0.010870 0.006276 0.000000 0.000000 0.012552 0.000000 0.000000 0.000000 0.004730 0.00000 0.00000 0.00000 Fromme, J.C. Bruner, S.D. Yang, W. Karplus, M. Verdine, G.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90 90 120 91.995 91.995 211.427 C3 H7 N O2 89.093 y ALANINE L-peptide linking C5 H6 N6 O 166.141 8-AMINOGUANINE non-polymer C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H13 O6 P 200.127 PENTANE-3,4-DIOL-5-PHOSPHATE OPEN FORM OF 1'-2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat.Struct.Biol. NSBIEW 2024 1072-8368 10 204 211 10.1038/nsb902 12592398 Product-Assisted Catalysis in Base Excision DNA Repair 2003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2001-12-15 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 0.950 1.0 A1 CHESS 0.950 SYNCHROTRON CHESS BEAMLINE A1 4635.010 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3' 1 syn polymer 4398.854 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3' 1 syn polymer 36394.176 8-OXOGUANINE DNA GLYCOSYLASE 3.2.2.- CORE FRAGMENT (RESIDUES 12-327) 1 man polymer 40.078 CALCIUM ION 1 syn non-polymer 166.141 8-AMINOGUANINE 1 syn non-polymer 18.015 water 145 nat water no no (DG)(DG)(DT)(DA)(DG)(DA)(DC)(DC)(DT)(DG)(DG)(DA)(DC)(DG)(DC) GGTAGACCTGGACGC D polydeoxyribonucleotide no yes (DG)(DC)(DG)(DT)(DC)(DC)(DA)(PED)(DG)(DT)(DC)(DT)(DA)(DC)(DC) GCGTCCAXGTCTACC E polydeoxyribonucleotide no no AMADIGSEGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKS QASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLC QAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCIL PGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL RQSR AMADIGSEGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKS QASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLC QAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCIL PGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL RQSR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample ogg1 9606 Homo sapiens 562 Escherichia coli 2.82 56.35 VAPOR DIFFUSION, HANGING DROP 6.3 sodium cacodylate, calcium acetate, PEG 8000, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 sodium cacodylate 1 calcium acetate 1 PEG 8000 1 -3.270 1 D 1 E 30 6.571 D_DG1:DC30_E 1 -7.313 -1.583 0.745 -0.044 -12.507 1 19 D 2 E 29 -10.275 D_DG2:DC29_E 2 2.798 -0.088 -0.182 -0.153 -7.867 1 20 D 3 E 28 -2.507 D_DT3:DA28_E 3 -7.797 -0.483 0.681 -0.013 -11.921 1 20 D 4 E 27 9.328 D_DA4:DT27_E 4 -11.323 -0.225 -0.167 -0.277 2.801 D 5 E 26 -13.449 D_DG5:DC26_E 5 -8.506 -0.226 -0.174 0.052 6.435 1 20 D 6 E 25 -3.716 D_DA6:DT25_E 6 -9.722 0.117 0.370 0.099 14.465 1 19 D 7 E 24 -0.503 D_DC7:DG24_E 7 2.032 0.423 -0.295 -0.391 -12.227 1 20 D 9 E 22 0.414 D_DT9:DA22_E 8 -14.403 -0.486 0.253 -0.179 5.658 1 19 D 10 E 21 0.438 D_DG10:DC21_E 9 -3.282 -0.575 0.266 -0.179 5.869 1 19 D 11 E 20 -0.404 D_DG11:DC20_E 10 -12.884 0.183 0.073 -0.081 -8.379 1 20 D 12 E 19 -7.498 D_DA12:DT19_E 11 -15.319 0.995 -0.132 -0.369 -2.407 1 19 D 13 E 18 -8.720 D_DC13:DG18_E 12 -9.118 -0.109 0.414 0.143 -1.157 D 14 E 17 -1.752 D_DG14:DC17_E 13 -11.216 1.646 -0.237 0.473 15.709 1 D 15 E 16 4.306 D_DC15:DG16_E 14 0.966 1.620 0.120 0.246 4.134 46.051 D D 1 2 -6.979 E E 30 29 4.135 -5.448 -1.024 -0.221 DD_DG1DG2:DC29DC30_EE 1 -0.029 0.037 45.745 0.311 1.306 3.397 30.093 D D 2 3 -1.648 E E 29 28 3.344 -0.848 -0.548 -0.645 DD_DG2DT3:DA28DC29_EE 2 -7.074 13.749 29.257 -1.061 -0.457 3.474 43.827 D D 3 4 -0.501 E E 28 27 3.500 -0.373 -0.066 0.204 DD_DT3DA4:DT27DA28_EE 3 4.567 -6.128 43.599 0.311 0.553 3.187 29.843 D D 4 5 7.368 E E 27 26 3.119 3.784 -0.786 0.521 DD_DA4DG5:DC26DT27_EE 4 -1.116 2.173 29.587 0.250 1.301 3.026 38.281 D D 5 6 1.904 E E 26 25 3.048 1.247 -0.048 -0.337 DD_DG5DA6:DT25DC26_EE 5 -3.878 5.923 38.072 -0.659 -0.379 3.200 30.422 D D 6 7 2.048 E E 25 24 3.104 1.070 0.961 -0.249 DD_DA6DC7:DG24DT25_EE 6 4.510 -8.626 30.075 -0.683 -0.957 3.054 31.986 D D 9 10 9.753 E E 22 21 2.983 5.347 0.395 0.869 DD_DT9DG10:DC21DA22_EE 7 -2.086 3.806 31.480 0.678 -1.068 3.423 40.982 D D 10 11 7.881 E E 21 20 3.357 5.501 -1.112 0.407 DD_DG10DG11:DC20DC21_EE 8 -1.698 2.433 40.592 -0.043 1.395 3.565 36.707 D D 11 12 7.609 E E 20 19 3.669 4.778 -0.317 -0.664 DD_DG11DA12:DT19DC20_EE 9 -1.423 2.265 36.378 -1.780 0.288 2.930 28.080 D D 12 13 -0.082 E E 19 18 2.988 -0.040 0.255 -1.037 DD_DA12DC13:DG18DT19_EE 10 -3.767 7.786 27.832 -2.129 -1.331 3.488 45.958 D D 13 14 -0.231 E E 18 17 3.470 -0.180 0.417 0.302 DD_DC13DG14:DC17DG18_EE 11 8.537 -10.992 45.200 0.403 0.257 2.808 36.667 D D 14 15 5.144 E E 17 16 2.921 3.229 1.406 0.202 DD_DG14DC15:DG16DC17_EE 12 -2.991 4.765 36.411 -0.067 -2.595 repository Initial release Version format compliance Version format compliance 1 0 2003-02-25 1 1 2008-04-28 1 2 2011-07-13 1ebm is the Crystal Structure Of The Human 8-Oxoguanine Glycosylase (Hogg1) Bound To A Substrate Oligonucleotide 1fn7 is the Coupling Of Damage Recognition and Catalysis By A Human Base-Excision DNA Repair Protein 1hu0 is the CRYSTAL STRUCTURE OF AN HOGG1-DNA BOROHYDRIDE TRAPPED INTERMEDIATE COMPLEX 1lww is BOROHYDRIDE-TRAPPED HOGG1 INTERMEDIATE STRUCTURE CO-CRYSTALLIZED WITH 8-BROMOGUANINE 1LWY IS Borohydride-Trapped hOgg1 Intermediate without 8-oxoguanine RCSB Y RCSB 2002-06-03 REL REL CA CALCIUM ION ANG 8-AMINOGUANINE HOH water CA 1 4 CA CA 153 E AMG 150 5 ANG ANG 328 A HOH 103 6 HOH HOH 103 D HOH 117 6 HOH HOH 117 D HOH 136 6 HOH HOH 136 D HOH 137 6 HOH HOH 137 D HOH 144 6 HOH HOH 144 D HOH 150 6 HOH HOH 150 D HOH 151 6 HOH HOH 151 D HOH 152 6 HOH HOH 152 D HOH 6 6 HOH HOH 6 E HOH 47 6 HOH HOH 47 E HOH 60 6 HOH HOH 60 E HOH 74 6 HOH HOH 74 E HOH 76 6 HOH HOH 76 E HOH 107 6 HOH HOH 107 E HOH 1 6 HOH HOH 329 A HOH 2 6 HOH HOH 330 A HOH 3 6 HOH HOH 331 A HOH 4 6 HOH HOH 332 A HOH 5 6 HOH HOH 333 A HOH 7 6 HOH HOH 334 A HOH 8 6 HOH HOH 335 A HOH 9 6 HOH HOH 336 A HOH 10 6 HOH HOH 337 A HOH 11 6 HOH HOH 338 A HOH 12 6 HOH HOH 339 A HOH 13 6 HOH HOH 340 A HOH 14 6 HOH HOH 341 A HOH 15 6 HOH HOH 342 A HOH 16 6 HOH HOH 343 A HOH 17 6 HOH HOH 344 A HOH 18 6 HOH HOH 345 A HOH 19 6 HOH HOH 346 A HOH 20 6 HOH HOH 347 A HOH 21 6 HOH HOH 348 A HOH 22 6 HOH HOH 349 A HOH 23 6 HOH HOH 350 A HOH 24 6 HOH HOH 351 A HOH 25 6 HOH HOH 352 A HOH 26 6 HOH HOH 353 A HOH 27 6 HOH HOH 354 A HOH 28 6 HOH HOH 355 A HOH 29 6 HOH HOH 356 A HOH 30 6 HOH HOH 357 A HOH 31 6 HOH HOH 358 A HOH 32 6 HOH HOH 359 A HOH 33 6 HOH HOH 360 A HOH 34 6 HOH HOH 361 A HOH 35 6 HOH HOH 362 A HOH 36 6 HOH HOH 363 A HOH 37 6 HOH HOH 364 A HOH 38 6 HOH HOH 365 A HOH 39 6 HOH HOH 366 A HOH 40 6 HOH HOH 367 A HOH 41 6 HOH HOH 368 A HOH 42 6 HOH HOH 369 A HOH 43 6 HOH HOH 370 A HOH 44 6 HOH HOH 371 A HOH 45 6 HOH HOH 372 A HOH 46 6 HOH HOH 373 A HOH 48 6 HOH HOH 374 A HOH 49 6 HOH HOH 375 A HOH 50 6 HOH HOH 376 A HOH 51 6 HOH HOH 377 A HOH 52 6 HOH HOH 378 A HOH 53 6 HOH HOH 379 A HOH 54 6 HOH HOH 380 A HOH 55 6 HOH HOH 381 A HOH 56 6 HOH HOH 382 A HOH 57 6 HOH HOH 383 A HOH 58 6 HOH HOH 384 A HOH 59 6 HOH HOH 385 A HOH 61 6 HOH HOH 386 A HOH 62 6 HOH HOH 387 A HOH 63 6 HOH HOH 388 A HOH 64 6 HOH HOH 389 A HOH 65 6 HOH HOH 390 A HOH 66 6 HOH HOH 391 A HOH 67 6 HOH HOH 392 A HOH 68 6 HOH HOH 393 A HOH 69 6 HOH HOH 394 A HOH 70 6 HOH HOH 395 A HOH 71 6 HOH HOH 396 A HOH 72 6 HOH HOH 397 A HOH 75 6 HOH HOH 398 A HOH 77 6 HOH HOH 399 A HOH 78 6 HOH HOH 400 A HOH 79 6 HOH HOH 401 A HOH 80 6 HOH HOH 402 A HOH 81 6 HOH HOH 403 A HOH 82 6 HOH HOH 404 A HOH 84 6 HOH HOH 405 A HOH 85 6 HOH HOH 406 A HOH 88 6 HOH HOH 407 A HOH 90 6 HOH HOH 408 A HOH 92 6 HOH HOH 409 A HOH 93 6 HOH HOH 410 A HOH 94 6 HOH HOH 411 A HOH 96 6 HOH HOH 412 A HOH 97 6 HOH HOH 413 A HOH 98 6 HOH HOH 414 A HOH 99 6 HOH HOH 415 A HOH 100 6 HOH HOH 416 A HOH 101 6 HOH HOH 417 A HOH 102 6 HOH HOH 418 A HOH 104 6 HOH HOH 419 A HOH 105 6 HOH HOH 420 A HOH 106 6 HOH HOH 421 A HOH 108 6 HOH HOH 422 A HOH 109 6 HOH HOH 423 A HOH 110 6 HOH HOH 424 A HOH 111 6 HOH HOH 425 A HOH 112 6 HOH HOH 426 A HOH 113 6 HOH HOH 427 A HOH 114 6 HOH HOH 428 A HOH 115 6 HOH HOH 429 A HOH 116 6 HOH HOH 430 A HOH 118 6 HOH HOH 431 A HOH 119 6 HOH HOH 432 A HOH 120 6 HOH HOH 433 A HOH 121 6 HOH HOH 434 A HOH 122 6 HOH HOH 435 A HOH 123 6 HOH HOH 436 A HOH 124 6 HOH HOH 437 A HOH 125 6 HOH HOH 438 A HOH 126 6 HOH HOH 439 A HOH 127 6 HOH HOH 440 A HOH 128 6 HOH HOH 441 A HOH 129 6 HOH HOH 442 A HOH 130 6 HOH HOH 443 A HOH 131 6 HOH HOH 444 A HOH 132 6 HOH HOH 445 A HOH 133 6 HOH HOH 446 A HOH 134 6 HOH HOH 447 A HOH 135 6 HOH HOH 448 A HOH 138 6 HOH HOH 449 A HOH 139 6 HOH HOH 450 A HOH 140 6 HOH HOH 451 A HOH 141 6 HOH HOH 452 A HOH 142 6 HOH HOH 453 A HOH 143 6 HOH HOH 454 A HOH 145 6 HOH HOH 455 A HOH 146 6 HOH HOH 456 A HOH 147 6 HOH HOH 457 A HOH 148 6 HOH HOH 458 A HOH 149 6 HOH HOH 459 A GUA 1 n 1 DG 1 D GUA 2 n 2 DG 2 D THY 3 n 3 DT 3 D ADE 4 n 4 DA 4 D GUA 5 n 5 DG 5 D ADE 6 n 6 DA 6 D CYT 7 n 7 DC 7 D CYT 8 n 8 DC 8 D THY 9 n 9 DT 9 D GUA 10 n 10 DG 10 D GUA 11 n 11 DG 11 D ADE 12 n 12 DA 12 D CYT 13 n 13 DC 13 D GUA 14 n 14 DG 14 D CYT 15 n 15 DC 15 D GUA 16 n 1 DG 16 E CYT 17 n 2 DC 17 E GUA 18 n 3 DG 18 E THY 19 n 4 DT 19 E CYT 20 n 5 DC 20 E CYT 21 n 6 DC 21 E ADE 22 n 7 DA 22 E PED 23 n 8 PED 23 E GUA 24 n 9 DG 24 E THY 25 n 10 DT 25 E CYT 26 n 11 DC 26 E THY 27 n 12 DT 27 E ADE 28 n 13 DA 28 E CYT 29 n 14 DC 29 E CYT 30 n 15 DC 30 E n 1 4 A n 2 5 A n 3 6 A n 4 7 A n 5 8 A GLY 9 n 6 GLY 9 A SER 10 n 7 SER 10 A GLU 11 n 8 GLU 11 A GLY 12 n 9 GLY 12 A HIS 13 n 10 HIS 13 A ARG 14 n 11 ARG 14 A THR 15 n 12 THR 15 A LEU 16 n 13 LEU 16 A ALA 17 n 14 ALA 17 A SER 18 n 15 SER 18 A THR 19 n 16 THR 19 A PRO 20 n 17 PRO 20 A ALA 21 n 18 ALA 21 A LEU 22 n 19 LEU 22 A TRP 23 n 20 TRP 23 A ALA 24 n 21 ALA 24 A SER 25 n 22 SER 25 A ILE 26 n 23 ILE 26 A PRO 27 n 24 PRO 27 A CYS 28 n 25 CYS 28 A PRO 29 n 26 PRO 29 A ARG 30 n 27 ARG 30 A SER 31 n 28 SER 31 A GLU 32 n 29 GLU 32 A LEU 33 n 30 LEU 33 A ARG 34 n 31 ARG 34 A LEU 35 n 32 LEU 35 A ASP 36 n 33 ASP 36 A LEU 37 n 34 LEU 37 A VAL 38 n 35 VAL 38 A LEU 39 n 36 LEU 39 A PRO 40 n 37 PRO 40 A SER 41 n 38 SER 41 A GLY 42 n 39 GLY 42 A GLN 43 n 40 GLN 43 A SER 44 n 41 SER 44 A PHE 45 n 42 PHE 45 A ARG 46 n 43 ARG 46 A TRP 47 n 44 TRP 47 A ARG 48 n 45 ARG 48 A GLU 49 n 46 GLU 49 A GLN 50 n 47 GLN 50 A SER 51 n 48 SER 51 A PRO 52 n 49 PRO 52 A ALA 53 n 50 ALA 53 A HIS 54 n 51 HIS 54 A TRP 55 n 52 TRP 55 A SER 56 n 53 SER 56 A GLY 57 n 54 GLY 57 A VAL 58 n 55 VAL 58 A LEU 59 n 56 LEU 59 A ALA 60 n 57 ALA 60 A ASP 61 n 58 ASP 61 A GLN 62 n 59 GLN 62 A VAL 63 n 60 VAL 63 A TRP 64 n 61 TRP 64 A THR 65 n 62 THR 65 A LEU 66 n 63 LEU 66 A THR 67 n 64 THR 67 A GLN 68 n 65 GLN 68 A THR 69 n 66 THR 69 A GLU 70 n 67 GLU 70 A GLU 71 n 68 GLU 71 A GLN 72 n 69 GLN 72 A LEU 73 n 70 LEU 73 A HIS 74 n 71 HIS 74 A CYS 75 n 72 CYS 75 A THR 76 n 73 THR 76 A VAL 77 n 74 VAL 77 A TYR 78 n 75 TYR 78 A ARG 79 n 76 ARG 79 A n 77 80 A n 78 81 A n 79 82 A SER 83 n 80 SER 83 A GLN 84 n 81 GLN 84 A ALA 85 n 82 ALA 85 A SER 86 n 83 SER 86 A ARG 87 n 84 ARG 87 A PRO 88 n 85 PRO 88 A THR 89 n 86 THR 89 A PRO 90 n 87 PRO 90 A ASP 91 n 88 ASP 91 A GLU 92 n 89 GLU 92 A LEU 93 n 90 LEU 93 A GLU 94 n 91 GLU 94 A ALA 95 n 92 ALA 95 A VAL 96 n 93 VAL 96 A ARG 97 n 94 ARG 97 A LYS 98 n 95 LYS 98 A TYR 99 n 96 TYR 99 A PHE 100 n 97 PHE 100 A GLN 101 n 98 GLN 101 A LEU 102 n 99 LEU 102 A ASP 103 n 100 ASP 103 A VAL 104 n 101 VAL 104 A THR 105 n 102 THR 105 A LEU 106 n 103 LEU 106 A ALA 107 n 104 ALA 107 A GLN 108 n 105 GLN 108 A LEU 109 n 106 LEU 109 A TYR 110 n 107 TYR 110 A HIS 111 n 108 HIS 111 A HIS 112 n 109 HIS 112 A TRP 113 n 110 TRP 113 A GLY 114 n 111 GLY 114 A SER 115 n 112 SER 115 A VAL 116 n 113 VAL 116 A ASP 117 n 114 ASP 117 A SER 118 n 115 SER 118 A HIS 119 n 116 HIS 119 A PHE 120 n 117 PHE 120 A GLN 121 n 118 GLN 121 A GLU 122 n 119 GLU 122 A VAL 123 n 120 VAL 123 A ALA 124 n 121 ALA 124 A GLN 125 n 122 GLN 125 A LYS 126 n 123 LYS 126 A PHE 127 n 124 PHE 127 A GLN 128 n 125 GLN 128 A GLY 129 n 126 GLY 129 A VAL 130 n 127 VAL 130 A ARG 131 n 128 ARG 131 A LEU 132 n 129 LEU 132 A LEU 133 n 130 LEU 133 A ALA 134 n 131 ARG 134 A GLN 135 n 132 GLN 135 A ASP 136 n 133 ASP 136 A PRO 137 n 134 PRO 137 A ILE 138 n 135 ILE 138 A GLU 139 n 136 GLU 139 A CYS 140 n 137 CYS 140 A LEU 141 n 138 LEU 141 A PHE 142 n 139 PHE 142 A SER 143 n 140 SER 143 A PHE 144 n 141 PHE 144 A ILE 145 n 142 ILE 145 A CYS 146 n 143 CYS 146 A SER 147 n 144 SER 147 A SER 148 n 145 SER 148 A ASN 149 n 146 ASN 149 A ASN 150 n 147 ASN 150 A ASN 151 n 148 ASN 151 A ILE 152 n 149 ILE 152 A ALA 153 n 150 ALA 153 A ARG 154 n 151 ARG 154 A ILE 155 n 152 ILE 155 A THR 156 n 153 THR 156 A GLY 157 n 154 GLY 157 A MET 158 n 155 MET 158 A VAL 159 n 156 VAL 159 A GLU 160 n 157 GLU 160 A ARG 161 n 158 ARG 161 A LEU 162 n 159 LEU 162 A CYS 163 n 160 CYS 163 A GLN 164 n 161 GLN 164 A ALA 165 n 162 ALA 165 A PHE 166 n 163 PHE 166 A GLY 167 n 164 GLY 167 A PRO 168 n 165 PRO 168 A ARG 169 n 166 ARG 169 A LEU 170 n 167 LEU 170 A ILE 171 n 168 ILE 171 A GLN 172 n 169 GLN 172 A LEU 173 n 170 LEU 173 A ASP 174 n 171 ASP 174 A ASP 175 n 172 ASP 175 A VAL 176 n 173 VAL 176 A THR 177 n 174 THR 177 A TYR 178 n 175 TYR 178 A HIS 179 n 176 HIS 179 A GLY 180 n 177 GLY 180 A PHE 181 n 178 PHE 181 A PRO 182 n 179 PRO 182 A SER 183 n 180 SER 183 A LEU 184 n 181 LEU 184 A GLN 185 n 182 GLN 185 A ALA 186 n 183 ALA 186 A LEU 187 n 184 LEU 187 A ALA 188 n 185 ALA 188 A GLY 189 n 186 GLY 189 A PRO 190 n 187 PRO 190 A GLU 191 n 188 GLU 191 A VAL 192 n 189 VAL 192 A GLU 193 n 190 GLU 193 A ALA 194 n 191 ALA 194 A HIS 195 n 192 HIS 195 A LEU 196 n 193 LEU 196 A ARG 197 n 194 ARG 197 A LYS 198 n 195 LYS 198 A LEU 199 n 196 LEU 199 A GLY 200 n 197 GLY 200 A LEU 201 n 198 LEU 201 A GLY 202 n 199 GLY 202 A TYR 203 n 200 TYR 203 A ARG 204 n 201 ARG 204 A ALA 205 n 202 ALA 205 A ARG 206 n 203 ARG 206 A TYR 207 n 204 TYR 207 A VAL 208 n 205 VAL 208 A SER 209 n 206 SER 209 A ALA 210 n 207 ALA 210 A SER 211 n 208 SER 211 A ALA 212 n 209 ALA 212 A ARG 213 n 210 ARG 213 A ALA 214 n 211 ALA 214 A ILE 215 n 212 ILE 215 A LEU 216 n 213 LEU 216 A GLU 217 n 214 GLU 217 A GLU 218 n 215 GLU 218 A GLN 219 n 216 GLN 219 A GLY 220 n 217 GLY 220 A GLY 221 n 218 GLY 221 A LEU 222 n 219 LEU 222 A ALA 223 n 220 ALA 223 A TRP 224 n 221 TRP 224 A LEU 225 n 222 LEU 225 A GLN 226 n 223 GLN 226 A GLN 227 n 224 GLN 227 A LEU 228 n 225 LEU 228 A ARG 229 n 226 ARG 229 A GLU 230 n 227 GLU 230 A SER 231 n 228 SER 231 A SER 232 n 229 SER 232 A TYR 233 n 230 TYR 233 A GLU 234 n 231 GLU 234 A GLU 235 n 232 GLU 235 A ALA 236 n 233 ALA 236 A HIS 237 n 234 HIS 237 A LYS 238 n 235 LYS 238 A ALA 239 n 236 ALA 239 A LEU 240 n 237 LEU 240 A CYS 241 n 238 CYS 241 A ILE 242 n 239 ILE 242 A LEU 243 n 240 LEU 243 A PRO 244 n 241 PRO 244 A GLY 245 n 242 GLY 245 A VAL 246 n 243 VAL 246 A GLY 247 n 244 GLY 247 A THR 248 n 245 THR 248 A LYS 249 n 246 LYS 249 A VAL 250 n 247 VAL 250 A ALA 251 n 248 ALA 251 A ASP 252 n 249 ASP 252 A CYS 253 n 250 CYS 253 A ILE 254 n 251 ILE 254 A CYS 255 n 252 CYS 255 A LEU 256 n 253 LEU 256 A MET 257 n 254 MET 257 A ALA 258 n 255 ALA 258 A LEU 259 n 256 LEU 259 A ASP 260 n 257 ASP 260 A LYS 261 n 258 LYS 261 A PRO 262 n 259 PRO 262 A GLN 263 n 260 GLN 263 A ALA 264 n 261 ALA 264 A VAL 265 n 262 VAL 265 A PRO 266 n 263 PRO 266 A VAL 267 n 264 VAL 267 A ASP 268 n 265 ASP 268 A VAL 269 n 266 VAL 269 A HIS 270 n 267 HIS 270 A MET 271 n 268 MET 271 A TRP 272 n 269 TRP 272 A HIS 273 n 270 HIS 273 A ILE 274 n 271 ILE 274 A ALA 275 n 272 ALA 275 A GLN 276 n 273 GLN 276 A ARG 277 n 274 ARG 277 A ASP 278 n 275 ASP 278 A TYR 279 n 276 TYR 279 A SER 280 n 277 SER 280 A TRP 281 n 278 TRP 281 A HIS 282 n 279 HIS 282 A PRO 283 n 280 PRO 283 A THR 284 n 281 THR 284 A THR 285 n 282 THR 285 A SER 286 n 283 SER 286 A GLN 287 n 284 GLN 287 A ALA 288 n 285 ALA 288 A LYS 289 n 286 LYS 289 A GLY 290 n 287 GLY 290 A PRO 291 n 288 PRO 291 A SER 292 n 289 SER 292 A PRO 293 n 290 PRO 293 A GLN 294 n 291 GLN 294 A THR 295 n 292 THR 295 A ASN 296 n 293 ASN 296 A LYS 297 n 294 LYS 297 A GLU 298 n 295 GLU 298 A LEU 299 n 296 LEU 299 A GLY 300 n 297 GLY 300 A ASN 301 n 298 ASN 301 A PHE 302 n 299 PHE 302 A PHE 303 n 300 PHE 303 A ARG 304 n 301 ARG 304 A SER 305 n 302 SER 305 A LEU 306 n 303 LEU 306 A TRP 307 n 304 TRP 307 A GLY 308 n 305 GLY 308 A PRO 309 n 306 PRO 309 A TYR 310 n 307 TYR 310 A ALA 311 n 308 ALA 311 A GLY 312 n 309 GLY 312 A TRP 313 n 310 TRP 313 A ALA 314 n 311 ALA 314 A GLN 315 n 312 GLN 315 A ALA 316 n 313 ALA 316 A VAL 317 n 314 VAL 317 A LEU 318 n 315 LEU 318 A PHE 319 n 316 PHE 319 A SER 320 n 317 SER 320 A ALA 321 n 318 ALA 321 A ASP 322 n 319 ASP 322 A LEU 323 n 320 LEU 323 A ARG 324 n 321 ARG 324 A GLN 325 n 322 GLN 325 A n 323 326 A n 324 327 A author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ALA 24 C N ALA 21 A O CYS 75 C O CYS 72 A O HIS 74 C O HIS 71 A N THR 67 C N THR 64 A O LEU 66 C O LEU 63 A N TRP 55 C N TRP 52 A O SER 56 C O SER 53 A N ARG 48 C N ARG 45 A N LEU 173 C N LEU 170 A O VAL 176 C O VAL 173 1 A CG ARG 134 C CG ARG 131 1 Y 1 A CD ARG 134 C CD ARG 131 1 Y 1 A NE ARG 134 C NE ARG 131 1 Y 1 A CZ ARG 134 C CZ ARG 131 1 Y 1 A NH1 ARG 134 C NH1 ARG 131 1 Y 1 A NH2 ARG 134 C NH2 ARG 131 1 Y 1 A ALA 4 C ALA 1 1 Y 1 A MET 5 C MET 2 1 Y 1 A ALA 6 C ALA 3 1 Y 1 A ASP 7 C ASP 4 1 Y 1 A ILE 8 C ILE 5 1 Y 1 A GLY 80 C GLY 77 1 Y 1 A ASP 81 C ASP 78 1 Y 1 A LYS 82 C LYS 79 1 Y 1 A SER 326 C SER 323 1 Y 1 A ARG 327 C ARG 324 1 Y 1 D D O3' O3' DC DC 15 15 1.53 1_555 11_655 1 A LEU 22 -103.22 47.41 1 A CYS 28 -165.98 105.30 1 A GLN 43 -96.19 -63.10 1 A ALA 53 59.29 19.18 1 A THR 69 -102.36 -165.64 1 A SER 86 -128.07 -164.55 1 A LEU 170 -98.64 -96.15 1 A ASP 174 57.70 -127.31 1 A GLU 218 -159.19 -32.78 1 A LYS 261 -112.87 78.91 1 A THR 284 -108.21 -61.97 1 A THR 285 -69.28 0.58 1 A ARG 324 -69.53 52.72 0.269 0.228 2.3 50 2273 24338 22742 Random 1 THROUGHOUT 2 FOURIER SYNTHESIS 1EBM Engh & Huber 0.35 0.3 5.0 0.30 0.24 2.3 50 145 3241 13 598 2485 0.006 1.21 21.2 0.304 0.262 2.38 210 79 2.0 50 1LWV 35481 34468 -3 0.096 1 18.1 5.2 96.7 0.56 2.0 2.07 2.8 3274 3.9 92.3 data reduction DENZO data scaling SCALEPACK refinement CNS phasing CNS 8-OXOGUANINE DNA GLYCOSYLASE (E.C.3.2.2.-)/DNA Complex Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-aminoguanine 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 6 N N 6 N N A THR 19 C THR 16 HELX_P A TRP 23 C TRP 20 5 1 5 A ARG 34 C ARG 31 HELX_P A LEU 39 C LEU 36 1 2 6 A THR 89 C THR 86 HELX_P A PHE 100 C PHE 97 1 3 12 A THR 105 C THR 102 HELX_P A ASP 117 C ASP 114 1 4 13 A ASP 117 C ASP 114 HELX_P A GLN 125 C GLN 122 1 5 9 A ASP 136 C ASP 133 HELX_P A CYS 146 C CYS 143 1 6 11 A ASN 151 C ASN 148 HELX_P A GLY 167 C GLY 164 1 7 17 A SER 183 C SER 180 HELX_P A GLY 189 C GLY 186 1 8 7 A GLU 191 C GLU 188 HELX_P A LEU 199 C LEU 196 1 9 9 A TYR 203 C TYR 200 HELX_P A GLU 218 C GLU 215 1 10 16 A GLY 221 C GLY 218 HELX_P A ARG 229 C ARG 226 1 11 9 A SER 232 C SER 229 HELX_P A CYS 241 C CYS 238 1 12 10 A GLY 247 C GLY 244 HELX_P A LEU 259 C LEU 256 1 13 13 A ASP 268 C ASP 265 HELX_P A SER 280 C SER 277 1 14 13 A SER 292 C SER 289 HELX_P A GLY 308 C GLY 305 1 15 17 A TYR 310 C TYR 307 HELX_P A ARG 324 C ARG 321 1 16 15 covale 1.452 E PED 23 B C1' PED 8 1_555 A LYS 249 C NZ LYS 246 1_555 covale 1.594 E DA 22 B O3' DA 7 1_555 E PED 23 B P PED 8 1_555 covale 1.607 E PED 23 B O3' PED 8 1_555 E DG 24 B P DG 9 1_555 metalc 2.778 E CA 153 D CA CA 1_555 E HOH 6 G O HOH 1_555 hydrog DG-DC PAIR D DG 1 A N1 DG 1 1_555 E DC 30 B O2 DC 15 1_555 hydrog WATSON-CRICK D DG 2 A N1 DG 2 1_555 E DC 29 B N3 DC 14 1_555 hydrog WATSON-CRICK D DG 2 A N2 DG 2 1_555 E DC 29 B O2 DC 14 1_555 hydrog WATSON-CRICK D DG 2 A O6 DG 2 1_555 E DC 29 B N4 DC 14 1_555 hydrog WATSON-CRICK D DT 3 A N3 DT 3 1_555 E DA 28 B N1 DA 13 1_555 hydrog WATSON-CRICK D DT 3 A O4 DT 3 1_555 E DA 28 B N6 DA 13 1_555 hydrog WATSON-CRICK D DA 4 A N1 DA 4 1_555 E DT 27 B N3 DT 12 1_555 hydrog WATSON-CRICK D DA 4 A N6 DA 4 1_555 E DT 27 B O4 DT 12 1_555 hydrog DG-DC PAIR D DG 5 A N1 DG 5 1_555 E DC 26 B N3 DC 11 1_555 hydrog WATSON-CRICK D DA 6 A N1 DA 6 1_555 E DT 25 B N3 DT 10 1_555 hydrog WATSON-CRICK D DA 6 A N6 DA 6 1_555 E DT 25 B O4 DT 10 1_555 hydrog WATSON-CRICK D DC 7 A N3 DC 7 1_555 E DG 24 B N1 DG 9 1_555 hydrog WATSON-CRICK D DC 7 A N4 DC 7 1_555 E DG 24 B O6 DG 9 1_555 hydrog WATSON-CRICK D DC 7 A O2 DC 7 1_555 E DG 24 B N2 DG 9 1_555 hydrog WATSON-CRICK D DT 9 A N3 DT 9 1_555 E DA 22 B N1 DA 7 1_555 hydrog WATSON-CRICK D DT 9 A O4 DT 9 1_555 E DA 22 B N6 DA 7 1_555 hydrog WATSON-CRICK D DG 10 A N1 DG 10 1_555 E DC 21 B N3 DC 6 1_555 hydrog WATSON-CRICK D DG 10 A N2 DG 10 1_555 E DC 21 B O2 DC 6 1_555 hydrog WATSON-CRICK D DG 10 A O6 DG 10 1_555 E DC 21 B N4 DC 6 1_555 hydrog WATSON-CRICK D DG 11 A N1 DG 11 1_555 E DC 20 B N3 DC 5 1_555 hydrog WATSON-CRICK D DG 11 A N2 DG 11 1_555 E DC 20 B O2 DC 5 1_555 hydrog WATSON-CRICK D DG 11 A O6 DG 11 1_555 E DC 20 B N4 DC 5 1_555 hydrog WATSON-CRICK D DA 12 A N1 DA 12 1_555 E DT 19 B N3 DT 4 1_555 hydrog WATSON-CRICK D DA 12 A N6 DA 12 1_555 E DT 19 B O4 DT 4 1_555 hydrog WATSON-CRICK D DC 13 A N3 DC 13 1_555 E DG 18 B N1 DG 3 1_555 hydrog WATSON-CRICK D DC 13 A N4 DC 13 1_555 E DG 18 B O6 DG 3 1_555 hydrog WATSON-CRICK D DC 13 A O2 DC 13 1_555 E DG 18 B N2 DG 3 1_555 hydrog DG-DC PAIR D DG 14 A N2 DG 14 1_555 E DC 17 B N3 DC 2 1_555 hydrog DC-DG PAIR D DC 15 A O2 DC 15 1_555 E DG 16 B N1 DG 1 1_555 HYDROLASE/DNA DNA REPAIR, DNA GLYCOSYLASE, PROTEIN/DNA, BOROHYDRIDE, COVALENT TRAPPING, PRODUCT-ASSISTED CATALYSIS, REACTION INTERMEDIATE, HYDROLASE-DNA COMPLEX OGG1_HUMAN UNP 3 12 O15527 GHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPD ELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLI QLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVA DCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLRQSR 1LWV PDB 1 1LWV 1LWV PDB 2 1LWV 12 327 1LWV 12 327 O15527 A 1 9 324 1 15 1LWV 1 15 1LWV D 2 1 15 16 30 1LWV 16 30 1LWV E 3 1 15 1 CLONING ARTIFACT ALA 4 1LWV A O15527 UNP 1 1 CLONING ARTIFACT MET 5 1LWV A O15527 UNP 2 1 CLONING ARTIFACT ALA 6 1LWV A O15527 UNP 3 1 CLONING ARTIFACT ASP 7 1LWV A O15527 UNP 4 1 CLONING ARTIFACT ILE 8 1LWV A O15527 UNP 5 1 CLONING ARTIFACT GLY 9 1LWV A O15527 UNP 6 1 CLONING ARTIFACT SER 10 1LWV A O15527 UNP 7 1 CLONING ARTIFACT GLU 11 1LWV A O15527 UNP 8 5 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ALA 24 C ALA 21 A PRO 27 C PRO 24 A GLN 72 C GLN 69 A TYR 78 C TYR 75 A VAL 63 C VAL 60 A GLN 68 C GLN 65 A HIS 54 C HIS 51 A VAL 58 C VAL 55 A ARG 48 C ARG 45 A SER 51 C SER 48 A ARG 169 C ARG 166 A LEU 173 C LEU 170 A VAL 176 C VAL 173 A HIS 179 C HIS 176 BINDING SITE FOR RESIDUE CA E 153 Software 2 BINDING SITE FOR RESIDUE ANG A 328 Software 12 E HOH 6 G HOH 2 1_555 E DA 22 B DA 7 2 1_555 A GLY 42 C GLY 39 12 1_555 A PHE 45 C PHE 42 12 1_555 A PHE 144 C PHE 141 12 1_555 A LYS 249 C LYS 246 12 1_555 A MET 257 C MET 254 12 1_555 A PRO 266 C PRO 263 12 1_555 A ASP 268 C ASP 265 12 1_555 A MET 271 C MET 268 12 1_555 A GLN 315 C GLN 312 12 1_555 A PHE 319 C PHE 316 12 1_555 A HOH 435 H HOH 12 1_555 E PED 23 B PED 8 12 1_555 179 P 65 2 2