0.016609 0.009589 0.000000 0.000000 0.019179 0.000000 0.000000 0.000000 0.010485 0.00000 0.00000 0.00000 Gassner, N.C. Baase, W.A. Mooers, B.H.M. Busam, R.D. Weaver, L.H. Lindstrom, J.D. Quillin, M.L. Matthews, B.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 60.207 60.207 95.375 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C4 H10 O2 S2 154.251 2-HYDROXYETHYL DISULFIDE non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking K 1 39.098 POTASSIUM ION non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N C N 139 N O N 140 N C N 141 N S N 142 N S N 143 N C N 144 N C N 145 N O N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N N N 157 S C N 158 N C N 159 N O N 160 N C Y 161 N C Y 162 N N Y 163 N C Y 164 N C Y 165 N N N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N O N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 S C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N K N 203 N N N 204 S C N 205 N C N 206 N O N 207 N C N 208 N C N 209 N C N 210 N C N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N N N 226 S C N 227 N C N 228 N O N 229 N C N 230 N C N 231 N C N 232 N C N 233 N N N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C N 255 N C N 256 N S N 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C Y 275 N C Y 276 N C Y 277 N C Y 278 N C Y 279 N C Y 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 S C N 295 N C N 296 N O N 297 N C N 298 N C N 299 N C N 300 N O N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N N N 311 S C N 312 N C N 313 N O N 314 N C N 315 N O N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N N N 325 S C N 326 N C N 327 N O N 328 R C N 329 N O N 330 N C N 331 N O N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N N N 342 S C N 343 N C N 344 N O N 345 N C Y 346 N C Y 347 N C Y 348 N C Y 349 N N Y 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C N 355 N O N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N N N 369 S C N 370 N C N 371 N O N 372 N C Y 373 N C Y 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N C N 379 N O N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N N N 393 S C N 394 N C N 395 N O N 396 N C N 397 N C N 398 N C N 399 N O N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing Y 157 N sing Y 158 N doub Y 159 N doub N 160 N sing Y 161 N sing N 162 N sing Y 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N doub N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing Y 265 N doub Y 266 N sing Y 267 N sing N 268 N sing Y 269 N doub N 270 N sing Y 271 N doub N 272 N sing Y 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N doub N 330 N sing N 331 N sing N 332 N sing N 333 N sing Y 334 N doub Y 335 N sing Y 336 N sing N 337 N sing Y 338 N doub Y 339 N sing Y 340 N sing N 341 N sing Y 342 N sing Y 343 N doub N 344 N sing Y 345 N doub N 346 N sing Y 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing Y 362 N doub Y 363 N sing Y 364 N sing N 365 N sing Y 366 N doub N 367 N sing Y 368 N doub N 369 N sing Y 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N doub N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing NE Biophys.Chem. BICIAZ 0829 0301-4622 100 325 340 10.1016/S0301-4622(02)00290-9 12646375 Multiple methionine substitutions are tolerated in T4 lysozyme and have coupled effects on folding and stability. 2003 10.2210/pdb1lw9/pdb pdb_00001lw9 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 MIRRORS IMAGE PLATE 2002-03-14 RIGAKU RAXIS IV YALE MIRRORS SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH3R 18628.363 LYSOZYME 3.2.1.17 C54T,C97A 1 man polymer 39.098 POTASSIUM ION 1 syn non-polymer 35.453 CHLORIDE ION 2 syn non-polymer 154.251 2-HYDROXYETHYL DISULFIDE 1 syn non-polymer 18.015 water 198 nat water Lysis protein, Muramidase, Endolysin no no MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YKNL MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YKNL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n T4-like viruses Enterobacteria phage T4 sensu lato Escherichia sample 10665 Enterobacteria phage T4 562 Escherichia coli RR1 plasmid phs1403 1 2.68 53.8 1) Working and test sets were not combined during the last cycles of refinement. 2) OVERALL B-VALUES: B11=B12=B22=2.5 B33=-4.99 B13=B23=0.00 6.7 pH 6.7 database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Database references Derived calculations Data collection Refinement description 1 0 2003-05-20 1 1 2008-04-28 1 2 2011-07-13 1 3 2021-10-27 1 4 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id T4 lysozyme with mutations C54T/L84M/V87M/L91M/C97A/L99M/V111M/L118M/L121M/L133M T4 lysozyme with mutations C54T/L84MSE/V87MSE/L91MSE/C97A/L99MSE/G110R/V111MSE/L118MSE/L121MSE/L133MSE/F153MSE T4 LYSOZYME WITH MUTATIONS C54T/L84MSE/V87MSE/L91MSE/C97A/L99MSE/I100MSE/V103MSE/G110R/V111MSE/L118MSE/L121MSE/L133MSE RCSB Y RCSB 2002-05-30 REL REL K POTASSIUM ION CL CHLORIDE ION HED 2-HYDROXYETHYL DISULFIDE HOH water 1L63 PDB ENTRY 1L63 PDB experimental model K 169 2 K K 169 A CL 173 3 CL CL 173 A CL 178 3 CL CL 178 A HED 170 4 HED HED 170 A HOH 171 5 HOH HOH 171 A HOH 172 5 HOH HOH 172 A HOH 174 5 HOH HOH 174 A HOH 175 5 HOH HOH 175 A HOH 177 5 HOH HOH 177 A HOH 179 5 HOH HOH 179 A HOH 180 5 HOH HOH 180 A HOH 181 5 HOH HOH 181 A HOH 182 5 HOH HOH 182 A HOH 183 5 HOH HOH 183 A HOH 184 5 HOH HOH 184 A HOH 185 5 HOH HOH 185 A HOH 186 5 HOH HOH 186 A HOH 187 5 HOH HOH 187 A HOH 188 5 HOH HOH 188 A HOH 189 5 HOH HOH 189 A HOH 190 5 HOH HOH 190 A HOH 191 5 HOH HOH 191 A HOH 192 5 HOH HOH 192 A HOH 193 5 HOH HOH 193 A HOH 194 5 HOH HOH 194 A HOH 195 5 HOH HOH 195 A HOH 196 5 HOH HOH 196 A HOH 197 5 HOH HOH 197 A HOH 200 5 HOH HOH 200 A HOH 201 5 HOH HOH 201 A HOH 202 5 HOH HOH 202 A HOH 204 5 HOH HOH 204 A HOH 206 5 HOH HOH 206 A HOH 207 5 HOH HOH 207 A HOH 208 5 HOH HOH 208 A HOH 209 5 HOH HOH 209 A HOH 211 5 HOH HOH 211 A HOH 213 5 HOH HOH 213 A HOH 214 5 HOH HOH 214 A HOH 215 5 HOH HOH 215 A HOH 216 5 HOH HOH 216 A HOH 217 5 HOH HOH 217 A HOH 218 5 HOH HOH 218 A HOH 219 5 HOH HOH 219 A HOH 220 5 HOH HOH 220 A HOH 221 5 HOH HOH 221 A HOH 222 5 HOH HOH 222 A HOH 223 5 HOH HOH 223 A HOH 224 5 HOH HOH 224 A HOH 225 5 HOH HOH 225 A HOH 226 5 HOH HOH 226 A HOH 227 5 HOH HOH 227 A HOH 228 5 HOH HOH 228 A HOH 230 5 HOH HOH 230 A HOH 231 5 HOH HOH 231 A HOH 232 5 HOH HOH 232 A HOH 233 5 HOH HOH 233 A HOH 234 5 HOH HOH 234 A HOH 236 5 HOH HOH 236 A HOH 237 5 HOH HOH 237 A HOH 238 5 HOH HOH 238 A HOH 239 5 HOH HOH 239 A HOH 240 5 HOH HOH 240 A HOH 242 5 HOH HOH 242 A HOH 244 5 HOH HOH 244 A HOH 245 5 HOH HOH 245 A HOH 246 5 HOH HOH 246 A HOH 247 5 HOH HOH 247 A HOH 248 5 HOH HOH 248 A HOH 249 5 HOH HOH 249 A HOH 250 5 HOH HOH 250 A HOH 251 5 HOH HOH 251 A HOH 253 5 HOH HOH 253 A HOH 254 5 HOH HOH 254 A HOH 256 5 HOH HOH 256 A HOH 257 5 HOH HOH 257 A HOH 258 5 HOH HOH 258 A HOH 259 5 HOH HOH 259 A HOH 260 5 HOH HOH 260 A HOH 261 5 HOH HOH 261 A HOH 262 5 HOH HOH 262 A HOH 266 5 HOH HOH 266 A HOH 269 5 HOH HOH 269 A HOH 270 5 HOH HOH 270 A HOH 272 5 HOH HOH 272 A HOH 273 5 HOH HOH 273 A HOH 274 5 HOH HOH 274 A HOH 276 5 HOH HOH 276 A HOH 278 5 HOH HOH 278 A HOH 279 5 HOH HOH 279 A HOH 281 5 HOH HOH 281 A HOH 282 5 HOH HOH 282 A HOH 283 5 HOH HOH 283 A HOH 284 5 HOH HOH 284 A HOH 285 5 HOH HOH 285 A HOH 286 5 HOH HOH 286 A HOH 288 5 HOH HOH 288 A HOH 291 5 HOH HOH 291 A HOH 292 5 HOH HOH 292 A HOH 293 5 HOH HOH 293 A HOH 294 5 HOH HOH 294 A HOH 295 5 HOH HOH 295 A HOH 296 5 HOH HOH 296 A HOH 297 5 HOH HOH 297 A HOH 299 5 HOH HOH 299 A HOH 300 5 HOH HOH 300 A HOH 301 5 HOH HOH 301 A HOH 302 5 HOH HOH 302 A HOH 304 5 HOH HOH 304 A HOH 306 5 HOH HOH 306 A HOH 307 5 HOH HOH 307 A HOH 308 5 HOH HOH 308 A HOH 311 5 HOH HOH 311 A HOH 312 5 HOH HOH 312 A HOH 313 5 HOH HOH 313 A HOH 314 5 HOH HOH 314 A HOH 315 5 HOH HOH 315 A HOH 317 5 HOH HOH 317 A HOH 319 5 HOH HOH 319 A HOH 320 5 HOH HOH 320 A HOH 322 5 HOH HOH 322 A HOH 401 5 HOH HOH 401 A HOH 403 5 HOH HOH 403 A HOH 404 5 HOH HOH 404 A HOH 405 5 HOH HOH 405 A HOH 406 5 HOH HOH 406 A HOH 407 5 HOH HOH 407 A HOH 408 5 HOH HOH 408 A HOH 409 5 HOH HOH 409 A HOH 410 5 HOH HOH 410 A HOH 411 5 HOH HOH 411 A HOH 412 5 HOH HOH 412 A HOH 413 5 HOH HOH 413 A HOH 414 5 HOH HOH 414 A HOH 415 5 HOH HOH 415 A HOH 416 5 HOH HOH 416 A HOH 417 5 HOH HOH 417 A HOH 418 5 HOH HOH 418 A HOH 419 5 HOH HOH 419 A HOH 420 5 HOH HOH 420 A HOH 421 5 HOH HOH 421 A HOH 422 5 HOH HOH 422 A HOH 423 5 HOH HOH 423 A HOH 424 5 HOH HOH 424 A HOH 425 5 HOH HOH 425 A HOH 426 5 HOH HOH 426 A HOH 427 5 HOH HOH 427 A HOH 428 5 HOH HOH 428 A HOH 429 5 HOH HOH 429 A HOH 430 5 HOH HOH 430 A HOH 431 5 HOH HOH 431 A HOH 432 5 HOH HOH 432 A HOH 433 5 HOH HOH 433 A HOH 434 5 HOH HOH 434 A HOH 435 5 HOH HOH 435 A HOH 436 5 HOH HOH 436 A HOH 437 5 HOH HOH 437 A HOH 438 5 HOH HOH 438 A HOH 439 5 HOH HOH 439 A HOH 440 5 HOH HOH 440 A HOH 441 5 HOH HOH 441 A HOH 442 5 HOH HOH 442 A HOH 443 5 HOH HOH 443 A HOH 444 5 HOH HOH 444 A HOH 445 5 HOH HOH 445 A HOH 446 5 HOH HOH 446 A HOH 447 5 HOH HOH 447 A HOH 448 5 HOH HOH 448 A HOH 449 5 HOH HOH 449 A HOH 450 5 HOH HOH 450 A HOH 451 5 HOH HOH 451 A HOH 453 5 HOH HOH 453 A HOH 454 5 HOH HOH 454 A HOH 455 5 HOH HOH 455 A HOH 456 5 HOH HOH 456 A HOH 457 5 HOH HOH 457 A HOH 460 5 HOH HOH 460 A HOH 461 5 HOH HOH 461 A HOH 462 5 HOH HOH 462 A HOH 463 5 HOH HOH 463 A HOH 464 5 HOH HOH 464 A HOH 466 5 HOH HOH 466 A HOH 467 5 HOH HOH 467 A HOH 468 5 HOH HOH 468 A HOH 469 5 HOH HOH 469 A HOH 470 5 HOH HOH 470 A HOH 472 5 HOH HOH 472 A HOH 473 5 HOH HOH 473 A HOH 474 5 HOH HOH 474 A HOH 475 5 HOH HOH 475 A HOH 476 5 HOH HOH 476 A HOH 477 5 HOH HOH 477 A HOH 478 5 HOH HOH 478 A HOH 480 5 HOH HOH 480 A HOH 482 5 HOH HOH 482 A HOH 491 5 HOH HOH 491 A HOH 492 5 HOH HOH 492 A HOH 493 5 HOH HOH 493 A HOH 494 5 HOH HOH 494 A HOH 495 5 HOH HOH 495 A HOH 496 5 HOH HOH 496 A HOH 497 5 HOH HOH 497 A MET 1 n 1 MET 1 A ASN 2 n 2 ASN 2 A ILE 3 n 3 ILE 3 A PHE 4 n 4 PHE 4 A GLU 5 n 5 GLU 5 A MET 6 n 6 MET 6 A LEU 7 n 7 LEU 7 A ARG 8 n 8 ARG 8 A ILE 9 n 9 ILE 9 A ASP 10 n 10 ASP 10 A GLU 11 n 11 GLU 11 A GLY 12 n 12 GLY 12 A LEU 13 n 13 LEU 13 A ARG 14 n 14 ARG 14 A LEU 15 n 15 LEU 15 A LYS 16 n 16 LYS 16 A ILE 17 n 17 ILE 17 A TYR 18 n 18 TYR 18 A LYS 19 n 19 LYS 19 A ASP 20 n 20 ASP 20 A THR 21 n 21 THR 21 A GLU 22 n 22 GLU 22 A GLY 23 n 23 GLY 23 A TYR 24 n 24 TYR 24 A TYR 25 n 25 TYR 25 A THR 26 n 26 THR 26 A ILE 27 n 27 ILE 27 A GLY 28 n 28 GLY 28 A ILE 29 n 29 ILE 29 A GLY 30 n 30 GLY 30 A HIS 31 n 31 HIS 31 A LEU 32 n 32 LEU 32 A LEU 33 n 33 LEU 33 A THR 34 n 34 THR 34 A LYS 35 n 35 LYS 35 A SER 36 n 36 SER 36 A PRO 37 n 37 PRO 37 A SER 38 n 38 SER 38 A LEU 39 n 39 LEU 39 A ASN 40 n 40 ASN 40 A ALA 41 n 41 ALA 41 A ALA 42 n 42 ALA 42 A LYS 43 n 43 LYS 43 A SER 44 n 44 SER 44 A GLU 45 n 45 GLU 45 A LEU 46 n 46 LEU 46 A ASP 47 n 47 ASP 47 A LYS 48 n 48 LYS 48 A ALA 49 n 49 ALA 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A ARG 52 n 52 ARG 52 A ASN 53 n 53 ASN 53 A THR 54 n 54 THR 54 A ASN 55 n 55 ASN 55 A GLY 56 n 56 GLY 56 A VAL 57 n 57 VAL 57 A ILE 58 n 58 ILE 58 A THR 59 n 59 THR 59 A LYS 60 n 60 LYS 60 A ASP 61 n 61 ASP 61 A GLU 62 n 62 GLU 62 A ALA 63 n 63 ALA 63 A GLU 64 n 64 GLU 64 A LYS 65 n 65 LYS 65 A LEU 66 n 66 LEU 66 A PHE 67 n 67 PHE 67 A ASN 68 n 68 ASN 68 A GLN 69 n 69 GLN 69 A ASP 70 n 70 ASP 70 A VAL 71 n 71 VAL 71 A ASP 72 n 72 ASP 72 A ALA 73 n 73 ALA 73 A ALA 74 n 74 ALA 74 A VAL 75 n 75 VAL 75 A ARG 76 n 76 ARG 76 A GLY 77 n 77 GLY 77 A ILE 78 n 78 ILE 78 A LEU 79 n 79 LEU 79 A ARG 80 n 80 ARG 80 A ASN 81 n 81 ASN 81 A ALA 82 n 82 ALA 82 A LYS 83 n 83 LYS 83 A LEU 84 n 84 LEU 84 A LYS 85 n 85 LYS 85 A PRO 86 n 86 PRO 86 A VAL 87 n 87 VAL 87 A TYR 88 n 88 TYR 88 A ASP 89 n 89 ASP 89 A SER 90 n 90 SER 90 A LEU 91 n 91 LEU 91 A ASP 92 n 92 ASP 92 A ALA 93 n 93 ALA 93 A VAL 94 n 94 VAL 94 A ARG 95 n 95 ARG 95 A ARG 96 n 96 ARG 96 A ALA 97 n 97 ALA 97 A ALA 98 n 98 ALA 98 A LEU 99 n 99 LEU 99 A ILE 100 n 100 ILE 100 A ASN 101 n 101 ASN 101 A MET 102 n 102 MET 102 A VAL 103 n 103 VAL 103 A PHE 104 n 104 PHE 104 A GLN 105 n 105 GLN 105 A MET 106 n 106 MET 106 A GLY 107 n 107 GLY 107 A GLU 108 n 108 GLU 108 A THR 109 n 109 THR 109 A GLY 110 n 110 GLY 110 A VAL 111 n 111 VAL 111 A ALA 112 n 112 ALA 112 A GLY 113 n 113 GLY 113 A PHE 114 n 114 PHE 114 A THR 115 n 115 THR 115 A ASN 116 n 116 ASN 116 A SER 117 n 117 SER 117 A LEU 118 n 118 LEU 118 A ARG 119 n 119 ARG 119 A MET 120 n 120 MET 120 A LEU 121 n 121 LEU 121 A GLN 122 n 122 GLN 122 A GLN 123 n 123 GLN 123 A LYS 124 n 124 LYS 124 A ARG 125 n 125 ARG 125 A TRP 126 n 126 TRP 126 A ASP 127 n 127 ASP 127 A GLU 128 n 128 GLU 128 A ALA 129 n 129 ALA 129 A ALA 130 n 130 ALA 130 A VAL 131 n 131 VAL 131 A ASN 132 n 132 ASN 132 A LEU 133 n 133 LEU 133 A ALA 134 n 134 ALA 134 A LYS 135 n 135 LYS 135 A SER 136 n 136 SER 136 A ARG 137 n 137 ARG 137 A TRP 138 n 138 TRP 138 A TYR 139 n 139 TYR 139 A ASN 140 n 140 ASN 140 A GLN 141 n 141 GLN 141 A THR 142 n 142 THR 142 A PRO 143 n 143 PRO 143 A ASN 144 n 144 ASN 144 A ARG 145 n 145 ARG 145 A ALA 146 n 146 ALA 146 A LYS 147 n 147 LYS 147 A ARG 148 n 148 ARG 148 A VAL 149 n 149 VAL 149 A ILE 150 n 150 ILE 150 A THR 151 n 151 THR 151 A THR 152 n 152 THR 152 A PHE 153 n 153 PHE 153 A ARG 154 n 154 ARG 154 A THR 155 n 155 THR 155 A GLY 156 n 156 GLY 156 A THR 157 n 157 THR 157 A TRP 158 n 158 TRP 158 A ASP 159 n 159 ASP 159 A ALA 160 n 160 ALA 160 A TYR 161 n 161 TYR 161 A LYS 162 n 162 LYS 162 A ASN 163 n 163 ASN 163 A LEU 164 n 164 LEU 164 A 0.2 0.197 0.254 1776 5 author_defined_assembly 1 monomeric A GLU 11 A OE1 GLU 11 1_555 A K 169 B K K 1_555 A GLU 11 A O GLU 11 1_555 84.2 A GLU 11 A OE1 GLU 11 1_555 A K 169 B K K 1_555 A TYR 18 A OH TYR 18 1_555 116.1 A GLU 11 A O GLU 11 1_555 A K 169 B K K 1_555 A TYR 18 A OH TYR 18 1_555 89.6 A GLU 11 A OE1 GLU 11 1_555 A K 169 B K K 1_555 A HOH 204 F O HOH 1_555 56.4 A GLU 11 A O GLU 11 1_555 A K 169 B K K 1_555 A HOH 204 F O HOH 1_555 130.5 A TYR 18 A OH TYR 18 1_555 A K 169 B K K 1_555 A HOH 204 F O HOH 1_555 83.7 A GLU 11 A OE1 GLU 11 1_555 A K 169 B K K 1_555 A HOH 207 F O HOH 1_555 75.2 A GLU 11 A O GLU 11 1_555 A K 169 B K K 1_555 A HOH 207 F O HOH 1_555 82.3 A TYR 18 A OH TYR 18 1_555 A K 169 B K K 1_555 A HOH 207 F O HOH 1_555 165.5 A HOH 204 F O HOH 1_555 A K 169 B K K 1_555 A HOH 207 F O HOH 1_555 110.7 A GLU 11 A OE1 GLU 11 1_555 A K 169 B K K 1_555 A HOH 304 F O HOH 1_555 123.4 A GLU 11 A O GLU 11 1_555 A K 169 B K K 1_555 A HOH 304 F O HOH 1_555 131.0 A TYR 18 A OH TYR 18 1_555 A K 169 B K K 1_555 A HOH 304 F O HOH 1_555 107.8 A HOH 204 F O HOH 1_555 A K 169 B K K 1_555 A HOH 304 F O HOH 1_555 97.3 A HOH 207 F O HOH 1_555 A K 169 B K K 1_555 A HOH 304 F O HOH 1_555 69.7 A GLU 11 A OE1 GLU 11 1_555 A K 169 B K K 1_555 A HOH 405 F O HOH 1_555 53.8 A GLU 11 A O GLU 11 1_555 A K 169 B K K 1_555 A HOH 405 F O HOH 1_555 118.6 A TYR 18 A OH TYR 18 1_555 A K 169 B K K 1_555 A HOH 405 F O HOH 1_555 145.5 A HOH 204 F O HOH 1_555 A K 169 B K K 1_555 A HOH 405 F O HOH 1_555 63.1 A HOH 207 F O HOH 1_555 A K 169 B K K 1_555 A HOH 405 F O HOH 1_555 48.2 A HOH 304 F O HOH 1_555 A K 169 B K K 1_555 A HOH 405 F O HOH 1_555 69.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 18 A N TYR 18 A O THR 26 A O THR 26 A N ILE 27 A N ILE 27 A O HIS 31 A O HIS 31 1 7.44 0.90 118.30 125.74 A A A CB CG OD1 ASP ASP ASP 10 10 10 N 1 9.37 0.90 118.30 127.67 A A A CB CG OD1 ASP ASP ASP 20 20 20 N 1 -7.18 0.90 118.30 111.12 A A A CB CG OD2 ASP ASP ASP 20 20 20 N 1 -3.66 0.60 121.00 117.34 A A A CB CG CD2 TYR TYR TYR 24 24 24 N 1 9.33 0.90 118.30 127.63 A A A CB CG OD1 ASP ASP ASP 47 47 47 N 1 -8.16 0.90 118.30 110.14 A A A CB CG OD2 ASP ASP ASP 47 47 47 N 1 6.02 0.90 118.30 124.32 A A A CB CG OD1 ASP ASP ASP 61 61 61 N 1 -5.47 0.90 118.30 112.83 A A A CB CG OD2 ASP ASP ASP 61 61 61 N 1 6.79 0.90 118.30 125.09 A A A CB CG OD1 ASP ASP ASP 70 70 70 N 1 -6.92 0.90 118.30 111.38 A A A CB CG OD2 ASP ASP ASP 70 70 70 N 1 4.97 0.50 120.30 125.27 A A A NE CZ NH1 ARG ARG ARG 76 76 76 N 1 3.43 0.50 120.30 123.73 A A A NE CZ NH1 ARG ARG ARG 80 80 80 N 1 -3.23 0.50 120.30 117.07 A A A NE CZ NH2 ARG ARG ARG 80 80 80 N 1 5.99 0.90 118.30 124.29 A A A CB CG OD1 ASP ASP ASP 89 89 89 N 1 -5.41 0.90 118.30 112.89 A A A CB CG OD2 ASP ASP ASP 89 89 89 N 1 5.49 0.90 118.30 123.79 A A A CB CG OD1 ASP ASP ASP 92 92 92 N 1 -3.16 0.50 120.30 117.14 A A A NE CZ NH2 ARG ARG ARG 95 95 95 N 1 3.76 0.50 120.30 124.06 A A A NE CZ NH1 ARG ARG ARG 119 119 119 N 1 -4.26 0.50 120.30 116.04 A A A NE CZ NH2 ARG ARG ARG 119 119 119 N 1 8.00 0.90 118.30 126.30 A A A CB CG OD1 ASP ASP ASP 127 127 127 N 1 4.80 0.50 120.30 125.10 A A A NE CZ NH1 ARG ARG ARG 137 137 137 A A A N 1 3.89 0.50 120.30 124.19 A A A NE CZ NH1 ARG ARG ARG 145 145 145 N 1 4.84 0.50 120.30 125.14 A A A NE CZ NH1 ARG ARG ARG 154 154 154 N 1 -3.99 0.50 120.30 116.31 A A A NE CZ NH2 ARG ARG ARG 154 154 154 N 1 5.55 0.90 118.30 123.85 A A A CB CG OD1 ASP ASP ASP 159 159 159 N 1 -5.85 0.90 118.30 112.45 A A A CB CG OD2 ASP ASP ASP 159 159 159 N 1 A ILE 29 -104.32 76.23 1 A ARG 125 -100.15 74.83 2.5 2.5 0.00 2.5 0.00 -4.99 THE USE OF RFREE FOR THIS STRUCTURE during refinement was not very valid since the starting model had been refined against 1.75 Angstrom room temperature data (~15000 reflections). Nonetheless, for the benefit of future workers, this structure (1LW9) was NOT refined against both the test and working sets during the final stage of refinement. 0.254 0.197 0.2 0.2 1.45 23.00 1776 35772 33992 5 94.0 RANDOM 1 TNT BCORRELATION LIBRARY THROUGHOUT 0.000 MOLECULAR REPLACEMENT PDB ENTRY 1L63 TNT'S TNTGEO_V010.DAT TNT'S MODEL 232.25 0.86 1.45 23.00 206 1540 11 0 1323 0.017 2.641 0 21.800 1.450 27.100 1LW9 35919 0.000 0.075 0.075 1 4.8000 5.400 99.4 0.316 1.45 1.53 2.100 0.316 3.30 99.0 data reduction MOSFLM data scaling SCALA refinement TNT data scaling CCP4 (SCALA) phasing TNT Multiple methionine substitutions are tolerated in T4 lysozyme and have coupled effects on folding and stability 1 N N 2 N N 3 N N 3 N N 4 N N 5 N N A ASN 2 A ASN 2 HELX_P A GLY 12 A GLY 12 1 1 11 A SER 38 A SER 38 HELX_P A GLY 51 A GLY 51 1 2 14 A THR 59 A THR 59 HELX_P A ASN 81 A ASN 81 1 3 23 A LYS 83 A LYS 83 HELX_P A LEU 91 A LEU 91 1 4 9 A ASP 92 A ASP 92 HELX_P A GLY 107 A GLY 107 1 5 16 A GLY 107 A GLY 107 HELX_P A GLY 113 A GLY 113 1 6 7 A PHE 114 A PHE 114 HELX_P A GLN 123 A GLN 123 1 7 10 A ARG 125 A ARG 125 HELX_P A ALA 134 A ALA 134 1 8 10 A SER 136 A SER 136 HELX_P A THR 142 A THR 142 1 9 7 A THR 142 A THR 142 HELX_P A GLY 156 A GLY 156 1 10 15 metalc 3.063 A GLU 11 A OE1 GLU 11 1_555 A K 169 B K K 1_555 metalc 2.913 A GLU 11 A O GLU 11 1_555 A K 169 B K K 1_555 metalc 2.981 A TYR 18 A OH TYR 18 1_555 A K 169 B K K 1_555 metalc 2.950 A K 169 B K K 1_555 A HOH 204 F O HOH 1_555 metalc 2.922 A K 169 B K K 1_555 A HOH 207 F O HOH 1_555 metalc 2.938 A K 169 B K K 1_555 A HOH 304 F O HOH 1_555 metalc 3.595 A K 169 B K K 1_555 A HOH 405 F O HOH 1_555 HYDROLASE hydrolase (o-glycosyl), T4 lysozyme, methionine core mutant, protein engineering, protein folding, HYDROLASE LYS_BPT4 UNP 1 1 P00720 MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YKNL 1 164 1LW9 1 164 P00720 A 1 1 164 1 CYS engineered mutation THR 54 1LW9 A P00720 UNP 54 54 1 CYS engineered mutation ALA 97 1LW9 A P00720 UNP 97 97 3 anti-parallel anti-parallel A ARG 14 A ARG 14 A LYS 19 A LYS 19 A TYR 25 A TYR 25 A GLY 28 A GLY 28 A HIS 31 A HIS 31 A LEU 32 A LEU 32 BINDING SITE FOR RESIDUE K A 169 A K 169 Software 5 BINDING SITE FOR RESIDUE CL A 173 A CL 173 Software 6 BINDING SITE FOR RESIDUE CL A 178 A CL 178 Software 2 BINDING SITE FOR RESIDUE HED A 170 A HED 170 Software 8 A GLU 11 A GLU 11 5 1_555 A TYR 18 A TYR 18 5 1_555 A HOH 204 F HOH 5 1_555 A HOH 207 F HOH 5 1_555 A HOH 304 F HOH 5 1_555 A LYS 124 A LYS 124 6 4_655 A THR 142 A THR 142 6 1_555 A ASN 144 A ASN 144 6 1_555 A ARG 145 A ARG 145 6 1_555 A HOH 209 F HOH 6 1_555 A HOH 291 F HOH 6 1_555 A LYS 135 A LYS 135 2 3_665 A HOH 220 F HOH 2 3_665 A PHE 4 A PHE 4 8 1_555 A ASN 68 A ASN 68 8 1_555 A ASP 72 A ASP 72 8 1_555 A VAL 75 A VAL 75 8 1_555 A ALA 93 A ALA 93 8 5_555 A ILE 100 A ILE 100 8 5_555 A HOH 195 F HOH 8 5_555 A HOH 472 F HOH 8 1_555 154 P 32 2 1