1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Crnugelj, M.
Hud, N.V.
Plavec, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
320
911
924
10.1016/S0022-2836(02)00569-7
12126614
The solution structure of d(G(4)T(4)G(3))(2): a bimolecular G-quadruplex with a novel fold.
2002
10.2210/pdb1lvs/pdb
pdb_00001lvs
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
G-rich DNA oligomer
3476.254
5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*G)-3'
2
syn
polymer
no
no
(DG)(DG)(DG)(DG)(DT)(DT)(DT)(DT)(DG)(DG)(DG)
GGGGTTTTGGG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-07-24
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2002-05-29
REL
Oligomer has been prepared on solid state support using phosphoramidite chemistry.
sample
This structure was determined using standard 2D homonuclear techniques.
structures with the least restraint violations, structures with the lowest energy
30
10
2D NOESY
PE-COSY
2D TOCSY
50 mM
7.2
ambient
273
K
50 mM
7.2
ambient
298
K
517 NOE-derived distance restraints associated with the nonexchangeable and exchangeable protons; 24 hydrogen-bond restraints; 95 torsion angle restraints for sugar moieties.
Thirty 250 ps simulated annealing calculations at 800 K were initially performed. Further refinement via solvated MD simulations (750ps, TIP3P water, particle mesh Ewald method) followed by energy minimization.
simulated annealing, molecular dynamics
10
fewest violations, lowest energy
5 mM dG4T4G3 per strand; 90%H2O, 10% D2O; 50 mM NaCl; pH 7.2
90% H2O/10% D2O
collection
VNMR
6.1A
processing
Felix
2000
Kollman et.al.
refinement
Amber
6.0
600
Varian
INOVA
500
Bruker
DRX
G
1
n
1
DG
1
A
G
2
n
2
DG
2
A
G
3
n
3
DG
3
A
G
4
n
4
DG
4
A
T
5
n
5
DT
5
A
T
6
n
6
DT
6
A
T
7
n
7
DT
7
A
T
8
n
8
DT
8
A
G
9
n
9
DG
9
A
G
10
n
10
DG
10
A
G
11
n
11
DG
11
A
G
12
n
1
DG
12
B
G
13
n
2
DG
13
B
G
14
n
3
DG
14
B
G
15
n
4
DG
15
B
T
16
n
5
DT
16
B
T
17
n
6
DT
17
B
T
18
n
7
DT
18
B
T
19
n
8
DT
19
B
G
20
n
9
DG
20
B
G
21
n
10
DG
21
B
G
22
n
11
DG
22
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DT
5
0.079
SIDE CHAIN
1
A
DT
7
0.087
SIDE CHAIN
1
B
DT
17
0.077
SIDE CHAIN
2
A
DT
5
0.081
SIDE CHAIN
2
A
DT
8
0.080
SIDE CHAIN
2
A
DG
9
0.105
SIDE CHAIN
2
A
DG
11
0.067
SIDE CHAIN
2
B
DG
12
0.079
SIDE CHAIN
2
B
DG
13
0.071
SIDE CHAIN
2
B
DT
17
0.094
SIDE CHAIN
3
A
DG
3
0.049
SIDE CHAIN
3
A
DT
7
0.079
SIDE CHAIN
3
A
DG
9
0.066
SIDE CHAIN
3
B
DG
12
0.064
SIDE CHAIN
4
A
DT
5
0.063
SIDE CHAIN
4
B
DT
16
0.074
SIDE CHAIN
4
B
DT
17
0.085
SIDE CHAIN
5
A
DT
5
0.087
SIDE CHAIN
5
A
DT
7
0.074
SIDE CHAIN
5
A
DG
9
0.050
SIDE CHAIN
5
A
DG
11
0.056
SIDE CHAIN
5
B
DG
12
0.052
SIDE CHAIN
5
B
DT
19
0.064
SIDE CHAIN
6
A
DT
7
0.082
SIDE CHAIN
6
A
DG
9
0.063
SIDE CHAIN
6
B
DG
12
0.052
SIDE CHAIN
6
B
DT
17
0.072
SIDE CHAIN
7
A
DT
5
0.073
SIDE CHAIN
7
A
DT
7
0.094
SIDE CHAIN
8
A
DT
7
0.173
SIDE CHAIN
9
B
DT
17
0.071
SIDE CHAIN
10
A
DT
5
0.063
SIDE CHAIN
10
A
DG
9
0.061
SIDE CHAIN
10
B
DG
12
0.079
SIDE CHAIN
10
B
DT
17
0.078
SIDE CHAIN
1
3.83
0.60
106.00
109.83
A
A
A
O4'
C4'
C3'
DG
DG
DG
1
1
1
N
1
5.56
0.30
108.30
113.86
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
3.95
0.30
108.30
112.25
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
1
4.70
0.60
119.00
123.70
A
A
A
C4
C5
C7
DT
DT
DT
5
5
5
N
1
-7.38
0.60
122.90
115.52
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
1
-3.72
0.60
122.30
118.58
A
A
A
N3
C2
O2
DT
DT
DT
7
7
7
N
1
-3.60
0.60
122.30
118.70
A
A
A
N3
C2
O2
DT
DT
DT
8
8
8
N
1
-4.16
0.60
122.90
118.74
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
1
6.09
0.30
108.30
114.39
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
-5.13
0.70
102.20
97.07
A
A
A
C4'
C3'
C2'
DG
DG
DG
10
10
10
N
1
-4.82
0.80
102.40
97.58
A
A
A
C3'
C2'
C1'
DG
DG
DG
11
11
11
N
1
4.71
0.30
108.30
113.01
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
5.17
0.60
119.00
124.17
B
B
B
C4
C5
C7
DT
DT
DT
16
16
16
N
1
-7.40
0.60
122.90
115.50
B
B
B
C6
C5
C7
DT
DT
DT
16
16
16
N
1
3.82
0.60
106.00
109.82
B
B
B
O4'
C4'
C3'
DT
DT
DT
17
17
17
N
1
-5.40
0.60
122.90
117.50
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
1
-5.09
0.60
122.90
117.81
B
B
B
C6
C5
C7
DT
DT
DT
18
18
18
N
1
6.61
0.30
108.30
114.91
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
2
4.16
0.30
108.30
112.46
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
2
6.56
0.30
108.30
114.86
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
2
6.25
0.30
108.30
114.55
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
2
4.58
0.30
108.30
112.88
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
2
-5.74
0.60
122.90
117.16
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
2
2.70
0.30
108.30
111.00
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
2
1.81
0.30
108.30
110.11
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
2
-3.97
0.60
122.30
118.33
A
A
A
N3
C2
O2
DT
DT
DT
7
7
7
N
2
-5.04
0.60
122.90
117.86
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
2
6.66
0.30
108.30
114.96
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
2
-4.54
0.70
102.20
97.66
A
A
A
C4'
C3'
C2'
DG
DG
DG
10
10
10
N
2
5.65
0.30
108.30
113.95
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
2
-3.02
0.50
128.60
125.58
B
B
B
N3
C4
C5
DG
DG
DG
14
14
14
N
2
4.30
0.60
119.00
123.30
B
B
B
C4
C5
C7
DT
DT
DT
16
16
16
N
2
-6.54
0.60
122.90
116.36
B
B
B
C6
C5
C7
DT
DT
DT
16
16
16
N
2
2.01
0.30
108.30
110.31
B
B
B
O4'
C1'
N1
DT
DT
DT
17
17
17
N
2
-5.47
0.60
122.90
117.43
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
2
-4.48
0.60
122.90
118.42
B
B
B
C6
C5
C7
DT
DT
DT
18
18
18
N
2
7.12
0.30
108.30
115.42
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
2
4.26
0.30
108.30
112.56
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
2
6.20
0.30
108.30
114.50
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
2
-6.11
0.70
119.90
113.79
B
B
B
N3
C2
N2
DG
DG
DG
22
22
22
N
3
3.95
0.60
106.00
109.95
A
A
A
O4'
C4'
C3'
DG
DG
DG
1
1
1
N
3
1.88
0.30
108.30
110.18
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
3
4.81
0.30
108.30
113.11
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
3
-4.24
0.70
102.20
97.96
A
A
A
C4'
C3'
C2'
DG
DG
DG
3
3
3
N
3
2.56
0.30
108.30
110.86
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
3
4.32
0.60
119.00
123.32
A
A
A
C4
C5
C7
DT
DT
DT
5
5
5
N
3
-6.70
0.60
122.90
116.20
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
3
1.82
0.30
108.30
110.12
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
3
-3.62
0.60
122.30
118.68
A
A
A
N3
C2
O2
DT
DT
DT
7
7
7
N
3
-3.72
0.60
122.30
118.58
A
A
A
N3
C2
O2
DT
DT
DT
8
8
8
N
3
-4.45
0.60
122.90
118.45
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
3
2.92
0.30
108.30
111.22
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
3
-5.74
0.70
102.20
96.46
A
A
A
C4'
C3'
C2'
DG
DG
DG
10
10
10
N
3
2.08
0.30
108.30
110.38
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
3
3.24
0.30
108.30
111.54
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
3
6.19
0.30
108.30
114.49
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
3
-3.13
0.50
128.60
125.47
B
B
B
N3
C4
C5
DG
DG
DG
14
14
14
N
3
5.29
0.60
119.00
124.29
B
B
B
C4
C5
C7
DT
DT
DT
16
16
16
N
3
-7.40
0.60
122.90
115.50
B
B
B
C6
C5
C7
DT
DT
DT
16
16
16
N
3
3.67
0.60
106.00
109.67
B
B
B
O4'
C4'
C3'
DT
DT
DT
17
17
17
N
3
-6.10
0.60
122.90
116.80
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
3
5.22
0.30
108.30
113.52
B
B
B
O4'
C1'
N1
DT
DT
DT
18
18
18
N
3
-4.83
0.60
122.90
118.07
B
B
B
C6
C5
C7
DT
DT
DT
18
18
18
N
3
3.61
0.30
108.30
111.91
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
3
3.10
0.30
108.30
111.40
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
3
2.65
0.30
108.30
110.95
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
4
1.87
0.30
108.30
110.17
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
4
5.73
0.30
108.30
114.03
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
4
3.92
0.30
108.30
112.22
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
4
3.73
0.30
108.30
112.03
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
4
4.39
0.60
119.00
123.39
A
A
A
C4
C5
C7
DT
DT
DT
5
5
5
N
4
-7.14
0.60
122.90
115.76
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
4
3.57
0.30
108.30
111.87
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
4
-4.05
0.60
122.90
118.85
A
A
A
C6
C5
C7
DT
DT
DT
6
6
6
N
4
-3.90
0.60
122.30
118.40
A
A
A
N3
C2
O2
DT
DT
DT
7
7
7
N
4
-3.72
0.60
122.30
118.58
A
A
A
N3
C2
O2
DT
DT
DT
8
8
8
N
4
-4.10
0.60
122.90
118.80
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
4
4.55
0.30
108.30
112.85
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
4
-4.84
0.70
102.20
97.36
A
A
A
C4'
C3'
C2'
DG
DG
DG
10
10
10
N
4
-4.98
0.80
102.40
97.42
A
A
A
C3'
C2'
C1'
DG
DG
DG
11
11
11
N
4
5.36
0.30
108.30
113.66
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
4
3.96
0.60
106.00
109.96
B
B
B
O4'
C4'
C3'
DT
DT
DT
16
16
16
N
4
4.98
0.60
119.00
123.98
B
B
B
C4
C5
C7
DT
DT
DT
16
16
16
N
4
-7.41
0.60
122.90
115.49
B
B
B
C6
C5
C7
DT
DT
DT
16
16
16
N
4
-5.57
0.60
122.90
117.33
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
4
-4.49
0.60
122.90
118.41
B
B
B
C6
C5
C7
DT
DT
DT
18
18
18
N
4
5.49
0.30
108.30
113.79
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
4
3.93
0.30
108.30
112.23
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
4
-5.10
0.70
119.90
114.80
B
B
B
N3
C2
N2
DG
DG
DG
22
22
22
N
5
-4.82
0.70
119.90
115.08
A
A
A
N3
C2
N2
DG
DG
DG
1
1
1
N
5
4.95
0.30
108.30
113.25
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
5
-5.32
0.80
102.40
97.08
A
A
A
C3'
C2'
C1'
DG
DG
DG
3
3
3
N
5
3.29
0.30
108.30
111.59
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
5
3.18
0.30
108.30
111.48
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
5
4.10
0.60
119.00
123.10
A
A
A
C4
C5
C7
DT
DT
DT
5
5
5
N
5
-6.97
0.60
122.90
115.93
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
5
2.53
0.30
108.30
110.83
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
5
1.82
0.30
108.30
110.12
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
5
-4.49
0.60
122.30
117.81
A
A
A
N3
C2
O2
DT
DT
DT
7
7
7
N
5
-3.71
0.60
122.90
119.19
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
5
4.24
0.30
108.30
112.54
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
5
-5.21
0.70
102.20
96.99
A
A
A
C4'
C3'
C2'
DG
DG
DG
10
10
10
N
5
-5.15
0.80
102.40
97.25
A
A
A
C3'
C2'
C1'
DG
DG
DG
11
11
11
N
5
6.12
0.30
108.30
114.42
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
5
3.06
0.50
111.50
114.56
B
B
B
C5
C6
N1
DG
DG
DG
12
12
12
N
5
4.47
0.60
119.00
123.47
B
B
B
C4
C5
C7
DT
DT
DT
16
16
16
N
5
-6.77
0.60
122.90
116.13
B
B
B
C6
C5
C7
DT
DT
DT
16
16
16
N
5
-5.82
0.60
122.90
117.08
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
5
-4.89
0.60
122.90
118.01
B
B
B
C6
C5
C7
DT
DT
DT
18
18
18
N
5
4.07
0.30
108.30
112.37
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
5
5.20
0.30
108.30
113.50
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
6
3.62
0.60
106.00
109.62
A
A
A
O4'
C4'
C3'
DG
DG
DG
1
1
1
N
6
2.86
0.30
108.30
111.16
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
6
4.64
0.30
108.30
112.94
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
6
-5.31
0.80
102.40
97.09
A
A
A
C3'
C2'
C1'
DG
DG
DG
3
3
3
N
6
2.67
0.30
108.30
110.97
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
6
2.72
0.30
108.30
111.02
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
6
4.60
0.60
119.00
123.60
A
A
A
C4
C5
C7
DT
DT
DT
5
5
5
N
6
-7.04
0.60
122.90
115.86
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
6
-3.92
0.60
122.90
118.98
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
6
-5.48
0.60
122.90
117.42
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
6
4.19
0.30
108.30
112.49
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
6
-5.39
0.70
102.20
96.81
A
A
A
C4'
C3'
C2'
DG
DG
DG
10
10
10
N
6
4.69
0.30
108.30
112.99
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
6
3.69
0.60
106.00
109.69
B
B
B
O4'
C4'
C3'
DT
DT
DT
16
16
16
N
6
5.04
0.60
119.00
124.04
B
B
B
C4
C5
C7
DT
DT
DT
16
16
16
N
6
-7.55
0.60
122.90
115.35
B
B
B
C6
C5
C7
DT
DT
DT
16
16
16
N
6
3.80
0.60
106.00
109.80
B
B
B
O4'
C4'
C3'
DT
DT
DT
17
17
17
N
6
3.64
0.60
119.00
122.64
B
B
B
C4
C5
C7
DT
DT
DT
17
17
17
N
6
-6.18
0.60
122.90
116.72
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
6
-4.16
0.60
122.90
118.74
B
B
B
C6
C5
C7
DT
DT
DT
18
18
18
N
6
4.72
0.30
108.30
113.02
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
6
3.67
0.30
108.30
111.97
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
6
-3.08
0.50
128.60
125.52
B
B
B
N3
C4
C5
DG
DG
DG
20
20
20
N
6
1.89
0.30
108.30
110.19
B
B
B
O4'
C1'
N9
DG
DG
DG
21
21
21
N
6
-4.99
0.70
119.90
114.91
B
B
B
N3
C2
N2
DG
DG
DG
22
22
22
N
7
4.20
0.30
108.30
112.50
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
7
5.32
0.30
108.30
113.62
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
7
3.87
0.30
108.30
112.17
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
7
3.79
0.30
108.30
112.09
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
7
4.05
0.60
119.00
123.05
A
A
A
C4
C5
C7
DT
DT
DT
5
5
5
N
7
-6.47
0.60
122.90
116.43
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
7
1.95
0.30
108.30
110.25
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
7
-3.82
0.60
122.30
118.48
A
A
A
N3
C2
O2
DT
DT
DT
7
7
7
N
7
-4.94
0.60
122.90
117.96
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
7
5.53
0.30
108.30
113.83
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
7
-5.11
0.70
102.20
97.09
A
A
A
C4'
C3'
C2'
DG
DG
DG
10
10
10
N
7
6.07
0.30
108.30
114.37
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
7
-4.54
0.70
108.00
103.46
B
B
B
O4'
C1'
N9
DG
DG
DG
15
15
15
N
7
3.77
0.60
106.00
109.77
B
B
B
O4'
C4'
C3'
DT
DT
DT
16
16
16
N
7
4.88
0.60
119.00
123.88
B
B
B
C4
C5
C7
DT
DT
DT
16
16
16
N
7
-6.58
0.60
122.90
116.32
B
B
B
C6
C5
C7
DT
DT
DT
16
16
16
N
7
4.13
0.60
106.00
110.13
B
B
B
O4'
C4'
C3'
DT
DT
DT
17
17
17
N
7
-5.61
0.60
122.90
117.29
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
7
-5.48
0.60
122.90
117.42
B
B
B
C6
C5
C7
DT
DT
DT
18
18
18
N
7
5.07
0.30
108.30
113.37
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
7
1.96
0.30
108.30
110.26
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
7
2.67
0.30
108.30
110.97
B
B
B
O4'
C1'
N9
DG
DG
DG
21
21
21
N
7
2.46
0.30
108.30
110.76
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
8
3.76
0.60
106.00
109.76
A
A
A
O4'
C4'
C3'
DG
DG
DG
1
1
1
N
8
6.53
0.30
108.30
114.83
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
8
5.56
0.30
108.30
113.86
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
8
4.47
0.60
119.00
123.47
A
A
A
C4
C5
C7
DT
DT
DT
5
5
5
N
8
-7.07
0.60
122.90
115.83
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
8
8.43
1.20
115.70
124.13
A
A
A
C5'
C4'
C3'
DT
DT
DT
6
6
6
N
8
2.87
0.30
108.30
111.17
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
8
-3.77
0.60
122.30
118.53
A
A
A
N3
C2
O2
DT
DT
DT
7
7
7
N
8
-4.29
0.60
122.90
118.61
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
8
-5.77
0.70
102.20
96.43
A
A
A
C4'
C3'
C2'
DG
DG
DG
10
10
10
N
8
-3.08
0.50
128.60
125.52
A
A
A
N3
C4
C5
DG
DG
DG
10
10
10
N
8
-4.95
0.80
102.40
97.45
B
B
B
C3'
C2'
C1'
DG
DG
DG
12
12
12
N
8
8.51
0.30
108.30
116.81
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
8
2.77
0.30
108.30
111.07
B
B
B
O4'
C1'
N9
DG
DG
DG
14
14
14
N
8
5.19
0.60
119.00
124.19
B
B
B
C4
C5
C7
DT
DT
DT
16
16
16
N
8
-7.77
0.60
122.90
115.13
B
B
B
C6
C5
C7
DT
DT
DT
16
16
16
N
8
3.92
0.60
119.00
122.92
B
B
B
C4
C5
C7
DT
DT
DT
17
17
17
N
8
-6.80
0.60
122.90
116.10
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
8
3.25
0.30
108.30
111.55
B
B
B
O4'
C1'
N1
DT
DT
DT
18
18
18
N
8
-5.16
0.60
122.90
117.74
B
B
B
C6
C5
C7
DT
DT
DT
18
18
18
N
8
3.96
0.30
108.30
112.26
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
8
-3.61
0.60
122.90
119.29
B
B
B
C6
C5
C7
DT
DT
DT
19
19
19
N
8
2.62
0.30
108.30
110.92
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
8
-3.06
0.50
128.60
125.54
B
B
B
N3
C4
C5
DG
DG
DG
20
20
20
N
8
2.33
0.30
108.30
110.63
B
B
B
O4'
C1'
N9
DG
DG
DG
21
21
21
N
8
2.13
0.30
108.30
110.43
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
8
-4.42
0.70
119.90
115.48
B
B
B
N3
C2
N2
DG
DG
DG
22
22
22
N
9
3.63
0.60
106.00
109.63
A
A
A
O4'
C4'
C3'
DG
DG
DG
1
1
1
N
9
3.02
0.30
108.30
111.32
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
9
5.24
0.30
108.30
113.54
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
9
-5.47
0.80
102.40
96.93
A
A
A
C3'
C2'
C1'
DG
DG
DG
3
3
3
N
9
4.05
0.30
108.30
112.35
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
9
8.58
1.10
109.80
118.38
A
A
A
C5'
C4'
O4'
DG
DG
DG
4
4
4
N
9
-4.29
0.60
119.90
115.61
A
A
A
N1
C6
O6
DG
DG
DG
4
4
4
N
9
5.53
0.60
119.00
124.53
A
A
A
C4
C5
C7
DT
DT
DT
5
5
5
N
9
-7.92
0.60
122.90
114.98
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
9
-3.88
0.60
122.30
118.42
A
A
A
N3
C2
O2
DT
DT
DT
7
7
7
N
9
-4.51
0.60
122.90
118.39
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
9
4.29
0.30
108.30
112.59
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
9
-5.56
0.70
102.20
96.64
A
A
A
C4'
C3'
C2'
DG
DG
DG
10
10
10
N
9
-2.47
0.40
106.40
103.93
A
A
A
C8
N9
C4
DG
DG
DG
10
10
10
N
9
-4.47
0.70
119.90
115.43
A
A
A
N3
C2
N2
DG
DG
DG
10
10
10
N
9
-4.98
0.80
102.40
97.42
A
A
A
C3'
C2'
C1'
DG
DG
DG
11
11
11
N
9
5.22
0.30
108.30
113.52
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
9
4.36
0.60
119.00
123.36
B
B
B
C4
C5
C7
DT
DT
DT
16
16
16
N
9
-6.95
0.60
122.90
115.95
B
B
B
C6
C5
C7
DT
DT
DT
16
16
16
N
9
-6.04
0.60
122.90
116.86
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
9
3.09
0.30
108.30
111.39
B
B
B
O4'
C1'
N1
DT
DT
DT
18
18
18
N
9
-4.28
0.60
122.90
118.62
B
B
B
C6
C5
C7
DT
DT
DT
18
18
18
N
9
3.02
0.30
108.30
111.32
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
9
2.50
0.30
108.30
110.80
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
9
1.92
0.30
108.30
110.22
B
B
B
O4'
C1'
N9
DG
DG
DG
21
21
21
N
9
2.72
0.30
108.30
111.02
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
10
3.71
0.60
106.00
109.71
A
A
A
O4'
C4'
C3'
DG
DG
DG
1
1
1
N
10
4.17
0.30
108.30
112.47
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
10
4.51
0.30
108.30
112.81
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
10
-4.92
0.80
102.40
97.48
A
A
A
C3'
C2'
C1'
DG
DG
DG
3
3
3
N
10
4.39
0.30
108.30
112.69
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
10
4.26
0.60
119.00
123.26
A
A
A
C4
C5
C7
DT
DT
DT
5
5
5
N
10
-7.16
0.60
122.90
115.74
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
10
2.47
0.30
108.30
110.77
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
10
-4.14
0.60
122.30
118.16
A
A
A
N3
C2
O2
DT
DT
DT
7
7
7
N
10
-4.39
0.60
122.90
118.51
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
10
3.51
0.30
108.30
111.81
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
10
-4.80
0.70
119.90
115.10
A
A
A
N3
C2
N2
DG
DG
DG
9
9
9
N
10
-5.37
0.70
102.20
96.83
A
A
A
C4'
C3'
C2'
DG
DG
DG
10
10
10
N
10
1.89
0.30
108.30
110.19
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
10
4.90
0.30
108.30
113.20
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
10
5.15
0.60
119.00
124.15
B
B
B
C4
C5
C7
DT
DT
DT
16
16
16
N
10
-7.42
0.60
122.90
115.48
B
B
B
C6
C5
C7
DT
DT
DT
16
16
16
N
10
4.10
0.60
119.00
123.10
B
B
B
C4
C5
C7
DT
DT
DT
17
17
17
N
10
-6.35
0.60
122.90
116.55
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
10
3.58
0.30
108.30
111.88
B
B
B
O4'
C1'
N1
DT
DT
DT
18
18
18
N
10
-5.19
0.60
122.90
117.71
B
B
B
C6
C5
C7
DT
DT
DT
18
18
18
N
10
3.33
0.30
108.30
111.63
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
10
3.75
0.30
108.30
112.05
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
10
3.17
0.30
108.30
111.47
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
10
-4.79
0.70
119.90
115.11
B
B
B
N3
C2
N2
DG
DG
DG
22
22
22
N
THE SOLUTION STRUCTURE OF D(G4T4G3)2
1
N
N
1
N
N
hydrog
TYPE_6_PAIR
A
DG
1
A
N7
DG
1
1_555
B
DG
15
B
N2
DG
4
1_555
hydrog
TYPE_6_PAIR
A
DG
1
A
O6
DG
1
1_555
B
DG
15
B
N1
DG
4
1_555
hydrog
TYPE_6_PAIR
A
DG
1
A
N1
DG
1
1_555
B
DG
20
B
O6
DG
9
1_555
hydrog
TYPE_6_PAIR
A
DG
1
A
N2
DG
1
1_555
B
DG
20
B
N7
DG
9
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
N1
DG
2
1_555
B
DG
14
B
O6
DG
3
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
N2
DG
2
1_555
B
DG
14
B
N7
DG
3
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
N7
DG
2
1_555
B
DG
21
B
N2
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
O6
DG
2
1_555
B
DG
21
B
N1
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N7
DG
3
1_555
B
DG
13
B
N2
DG
2
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
O6
DG
3
1_555
B
DG
13
B
N1
DG
2
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N1
DG
3
1_555
B
DG
22
B
O6
DG
11
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N2
DG
3
1_555
B
DG
22
B
N7
DG
11
1_555
hydrog
DT-DT MISPAIR
A
DT
5
A
N3
DT
5
1_555
A
DT
8
A
O4
DT
8
1_555
hydrog
TYPE_6_PAIR
A
DG
9
A
N1
DG
9
1_555
B
DG
13
B
O6
DG
2
1_555
hydrog
TYPE_6_PAIR
A
DG
9
A
N2
DG
9
1_555
B
DG
13
B
N7
DG
2
1_555
hydrog
TYPE_6_PAIR
A
DG
9
A
N7
DG
9
1_555
B
DG
22
B
N2
DG
11
1_555
hydrog
TYPE_6_PAIR
A
DG
9
A
O6
DG
9
1_555
B
DG
22
B
N1
DG
11
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
N7
DG
10
1_555
B
DG
14
B
N2
DG
3
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
O6
DG
10
1_555
B
DG
14
B
N1
DG
3
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
N1
DG
10
1_555
B
DG
21
B
O6
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
N2
DG
10
1_555
B
DG
21
B
N7
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
11
A
N1
DG
11
1_555
B
DG
15
B
O6
DG
4
1_555
hydrog
TYPE_6_PAIR
A
DG
11
A
N2
DG
11
1_555
B
DG
15
B
N7
DG
4
1_555
hydrog
TYPE_6_PAIR
A
DG
11
A
N7
DG
11
1_555
B
DG
20
B
N2
DG
9
1_555
hydrog
TYPE_6_PAIR
A
DG
11
A
O6
DG
11
1_555
B
DG
20
B
N1
DG
9
1_555
hydrog
DG-DT MISPAIR
B
DG
15
B
N2
DG
4
1_555
B
DT
18
B
O4
DT
7
1_555
hydrog
DT-DT MISPAIR
B
DT
16
B
O2
DT
5
1_555
B
DT
18
B
N3
DT
7
1_555
DNA
G-quartet, cation coordination, telomeric repeat, DNA
1LVS
PDB
1
1LVS
1
11
1LVS
1
11
1LVS
A
1
1
11
12
22
1LVS
12
22
1LVS
B
1
1
11