0.008130 0.004694 0.000000 0.000000 0.009388 0.000000 0.000000 0.000000 0.004724 0.00000 0.00000 0.00000 Moure, C.M. Gimble, F.S. Quiocho, F.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 123.000 123.000 211.700 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat.Struct.Biol. NSBIEW 2024 1072-8368 9 764 770 10.1038/nsb840 12219083 Crystal structure of the intein homing endonuclease PI-SceI bound to its recognition sequence. 2002 US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 89 555 564 10.1016/S0092-8674(00)80237-8 Crystal structure of PI-SceI, a homing endonuclease with protein splicing activity 1997 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 200 1 1 CCD ADSC QUANTUM 4 MAD M x-ray 1 0.9792 1.0 0.9789 1.0 0.9611 1.0 1.0 1.0 14-BM-D APS 0.9792, 0.9789, 0.9611 SYNCHROTRON APS BEAMLINE 14-BM-D 14-BM-C APS 1.0 SYNCHROTRON APS BEAMLINE 14-BM-C 11599.467 PI-SceI DNA recognition region top strand 1 syn polymer 11172.185 PI-SceI DNA recognition region bottom strand 1 syn polymer 51379.051 ENDONUCLEASE PI-SCEI 3.1.-.- 1 man polymer 40.078 CALCIUM ION 2 syn non-polymer PI-SceI, VMA-derived endonuclease, VDE, SCE VMA intein no no (DC)(DT)(DC)(DT)(DA)(DT)(DG)(DT)(DC)(DG)(DG)(DG)(DT)(DG)(DC)(DG)(DG)(DA)(DG)(DA) (DA)(DA)(DG)(DA)(DG)(DG)(DT)(DA)(DA)(DT)(DG)(DA)(DA)(DA)(DT)(DG)(DG) CTCTATGTCGGGTGCGGAGAAAGAGGTAATGAAATGG B polydeoxyribonucleotide no no (DG)(DC)(DC)(DA)(DT)(DT)(DT)(DC)(DA)(DT)(DT)(DA)(DC)(DC)(DT)(DC)(DT)(DT)(DT)(DC) (DT)(DC)(DC)(DG)(DC)(DA)(DC)(DC)(DC)(DG)(DA)(DC)(DA)(DT)(DA)(DG)(DA) GCCATTTCATTACCTCTTTCTCCGCACCCGACATAGA C polydeoxyribonucleotide no yes CFAKGTNVL(MSE)ADGSIECIENIEVGNKV(MSE)GKDGRPREVIKLPRGRET(MSE)YSVVQKSQHRAHKSDSSREVP ELLKFTCNATHELVVRTPRSVRRLSRTIKGVEYFEVITFE(MSE)GQKKAPDGRIVELVKEVSKSYPISEGPERANELVE SYRKASNKAYFEWTIEARDLSLLGSHVRKATYQTYAPILYENDHFFDY(MSE)QKSKFHLTIEGPKVLAYLLGLWIGDGL SDRATFSVDSRDTSL(MSE)ERVTEYAEKLNLCAEYKDRKEPQVAKTVNLYSKVVRGNGIRNNLNTENPLWDAIVGLGFL KDGVKNIPSFLSTDNIGTRETFLAGLIDSDGYVTDEHGIKATIKTIHTSVRDGLVSLARSLGLVVSVNAEPAKVD(MSE) NGTKHKISYAIY(MSE)SGGDVLLNVLSKCAGSKKFRPAPAAAFARECRGFYFELQELKEDDYYGITLSDDSDHQFLLAN QVVVHN CFAKGTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKLPRGRETMYSVVQKSQHRAHKSDSSREVPELLKFTCNATHE LVVRTPRSVRRLSRTIKGVEYFEVITFEMGQKKAPDGRIVELVKEVSKSYPISEGPERANELVESYRKASNKAYFEWTIE ARDLSLLGSHVRKATYQTYAPILYENDHFFDYMQKSKFHLTIEGPKVLAYLLGLWIGDGLSDRATFSVDSRDTSLMERVT EYAEKLNLCAEYKDRKEPQVAKTVNLYSKVVRGNGIRNNLNTENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETFLA GLIDSDGYVTDEHGIKATIKTIHTSVRDGLVSLARSLGLVVSVNAEPAKVDMNGTKHKISYAIYMSGGDVLLNVLSKCAG SKKFRPAPAAAFARECRGFYFELQELKEDDYYGITLSDDSDHQFLLANQVVVHN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces Escherichia sample VMA1 4932 Saccharomyces cerevisiae 562 Escherichia coli DL41 (DE3) PLASMID PT7PI-SceI 2 3.08 60.06 VAPOR DIFFUSION, HANGING DROP 7.5 PEG 200, na hepes, calcium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 PEG 200 1 na hepes 1 CaCl2 1 CaCl2 2 na hepes 2 -12.131 1 20 B 2 C 37 -2.136 B_DT2:DA37_C 1 1.923 0.151 -0.308 -0.299 -13.572 1 19 B 3 C 36 1.368 B_DC3:DG36_C 2 2.572 0.247 0.867 -0.186 -2.150 1 20 B 4 C 35 -0.642 B_DT4:DA35_C 3 -9.193 -0.335 1.150 -0.160 -7.866 1 20 B 5 C 34 4.947 B_DA5:DT34_C 4 1.926 -0.186 0.532 0.000 12.969 1 20 B 6 C 33 -2.964 B_DT6:DA33_C 5 -11.807 0.020 -0.614 0.187 -10.455 1 19 B 7 C 32 1.080 B_DG7:DC32_C 6 12.612 -0.312 0.123 -0.043 6.872 1 20 B 8 C 31 1.571 B_DT8:DA31_C 7 8.951 0.063 -0.653 -0.235 -0.323 1 19 B 9 C 30 4.059 B_DC9:DG30_C 8 -11.708 0.214 0.580 -0.063 1.177 1 19 B 10 C 29 3.109 B_DG10:DC29_C 9 -12.755 -0.188 -0.885 0.062 4.496 1 19 B 11 C 28 -1.346 B_DG11:DC28_C 10 1.015 0.093 0.243 0.097 13.237 1 19 B 12 C 27 -5.339 B_DG12:DC27_C 11 2.423 0.074 -0.382 -0.036 2.573 1 20 B 13 C 26 -2.699 B_DT13:DA26_C 12 -10.989 -0.228 0.142 -0.182 -6.784 1 19 B 14 C 25 -6.065 B_DG14:DC25_C 13 -16.873 -0.106 0.794 -0.123 -12.454 1 19 B 15 C 24 -4.387 B_DC15:DG24_C 14 9.784 0.168 0.126 -0.014 2.427 1 19 B 16 C 23 -4.778 B_DG16:DC23_C 15 -10.364 -0.136 -0.038 0.016 -22.349 1 19 B 17 C 22 -3.451 B_DG17:DC22_C 16 -3.898 0.366 -0.341 0.236 -32.669 1 20 B 18 C 21 -21.571 B_DA18:DT21_C 17 10.514 0.968 -1.315 0.021 -10.680 1 19 B 19 C 20 -0.623 B_DG19:DC20_C 18 -0.467 -0.118 -0.764 -0.034 17.359 1 20 B 20 C 19 -11.129 B_DA20:DT19_C 19 -20.446 0.406 0.320 0.176 12.776 1 20 B 21 C 18 8.789 B_DA21:DT18_C 20 -23.591 0.129 -0.021 0.108 14.217 1 20 B 22 C 17 0.372 B_DA22:DT17_C 21 -20.048 -0.021 0.511 0.110 4.365 1 19 B 23 C 16 1.461 B_DG23:DC16_C 22 -1.024 -0.001 -0.213 -0.003 -13.150 1 20 B 24 C 15 -1.814 B_DA24:DT15_C 23 -2.064 -0.045 0.375 -0.216 0.192 1 19 B 25 C 14 -0.811 B_DG25:DC14_C 24 -11.525 0.049 0.878 0.065 11.551 1 19 B 26 C 13 -0.238 B_DG26:DC13_C 25 -4.307 -0.107 1.512 -0.177 6.994 1 20 B 27 C 12 3.933 B_DT27:DA12_C 26 -16.513 -0.039 -0.202 0.121 -14.751 1 20 B 28 C 11 2.893 B_DA28:DT11_C 27 -0.908 0.273 -0.905 -0.165 -8.553 1 20 B 29 C 10 2.058 B_DA29:DT10_C 28 -14.896 -0.040 -0.684 -0.126 15.284 1 20 B 30 C 9 -4.023 B_DT30:DA9_C 29 1.559 -0.146 -0.343 0.065 0.761 1 19 B 31 C 8 -1.944 B_DG31:DC8_C 30 -2.223 -0.269 -0.045 -0.039 12.186 1 20 B 32 C 7 -1.557 B_DA32:DT7_C 31 -7.476 0.378 0.706 0.094 1.916 1 20 B 33 C 6 -0.781 B_DA33:DT6_C 32 -17.880 0.289 0.381 0.299 -2.770 1 20 B 34 C 5 -5.118 B_DA34:DT5_C 33 -10.971 0.143 0.031 0.058 -6.950 1 20 B 35 C 4 6.164 B_DT35:DA4_C 34 -15.829 -0.086 -0.111 -0.081 3.370 33.479 B B 2 3 3.268 C C 37 36 3.565 1.848 -0.098 -0.573 BB_DT2DC3:DG36DA37_CC 1 -11.070 19.576 31.593 -1.328 -1.824 3.035 37.646 B B 3 4 -12.368 C C 36 35 3.144 -7.888 -0.890 -0.736 BB_DC3DT4:DA35DG36_CC 2 6.478 -10.158 36.285 -0.154 2.190 3.331 43.339 B B 4 5 10.321 C C 35 34 3.343 7.569 0.432 0.043 BB_DT4DA5:DT34DA35_CC 3 5.208 -7.101 42.400 -0.703 -0.061 2.409 31.176 B B 5 6 1.956 C C 34 33 2.675 1.040 -0.703 -0.100 BB_DA5DT6:DA33DT34_CC 4 8.009 -15.066 30.137 -0.343 2.515 3.579 46.770 B B 6 7 13.330 C C 33 32 3.584 10.386 -0.677 0.114 BB_DT6DG7:DC32DA33_CC 5 -12.398 15.913 44.032 -0.835 -0.316 2.769 28.374 B B 7 8 10.736 C C 32 31 2.986 5.186 -0.103 -0.351 BB_DG7DT8:DA31DC32_CC 6 6.664 -13.795 27.113 -1.793 1.593 4.062 36.301 B B 8 9 -0.849 C C 31 30 4.052 -0.522 -0.592 -0.027 BB_DT8DC9:DG30DA31_CC 7 -10.094 16.405 34.911 0.049 -0.837 2.697 36.330 B B 9 10 14.055 C C 30 29 3.088 8.539 -0.953 0.617 BB_DC9DG10:DC29DG30_CC 8 11.567 -19.039 33.453 -0.112 3.021 3.187 40.452 B B 10 11 -3.825 C C 29 28 3.306 -2.620 -0.227 1.259 BB_DG10DG11:DC28DC29_CC 9 -9.515 13.891 39.278 2.117 -0.747 3.320 35.608 B B 11 12 0.509 C C 28 27 3.315 0.311 0.241 -0.194 BB_DG11DG12:DC27DC28_CC 10 3.995 -6.546 35.389 -0.362 0.198 3.552 44.586 B B 12 13 -15.962 C C 27 26 3.953 -11.976 0.112 1.054 BB_DG12DT13:DA26DC27_CC 11 0.129 -0.172 43.027 2.675 -0.133 3.051 47.920 B B 13 14 -17.281 C C 26 25 3.841 -13.854 -0.067 2.351 BB_DT13DG14:DC25DA26_CC 12 -2.091 2.609 45.942 4.078 -0.096 3.854 30.547 B B 14 15 7.595 C C 25 24 3.692 3.987 0.857 1.094 BB_DG14DC15:DG24DC25_CC 13 2.279 -4.342 30.208 1.159 -1.102 2.994 40.333 B B 15 16 -1.112 C C 24 23 2.964 -0.766 -0.996 1.409 BB_DC15DG16:DC23DG24_CC 14 -2.608 3.785 40.245 2.123 1.176 2.979 38.033 B B 16 17 59.060 C C 23 22 4.669 32.378 -0.210 0.577 BB_DG16DG17:DC22DC23_CC 15 -3.771 6.878 19.868 -5.580 -0.431 4.061 33.269 B B 17 18 21.694 C C 22 21 3.941 12.135 -1.717 0.717 BB_DG17DA18:DT21DC22_CC 16 -2.685 4.799 30.921 -1.322 2.429 2.650 22.558 B B 18 19 -10.485 C C 21 20 3.027 -3.992 0.534 -0.289 BB_DA18DG19:DC20DT21_CC 17 -7.979 20.957 20.740 0.583 -4.009 2.634 40.147 B B 19 20 -22.289 C C 20 19 2.985 -14.924 -0.625 0.568 BB_DG19DA20:DT19DC20_CC 18 -4.835 7.222 37.072 2.352 0.417 3.408 40.528 B B 20 21 7.996 C C 19 18 3.093 5.442 1.408 0.507 BB_DA20DA21:DT18DT19_CC 19 12.313 -18.093 38.316 0.109 -0.623 2.982 40.192 B B 21 22 -12.493 C C 18 17 3.195 -8.510 -0.295 0.786 BB_DA21DA22:DT17DT18_CC 20 -4.315 6.335 39.089 2.070 -0.040 3.377 35.710 B B 22 23 22.286 C C 17 16 3.629 13.354 0.095 -0.005 BB_DA22DG23:DC16DT17_CC 21 -0.611 1.020 33.190 -2.158 -0.254 3.352 37.986 B B 23 24 16.114 C C 16 15 3.410 10.243 -0.871 -0.173 BB_DG23DA24:DT15DC16_CC 22 -10.166 15.992 35.232 -1.671 -0.057 3.294 33.948 B B 24 25 -3.237 C C 15 14 3.287 -1.889 -0.045 -0.237 BB_DA24DG25:DC14DT15_CC 23 -1.365 2.340 33.871 -0.101 -0.143 2.705 42.872 B B 25 26 -20.986 C C 14 13 2.742 -14.991 0.228 -0.543 BB_DG25DG26:DC13DC14_CC 24 -6.199 8.679 39.819 0.552 -0.848 3.143 36.873 B B 26 27 9.602 C C 13 12 3.388 5.937 0.222 -0.577 BB_DG26DT27:DA12DC13_CC 25 12.340 -19.957 34.318 -1.746 1.382 3.660 37.690 B B 27 28 28.544 C C 12 11 3.893 17.715 0.165 0.454 BB_DT27DA28:DT11DA12_CC 26 4.444 -7.161 33.111 -2.136 0.456 3.048 35.027 B B 28 29 -0.348 C C 11 10 3.039 -0.209 -0.253 0.151 BB_DA28DA29:DT10DT11_CC 27 -2.761 4.591 34.921 0.281 0.033 2.944 25.433 B B 29 30 -4.769 C C 10 9 2.936 -2.097 0.201 -0.146 BB_DA29DT30:DA9DT10_CC 28 1.169 -2.660 25.321 0.210 -0.154 3.807 36.828 B B 30 31 22.947 C C 9 8 3.906 14.100 0.720 0.328 BB_DT30DG31:DC8DA9_CC 29 5.275 -8.584 33.708 -1.847 -0.254 2.905 33.340 B B 31 32 19.421 C C 8 7 3.119 10.905 -0.216 -0.146 BB_DG31DA32:DT7DC8_CC 30 -5.043 8.982 31.157 -1.983 -0.423 3.601 38.836 B B 32 33 -3.759 C C 7 6 3.580 -2.495 -0.012 -0.706 BB_DA32DA33:DT6DT7_CC 31 3.610 -5.440 38.596 -0.727 0.502 3.180 36.362 B B 33 34 -0.288 C C 6 5 3.142 -0.180 -0.718 -0.261 BB_DA33DA34:DT5DT6_CC 32 -2.179 3.494 36.299 -0.394 0.857 3.327 27.221 B B 34 35 1.194 C C 5 4 3.339 0.562 0.121 -0.504 BB_DA34DT35:DA4DT5_CC 33 -0.351 0.745 27.213 -1.213 -0.346 repository Initial release Version format compliance Version format compliance 1 0 2002-09-27 1 1 2008-04-28 1 2 2011-07-13 PI-SCeI, a homing endonuclease with protein splicing activity Crystal structure of the intein homing endonuclease PI_SceI bound to its substrate DNA (Ca2+ free) RCSB Y RCSB 2002-06-03 REL REL CA CALCIUM ION CA 501 4 CA CA 501 A CA 502 4 CA CA 502 A n 1 1 B T 2 n 2 DT 2 B C 3 n 3 DC 3 B T 4 n 4 DT 4 B A 5 n 5 DA 5 B T 6 n 6 DT 6 B G 7 n 7 DG 7 B T 8 n 8 DT 8 B C 9 n 9 DC 9 B G 10 n 10 DG 10 B G 11 n 11 DG 11 B G 12 n 12 DG 12 B T 13 n 13 DT 13 B G 14 n 14 DG 14 B C 15 n 15 DC 15 B G 16 n 16 DG 16 B G 17 n 17 DG 17 B A 18 n 18 DA 18 B G 19 n 19 DG 19 B A 20 n 20 DA 20 B A 21 n 21 DA 21 B A 22 n 22 DA 22 B G 23 n 23 DG 23 B A 24 n 24 DA 24 B G 25 n 25 DG 25 B G 26 n 26 DG 26 B T 27 n 27 DT 27 B A 28 n 28 DA 28 B A 29 n 29 DA 29 B T 30 n 30 DT 30 B G 31 n 31 DG 31 B A 32 n 32 DA 32 B A 33 n 33 DA 33 B A 34 n 34 DA 34 B T 35 n 35 DT 35 B n 36 36 B n 37 37 B n 1 1 C n 2 2 C n 3 3 C A 4 n 4 DA 4 C T 5 n 5 DT 5 C T 6 n 6 DT 6 C T 7 n 7 DT 7 C C 8 n 8 DC 8 C A 9 n 9 DA 9 C T 10 n 10 DT 10 C T 11 n 11 DT 11 C A 12 n 12 DA 12 C C 13 n 13 DC 13 C C 14 n 14 DC 14 C T 15 n 15 DT 15 C C 16 n 16 DC 16 C T 17 n 17 DT 17 C T 18 n 18 DT 18 C T 19 n 19 DT 19 C C 20 n 20 DC 20 C T 21 n 21 DT 21 C C 22 n 22 DC 22 C C 23 n 23 DC 23 C G 24 n 24 DG 24 C C 25 n 25 DC 25 C A 26 n 26 DA 26 C C 27 n 27 DC 27 C C 28 n 28 DC 28 C C 29 n 29 DC 29 C G 30 n 30 DG 30 C A 31 n 31 DA 31 C C 32 n 32 DC 32 C A 33 n 33 DA 33 C T 34 n 34 DT 34 C A 35 n 35 DA 35 C G 36 n 36 DG 36 C A 37 n 37 DA 37 C CYS 1 n 1 CYS 1 A PHE 2 n 2 PHE 2 A ALA 3 n 3 ALA 3 A LYS 4 n 4 LYS 4 A GLY 5 n 5 GLY 5 A THR 6 n 6 THR 6 A ASN 7 n 7 ASN 7 A VAL 8 n 8 VAL 8 A LEU 9 n 9 LEU 9 A MSE 10 n 10 MSE 10 A ALA 11 n 11 ALA 11 A ASP 12 n 12 ASP 12 A GLY 13 n 13 GLY 13 A SER 14 n 14 SER 14 A ILE 15 n 15 ILE 15 A GLU 16 n 16 GLU 16 A CYS 17 n 17 CYS 17 A ILE 18 n 18 ILE 18 A GLU 19 n 19 GLU 19 A ASN 20 n 20 ASN 20 A ILE 21 n 21 ILE 21 A GLU 22 n 22 GLU 22 A VAL 23 n 23 VAL 23 A GLY 24 n 24 GLY 24 A ASN 25 n 25 ASN 25 A LYS 26 n 26 LYS 26 A VAL 27 n 27 VAL 27 A MSE 28 n 28 MSE 28 A GLY 29 n 29 GLY 29 A LYS 30 n 30 LYS 30 A ASP 31 n 31 ASP 31 A GLY 32 n 32 GLY 32 A ARG 33 n 33 ARG 33 A PRO 34 n 34 PRO 34 A ARG 35 n 35 ARG 35 A GLU 36 n 36 GLU 36 A VAL 37 n 37 VAL 37 A ILE 38 n 38 ILE 38 A LYS 39 n 39 LYS 39 A LEU 40 n 40 LEU 40 A PRO 41 n 41 PRO 41 A ARG 42 n 42 ARG 42 A GLY 43 n 43 GLY 43 A ARG 44 n 44 ARG 44 A GLU 45 n 45 GLU 45 A THR 46 n 46 THR 46 A MSE 47 n 47 MSE 47 A TYR 48 n 48 TYR 48 A SER 49 n 49 SER 49 A VAL 50 n 50 VAL 50 A VAL 51 n 51 VAL 51 A GLN 52 n 52 GLN 52 A LYS 53 n 53 LYS 53 A SER 54 n 54 SER 54 A GLN 55 n 55 GLN 55 A HIS 56 n 56 HIS 56 A ARG 57 n 57 ARG 57 A ALA 58 n 58 ALA 58 A HIS 59 n 59 HIS 59 A LYS 60 n 60 LYS 60 A SER 61 n 61 SER 61 A ASP 62 n 62 ASP 62 A SER 63 n 63 SER 63 A SER 64 n 64 SER 64 A ARG 65 n 65 ARG 65 A GLU 66 n 66 GLU 66 A VAL 67 n 67 VAL 67 A PRO 68 n 68 PRO 68 A GLU 69 n 69 GLU 69 A LEU 70 n 70 LEU 70 A LEU 71 n 71 LEU 71 A LYS 72 n 72 LYS 72 A PHE 73 n 73 PHE 73 A THR 74 n 74 THR 74 A CYS 75 n 75 CYS 75 A ASN 76 n 76 ASN 76 A ALA 77 n 77 ALA 77 A THR 78 n 78 THR 78 A HIS 79 n 79 HIS 79 A GLU 80 n 80 GLU 80 A LEU 81 n 81 LEU 81 A VAL 82 n 82 VAL 82 A VAL 83 n 83 VAL 83 A ARG 84 n 84 ARG 84 A THR 85 n 85 THR 85 A PRO 86 n 86 PRO 86 A ARG 87 n 87 ARG 87 A SER 88 n 88 SER 88 A VAL 89 n 89 VAL 89 A ARG 90 n 90 ARG 90 A ARG 91 n 91 ARG 91 A LEU 92 n 92 LEU 92 A SER 93 n 93 SER 93 A ARG 94 n 94 ARG 94 A THR 95 n 95 THR 95 A ILE 96 n 96 ILE 96 A LYS 97 n 97 LYS 97 A GLY 98 n 98 GLY 98 A VAL 99 n 99 VAL 99 A n 100 100 A n 101 101 A PHE 102 n 102 PHE 102 A GLU 103 n 103 GLU 103 A VAL 104 n 104 VAL 104 A ILE 105 n 105 ILE 105 A THR 106 n 106 THR 106 A PHE 107 n 107 PHE 107 A GLU 108 n 108 GLU 108 A MSE 109 n 109 MSE 109 A GLY 110 n 110 GLY 110 A GLN 111 n 111 GLN 111 A LYS 112 n 112 LYS 112 A LYS 113 n 113 LYS 113 A ALA 114 n 114 ALA 114 A PRO 115 n 115 PRO 115 A ASP 116 n 116 ASP 116 A GLY 117 n 117 GLY 117 A ARG 118 n 118 ARG 118 A ILE 119 n 119 ILE 119 A VAL 120 n 120 VAL 120 A GLU 121 n 121 GLU 121 A LEU 122 n 122 LEU 122 A VAL 123 n 123 VAL 123 A LYS 124 n 124 LYS 124 A GLU 125 n 125 GLU 125 A VAL 126 n 126 VAL 126 A SER 127 n 127 SER 127 A LYS 128 n 128 LYS 128 A SER 129 n 129 SER 129 A TYR 130 n 130 TYR 130 A PRO 131 n 131 PRO 131 A ILE 132 n 132 ILE 132 A SER 133 n 133 SER 133 A n 134 134 A n 135 135 A PRO 136 n 136 PRO 136 A GLU 137 n 137 GLU 137 A ARG 138 n 138 ARG 138 A ALA 139 n 139 ALA 139 A ASN 140 n 140 ASN 140 A GLU 141 n 141 GLU 141 A LEU 142 n 142 LEU 142 A VAL 143 n 143 VAL 143 A GLU 144 n 144 GLU 144 A SER 145 n 145 SER 145 A TYR 146 n 146 TYR 146 A ARG 147 n 147 ARG 147 A LYS 148 n 148 LYS 148 A ALA 149 n 149 ALA 149 A SER 150 n 150 SER 150 A ASN 151 n 151 ASN 151 A LYS 152 n 152 LYS 152 A ALA 153 n 153 ALA 153 A TYR 154 n 154 TYR 154 A PHE 155 n 155 PHE 155 A GLU 156 n 156 GLU 156 A TRP 157 n 157 TRP 157 A THR 158 n 158 THR 158 A ILE 159 n 159 ILE 159 A GLU 160 n 160 GLU 160 A ALA 161 n 161 ALA 161 A ARG 162 n 162 ARG 162 A ASP 163 n 163 ASP 163 A LEU 164 n 164 LEU 164 A SER 165 n 165 SER 165 A LEU 166 n 166 LEU 166 A LEU 167 n 167 LEU 167 A GLY 168 n 168 GLY 168 A SER 169 n 169 SER 169 A HIS 170 n 170 HIS 170 A VAL 171 n 171 VAL 171 A ARG 172 n 172 ARG 172 A LYS 173 n 173 LYS 173 A ALA 174 n 174 ALA 174 A THR 175 n 175 THR 175 A TYR 176 n 176 TYR 176 A GLN 177 n 177 GLN 177 A THR 178 n 178 THR 178 A TYR 179 n 179 TYR 179 A ALA 180 n 180 ALA 180 A PRO 181 n 181 PRO 181 A ILE 182 n 182 ILE 182 A LEU 183 n 183 LEU 183 A TYR 184 n 184 TYR 184 A GLU 185 n 185 GLU 185 A ASN 186 n 186 ASN 186 A ASP 187 n 187 ASP 187 A HIS 188 n 188 HIS 188 A PHE 189 n 189 PHE 189 A PHE 190 n 190 PHE 190 A ASP 191 n 191 ASP 191 A TYR 192 n 192 TYR 192 A MSE 193 n 193 MSE 193 A GLN 194 n 194 GLN 194 A LYS 195 n 195 LYS 195 A SER 196 n 196 SER 196 A LYS 197 n 197 LYS 197 A PHE 198 n 198 PHE 198 A HIS 199 n 199 HIS 199 A LEU 200 n 200 LEU 200 A THR 201 n 201 THR 201 A ILE 202 n 202 ILE 202 A GLU 203 n 203 GLU 203 A GLY 204 n 204 GLY 204 A PRO 205 n 205 PRO 205 A LYS 206 n 206 LYS 206 A VAL 207 n 207 VAL 207 A LEU 208 n 208 LEU 208 A ALA 209 n 209 ALA 209 A TYR 210 n 210 TYR 210 A LEU 211 n 211 LEU 211 A LEU 212 n 212 LEU 212 A GLY 213 n 213 GLY 213 A LEU 214 n 214 LEU 214 A TRP 215 n 215 TRP 215 A ILE 216 n 216 ILE 216 A GLY 217 n 217 GLY 217 A ASP 218 n 218 ASP 218 A GLY 219 n 219 GLY 219 A LEU 220 n 220 LEU 220 A SER 221 n 221 SER 221 A ASP 222 n 222 ASP 222 A ARG 223 n 223 ARG 223 A ALA 224 n 224 ALA 224 A THR 225 n 225 THR 225 A PHE 226 n 226 PHE 226 A SER 227 n 227 SER 227 A VAL 228 n 228 VAL 228 A ASP 229 n 229 ASP 229 A SER 230 n 230 SER 230 A ARG 231 n 231 ARG 231 A ASP 232 n 232 ASP 232 A THR 233 n 233 THR 233 A SER 234 n 234 SER 234 A LEU 235 n 235 LEU 235 A MSE 236 n 236 MSE 236 A GLU 237 n 237 GLU 237 A ARG 238 n 238 ARG 238 A VAL 239 n 239 VAL 239 A THR 240 n 240 THR 240 A GLU 241 n 241 GLU 241 A TYR 242 n 242 TYR 242 A ALA 243 n 243 ALA 243 A GLU 244 n 244 GLU 244 A LYS 245 n 245 LYS 245 A LEU 246 n 246 LEU 246 A ASN 247 n 247 ASN 247 A LEU 248 n 248 LEU 248 A CYS 249 n 249 CYS 249 A ALA 250 n 250 ALA 250 A n 251 251 A n 252 252 A n 253 253 A n 254 254 A n 255 255 A n 256 256 A n 257 257 A n 258 258 A n 259 259 A VAL 260 n 260 VAL 260 A ALA 261 n 261 ALA 261 A LYS 262 n 262 LYS 262 A THR 263 n 263 THR 263 A VAL 264 n 264 VAL 264 A ASN 265 n 265 ASN 265 A LEU 266 n 266 LEU 266 A TYR 267 n 267 TYR 267 A SER 268 n 268 SER 268 A n 269 269 A n 270 270 A n 271 271 A n 272 272 A n 273 273 A n 274 274 A n 275 275 A n 276 276 A n 277 277 A n 278 278 A n 279 279 A n 280 280 A n 281 281 A n 282 282 A GLU 283 n 283 GLU 283 A ASN 284 n 284 ASN 284 A PRO 285 n 285 PRO 285 A LEU 286 n 286 LEU 286 A TRP 287 n 287 TRP 287 A ASP 288 n 288 ASP 288 A ALA 289 n 289 ALA 289 A ILE 290 n 290 ILE 290 A VAL 291 n 291 VAL 291 A GLY 292 n 292 GLY 292 A LEU 293 n 293 LEU 293 A GLY 294 n 294 GLY 294 A PHE 295 n 295 PHE 295 A LEU 296 n 296 LEU 296 A LYS 297 n 297 LYS 297 A ASP 298 n 298 ASP 298 A GLY 299 n 299 GLY 299 A VAL 300 n 300 VAL 300 A LYS 301 n 301 LYS 301 A ASN 302 n 302 ASN 302 A ILE 303 n 303 ILE 303 A PRO 304 n 304 PRO 304 A SER 305 n 305 SER 305 A PHE 306 n 306 PHE 306 A LEU 307 n 307 LEU 307 A SER 308 n 308 SER 308 A THR 309 n 309 THR 309 A ASP 310 n 310 ASP 310 A ASN 311 n 311 ASN 311 A ILE 312 n 312 ILE 312 A GLY 313 n 313 GLY 313 A THR 314 n 314 THR 314 A ARG 315 n 315 ARG 315 A GLU 316 n 316 GLU 316 A THR 317 n 317 THR 317 A PHE 318 n 318 PHE 318 A LEU 319 n 319 LEU 319 A ALA 320 n 320 ALA 320 A GLY 321 n 321 GLY 321 A LEU 322 n 322 LEU 322 A ILE 323 n 323 ILE 323 A ASP 324 n 324 ASP 324 A SER 325 n 325 SER 325 A ASP 326 n 326 ASP 326 A GLY 327 n 327 GLY 327 A TYR 328 n 328 TYR 328 A VAL 329 n 329 VAL 329 A THR 330 n 330 THR 330 A ASP 331 n 331 ASP 331 A GLU 332 n 332 GLU 332 A HIS 333 n 333 HIS 333 A GLY 334 n 334 GLY 334 A ILE 335 n 335 ILE 335 A LYS 336 n 336 LYS 336 A ALA 337 n 337 ALA 337 A THR 338 n 338 THR 338 A ILE 339 n 339 ILE 339 A LYS 340 n 340 LYS 340 A THR 341 n 341 THR 341 A ILE 342 n 342 ILE 342 A HIS 343 n 343 HIS 343 A THR 344 n 344 THR 344 A SER 345 n 345 SER 345 A VAL 346 n 346 VAL 346 A ARG 347 n 347 ARG 347 A ASP 348 n 348 ASP 348 A GLY 349 n 349 GLY 349 A LEU 350 n 350 LEU 350 A VAL 351 n 351 VAL 351 A SER 352 n 352 SER 352 A LEU 353 n 353 LEU 353 A ALA 354 n 354 ALA 354 A ARG 355 n 355 ARG 355 A SER 356 n 356 SER 356 A LEU 357 n 357 LEU 357 A GLY 358 n 358 GLY 358 A LEU 359 n 359 LEU 359 A VAL 360 n 360 VAL 360 A VAL 361 n 361 VAL 361 A SER 362 n 362 SER 362 A VAL 363 n 363 VAL 363 A ASN 364 n 364 ASN 364 A ALA 365 n 365 ALA 365 A GLU 366 n 366 GLU 366 A PRO 367 n 367 PRO 367 A ALA 368 n 368 ALA 368 A LYS 369 n 369 LYS 369 A VAL 370 n 370 VAL 370 A ASP 371 n 371 ASP 371 A MSE 372 n 372 MSE 372 A ASN 373 n 373 ASN 373 A GLY 374 n 374 GLY 374 A THR 375 n 375 THR 375 A LYS 376 n 376 LYS 376 A HIS 377 n 377 HIS 377 A LYS 378 n 378 LYS 378 A ILE 379 n 379 ILE 379 A SER 380 n 380 SER 380 A TYR 381 n 381 TYR 381 A ALA 382 n 382 ALA 382 A ILE 383 n 383 ILE 383 A TYR 384 n 384 TYR 384 A MSE 385 n 385 MSE 385 A SER 386 n 386 SER 386 A GLY 387 n 387 GLY 387 A GLY 388 n 388 GLY 388 A ASP 389 n 389 ASP 389 A VAL 390 n 390 VAL 390 A LEU 391 n 391 LEU 391 A LEU 392 n 392 LEU 392 A ASN 393 n 393 ASN 393 A VAL 394 n 394 VAL 394 A LEU 395 n 395 LEU 395 A SER 396 n 396 SER 396 A LYS 397 n 397 LYS 397 A CYS 398 n 398 CYS 398 A ALA 399 n 399 ALA 399 A GLY 400 n 400 GLY 400 A SER 401 n 401 SER 401 A LYS 402 n 402 LYS 402 A LYS 403 n 403 LYS 403 A PHE 404 n 404 PHE 404 A ARG 405 n 405 ARG 405 A PRO 406 n 406 PRO 406 A ALA 407 n 407 ALA 407 A PRO 408 n 408 PRO 408 A ALA 409 n 409 ALA 409 A ALA 410 n 410 ALA 410 A ALA 411 n 411 ALA 411 A PHE 412 n 412 PHE 412 A ALA 413 n 413 ALA 413 A ARG 414 n 414 ARG 414 A GLU 415 n 415 GLU 415 A CYS 416 n 416 CYS 416 A ARG 417 n 417 ARG 417 A GLY 418 n 418 GLY 418 A PHE 419 n 419 PHE 419 A TYR 420 n 420 TYR 420 A PHE 421 n 421 PHE 421 A GLU 422 n 422 GLU 422 A LEU 423 n 423 LEU 423 A GLN 424 n 424 GLN 424 A GLU 425 n 425 GLU 425 A LEU 426 n 426 LEU 426 A LYS 427 n 427 LYS 427 A GLU 428 n 428 GLU 428 A ASP 429 n 429 ASP 429 A ASP 430 n 430 ASP 430 A TYR 431 n 431 TYR 431 A TYR 432 n 432 TYR 432 A GLY 433 n 433 GLY 433 A ILE 434 n 434 ILE 434 A THR 435 n 435 THR 435 A LEU 436 n 436 LEU 436 A SER 437 n 437 SER 437 A ASP 438 n 438 ASP 438 A ASP 439 n 439 ASP 439 A SER 440 n 440 SER 440 A ASP 441 n 441 ASP 441 A HIS 442 n 442 HIS 442 A GLN 443 n 443 GLN 443 A PHE 444 n 444 PHE 444 A LEU 445 n 445 LEU 445 A LEU 446 n 446 LEU 446 A ALA 447 n 447 ALA 447 A ASN 448 n 448 ASN 448 A GLN 449 n 449 GLN 449 A VAL 450 n 450 VAL 450 A VAL 451 n 451 VAL 451 A VAL 452 n 452 VAL 452 A HIS 453 n 453 HIS 453 A ASN 454 n 454 ASN 454 A author_defined_assembly 3 trimeric A ASP 326 C OD2 ASP 326 1_555 A CA 501 D CA CA 1_555 A ASP 326 C OD1 ASP 326 1_555 51.5 A ASP 326 C OD2 ASP 326 1_555 A CA 501 D CA CA 1_555 A ASP 218 C OD1 ASP 218 1_555 70.5 A ASP 326 C OD1 ASP 326 1_555 A CA 501 D CA CA 1_555 A ASP 218 C OD1 ASP 218 1_555 65.9 A ASP 326 C OD2 ASP 326 1_555 A CA 501 D CA CA 1_555 A GLY 217 C O GLY 217 1_555 69.2 A ASP 326 C OD1 ASP 326 1_555 A CA 501 D CA CA 1_555 A GLY 217 C O GLY 217 1_555 118.8 A ASP 218 C OD1 ASP 218 1_555 A CA 501 D CA CA 1_555 A GLY 217 C O GLY 217 1_555 83.1 A SER 325 C O SER 325 1_555 A CA 502 E CA CA 1_555 A ASP 218 C OD1 ASP 218 1_555 100.8 A SER 325 C O SER 325 1_555 A CA 502 E CA CA 1_555 A ASP 218 C OD2 ASP 218 1_555 62.2 A ASP 218 C OD1 ASP 218 1_555 A CA 502 E CA CA 1_555 A ASP 218 C OD2 ASP 218 1_555 47.9 A SER 325 C O SER 325 1_555 A CA 502 E CA CA 1_555 A ASP 326 C OD1 ASP 326 1_555 73.6 A ASP 218 C OD1 ASP 218 1_555 A CA 502 E CA CA 1_555 A ASP 326 C OD1 ASP 326 1_555 68.9 A ASP 218 C OD2 ASP 218 1_555 A CA 502 E CA CA 1_555 A ASP 326 C OD1 ASP 326 1_555 85.2 A MSE 10 SELENOMETHIONINE C MSE 10 MET A MSE 28 SELENOMETHIONINE C MSE 28 MET A MSE 47 SELENOMETHIONINE C MSE 47 MET A MSE 109 SELENOMETHIONINE C MSE 109 MET A MSE 193 SELENOMETHIONINE C MSE 193 MET A MSE 236 SELENOMETHIONINE C MSE 236 MET A MSE 372 SELENOMETHIONINE C MSE 372 MET A MSE 385 SELENOMETHIONINE C MSE 385 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 8 C N VAL 8 A O GLU 16 C O GLU 16 A N VAL 27 C N VAL 27 A O ARG 35 C O ARG 35 A N LYS 39 C N LYS 39 A O THR 435 C O THR 435 A O PHE 73 C O PHE 73 A N VAL 50 C N VAL 50 A N GLY 43 C N GLY 43 A O TYR 431 C O TYR 431 A N LEU 81 C N LEU 81 A O ILE 159 C O ILE 159 A N ARG 90 C N ARG 90 A O ILE 105 C O ILE 105 A N THR 106 C N THR 106 A O VAL 126 C O VAL 126 A N GLN 177 C N GLN 177 A O PHE 419 C O PHE 419 A N VAL 228 C N VAL 228 A O LYS 262 C O LYS 262 A N LYS 297 C N LYS 297 A O VAL 300 C O VAL 300 A N TYR 328 C N TYR 328 A O THR 338 C O THR 338 A N ILE 339 C N ILE 339 A O ILE 383 C O ILE 383 A O SER 380 C O SER 380 A N GLU 366 C N GLU 366 A N ASP 371 C N ASP 371 A O THR 375 C O THR 375 A N PHE 444 C N PHE 444 A O VAL 452 C O VAL 452 1 B DC 1 A DC 1 1 Y 1 B DG 36 A DG 36 1 Y 1 B DG 37 A DG 37 1 Y 1 C DG 1 B DG 1 1 Y 1 C DC 2 B DC 2 1 Y 1 C DC 3 B DC 3 1 Y 1 A GLU 100 C GLU 100 1 Y 1 A TYR 101 C TYR 101 1 Y 1 A GLU 134 C GLU 134 1 Y 1 A GLY 135 C GLY 135 1 Y 1 A GLU 251 C GLU 251 1 Y 1 A TYR 252 C TYR 252 1 Y 1 A LYS 253 C LYS 253 1 Y 1 A ASP 254 C ASP 254 1 Y 1 A ARG 255 C ARG 255 1 Y 1 A LYS 256 C LYS 256 1 Y 1 A GLU 257 C GLU 257 1 Y 1 A PRO 258 C PRO 258 1 Y 1 A GLN 259 C GLN 259 1 Y 1 A LYS 269 C LYS 269 1 Y 1 A VAL 270 C VAL 270 1 Y 1 A VAL 271 C VAL 271 1 Y 1 A ARG 272 C ARG 272 1 Y 1 A GLY 273 C GLY 273 1 Y 1 A ASN 274 C ASN 274 1 Y 1 A GLY 275 C GLY 275 1 Y 1 A ILE 276 C ILE 276 1 Y 1 A ARG 277 C ARG 277 1 Y 1 A ASN 278 C ASN 278 1 Y 1 A ASN 279 C ASN 279 1 Y 1 A LEU 280 C LEU 280 1 Y 1 A ASN 281 C ASN 281 1 Y 1 A THR 282 C THR 282 1 Y 1 B DA 24 0.070 SIDE CHAIN 1 2.44 0.30 108.30 110.74 B B B O4' C1' N1 DC DC DC 3 3 3 N 1 8.50 1.40 114.30 122.80 C C C N1 C1' C2' DT DT DT 6 6 6 N 1 1.84 0.30 108.30 110.14 C C C O4' C1' N1 DC DC DC 14 14 14 N 1 2.55 0.30 108.30 110.85 C C C O4' C1' N1 DT DT DT 21 21 21 N 1 3.15 0.30 108.30 111.45 C C C O4' C1' N1 DC DC DC 22 22 22 N 1 A PHE 2 -104.44 -156.99 1 A SER 14 -57.10 -166.15 1 A GLU 19 -67.76 30.22 1 A ASN 20 -150.48 -14.91 1 A ILE 38 -135.98 -43.17 1 A LEU 40 -118.95 76.61 1 A GLU 45 170.27 168.82 1 A GLN 55 -67.32 26.25 1 A SER 64 92.40 7.11 1 A LEU 70 -149.79 15.62 1 A LEU 71 77.95 104.61 1 A ILE 96 -98.56 -150.55 1 A LYS 97 -42.93 -0.43 1 A GLU 103 176.86 165.12 1 A ARG 118 -28.95 124.74 1 A LEU 122 172.50 -178.20 1 A LYS 128 -170.96 108.23 1 A ARG 138 -55.52 -79.56 1 A LEU 142 -54.27 -5.73 1 A SER 150 171.94 163.43 1 A ASN 151 -102.00 -60.44 1 A LYS 152 -34.32 140.33 1 A ARG 162 -46.24 -15.05 1 A GLN 177 -104.80 -166.64 1 A SER 196 -152.16 -155.84 1 A LYS 197 0.00 147.81 1 A PHE 198 -67.64 74.46 1 A ILE 202 98.00 -21.24 1 A GLU 203 -158.64 2.22 1 A LYS 206 -70.97 -80.31 1 A SER 221 -71.24 24.81 1 A ASP 222 -144.02 -6.90 1 A ALA 224 -63.47 65.11 1 A ASN 247 79.38 46.86 1 A ASP 288 -74.75 43.63 1 A ALA 289 -151.51 -55.27 1 A VAL 291 -102.33 -61.68 1 A ASN 302 179.23 129.24 1 A PHE 306 -21.76 -44.22 1 A ASN 311 -22.73 121.80 1 A ILE 312 -49.46 -70.18 1 A HIS 333 -107.67 44.80 1 A THR 341 149.40 154.41 1 A ARG 347 -43.52 -79.59 1 A ASN 373 -68.34 21.54 1 A ALA 409 -48.84 -78.64 1 A ALA 410 -99.18 -152.54 1 A SER 437 -13.47 135.41 1 A ASP 438 -64.24 41.86 1 A ASP 439 -177.84 64.57 1 A GLN 449 84.36 11.56 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP ION.PARAM ION.TOP 69.6 10.91 11.77 0.00 10.91 0.00 -21.83 BULK SOLVENT MODEL USED 0.3100000 0.012 0.2870000 0.2930000 3.50 24.92 622 12418 11584 5.1 97.6 RANDOM 1 group for protein atoms, overall for DNA THROUGHOUT 2.0 MAD FLAT MODEL 28.1355 0.210571 0.63 0.89 3.50 24.92 0 4756 2 1394 3360 0.011 1.6 22.4 1.25 8.58 1.50 13.30 2.00 7.64 2.00 11.13 2.50 0.3945000 0.043 0.3719000 3.66 124 1881 6 4.3 96.8 3.5 30.0 1LWS 12539 12539 -3 0.0590000 0.0590000 1 18.1 9 98.6 0.2010000 3.5 3.63 1194 0.2010000 96.8 data reduction DENZO data scaling SCALEPACK refinement CNS phasing CNS ENDONUCLEASE PI-SCEI/DNA Complex Crystal structure of the intein homing endonuclease PI-SceI bound to its recognition sequence 1 N N 2 N N 3 N N 4 N N 4 N N A GLU 19 C GLU 19 HELX_P A ILE 21 C ILE 21 5 1 3 A ARG 57 C ARG 57 HELX_P A ASP 62 C ASP 62 1 2 6 A PRO 136 C PRO 136 HELX_P A LYS 148 C LYS 148 1 3 13 A ARG 162 C ARG 162 HELX_P A LEU 167 C LEU 167 5 4 6 A SER 169 C SER 169 HELX_P A THR 175 C THR 175 1 5 7 A PHE 189 C PHE 189 HELX_P A LYS 195 C LYS 195 1 6 7 A GLU 203 C GLU 203 HELX_P A ASP 218 C ASP 218 1 7 16 A ASP 232 C ASP 232 HELX_P A ASN 247 C ASN 247 1 8 16 A LEU 286 C LEU 286 HELX_P A VAL 291 C VAL 291 1 9 6 A SER 305 C SER 305 HELX_P A ASP 310 C ASP 310 5 10 6 A ASN 311 C ASN 311 HELX_P A ASP 326 C ASP 326 1 11 16 A HIS 343 C HIS 343 HELX_P A LEU 357 C LEU 357 1 12 15 A GLY 388 C GLY 388 HELX_P A SER 396 C SER 396 1 13 9 covale 1.331 A LEU 9 C C LEU 9 1_555 A MSE 10 C N MSE 10 1_555 covale 1.337 A MSE 10 C C MSE 10 1_555 A ALA 11 C N ALA 11 1_555 covale 1.335 A VAL 27 C C VAL 27 1_555 A MSE 28 C N MSE 28 1_555 covale 1.337 A MSE 28 C C MSE 28 1_555 A GLY 29 C N GLY 29 1_555 covale 1.331 A THR 46 C C THR 46 1_555 A MSE 47 C N MSE 47 1_555 covale 1.327 A MSE 47 C C MSE 47 1_555 A TYR 48 C N TYR 48 1_555 covale 1.324 A GLU 108 C C GLU 108 1_555 A MSE 109 C N MSE 109 1_555 covale 1.328 A MSE 109 C C MSE 109 1_555 A GLY 110 C N GLY 110 1_555 covale 1.325 A TYR 192 C C TYR 192 1_555 A MSE 193 C N MSE 193 1_555 covale 1.336 A MSE 193 C C MSE 193 1_555 A GLN 194 C N GLN 194 1_555 covale 1.326 A LEU 235 C C LEU 235 1_555 A MSE 236 C N MSE 236 1_555 covale 1.326 A MSE 236 C C MSE 236 1_555 A GLU 237 C N GLU 237 1_555 covale 1.329 A ASP 371 C C ASP 371 1_555 A MSE 372 C N MSE 372 1_555 covale 1.332 A MSE 372 C C MSE 372 1_555 A ASN 373 C N ASN 373 1_555 covale 1.327 A TYR 384 C C TYR 384 1_555 A MSE 385 C N MSE 385 1_555 covale 1.331 A MSE 385 C C MSE 385 1_555 A SER 386 C N SER 386 1_555 metalc 2.063 A CA 501 D CA CA 1_555 A ASP 326 C OD2 ASP 326 1_555 metalc 2.742 A CA 501 D CA CA 1_555 A ASP 326 C OD1 ASP 326 1_555 metalc 2.647 A CA 501 D CA CA 1_555 A ASP 218 C OD1 ASP 218 1_555 metalc 2.779 A CA 501 D CA CA 1_555 A GLY 217 C O GLY 217 1_555 metalc 2.852 A CA 502 E CA CA 1_555 A SER 325 C O SER 325 1_555 metalc 2.853 A CA 502 E CA CA 1_555 A ASP 218 C OD1 ASP 218 1_555 metalc 2.613 A CA 502 E CA CA 1_555 A ASP 218 C OD2 ASP 218 1_555 metalc 2.256 A CA 502 E CA CA 1_555 A ASP 326 C OD1 ASP 326 1_555 hydrog WATSON-CRICK B DT 2 A N3 DT 2 1_555 C DA 37 B N1 DA 37 1_555 hydrog WATSON-CRICK B DT 2 A O4 DT 2 1_555 C DA 37 B N6 DA 37 1_555 hydrog WATSON-CRICK B DC 3 A N3 DC 3 1_555 C DG 36 B N1 DG 36 1_555 hydrog WATSON-CRICK B DC 3 A N4 DC 3 1_555 C DG 36 B O6 DG 36 1_555 hydrog WATSON-CRICK B DC 3 A O2 DC 3 1_555 C DG 36 B N2 DG 36 1_555 hydrog WATSON-CRICK B DT 4 A N3 DT 4 1_555 C DA 35 B N1 DA 35 1_555 hydrog WATSON-CRICK B DT 4 A O4 DT 4 1_555 C DA 35 B N6 DA 35 1_555 hydrog WATSON-CRICK B DA 5 A N1 DA 5 1_555 C DT 34 B N3 DT 34 1_555 hydrog WATSON-CRICK B DA 5 A N6 DA 5 1_555 C DT 34 B O4 DT 34 1_555 hydrog WATSON-CRICK B DT 6 A N3 DT 6 1_555 C DA 33 B N1 DA 33 1_555 hydrog WATSON-CRICK B DT 6 A O4 DT 6 1_555 C DA 33 B N6 DA 33 1_555 hydrog WATSON-CRICK B DG 7 A N1 DG 7 1_555 C DC 32 B N3 DC 32 1_555 hydrog WATSON-CRICK B DG 7 A N2 DG 7 1_555 C DC 32 B O2 DC 32 1_555 hydrog WATSON-CRICK B DG 7 A O6 DG 7 1_555 C DC 32 B N4 DC 32 1_555 hydrog WATSON-CRICK B DT 8 A N3 DT 8 1_555 C DA 31 B N1 DA 31 1_555 hydrog WATSON-CRICK B DT 8 A O4 DT 8 1_555 C DA 31 B N6 DA 31 1_555 hydrog WATSON-CRICK B DC 9 A N3 DC 9 1_555 C DG 30 B N1 DG 30 1_555 hydrog WATSON-CRICK B DC 9 A N4 DC 9 1_555 C DG 30 B O6 DG 30 1_555 hydrog WATSON-CRICK B DC 9 A O2 DC 9 1_555 C DG 30 B N2 DG 30 1_555 hydrog WATSON-CRICK B DG 10 A N1 DG 10 1_555 C DC 29 B N3 DC 29 1_555 hydrog WATSON-CRICK B DG 10 A N2 DG 10 1_555 C DC 29 B O2 DC 29 1_555 hydrog WATSON-CRICK B DG 10 A O6 DG 10 1_555 C DC 29 B N4 DC 29 1_555 hydrog WATSON-CRICK B DG 11 A N1 DG 11 1_555 C DC 28 B N3 DC 28 1_555 hydrog WATSON-CRICK B DG 11 A N2 DG 11 1_555 C DC 28 B O2 DC 28 1_555 hydrog WATSON-CRICK B DG 11 A O6 DG 11 1_555 C DC 28 B N4 DC 28 1_555 hydrog WATSON-CRICK B DG 12 A N1 DG 12 1_555 C DC 27 B N3 DC 27 1_555 hydrog WATSON-CRICK B DG 12 A N2 DG 12 1_555 C DC 27 B O2 DC 27 1_555 hydrog WATSON-CRICK B DG 12 A O6 DG 12 1_555 C DC 27 B N4 DC 27 1_555 hydrog WATSON-CRICK B DT 13 A N3 DT 13 1_555 C DA 26 B N1 DA 26 1_555 hydrog WATSON-CRICK B DT 13 A O4 DT 13 1_555 C DA 26 B N6 DA 26 1_555 hydrog WATSON-CRICK B DG 14 A N1 DG 14 1_555 C DC 25 B N3 DC 25 1_555 hydrog WATSON-CRICK B DG 14 A N2 DG 14 1_555 C DC 25 B O2 DC 25 1_555 hydrog WATSON-CRICK B DG 14 A O6 DG 14 1_555 C DC 25 B N4 DC 25 1_555 hydrog WATSON-CRICK B DC 15 A N3 DC 15 1_555 C DG 24 B N1 DG 24 1_555 hydrog WATSON-CRICK B DC 15 A N4 DC 15 1_555 C DG 24 B O6 DG 24 1_555 hydrog WATSON-CRICK B DC 15 A O2 DC 15 1_555 C DG 24 B N2 DG 24 1_555 hydrog WATSON-CRICK B DG 16 A N1 DG 16 1_555 C DC 23 B N3 DC 23 1_555 hydrog WATSON-CRICK B DG 16 A N2 DG 16 1_555 C DC 23 B O2 DC 23 1_555 hydrog WATSON-CRICK B DG 16 A O6 DG 16 1_555 C DC 23 B N4 DC 23 1_555 hydrog WATSON-CRICK B DG 17 A N1 DG 17 1_555 C DC 22 B N3 DC 22 1_555 hydrog WATSON-CRICK B DG 17 A N2 DG 17 1_555 C DC 22 B O2 DC 22 1_555 hydrog WATSON-CRICK B DG 17 A O6 DG 17 1_555 C DC 22 B N4 DC 22 1_555 hydrog WATSON-CRICK B DA 18 A N1 DA 18 1_555 C DT 21 B N3 DT 21 1_555 hydrog WATSON-CRICK B DA 18 A N6 DA 18 1_555 C DT 21 B O4 DT 21 1_555 hydrog WATSON-CRICK B DG 19 A N1 DG 19 1_555 C DC 20 B N3 DC 20 1_555 hydrog WATSON-CRICK B DG 19 A N2 DG 19 1_555 C DC 20 B O2 DC 20 1_555 hydrog WATSON-CRICK B DG 19 A O6 DG 19 1_555 C DC 20 B N4 DC 20 1_555 hydrog DG-DT MISPAIR B DG 19 A N2 DG 19 1_555 C DT 21 B O2 DT 21 1_555 hydrog WATSON-CRICK B DA 20 A N1 DA 20 1_555 C DT 19 B N3 DT 19 1_555 hydrog WATSON-CRICK B DA 20 A N6 DA 20 1_555 C DT 19 B O4 DT 19 1_555 hydrog WATSON-CRICK B DA 21 A N1 DA 21 1_555 C DT 18 B N3 DT 18 1_555 hydrog WATSON-CRICK B DA 21 A N6 DA 21 1_555 C DT 18 B O4 DT 18 1_555 hydrog WATSON-CRICK B DA 22 A N1 DA 22 1_555 C DT 17 B N3 DT 17 1_555 hydrog WATSON-CRICK B DA 22 A N6 DA 22 1_555 C DT 17 B O4 DT 17 1_555 hydrog WATSON-CRICK B DG 23 A N1 DG 23 1_555 C DC 16 B N3 DC 16 1_555 hydrog WATSON-CRICK B DG 23 A N2 DG 23 1_555 C DC 16 B O2 DC 16 1_555 hydrog WATSON-CRICK B DG 23 A O6 DG 23 1_555 C DC 16 B N4 DC 16 1_555 hydrog WATSON-CRICK B DA 24 A N1 DA 24 1_555 C DT 15 B N3 DT 15 1_555 hydrog WATSON-CRICK B DA 24 A N6 DA 24 1_555 C DT 15 B O4 DT 15 1_555 hydrog DG-DC PAIR B DG 25 A O6 DG 25 1_555 C DC 13 B N4 DC 13 1_555 hydrog WATSON-CRICK B DG 25 A N1 DG 25 1_555 C DC 14 B N3 DC 14 1_555 hydrog WATSON-CRICK B DG 25 A N2 DG 25 1_555 C DC 14 B O2 DC 14 1_555 hydrog WATSON-CRICK B DG 25 A O6 DG 25 1_555 C DC 14 B N4 DC 14 1_555 hydrog WATSON-CRICK B DG 26 A N1 DG 26 1_555 C DC 13 B N3 DC 13 1_555 hydrog WATSON-CRICK B DG 26 A N2 DG 26 1_555 C DC 13 B O2 DC 13 1_555 hydrog WATSON-CRICK B DG 26 A O6 DG 26 1_555 C DC 13 B N4 DC 13 1_555 hydrog WATSON-CRICK B DT 27 A N3 DT 27 1_555 C DA 12 B N1 DA 12 1_555 hydrog WATSON-CRICK B DT 27 A O4 DT 27 1_555 C DA 12 B N6 DA 12 1_555 hydrog WATSON-CRICK B DA 28 A N1 DA 28 1_555 C DT 11 B N3 DT 11 1_555 hydrog WATSON-CRICK B DA 28 A N6 DA 28 1_555 C DT 11 B O4 DT 11 1_555 hydrog WATSON-CRICK B DA 29 A N1 DA 29 1_555 C DT 10 B N3 DT 10 1_555 hydrog WATSON-CRICK B DA 29 A N6 DA 29 1_555 C DT 10 B O4 DT 10 1_555 hydrog DA-DT PAIR B DA 29 A N1 DA 29 1_555 C DT 11 B N3 DT 11 1_555 hydrog WATSON-CRICK B DT 30 A N3 DT 30 1_555 C DA 9 B N1 DA 9 1_555 hydrog WATSON-CRICK B DT 30 A O4 DT 30 1_555 C DA 9 B N6 DA 9 1_555 hydrog WATSON-CRICK B DG 31 A N1 DG 31 1_555 C DC 8 B N3 DC 8 1_555 hydrog WATSON-CRICK B DG 31 A N2 DG 31 1_555 C DC 8 B O2 DC 8 1_555 hydrog WATSON-CRICK B DG 31 A O6 DG 31 1_555 C DC 8 B N4 DC 8 1_555 hydrog WATSON-CRICK B DA 32 A N1 DA 32 1_555 C DT 7 B N3 DT 7 1_555 hydrog WATSON-CRICK B DA 32 A N6 DA 32 1_555 C DT 7 B O4 DT 7 1_555 hydrog WATSON-CRICK B DA 33 A N1 DA 33 1_555 C DT 6 B N3 DT 6 1_555 hydrog WATSON-CRICK B DA 33 A N6 DA 33 1_555 C DT 6 B O4 DT 6 1_555 hydrog WATSON-CRICK B DA 34 A N1 DA 34 1_555 C DT 5 B N3 DT 5 1_555 hydrog WATSON-CRICK B DA 34 A N6 DA 34 1_555 C DT 5 B O4 DT 5 1_555 hydrog WATSON-CRICK B DT 35 A N3 DT 35 1_555 C DA 4 B N1 DA 4 1_555 hydrog WATSON-CRICK B DT 35 A O4 DT 35 1_555 C DA 4 B N6 DA 4 1_555 HYDROLASE/DNA homing endonuclease, intein, protein-DNA complex, endonuclease, HYDROLASE-DNA COMPLEX VATA_YEAST UNP 3 284 P17255 CFAKGTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKLPRGRETMYSVVQKSQHRAHKSDSSREVPELLKFTCNATHE LVVRTPRSVRRLSRTIKGVEYFEVITFEMGQKKAPDGRIVELVKEVSKSYPISEGPERANELVESYRKASNKAYFEWTIE ARDLSLLGSHVRKATYQTYAPILYENDHFFDYMQKSKFHLTIEGPKVLAYLLGLWIGDGLSDRATFSVDSRDTSLMERVT EYAEKLNLCAEYKDRKEPQVAKTVNLYSKVVRGNGIRNNLNTENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETFLA GLIDSDGYVTDEHGIKATIKTIHTSVRDGLVSLARSLGLVVSVNAEPAKVDMNGTKHKISYAIYMSGGDVLLNVLSKCAG SKKFRPAPAAAFARECRGFYFELQELKEDDYYGITLSDDSDHQFLLANQVVVHN 1LWS PDB 1 1LWS 1LWS PDB 2 1LWS 284 737 1LWS 1 454 P17255 A 1 1 454 1 37 1LWS 1 37 1LWS B 2 1 37 1 37 1LWS 1 37 1LWS C 3 1 37 1 MET MODIFIED RESIDUE MSE 10 1LWS A P17255 UNP 293 10 1 MET MODIFIED RESIDUE MSE 28 1LWS A P17255 UNP 311 28 1 MET MODIFIED RESIDUE MSE 47 1LWS A P17255 UNP 330 47 1 MET MODIFIED RESIDUE MSE 109 1LWS A P17255 UNP 392 109 1 MET MODIFIED RESIDUE MSE 193 1LWS A P17255 UNP 476 193 1 MET MODIFIED RESIDUE MSE 236 1LWS A P17255 UNP 519 236 1 MET MODIFIED RESIDUE MSE 372 1LWS A P17255 UNP 655 372 1 MET MODIFIED RESIDUE MSE 385 1LWS A P17255 UNP 668 385 2 3 3 2 3 2 2 2 4 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ASN 7 C ASN 7 A VAL 8 C VAL 8 A GLU 16 C GLU 16 A CYS 17 C CYS 17 A LYS 26 C LYS 26 A MSE 28 C MSE 28 A PRO 34 C PRO 34 A LYS 39 C LYS 39 A THR 435 C THR 435 A LEU 436 C LEU 436 A LYS 72 C LYS 72 A ASN 76 C ASN 76 A ARG 42 C ARG 42 A GLN 52 C GLN 52 A PHE 421 C PHE 421 A TYR 432 C TYR 432 A GLU 80 C GLU 80 A PRO 86 C PRO 86 A TYR 154 C TYR 154 A GLU 160 C GLU 160 A VAL 89 C VAL 89 A ARG 90 C ARG 90 A ILE 105 C ILE 105 A LYS 113 C LYS 113 A ILE 119 C ILE 119 A VAL 126 C VAL 126 A GLN 177 C GLN 177 A TYR 179 C TYR 179 A ARG 417 C ARG 417 A PHE 419 C PHE 419 A THR 225 C THR 225 A ASP 229 C ASP 229 A ALA 261 C ALA 261 A ASN 265 C ASN 265 A LEU 296 C LEU 296 A LYS 297 C LYS 297 A VAL 300 C VAL 300 A LYS 301 C LYS 301 A GLY 327 C GLY 327 A THR 330 C THR 330 A LYS 336 C LYS 336 A ILE 339 C ILE 339 A SER 380 C SER 380 A SER 386 C SER 386 A VAL 360 C VAL 360 A GLU 366 C GLU 366 A VAL 370 C VAL 370 A ASP 371 C ASP 371 A THR 375 C THR 375 A LYS 376 C LYS 376 A GLN 443 C GLN 443 A LEU 445 C LEU 445 A VAL 451 C VAL 451 A HIS 453 C HIS 453 BINDING SITE FOR RESIDUE CA A 501 Software 3 BINDING SITE FOR RESIDUE CA A 502 Software 3 A GLY 217 C GLY 217 3 1_555 A ASP 218 C ASP 218 3 1_555 A ASP 326 C ASP 326 3 1_555 A ASP 218 C ASP 218 3 1_555 A SER 325 C SER 325 3 1_555 A ASP 326 C ASP 326 3 1_555 179 P 65 2 2