90 90 N 1 -8.13 1.30 127.00 118.87 A A A CB CG CD1 TRP TRP TRP 90 90 90 N 1 -5.42 0.80 107.30 101.88 A A A CE2 CD2 CG TRP TRP TRP 90 90 90 N 1 5.55 0.90 133.90 139.45 A A A CG CD2 CE3 TRP TRP TRP 90 90 90 N 1 5.23 0.80 106.30 111.53 A A A CD1 CG CD2 TRP TRP TRP 117 117 117 N 1 -5.48 0.80 107.30 101.82 A A A CE2 CD2 CG TRP TRP TRP 117 117 117 N 1 15.24 2.30 115.30 130.54 A A A CA CB CG LEU LEU LEU 139 139 139 N 1 -12.17 2.00 116.20 104.03 A A A CA C N GLY GLY GLY 250 250 251 Y 1 4.41 0.50 120.30 124.71 A A A NE CZ NH1 ARG ARG ARG 259 259 259 N 1 -14.85 1.70 113.30 98.45 A A A CA CB CG MET MET MET 282 282 282 N 1 7.12 0.80 106.30 113.42 A A A CD1 CG CD2 TRP TRP TRP 301 301 301 N 1 -5.93 0.80 107.30 101.37 A A A CE2 CD2 CG TRP TRP TRP 301 301 301 N 1 -12.63 1.50 110.90 98.27 A A A CA CB CG2 VAL VAL VAL 306 306 306 N 1 19.55 2.80 117.10 136.65 A A A CA C N GLU GLU PRO 309 309 310 Y 1 -18.88 1.60 100.20 81.32 A A A CG SD CE MET MET MET 311 311 311 N 1 5.24 0.70 109.00 114.24 A A A CE1 NE2 CD2 HIS HIS HIS 314 314 314 N 1 3.17 0.50 120.30 123.47 A A A NE CZ NH1 ARG ARG ARG 315 315 315 N 1 -4.21 0.50 120.30 116.09 A A A NE CZ NH2 ARG ARG ARG 315 315 315 N 1 -11.11 1.70 113.30 102.19 A A A CA CB CG MET MET MET 317 317 317 N 1 5.29 0.50 120.30 125.59 A A A NE CZ NH1 ARG ARG ARG 333 333 333 N 1 -3.44 0.50 120.30 116.86 A A A NE CZ NH2 ARG ARG ARG 333 333 333 N 1 -10.57 1.60 110.90 100.33 A A A CG1 CB CG2 VAL VAL VAL 342 342 342 N 1 4.64 0.50 120.30 124.94 A A A NE CZ NH1 ARG ARG ARG 378 378 378 N 1 -7.74 0.50 120.30 112.56 A A A NE CZ NH2 ARG ARG ARG 378 378 378 N 1 7.28 0.80 106.30 113.58 A A A CD1 CG CD2 TRP TRP TRP 403 403 403 N 1 -6.09 0.80 107.30 101.21 A A A CE2 CD2 CG TRP TRP TRP 403 403 403 N 1 -10.26 1.50 110.90 100.64 A A A CA CB CG2 VAL VAL VAL 410 410 410 N 1 -3.84 0.50 120.30 116.46 A A A NE CZ NH2 ARG ARG ARG 450 450 450 N 1 A A NE2 CD2 HIS HIS 62 62 -0.069 0.011 1.373 1.304 N 1 A A NE2 CD2 HIS HIS 109 109 -0.074 0.011 1.373 1.299 N 1 A A NE2 CD2 HIS HIS 115 115 -0.068 0.011 1.373 1.305 N 1 A A NE2 CD2 HIS HIS 233 233 -0.067 0.011 1.373 1.306 N 1 A A NE2 CD2 HIS HIS 398 398 -0.071 0.011 1.373 1.302 N 1 A A O O HOH HOH 477 644 1.70 1_555 5_455 1 A A O O HOH HOH 530 543 1.90 1_555 5_555 1 A ALA 21 -56.20 -70.52 1 A GLN 37 -103.75 -69.03 1 A ILE 46 -150.88 39.80 1 A CYS 48 -22.31 -79.70 1 A HIS 115 -71.94 -153.76 1 A LYS 124 172.98 -29.97 1 A ASP 129 47.09 25.58 1 A ALA 141 -154.72 52.45 1 A PRO 157 -18.73 -31.24 1 A SER 160 -125.16 -169.21 1 A LEU 165 -75.14 22.02 1 A ALA 166 -157.32 50.10 1 A PRO 208 -55.58 -8.81 1 A ASN 240 45.40 -83.69 1 A LYS 249 -83.65 -76.42 1 A GLN 252 -116.96 -166.45 1 A LEU 253 146.05 117.48 1 A ALA 263 -142.82 56.42 1 A ASN 274 -72.92 47.75 1 A CYS 277 -66.88 0.18 1 A ASP 279 -66.35 40.43 1 A THR 295 -75.82 -169.44 1 A HIS 298 -14.64 -85.97 1 A ASN 299 -88.25 37.56 1 A GLU 309 9.12 -121.48 1 A ARG 333 -178.73 124.72 1 A SER 384 55.50 -74.33 1 A LYS 385 41.75 84.67 1 A HIS 398 54.70 18.34 1 A ALA 409 38.24 29.18 0.215 2.45 10.0 18085 1 0.0 2.45 10.0 190 3659 97 0 3372 refinement GROMOS refinement TNT DIHYDROLIPOAMIDE DEHYDROGENASE (E.C.1.8.1.4) COMPLEX WITH NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NAD+) THE REFINED STRUCTURE OF PSEUDOMONAS PUTIDA LIPOAMIDE DEHYDROGENASE COMPLEXED WITH NAD+ AT 2.45 ANGSTROMS RESOLUTION 1 N N 2 N N 3 N N 4 N N THE CRYSTALS CONTAIN ONE MONOMER PER ASYMMETRIC UNIT. THE SECOND SUBUNIT OF THE DIMER IS GENERATED BY THE TWOFOLD ROTATION ABOUT THE A AXIS: 1.00 0.00 0.00 0.00 0.00 -1.00 0.00 -108.118 0.00 0.00 -1.00 -151.077 A GLY 14 A GLY 14 HELX_P A LEU 27 A LEU 27 1 1.1 14 A GLY 41 A GLY 41 HELX_P A PHE 67 A PHE 67 1 1.2 27 A ILE 84 A ILE 84 HELX_P A LYS 107 A LYS 107 1 1.3 24 A SER 160 A SER 160 HELX_P A LEU 165 A LEU 165 1 2.4 6 A GLY 180 A GLY 180 HELX_P A GLY 194 A GLY 194 1 2.5 15 A ASP 211 A ASP 211 HELX_P A LYS 224 A LYS 224 1 2.6 14 A LEU 312 A LEU 312 HELX_P A ILE 327 A ILE 327 1 3.7 16 A THR 355 A THR 355 HELX_P A ALA 359 A ALA 359 1 4.8 5 A ALA 409 A ALA 409 HELX_P A GLU 422 A GLU 422 1 4.9 14 A LEU 427 A LEU 427 HELX_P A GLY 432 A GLY 432 1 4.1 6 A GLY 441 A GLY 441 HELX_P A ARG 450 A ARG 450 1 4.1 10 disulf 2.015 A CYS 43 A SG CYS 43 1_555 A CYS 48 A SG CYS 48 1_555 OXIDOREDUCTASE OXIDOREDUCTASE A ASP 346 A ASP 346 1 A PRO 347 A PRO 347 -1.00 A HIS 437 A HIS 437 1 A PRO 438 A PRO 438 -12.38 DLD1_PSEPU UNP 1 1 P09063 MQQTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVAS PRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPMLPLGGPVI SSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYE NGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQ GEMVAEIIAGKARRFEPAAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHL ILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHALHI 2 459 1LVL 1 458 P09063 A 1 1 458 6 3 4 3 5 2 parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 111 A VAL 111 A HIS 115 A HIS 115 A PRO 30 A PRO 30 A VAL 34 A VAL 34 A LEU 8 A LEU 8 A GLY 12 A GLY 12 A LEU 138 A LEU 138 A ALA 141 A ALA 141 A CYS 293 A CYS 293 A THR 295 A THR 295 A ASN 299 A ASN 299 A ILE 303 A ILE 303 A TRP 117 A TRP 117 A LEU 121 A LEU 121 A VAL 126 A VAL 126 A GLY 130 A GLY 130 A GLN 131 A GLN 131 A CYS 135 A CYS 135 A ILE 227 A ILE 227 A LEU 231 A LEU 231 A GLN 196 A GLN 196 A GLU 201 A GLU 201 A HIS 173 A HIS 173 A GLY 178 A GLY 178 A ASP 258 A ASP 258 A ALA 263 A ALA 263 A SER 234 A SER 234 A GLU 239 A GLU 239 A GLY 241 A GLY 241 A ASN 246 A ASN 246 A LEU 253 A LEU 253 A ALA 257 A ALA 257 A ALA 341 A ALA 341 A PHE 344 A PHE 344 A GLU 348 A GLU 348 A VAL 351 A VAL 351 A LEU 399 A LEU 399 A GLY 407 A GLY 407 A GLY 387 A GLY 387 A ALA 393 A ALA 393 A ILE 367 A ILE 367 A PHE 373 A PHE 373 A GLY 143 A GLY 143 A VAL 147 A VAL 147 A GLY 265 A GLY 265 A PRO 268 A PRO 268 BINDING SITE FOR RESIDUE FAD A 459 Software 27 BINDING SITE FOR RESIDUE NAD A 460 Software 18 A ILE 11 A ILE 11 27 1_555 A GLY 12 A GLY 12 27 1_555 A GLY 16 A GLY 16 27 1_555 A GLU 35 A GLU 35 27 1_555 A GLY 36 A GLY 36 27 1_555 A GLY 41 A GLY 41 27 1_555 A THR 42 A THR 42 27 1_555 A CYS 43 A CYS 43 27 1_555 A GLY 47 A GLY 47 27 1_555 A CYS 48 A CYS 48 27 1_555 A LYS 52 A LYS 52 27 1_555 A GLY 116 A GLY 116 27 1_555 A TRP 117 A TRP 117 27 1_555 A ALA 118 A ALA 118 27 1_555 A ALA 141 A ALA 141 27 1_555 A THR 142 A THR 142 27 1_555 A GLY 143 A GLY 143 27 1_555 A TYR 181 A TYR 181 27 1_555 A ARG 266 A ARG 266 27 1_555 A ARG 269 A ARG 269 27 1_555 A ASP 305 A ASP 305 27 1_555 A LEU 312 A LEU 312 27 1_555 A ALA 313 A ALA 313 27 1_555 A HIS 314 A HIS 314 27 1_555 A HIS 437 A HIS 437 27 4_544 A PRO 438 A PRO 438 27 4_544 A HOH 505 D HOH 27 1_555 A VAL 177 A VAL 177 18 1_555 A GLY 178 A GLY 178 18 1_555 A TYR 181 A TYR 181 18 1_555 A ILE 182 A ILE 182 18 1_555 A VAL 200 A VAL 200 18 1_555 A GLU 201 A GLU 201 18 1_555 A ALA 202 A ALA 202 18 1_555 A VAL 235 A VAL 235 18 1_555 A ALA 263 A ALA 263 18 1_555 A VAL 264 A VAL 264 18 1_555 A GLY 265 A GLY 265 18 1_555 A ARG 266 A ARG 266 18 1_555 A GLU 309 A GLU 309 18 1_555 A MET 311 A MET 311 18 1_555 A HOH 461 D HOH 18 1_555 A HOH 470 D HOH 18 1_555 A HOH 508 D HOH 18 1_555 A HOH 583 D HOH 18 1_555 20 C 2 2 21