0.010870
0.006276
0.000000
0.000000
0.012552
0.000000
0.000000
0.000000
0.004730
0.00000
0.00000
0.00000
Fromme, J.C.
Bruner, S.D.
Yang, W.
Karplus, M.
Verdine, G.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90
90
120
91.995
91.995
211.427
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C5 H6 N6 O
166.141
8-AMINOGUANINE
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H13 O6 P
200.127
PENTANE-3,4-DIOL-5-PHOSPHATE
OPEN FORM OF 1'-2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
10
204
211
10.1038/nsb902
12592398
Product-Assisted Catalysis in Base Excision DNA Repair
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2001-12-15
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
0.950
1.0
A1
CHESS
0.950
SYNCHROTRON
CHESS BEAMLINE A1
4635.010
5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'
1
syn
polymer
4398.854
5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3'
1
syn
polymer
36394.176
8-OXOGUANINE DNA GLYCOSYLASE
3.2.2.-
CORE FRAGMENT (RESIDUES 12-327)
1
man
polymer
40.078
CALCIUM ION
1
syn
non-polymer
166.141
8-AMINOGUANINE
1
syn
non-polymer
18.015
water
145
nat
water
no
no
(DG)(DG)(DT)(DA)(DG)(DA)(DC)(DC)(DT)(DG)(DG)(DA)(DC)(DG)(DC)
GGTAGACCTGGACGC
D
polydeoxyribonucleotide
no
yes
(DG)(DC)(DG)(DT)(DC)(DC)(DA)(PED)(DG)(DT)(DC)(DT)(DA)(DC)(DC)
GCGTCCAXGTCTACC
E
polydeoxyribonucleotide
no
no
AMADIGSEGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKS
QASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLC
QAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCIL
PGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL
RQSR
AMADIGSEGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKS
QASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLC
QAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCIL
PGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL
RQSR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
ogg1
9606
Homo sapiens
562
Escherichia coli
2.82
56.35
VAPOR DIFFUSION, HANGING DROP
6.3
sodium cacodylate, calcium acetate, PEG 8000, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
sodium cacodylate
1
calcium acetate
1
PEG 8000
1
-3.270
1
D
1
E
30
6.571
D_DG1:DC30_E
1
-7.313
-1.583
0.745
-0.044
-12.507
1
19
D
2
E
29
-10.275
D_DG2:DC29_E
2
2.798
-0.088
-0.182
-0.153
-7.867
1
20
D
3
E
28
-2.507
D_DT3:DA28_E
3
-7.797
-0.483
0.681
-0.013
-11.921
1
20
D
4
E
27
9.328
D_DA4:DT27_E
4
-11.323
-0.225
-0.167
-0.277
2.801
D
5
E
26
-13.449
D_DG5:DC26_E
5
-8.506
-0.226
-0.174
0.052
6.435
1
20
D
6
E
25
-3.716
D_DA6:DT25_E
6
-9.722
0.117
0.370
0.099
14.465
1
19
D
7
E
24
-0.503
D_DC7:DG24_E
7
2.032
0.423
-0.295
-0.391
-12.227
1
20
D
9
E
22
0.414
D_DT9:DA22_E
8
-14.403
-0.486
0.253
-0.179
5.658
1
19
D
10
E
21
0.438
D_DG10:DC21_E
9
-3.282
-0.575
0.266
-0.179
5.869
1
19
D
11
E
20
-0.404
D_DG11:DC20_E
10
-12.884
0.183
0.073
-0.081
-8.379
1
20
D
12
E
19
-7.498
D_DA12:DT19_E
11
-15.319
0.995
-0.132
-0.369
-2.407
1
19
D
13
E
18
-8.720
D_DC13:DG18_E
12
-9.118
-0.109
0.414
0.143
-1.157
D
14
E
17
-1.752
D_DG14:DC17_E
13
-11.216
1.646
-0.237
0.473
15.709
1
D
15
E
16
4.306
D_DC15:DG16_E
14
0.966
1.620
0.120
0.246
4.134
46.051
D
D
1
2
-6.979
E
E
30
29
4.135
-5.448
-1.024
-0.221
DD_DG1DG2:DC29DC30_EE
1
-0.029
0.037
45.745
0.311
1.306
3.397
30.093
D
D
2
3
-1.648
E
E
29
28
3.344
-0.848
-0.548
-0.645
DD_DG2DT3:DA28DC29_EE
2
-7.074
13.749
29.257
-1.061
-0.457
3.474
43.827
D
D
3
4
-0.501
E
E
28
27
3.500
-0.373
-0.066
0.204
DD_DT3DA4:DT27DA28_EE
3
4.567
-6.128
43.599
0.311
0.553
3.187
29.843
D
D
4
5
7.368
E
E
27
26
3.119
3.784
-0.786
0.521
DD_DA4DG5:DC26DT27_EE
4
-1.116
2.173
29.587
0.250
1.301
3.026
38.281
D
D
5
6
1.904
E
E
26
25
3.048
1.247
-0.048
-0.337
DD_DG5DA6:DT25DC26_EE
5
-3.878
5.923
38.072
-0.659
-0.379
3.200
30.422
D
D
6
7
2.048
E
E
25
24
3.104
1.070
0.961
-0.249
DD_DA6DC7:DG24DT25_EE
6
4.510
-8.626
30.075
-0.683
-0.957
3.054
31.986
D
D
9
10
9.753
E
E
22
21
2.983
5.347
0.395
0.869
DD_DT9DG10:DC21DA22_EE
7
-2.086
3.806
31.480
0.678
-1.068
3.423
40.982
D
D
10
11
7.881
E
E
21
20
3.357
5.501
-1.112
0.407
DD_DG10DG11:DC20DC21_EE
8
-1.698
2.433
40.592
-0.043
1.395
3.565
36.707
D
D
11
12
7.609
E
E
20
19
3.669
4.778
-0.317
-0.664
DD_DG11DA12:DT19DC20_EE
9
-1.423
2.265
36.378
-1.780
0.288
2.930
28.080
D
D
12
13
-0.082
E
E
19
18
2.988
-0.040
0.255
-1.037
DD_DA12DC13:DG18DT19_EE
10
-3.767
7.786
27.832
-2.129
-1.331
3.488
45.958
D
D
13
14
-0.231
E
E
18
17
3.470
-0.180
0.417
0.302
DD_DC13DG14:DC17DG18_EE
11
8.537
-10.992
45.200
0.403
0.257
2.808
36.667
D
D
14
15
5.144
E
E
17
16
2.921
3.229
1.406
0.202
DD_DG14DC15:DG16DC17_EE
12
-2.991
4.765
36.411
-0.067
-2.595
repository
Initial release
Version format compliance
Version format compliance
1
0
2003-02-25
1
1
2008-04-28
1
2
2011-07-13
1ebm is the Crystal Structure Of The Human 8-Oxoguanine Glycosylase (Hogg1) Bound To A Substrate Oligonucleotide
1fn7 is the Coupling Of Damage Recognition and Catalysis By A Human Base-Excision DNA Repair Protein
1hu0 is the CRYSTAL STRUCTURE OF AN HOGG1-DNA BOROHYDRIDE TRAPPED INTERMEDIATE COMPLEX
1lww is BOROHYDRIDE-TRAPPED HOGG1 INTERMEDIATE STRUCTURE CO-CRYSTALLIZED WITH 8-BROMOGUANINE
1LWY IS Borohydride-Trapped hOgg1 Intermediate without 8-oxoguanine
RCSB
Y
RCSB
2002-06-03
REL
REL
CA
CALCIUM ION
ANG
8-AMINOGUANINE
HOH
water
CA
1
4
CA
CA
153
E
AMG
150
5
ANG
ANG
328
A
HOH
103
6
HOH
HOH
103
D
HOH
117
6
HOH
HOH
117
D
HOH
136
6
HOH
HOH
136
D
HOH
137
6
HOH
HOH
137
D
HOH
144
6
HOH
HOH
144
D
HOH
150
6
HOH
HOH
150
D
HOH
151
6
HOH
HOH
151
D
HOH
152
6
HOH
HOH
152
D
HOH
6
6
HOH
HOH
6
E
HOH
47
6
HOH
HOH
47
E
HOH
60
6
HOH
HOH
60
E
HOH
74
6
HOH
HOH
74
E
HOH
76
6
HOH
HOH
76
E
HOH
107
6
HOH
HOH
107
E
HOH
1
6
HOH
HOH
329
A
HOH
2
6
HOH
HOH
330
A
HOH
3
6
HOH
HOH
331
A
HOH
4
6
HOH
HOH
332
A
HOH
5
6
HOH
HOH
333
A
HOH
7
6
HOH
HOH
334
A
HOH
8
6
HOH
HOH
335
A
HOH
9
6
HOH
HOH
336
A
HOH
10
6
HOH
HOH
337
A
HOH
11
6
HOH
HOH
338
A
HOH
12
6
HOH
HOH
339
A
HOH
13
6
HOH
HOH
340
A
HOH
14
6
HOH
HOH
341
A
HOH
15
6
HOH
HOH
342
A
HOH
16
6
HOH
HOH
343
A
HOH
17
6
HOH
HOH
344
A
HOH
18
6
HOH
HOH
345
A
HOH
19
6
HOH
HOH
346
A
HOH
20
6
HOH
HOH
347
A
HOH
21
6
HOH
HOH
348
A
HOH
22
6
HOH
HOH
349
A
HOH
23
6
HOH
HOH
350
A
HOH
24
6
HOH
HOH
351
A
HOH
25
6
HOH
HOH
352
A
HOH
26
6
HOH
HOH
353
A
HOH
27
6
HOH
HOH
354
A
HOH
28
6
HOH
HOH
355
A
HOH
29
6
HOH
HOH
356
A
HOH
30
6
HOH
HOH
357
A
HOH
31
6
HOH
HOH
358
A
HOH
32
6
HOH
HOH
359
A
HOH
33
6
HOH
HOH
360
A
HOH
34
6
HOH
HOH
361
A
HOH
35
6
HOH
HOH
362
A
HOH
36
6
HOH
HOH
363
A
HOH
37
6
HOH
HOH
364
A
HOH
38
6
HOH
HOH
365
A
HOH
39
6
HOH
HOH
366
A
HOH
40
6
HOH
HOH
367
A
HOH
41
6
HOH
HOH
368
A
HOH
42
6
HOH
HOH
369
A
HOH
43
6
HOH
HOH
370
A
HOH
44
6
HOH
HOH
371
A
HOH
45
6
HOH
HOH
372
A
HOH
46
6
HOH
HOH
373
A
HOH
48
6
HOH
HOH
374
A
HOH
49
6
HOH
HOH
375
A
HOH
50
6
HOH
HOH
376
A
HOH
51
6
HOH
HOH
377
A
HOH
52
6
HOH
HOH
378
A
HOH
53
6
HOH
HOH
379
A
HOH
54
6
HOH
HOH
380
A
HOH
55
6
HOH
HOH
381
A
HOH
56
6
HOH
HOH
382
A
HOH
57
6
HOH
HOH
383
A
HOH
58
6
HOH
HOH
384
A
HOH
59
6
HOH
HOH
385
A
HOH
61
6
HOH
HOH
386
A
HOH
62
6
HOH
HOH
387
A
HOH
63
6
HOH
HOH
388
A
HOH
64
6
HOH
HOH
389
A
HOH
65
6
HOH
HOH
390
A
HOH
66
6
HOH
HOH
391
A
HOH
67
6
HOH
HOH
392
A
HOH
68
6
HOH
HOH
393
A
HOH
69
6
HOH
HOH
394
A
HOH
70
6
HOH
HOH
395
A
HOH
71
6
HOH
HOH
396
A
HOH
72
6
HOH
HOH
397
A
HOH
75
6
HOH
HOH
398
A
HOH
77
6
HOH
HOH
399
A
HOH
78
6
HOH
HOH
400
A
HOH
79
6
HOH
HOH
401
A
HOH
80
6
HOH
HOH
402
A
HOH
81
6
HOH
HOH
403
A
HOH
82
6
HOH
HOH
404
A
HOH
84
6
HOH
HOH
405
A
HOH
85
6
HOH
HOH
406
A
HOH
88
6
HOH
HOH
407
A
HOH
90
6
HOH
HOH
408
A
HOH
92
6
HOH
HOH
409
A
HOH
93
6
HOH
HOH
410
A
HOH
94
6
HOH
HOH
411
A
HOH
96
6
HOH
HOH
412
A
HOH
97
6
HOH
HOH
413
A
HOH
98
6
HOH
HOH
414
A
HOH
99
6
HOH
HOH
415
A
HOH
100
6
HOH
HOH
416
A
HOH
101
6
HOH
HOH
417
A
HOH
102
6
HOH
HOH
418
A
HOH
104
6
HOH
HOH
419
A
HOH
105
6
HOH
HOH
420
A
HOH
106
6
HOH
HOH
421
A
HOH
108
6
HOH
HOH
422
A
HOH
109
6
HOH
HOH
423
A
HOH
110
6
HOH
HOH
424
A
HOH
111
6
HOH
HOH
425
A
HOH
112
6
HOH
HOH
426
A
HOH
113
6
HOH
HOH
427
A
HOH
114
6
HOH
HOH
428
A
HOH
115
6
HOH
HOH
429
A
HOH
116
6
HOH
HOH
430
A
HOH
118
6
HOH
HOH
431
A
HOH
119
6
HOH
HOH
432
A
HOH
120
6
HOH
HOH
433
A
HOH
121
6
HOH
HOH
434
A
HOH
122
6
HOH
HOH
435
A
HOH
123
6
HOH
HOH
436
A
HOH
124
6
HOH
HOH
437
A
HOH
125
6
HOH
HOH
438
A
HOH
126
6
HOH
HOH
439
A
HOH
127
6
HOH
HOH
440
A
HOH
128
6
HOH
HOH
441
A
HOH
129
6
HOH
HOH
442
A
HOH
130
6
HOH
HOH
443
A
HOH
131
6
HOH
HOH
444
A
HOH
132
6
HOH
HOH
445
A
HOH
133
6
HOH
HOH
446
A
HOH
134
6
HOH
HOH
447
A
HOH
135
6
HOH
HOH
448
A
HOH
138
6
HOH
HOH
449
A
HOH
139
6
HOH
HOH
450
A
HOH
140
6
HOH
HOH
451
A
HOH
141
6
HOH
HOH
452
A
HOH
142
6
HOH
HOH
453
A
HOH
143
6
HOH
HOH
454
A
HOH
145
6
HOH
HOH
455
A
HOH
146
6
HOH
HOH
456
A
HOH
147
6
HOH
HOH
457
A
HOH
148
6
HOH
HOH
458
A
HOH
149
6
HOH
HOH
459
A
GUA
1
n
1
DG
1
D
GUA
2
n
2
DG
2
D
THY
3
n
3
DT
3
D
ADE
4
n
4
DA
4
D
GUA
5
n
5
DG
5
D
ADE
6
n
6
DA
6
D
CYT
7
n
7
DC
7
D
CYT
8
n
8
DC
8
D
THY
9
n
9
DT
9
D
GUA
10
n
10
DG
10
D
GUA
11
n
11
DG
11
D
ADE
12
n
12
DA
12
D
CYT
13
n
13
DC
13
D
GUA
14
n
14
DG
14
D
CYT
15
n
15
DC
15
D
GUA
16
n
1
DG
16
E
CYT
17
n
2
DC
17
E
GUA
18
n
3
DG
18
E
THY
19
n
4
DT
19
E
CYT
20
n
5
DC
20
E
CYT
21
n
6
DC
21
E
ADE
22
n
7
DA
22
E
PED
23
n
8
PED
23
E
GUA
24
n
9
DG
24
E
THY
25
n
10
DT
25
E
CYT
26
n
11
DC
26
E
THY
27
n
12
DT
27
E
ADE
28
n
13
DA
28
E
CYT
29
n
14
DC
29
E
CYT
30
n
15
DC
30
E
n
1
4
A
n
2
5
A
n
3
6
A
n
4
7
A
n
5
8
A
GLY
9
n
6
GLY
9
A
SER
10
n
7
SER
10
A
GLU
11
n
8
GLU
11
A
GLY
12
n
9
GLY
12
A
HIS
13
n
10
HIS
13
A
ARG
14
n
11
ARG
14
A
THR
15
n
12
THR
15
A
LEU
16
n
13
LEU
16
A
ALA
17
n
14
ALA
17
A
SER
18
n
15
SER
18
A
THR
19
n
16
THR
19
A
PRO
20
n
17
PRO
20
A
ALA
21
n
18
ALA
21
A
LEU
22
n
19
LEU
22
A
TRP
23
n
20
TRP
23
A
ALA
24
n
21
ALA
24
A
SER
25
n
22
SER
25
A
ILE
26
n
23
ILE
26
A
PRO
27
n
24
PRO
27
A
CYS
28
n
25
CYS
28
A
PRO
29
n
26
PRO
29
A
ARG
30
n
27
ARG
30
A
SER
31
n
28
SER
31
A
GLU
32
n
29
GLU
32
A
LEU
33
n
30
LEU
33
A
ARG
34
n
31
ARG
34
A
LEU
35
n
32
LEU
35
A
ASP
36
n
33
ASP
36
A
LEU
37
n
34
LEU
37
A
VAL
38
n
35
VAL
38
A
LEU
39
n
36
LEU
39
A
PRO
40
n
37
PRO
40
A
SER
41
n
38
SER
41
A
GLY
42
n
39
GLY
42
A
GLN
43
n
40
GLN
43
A
SER
44
n
41
SER
44
A
PHE
45
n
42
PHE
45
A
ARG
46
n
43
ARG
46
A
TRP
47
n
44
TRP
47
A
ARG
48
n
45
ARG
48
A
GLU
49
n
46
GLU
49
A
GLN
50
n
47
GLN
50
A
SER
51
n
48
SER
51
A
PRO
52
n
49
PRO
52
A
ALA
53
n
50
ALA
53
A
HIS
54
n
51
HIS
54
A
TRP
55
n
52
TRP
55
A
SER
56
n
53
SER
56
A
GLY
57
n
54
GLY
57
A
VAL
58
n
55
VAL
58
A
LEU
59
n
56
LEU
59
A
ALA
60
n
57
ALA
60
A
ASP
61
n
58
ASP
61
A
GLN
62
n
59
GLN
62
A
VAL
63
n
60
VAL
63
A
TRP
64
n
61
TRP
64
A
THR
65
n
62
THR
65
A
LEU
66
n
63
LEU
66
A
THR
67
n
64
THR
67
A
GLN
68
n
65
GLN
68
A
THR
69
n
66
THR
69
A
GLU
70
n
67
GLU
70
A
GLU
71
n
68
GLU
71
A
GLN
72
n
69
GLN
72
A
LEU
73
n
70
LEU
73
A
HIS
74
n
71
HIS
74
A
CYS
75
n
72
CYS
75
A
THR
76
n
73
THR
76
A
VAL
77
n
74
VAL
77
A
TYR
78
n
75
TYR
78
A
ARG
79
n
76
ARG
79
A
n
77
80
A
n
78
81
A
n
79
82
A
SER
83
n
80
SER
83
A
GLN
84
n
81
GLN
84
A
ALA
85
n
82
ALA
85
A
SER
86
n
83
SER
86
A
ARG
87
n
84
ARG
87
A
PRO
88
n
85
PRO
88
A
THR
89
n
86
THR
89
A
PRO
90
n
87
PRO
90
A
ASP
91
n
88
ASP
91
A
GLU
92
n
89
GLU
92
A
LEU
93
n
90
LEU
93
A
GLU
94
n
91
GLU
94
A
ALA
95
n
92
ALA
95
A
VAL
96
n
93
VAL
96
A
ARG
97
n
94
ARG
97
A
LYS
98
n
95
LYS
98
A
TYR
99
n
96
TYR
99
A
PHE
100
n
97
PHE
100
A
GLN
101
n
98
GLN
101
A
LEU
102
n
99
LEU
102
A
ASP
103
n
100
ASP
103
A
VAL
104
n
101
VAL
104
A
THR
105
n
102
THR
105
A
LEU
106
n
103
LEU
106
A
ALA
107
n
104
ALA
107
A
GLN
108
n
105
GLN
108
A
LEU
109
n
106
LEU
109
A
TYR
110
n
107
TYR
110
A
HIS
111
n
108
HIS
111
A
HIS
112
n
109
HIS
112
A
TRP
113
n
110
TRP
113
A
GLY
114
n
111
GLY
114
A
SER
115
n
112
SER
115
A
VAL
116
n
113
VAL
116
A
ASP
117
n
114
ASP
117
A
SER
118
n
115
SER
118
A
HIS
119
n
116
HIS
119
A
PHE
120
n
117
PHE
120
A
GLN
121
n
118
GLN
121
A
GLU
122
n
119
GLU
122
A
VAL
123
n
120
VAL
123
A
ALA
124
n
121
ALA
124
A
GLN
125
n
122
GLN
125
A
LYS
126
n
123
LYS
126
A
PHE
127
n
124
PHE
127
A
GLN
128
n
125
GLN
128
A
GLY
129
n
126
GLY
129
A
VAL
130
n
127
VAL
130
A
ARG
131
n
128
ARG
131
A
LEU
132
n
129
LEU
132
A
LEU
133
n
130
LEU
133
A
ALA
134
n
131
ARG
134
A
GLN
135
n
132
GLN
135
A
ASP
136
n
133
ASP
136
A
PRO
137
n
134
PRO
137
A
ILE
138
n
135
ILE
138
A
GLU
139
n
136
GLU
139
A
CYS
140
n
137
CYS
140
A
LEU
141
n
138
LEU
141
A
PHE
142
n
139
PHE
142
A
SER
143
n
140
SER
143
A
PHE
144
n
141
PHE
144
A
ILE
145
n
142
ILE
145
A
CYS
146
n
143
CYS
146
A
SER
147
n
144
SER
147
A
SER
148
n
145
SER
148
A
ASN
149
n
146
ASN
149
A
ASN
150
n
147
ASN
150
A
ASN
151
n
148
ASN
151
A
ILE
152
n
149
ILE
152
A
ALA
153
n
150
ALA
153
A
ARG
154
n
151
ARG
154
A
ILE
155
n
152
ILE
155
A
THR
156
n
153
THR
156
A
GLY
157
n
154
GLY
157
A
MET
158
n
155
MET
158
A
VAL
159
n
156
VAL
159
A
GLU
160
n
157
GLU
160
A
ARG
161
n
158
ARG
161
A
LEU
162
n
159
LEU
162
A
CYS
163
n
160
CYS
163
A
GLN
164
n
161
GLN
164
A
ALA
165
n
162
ALA
165
A
PHE
166
n
163
PHE
166
A
GLY
167
n
164
GLY
167
A
PRO
168
n
165
PRO
168
A
ARG
169
n
166
ARG
169
A
LEU
170
n
167
LEU
170
A
ILE
171
n
168
ILE
171
A
GLN
172
n
169
GLN
172
A
LEU
173
n
170
LEU
173
A
ASP
174
n
171
ASP
174
A
ASP
175
n
172
ASP
175
A
VAL
176
n
173
VAL
176
A
THR
177
n
174
THR
177
A
TYR
178
n
175
TYR
178
A
HIS
179
n
176
HIS
179
A
GLY
180
n
177
GLY
180
A
PHE
181
n
178
PHE
181
A
PRO
182
n
179
PRO
182
A
SER
183
n
180
SER
183
A
LEU
184
n
181
LEU
184
A
GLN
185
n
182
GLN
185
A
ALA
186
n
183
ALA
186
A
LEU
187
n
184
LEU
187
A
ALA
188
n
185
ALA
188
A
GLY
189
n
186
GLY
189
A
PRO
190
n
187
PRO
190
A
GLU
191
n
188
GLU
191
A
VAL
192
n
189
VAL
192
A
GLU
193
n
190
GLU
193
A
ALA
194
n
191
ALA
194
A
HIS
195
n
192
HIS
195
A
LEU
196
n
193
LEU
196
A
ARG
197
n
194
ARG
197
A
LYS
198
n
195
LYS
198
A
LEU
199
n
196
LEU
199
A
GLY
200
n
197
GLY
200
A
LEU
201
n
198
LEU
201
A
GLY
202
n
199
GLY
202
A
TYR
203
n
200
TYR
203
A
ARG
204
n
201
ARG
204
A
ALA
205
n
202
ALA
205
A
ARG
206
n
203
ARG
206
A
TYR
207
n
204
TYR
207
A
VAL
208
n
205
VAL
208
A
SER
209
n
206
SER
209
A
ALA
210
n
207
ALA
210
A
SER
211
n
208
SER
211
A
ALA
212
n
209
ALA
212
A
ARG
213
n
210
ARG
213
A
ALA
214
n
211
ALA
214
A
ILE
215
n
212
ILE
215
A
LEU
216
n
213
LEU
216
A
GLU
217
n
214
GLU
217
A
GLU
218
n
215
GLU
218
A
GLN
219
n
216
GLN
219
A
GLY
220
n
217
GLY
220
A
GLY
221
n
218
GLY
221
A
LEU
222
n
219
LEU
222
A
ALA
223
n
220
ALA
223
A
TRP
224
n
221
TRP
224
A
LEU
225
n
222
LEU
225
A
GLN
226
n
223
GLN
226
A
GLN
227
n
224
GLN
227
A
LEU
228
n
225
LEU
228
A
ARG
229
n
226
ARG
229
A
GLU
230
n
227
GLU
230
A
SER
231
n
228
SER
231
A
SER
232
n
229
SER
232
A
TYR
233
n
230
TYR
233
A
GLU
234
n
231
GLU
234
A
GLU
235
n
232
GLU
235
A
ALA
236
n
233
ALA
236
A
HIS
237
n
234
HIS
237
A
LYS
238
n
235
LYS
238
A
ALA
239
n
236
ALA
239
A
LEU
240
n
237
LEU
240
A
CYS
241
n
238
CYS
241
A
ILE
242
n
239
ILE
242
A
LEU
243
n
240
LEU
243
A
PRO
244
n
241
PRO
244
A
GLY
245
n
242
GLY
245
A
VAL
246
n
243
VAL
246
A
GLY
247
n
244
GLY
247
A
THR
248
n
245
THR
248
A
LYS
249
n
246
LYS
249
A
VAL
250
n
247
VAL
250
A
ALA
251
n
248
ALA
251
A
ASP
252
n
249
ASP
252
A
CYS
253
n
250
CYS
253
A
ILE
254
n
251
ILE
254
A
CYS
255
n
252
CYS
255
A
LEU
256
n
253
LEU
256
A
MET
257
n
254
MET
257
A
ALA
258
n
255
ALA
258
A
LEU
259
n
256
LEU
259
A
ASP
260
n
257
ASP
260
A
LYS
261
n
258
LYS
261
A
PRO
262
n
259
PRO
262
A
GLN
263
n
260
GLN
263
A
ALA
264
n
261
ALA
264
A
VAL
265
n
262
VAL
265
A
PRO
266
n
263
PRO
266
A
VAL
267
n
264
VAL
267
A
ASP
268
n
265
ASP
268
A
VAL
269
n
266
VAL
269
A
HIS
270
n
267
HIS
270
A
MET
271
n
268
MET
271
A
TRP
272
n
269
TRP
272
A
HIS
273
n
270
HIS
273
A
ILE
274
n
271
ILE
274
A
ALA
275
n
272
ALA
275
A
GLN
276
n
273
GLN
276
A
ARG
277
n
274
ARG
277
A
ASP
278
n
275
ASP
278
A
TYR
279
n
276
TYR
279
A
SER
280
n
277
SER
280
A
TRP
281
n
278
TRP
281
A
HIS
282
n
279
HIS
282
A
PRO
283
n
280
PRO
283
A
THR
284
n
281
THR
284
A
THR
285
n
282
THR
285
A
SER
286
n
283
SER
286
A
GLN
287
n
284
GLN
287
A
ALA
288
n
285
ALA
288
A
LYS
289
n
286
LYS
289
A
GLY
290
n
287
GLY
290
A
PRO
291
n
288
PRO
291
A
SER
292
n
289
SER
292
A
PRO
293
n
290
PRO
293
A
GLN
294
n
291
GLN
294
A
THR
295
n
292
THR
295
A
ASN
296
n
293
ASN
296
A
LYS
297
n
294
LYS
297
A
GLU
298
n
295
GLU
298
A
LEU
299
n
296
LEU
299
A
GLY
300
n
297
GLY
300
A
ASN
301
n
298
ASN
301
A
PHE
302
n
299
PHE
302
A
PHE
303
n
300
PHE
303
A
ARG
304
n
301
ARG
304
A
SER
305
n
302
SER
305
A
LEU
306
n
303
LEU
306
A
TRP
307
n
304
TRP
307
A
GLY
308
n
305
GLY
308
A
PRO
309
n
306
PRO
309
A
TYR
310
n
307
TYR
310
A
ALA
311
n
308
ALA
311
A
GLY
312
n
309
GLY
312
A
TRP
313
n
310
TRP
313
A
ALA
314
n
311
ALA
314
A
GLN
315
n
312
GLN
315
A
ALA
316
n
313
ALA
316
A
VAL
317
n
314
VAL
317
A
LEU
318
n
315
LEU
318
A
PHE
319
n
316
PHE
319
A
SER
320
n
317
SER
320
A
ALA
321
n
318
ALA
321
A
ASP
322
n
319
ASP
322
A
LEU
323
n
320
LEU
323
A
ARG
324
n
321
ARG
324
A
GLN
325
n
322
GLN
325
A
n
323
326
A
n
324
327
A
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
24
C
N
ALA
21
A
O
CYS
75
C
O
CYS
72
A
O
HIS
74
C
O
HIS
71
A
N
THR
67
C
N
THR
64
A
O
LEU
66
C
O
LEU
63
A
N
TRP
55
C
N
TRP
52
A
O
SER
56
C
O
SER
53
A
N
ARG
48
C
N
ARG
45
A
N
LEU
173
C
N
LEU
170
A
O
VAL
176
C
O
VAL
173
1
A
CG
ARG
134
C
CG
ARG
131
1
Y
1
A
CD
ARG
134
C
CD
ARG
131
1
Y
1
A
NE
ARG
134
C
NE
ARG
131
1
Y
1
A
CZ
ARG
134
C
CZ
ARG
131
1
Y
1
A
NH1
ARG
134
C
NH1
ARG
131
1
Y
1
A
NH2
ARG
134
C
NH2
ARG
131
1
Y
1
A
ALA
4
C
ALA
1
1
Y
1
A
MET
5
C
MET
2
1
Y
1
A
ALA
6
C
ALA
3
1
Y
1
A
ASP
7
C
ASP
4
1
Y
1
A
ILE
8
C
ILE
5
1
Y
1
A
GLY
80
C
GLY
77
1
Y
1
A
ASP
81
C
ASP
78
1
Y
1
A
LYS
82
C
LYS
79
1
Y
1
A
SER
326
C
SER
323
1
Y
1
A
ARG
327
C
ARG
324
1
Y
1
D
D
O3'
O3'
DC
DC
15
15
1.53
1_555
11_655
1
A
LEU
22
-103.22
47.41
1
A
CYS
28
-165.98
105.30
1
A
GLN
43
-96.19
-63.10
1
A
ALA
53
59.29
19.18
1
A
THR
69
-102.36
-165.64
1
A
SER
86
-128.07
-164.55
1
A
LEU
170
-98.64
-96.15
1
A
ASP
174
57.70
-127.31
1
A
GLU
218
-159.19
-32.78
1
A
LYS
261
-112.87
78.91
1
A
THR
284
-108.21
-61.97
1
A
THR
285
-69.28
0.58
1
A
ARG
324
-69.53
52.72
0.269
0.228
2.3
50
2273
24338
22742
Random
1
THROUGHOUT
2
FOURIER SYNTHESIS
1EBM
Engh & Huber
0.35
0.3
5.0
0.30
0.24
2.3
50
145
3241
13
598
2485
0.006
1.21
21.2
0.304
0.262
2.38
210
79
2.0
50
1LWV
35481
34468
-3
0.096
1
18.1
5.2
96.7
0.56
2.0
2.07
2.8
3274
3.9
92.3
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
8-OXOGUANINE DNA GLYCOSYLASE (E.C.3.2.2.-)/DNA Complex
Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-aminoguanine
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
A
THR
19
C
THR
16
HELX_P
A
TRP
23
C
TRP
20
5
1
5
A
ARG
34
C
ARG
31
HELX_P
A
LEU
39
C
LEU
36
1
2
6
A
THR
89
C
THR
86
HELX_P
A
PHE
100
C
PHE
97
1
3
12
A
THR
105
C
THR
102
HELX_P
A
ASP
117
C
ASP
114
1
4
13
A
ASP
117
C
ASP
114
HELX_P
A
GLN
125
C
GLN
122
1
5
9
A
ASP
136
C
ASP
133
HELX_P
A
CYS
146
C
CYS
143
1
6
11
A
ASN
151
C
ASN
148
HELX_P
A
GLY
167
C
GLY
164
1
7
17
A
SER
183
C
SER
180
HELX_P
A
GLY
189
C
GLY
186
1
8
7
A
GLU
191
C
GLU
188
HELX_P
A
LEU
199
C
LEU
196
1
9
9
A
TYR
203
C
TYR
200
HELX_P
A
GLU
218
C
GLU
215
1
10
16
A
GLY
221
C
GLY
218
HELX_P
A
ARG
229
C
ARG
226
1
11
9
A
SER
232
C
SER
229
HELX_P
A
CYS
241
C
CYS
238
1
12
10
A
GLY
247
C
GLY
244
HELX_P
A
LEU
259
C
LEU
256
1
13
13
A
ASP
268
C
ASP
265
HELX_P
A
SER
280
C
SER
277
1
14
13
A
SER
292
C
SER
289
HELX_P
A
GLY
308
C
GLY
305
1
15
17
A
TYR
310
C
TYR
307
HELX_P
A
ARG
324
C
ARG
321
1
16
15
covale
1.452
E
PED
23
B
C1'
PED
8
1_555
A
LYS
249
C
NZ
LYS
246
1_555
covale
1.594
E
DA
22
B
O3'
DA
7
1_555
E
PED
23
B
P
PED
8
1_555
covale
1.607
E
PED
23
B
O3'
PED
8
1_555
E
DG
24
B
P
DG
9
1_555
metalc
2.778
E
CA
153
D
CA
CA
1_555
E
HOH
6
G
O
HOH
1_555
hydrog
DG-DC PAIR
D
DG
1
A
N1
DG
1
1_555
E
DC
30
B
O2
DC
15
1_555
hydrog
WATSON-CRICK
D
DG
2
A
N1
DG
2
1_555
E
DC
29
B
N3
DC
14
1_555
hydrog
WATSON-CRICK
D
DG
2
A
N2
DG
2
1_555
E
DC
29
B
O2
DC
14
1_555
hydrog
WATSON-CRICK
D
DG
2
A
O6
DG
2
1_555
E
DC
29
B
N4
DC
14
1_555
hydrog
WATSON-CRICK
D
DT
3
A
N3
DT
3
1_555
E
DA
28
B
N1
DA
13
1_555
hydrog
WATSON-CRICK
D
DT
3
A
O4
DT
3
1_555
E
DA
28
B
N6
DA
13
1_555
hydrog
WATSON-CRICK
D
DA
4
A
N1
DA
4
1_555
E
DT
27
B
N3
DT
12
1_555
hydrog
WATSON-CRICK
D
DA
4
A
N6
DA
4
1_555
E
DT
27
B
O4
DT
12
1_555
hydrog
DG-DC PAIR
D
DG
5
A
N1
DG
5
1_555
E
DC
26
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
D
DA
6
A
N1
DA
6
1_555
E
DT
25
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
D
DA
6
A
N6
DA
6
1_555
E
DT
25
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
D
DC
7
A
N3
DC
7
1_555
E
DG
24
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
D
DC
7
A
N4
DC
7
1_555
E
DG
24
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
D
DC
7
A
O2
DC
7
1_555
E
DG
24
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
D
DT
9
A
N3
DT
9
1_555
E
DA
22
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
D
DT
9
A
O4
DT
9
1_555
E
DA
22
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
D
DG
10
A
N1
DG
10
1_555
E
DC
21
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
D
DG
10
A
N2
DG
10
1_555
E
DC
21
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
D
DG
10
A
O6
DG
10
1_555
E
DC
21
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
D
DG
11
A
N1
DG
11
1_555
E
DC
20
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
D
DG
11
A
N2
DG
11
1_555
E
DC
20
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
D
DG
11
A
O6
DG
11
1_555
E
DC
20
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
D
DA
12
A
N1
DA
12
1_555
E
DT
19
B
N3
DT
4
1_555
hydrog
WATSON-CRICK
D
DA
12
A
N6
DA
12
1_555
E
DT
19
B
O4
DT
4
1_555
hydrog
WATSON-CRICK
D
DC
13
A
N3
DC
13
1_555
E
DG
18
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
D
DC
13
A
N4
DC
13
1_555
E
DG
18
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
D
DC
13
A
O2
DC
13
1_555
E
DG
18
B
N2
DG
3
1_555
hydrog
DG-DC PAIR
D
DG
14
A
N2
DG
14
1_555
E
DC
17
B
N3
DC
2
1_555
hydrog
DC-DG PAIR
D
DC
15
A
O2
DC
15
1_555
E
DG
16
B
N1
DG
1
1_555
HYDROLASE/DNA
DNA REPAIR, DNA GLYCOSYLASE, PROTEIN/DNA, BOROHYDRIDE, COVALENT TRAPPING, PRODUCT-ASSISTED CATALYSIS, REACTION INTERMEDIATE, HYDROLASE-DNA COMPLEX
OGG1_HUMAN
UNP
3
12
O15527
GHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPD
ELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLI
QLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVA
DCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLRQSR
1LWV
PDB
1
1LWV
1LWV
PDB
2
1LWV
12
327
1LWV
12
327
O15527
A
1
9
324
1
15
1LWV
1
15
1LWV
D
2
1
15
16
30
1LWV
16
30
1LWV
E
3
1
15
1
CLONING ARTIFACT
ALA
4
1LWV
A
O15527
UNP
1
1
CLONING ARTIFACT
MET
5
1LWV
A
O15527
UNP
2
1
CLONING ARTIFACT
ALA
6
1LWV
A
O15527
UNP
3
1
CLONING ARTIFACT
ASP
7
1LWV
A
O15527
UNP
4
1
CLONING ARTIFACT
ILE
8
1LWV
A
O15527
UNP
5
1
CLONING ARTIFACT
GLY
9
1LWV
A
O15527
UNP
6
1
CLONING ARTIFACT
SER
10
1LWV
A
O15527
UNP
7
1
CLONING ARTIFACT
GLU
11
1LWV
A
O15527
UNP
8
5
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ALA
24
C
ALA
21
A
PRO
27
C
PRO
24
A
GLN
72
C
GLN
69
A
TYR
78
C
TYR
75
A
VAL
63
C
VAL
60
A
GLN
68
C
GLN
65
A
HIS
54
C
HIS
51
A
VAL
58
C
VAL
55
A
ARG
48
C
ARG
45
A
SER
51
C
SER
48
A
ARG
169
C
ARG
166
A
LEU
173
C
LEU
170
A
VAL
176
C
VAL
173
A
HIS
179
C
HIS
176
BINDING SITE FOR RESIDUE CA E 153
Software
2
BINDING SITE FOR RESIDUE ANG A 328
Software
12
E
HOH
6
G
HOH
2
1_555
E
DA
22
B
DA
7
2
1_555
A
GLY
42
C
GLY
39
12
1_555
A
PHE
45
C
PHE
42
12
1_555
A
PHE
144
C
PHE
141
12
1_555
A
LYS
249
C
LYS
246
12
1_555
A
MET
257
C
MET
254
12
1_555
A
PRO
266
C
PRO
263
12
1_555
A
ASP
268
C
ASP
265
12
1_555
A
MET
271
C
MET
268
12
1_555
A
GLN
315
C
GLN
312
12
1_555
A
PHE
319
C
PHE
316
12
1_555
A
HOH
435
H
HOH
12
1_555
E
PED
23
B
PED
8
12
1_555
179
P 65 2 2