0.010849 0.006264 0.000000 0.000000 0.012527 0.000000 0.000000 0.000000 0.004719 0.00000 0.00000 0.00000 Fromme, J.C. Bruner, S.D. Yang, W. Karplus, M. Verdine, G.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 92.174 92.174 211.887 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H4 Br N5 O 230.022 8-BROMOGUANINE non-polymer Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H13 O6 P 200.127 PENTANE-3,4-DIOL-5-PHOSPHATE OPEN FORM OF 1'-2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat.Struct.Biol. NSBIEW 2024 1072-8368 10 204 211 10.1038/nsb902 12592398 Product-Assisted Catalysis in Base Excision DNA Repair 2003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2001-12-15 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 0.95 1.0 A1 CHESS 0.95 SYNCHROTRON CHESS BEAMLINE A1 4635.010 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3' 1 syn polymer 4398.854 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3' 1 syn polymer 36394.176 8-OXOGUANINE DNA GLYCOSYLASE 3.2.2.- CORE FRAGMENT (RESIDUES 12 TO 327) 1 man polymer 40.078 CALCIUM ION 1 syn non-polymer 230.022 8-BROMOGUANINE 1 syn non-polymer 18.015 water 164 nat water no no (DG)(DG)(DT)(DA)(DG)(DA)(DC)(DC)(DT)(DG)(DG)(DA)(DC)(DG)(DC) GGTAGACCTGGACGC D polydeoxyribonucleotide no yes (DG)(DC)(DG)(DT)(DC)(DC)(DA)(PED)(DG)(DT)(DC)(DT)(DA)(DC)(DC) GCGTCCAXGTCTACC E polydeoxyribonucleotide no no AMADIGSEGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKS QASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLC QAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCIL PGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL RQSR AMADIGSEGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKS QASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLC QAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCIL PGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL RQSR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample ogg1 9606 Homo sapiens 562 Escherichia coli 1 2.83 56.61 VAPOR DIFFUSION, HANGING DROP 6.3 sodium cacodylate, calcium acetate, PEG 8000, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 sodium cacodylate 1 calcium acetate 1 PEG 8000 1 -5.560 1 D 1 E 30 25.531 D_DG1:DC30_E 1 -30.584 -1.770 -0.466 -0.414 -15.425 1 19 D 2 E 29 -6.076 D_DG2:DC29_E 2 1.689 0.248 -0.288 -0.157 -20.491 D 3 E 28 -97.908 D_DT3:DA28_E 3 1.453 0.126 0.719 2.025 -10.180 1 20 D 4 E 27 5.150 D_DA4:DT27_E 4 -19.514 -0.445 -0.650 -0.371 1.620 1 19 D 5 E 26 -8.066 D_DG5:DC26_E 5 -11.826 -0.305 -0.231 -0.019 6.066 1 20 D 6 E 25 -5.170 D_DA6:DT25_E 6 -8.270 0.079 0.250 0.257 17.551 1 19 D 7 E 24 1.496 D_DC7:DG24_E 7 -6.211 0.434 -0.147 -0.235 -9.980 1 20 D 9 E 22 2.348 D_DT9:DA22_E 8 -13.726 -0.131 0.082 -0.084 6.082 1 19 D 10 E 21 -0.259 D_DG10:DC21_E 9 -3.918 -0.660 0.271 -0.394 0.279 1 19 D 11 E 20 -3.388 D_DG11:DC20_E 10 -13.679 0.004 -0.125 -0.196 -5.398 1 20 D 12 E 19 -0.621 D_DA12:DT19_E 11 -15.005 0.399 -0.204 -0.294 -2.802 1 19 D 13 E 18 -8.011 D_DC13:DG18_E 12 -11.396 0.089 -0.076 0.128 12.467 1 19 D 14 E 17 4.469 D_DG14:DC17_E 13 -2.524 0.841 0.577 0.130 4.053 48.316 D D 1 2 8.316 E E 30 29 3.881 6.724 -1.195 0.263 DD_DG1DG2:DC29DC30_EE 1 -11.986 14.825 46.433 -0.327 0.303 3.065 80.372 D D 2 3 6.737 E E 29 28 3.179 8.683 -0.086 -1.136 DD_DG2DT3:DA28DC29_EE 2 -1.347 1.045 79.971 -1.098 0.033 3.712 -11.571 D D 3 4 54.074 E E 28 27 3.440 -9.041 0.449 2.738 DD_DT3DA4:DT27DA28_EE 3 4.253 25.437 -5.842 4.813 10.882 2.940 31.046 D D 4 5 22.736 E E 27 26 3.101 11.805 -0.215 0.210 DD_DA4DG5:DC26DT27_EE 4 -5.700 10.978 28.204 -1.809 -0.661 3.063 37.526 D D 5 6 6.842 E E 26 25 3.080 4.386 -0.291 -0.102 DD_DG5DA6:DT25DC26_EE 5 -3.525 5.499 37.117 -0.699 0.017 3.205 34.675 D D 6 7 -6.367 E E 25 24 3.107 -3.774 0.937 -0.120 DD_DA6DC7:DG24DT25_EE 6 5.170 -8.722 34.097 0.363 -0.799 3.043 27.796 D D 9 10 12.104 E E 22 21 2.964 5.766 0.245 0.855 DD_DT9DG10:DC21DA22_EE 7 -2.497 5.242 27.090 0.492 -1.069 3.461 42.375 D D 10 11 12.254 E E 21 20 3.482 8.797 -1.063 0.046 DD_DG10DG11:DC20DC21_EE 8 -1.744 2.429 41.458 -0.900 1.279 3.439 36.835 D D 11 12 1.187 E E 20 19 3.444 0.750 -0.067 -0.217 DD_DG11DA12:DT19DC20_EE 9 -0.610 0.966 36.823 -0.450 0.020 3.058 28.752 D D 12 13 3.936 E E 19 18 3.121 1.953 -0.030 -0.839 DD_DA12DC13:DG18DT19_EE 10 -0.311 0.627 28.685 -2.103 -0.006 3.015 42.602 D D 13 14 -1.686 E E 18 17 3.021 -1.225 1.260 0.694 DD_DC13DG14:DC17DG18_EE 11 0.524 -0.721 42.582 1.069 -1.685 repository Initial release Version format compliance Version format compliance 1 0 2003-02-25 1 1 2008-04-28 1 2 2011-07-13 1HU0 IS the CRYSTAL STRUCTURE OF AN HOGG1-DNA BOROHYDRIDE TRAPPED INTERMEDIATE COMPLEX 1LWV IS Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-aminoguanine 1LWY IS Borohydride-Trapped hOgg1 Intermediate without 8-oxoguanine 1EBM is the Crystal Structure Of The Human 8-Oxoguanine Glycosylase (Hogg1) Bound To A Substrate Oligonucleotide 1FN7 IS the Coupling Of Damage Recognition and Catalysis By A Human Base-Excision DNA Repair Protein RCSB Y RCSB 2002-06-03 REL REL CA CALCIUM ION BRG 8-BROMOGUANINE HOH water CA 1 4 CA CA 216 E BRG 150 5 BRG BRG 328 A HOH 61 6 HOH HOH 61 D HOH 141 6 HOH HOH 141 D HOH 147 6 HOH HOH 147 D HOH 158 6 HOH HOH 158 D HOH 159 6 HOH HOH 159 D HOH 163 6 HOH HOH 163 D HOH 179 6 HOH HOH 179 D HOH 191 6 HOH HOH 191 D HOH 6 6 HOH HOH 6 E HOH 47 6 HOH HOH 47 E HOH 60 6 HOH HOH 60 E HOH 74 6 HOH HOH 74 E HOH 138 6 HOH HOH 138 E HOH 177 6 HOH HOH 177 E HOH 208 6 HOH HOH 208 E HOH 209 6 HOH HOH 209 E HOH 1 6 HOH HOH 329 A HOH 2 6 HOH HOH 330 A HOH 3 6 HOH HOH 331 A HOH 4 6 HOH HOH 332 A HOH 5 6 HOH HOH 333 A HOH 7 6 HOH HOH 334 A HOH 8 6 HOH HOH 335 A HOH 9 6 HOH HOH 336 A HOH 10 6 HOH HOH 337 A HOH 11 6 HOH HOH 338 A HOH 12 6 HOH HOH 339 A HOH 13 6 HOH HOH 340 A HOH 14 6 HOH HOH 341 A HOH 15 6 HOH HOH 342 A HOH 16 6 HOH HOH 343 A HOH 17 6 HOH HOH 344 A HOH 18 6 HOH HOH 345 A HOH 19 6 HOH HOH 346 A HOH 20 6 HOH HOH 347 A HOH 21 6 HOH HOH 348 A HOH 22 6 HOH HOH 349 A HOH 23 6 HOH HOH 350 A HOH 24 6 HOH HOH 351 A HOH 25 6 HOH HOH 352 A HOH 26 6 HOH HOH 353 A HOH 27 6 HOH HOH 354 A HOH 28 6 HOH HOH 355 A HOH 29 6 HOH HOH 356 A HOH 30 6 HOH HOH 357 A HOH 31 6 HOH HOH 358 A HOH 32 6 HOH HOH 359 A HOH 33 6 HOH HOH 360 A HOH 34 6 HOH HOH 361 A HOH 35 6 HOH HOH 362 A HOH 36 6 HOH HOH 363 A HOH 37 6 HOH HOH 364 A HOH 38 6 HOH HOH 365 A HOH 39 6 HOH HOH 366 A HOH 40 6 HOH HOH 367 A HOH 41 6 HOH HOH 368 A HOH 42 6 HOH HOH 369 A HOH 43 6 HOH HOH 370 A HOH 44 6 HOH HOH 371 A HOH 45 6 HOH HOH 372 A HOH 46 6 HOH HOH 373 A HOH 48 6 HOH HOH 374 A HOH 49 6 HOH HOH 375 A HOH 51 6 HOH HOH 376 A HOH 52 6 HOH HOH 377 A HOH 53 6 HOH HOH 378 A HOH 55 6 HOH HOH 379 A HOH 56 6 HOH HOH 380 A HOH 62 6 HOH HOH 381 A HOH 65 6 HOH HOH 382 A HOH 66 6 HOH HOH 383 A HOH 69 6 HOH HOH 384 A HOH 70 6 HOH HOH 385 A HOH 71 6 HOH HOH 386 A HOH 72 6 HOH HOH 387 A HOH 75 6 HOH HOH 388 A HOH 76 6 HOH HOH 389 A HOH 77 6 HOH HOH 390 A HOH 78 6 HOH HOH 391 A HOH 79 6 HOH HOH 392 A HOH 80 6 HOH HOH 393 A HOH 81 6 HOH HOH 394 A HOH 82 6 HOH HOH 395 A HOH 85 6 HOH HOH 396 A HOH 88 6 HOH HOH 397 A HOH 90 6 HOH HOH 398 A HOH 96 6 HOH HOH 399 A HOH 97 6 HOH HOH 400 A HOH 98 6 HOH HOH 401 A HOH 99 6 HOH HOH 402 A HOH 100 6 HOH HOH 403 A HOH 101 6 HOH HOH 404 A HOH 102 6 HOH HOH 405 A HOH 103 6 HOH HOH 406 A HOH 105 6 HOH HOH 407 A HOH 106 6 HOH HOH 408 A HOH 107 6 HOH HOH 409 A HOH 108 6 HOH HOH 410 A HOH 109 6 HOH HOH 411 A HOH 110 6 HOH HOH 412 A HOH 111 6 HOH HOH 413 A HOH 112 6 HOH HOH 414 A HOH 113 6 HOH HOH 415 A HOH 114 6 HOH HOH 416 A HOH 116 6 HOH HOH 417 A HOH 117 6 HOH HOH 418 A HOH 118 6 HOH HOH 419 A HOH 120 6 HOH HOH 420 A HOH 121 6 HOH HOH 421 A HOH 122 6 HOH HOH 422 A HOH 123 6 HOH HOH 423 A HOH 124 6 HOH HOH 424 A HOH 125 6 HOH HOH 425 A HOH 126 6 HOH HOH 426 A HOH 128 6 HOH HOH 427 A HOH 129 6 HOH HOH 428 A HOH 130 6 HOH HOH 429 A HOH 131 6 HOH HOH 430 A HOH 134 6 HOH HOH 431 A HOH 135 6 HOH HOH 432 A HOH 136 6 HOH HOH 433 A HOH 137 6 HOH HOH 434 A HOH 139 6 HOH HOH 435 A HOH 140 6 HOH HOH 436 A HOH 142 6 HOH HOH 437 A HOH 143 6 HOH HOH 438 A HOH 144 6 HOH HOH 439 A HOH 146 6 HOH HOH 440 A HOH 149 6 HOH HOH 441 A HOH 150 6 HOH HOH 442 A HOH 151 6 HOH HOH 443 A HOH 152 6 HOH HOH 444 A HOH 153 6 HOH HOH 445 A HOH 154 6 HOH HOH 446 A HOH 156 6 HOH HOH 447 A HOH 157 6 HOH HOH 448 A HOH 162 6 HOH HOH 449 A HOH 168 6 HOH HOH 450 A HOH 169 6 HOH HOH 451 A HOH 172 6 HOH HOH 452 A HOH 174 6 HOH HOH 453 A HOH 175 6 HOH HOH 454 A HOH 176 6 HOH HOH 455 A HOH 178 6 HOH HOH 456 A HOH 181 6 HOH HOH 457 A HOH 182 6 HOH HOH 458 A HOH 184 6 HOH HOH 459 A HOH 185 6 HOH HOH 460 A HOH 186 6 HOH HOH 461 A HOH 187 6 HOH HOH 462 A HOH 188 6 HOH HOH 463 A HOH 189 6 HOH HOH 464 A HOH 190 6 HOH HOH 465 A HOH 192 6 HOH HOH 466 A HOH 195 6 HOH HOH 467 A HOH 198 6 HOH HOH 468 A HOH 200 6 HOH HOH 469 A HOH 202 6 HOH HOH 470 A HOH 203 6 HOH HOH 471 A HOH 205 6 HOH HOH 472 A HOH 207 6 HOH HOH 473 A HOH 211 6 HOH HOH 474 A HOH 212 6 HOH HOH 475 A HOH 215 6 HOH HOH 476 A GUA 1 n 1 DG 1 D GUA 2 n 2 DG 2 D THY 3 n 3 DT 3 D ADE 4 n 4 DA 4 D GUA 5 n 5 DG 5 D ADE 6 n 6 DA 6 D CYT 7 n 7 DC 7 D CYT 8 n 8 DC 8 D THY 9 n 9 DT 9 D GUA 10 n 10 DG 10 D GUA 11 n 11 DG 11 D ADE 12 n 12 DA 12 D CYT 13 n 13 DC 13 D GUA 14 n 14 DG 14 D CYT 15 n 15 DC 15 D GUA 16 n 1 DG 16 E CYT 17 n 2 DC 17 E GUA 18 n 3 DG 18 E THY 19 n 4 DT 19 E CYT 20 n 5 DC 20 E CYT 21 n 6 DC 21 E ADE 22 n 7 DA 22 E PED 23 n 8 PED 23 E GUA 24 n 9 DG 24 E THY 25 n 10 DT 25 E CYT 26 n 11 DC 26 E THY 27 n 12 DT 27 E ADE 28 n 13 DA 28 E CYT 29 n 14 DC 29 E CYT 30 n 15 DC 30 E n 1 4 A n 2 5 A n 3 6 A n 4 7 A n 5 8 A GLY 9 n 6 GLY 9 A SER 10 n 7 SER 10 A GLU 11 n 8 GLU 11 A GLY 12 n 9 GLY 12 A HIS 13 n 10 HIS 13 A ARG 14 n 11 ARG 14 A THR 15 n 12 THR 15 A LEU 16 n 13 LEU 16 A ALA 17 n 14 ALA 17 A SER 18 n 15 SER 18 A THR 19 n 16 THR 19 A PRO 20 n 17 PRO 20 A ALA 21 n 18 ALA 21 A LEU 22 n 19 LEU 22 A TRP 23 n 20 TRP 23 A ALA 24 n 21 ALA 24 A SER 25 n 22 SER 25 A ILE 26 n 23 ILE 26 A PRO 27 n 24 PRO 27 A CYS 28 n 25 CYS 28 A PRO 29 n 26 PRO 29 A ARG 30 n 27 ARG 30 A SER 31 n 28 SER 31 A GLU 32 n 29 GLU 32 A LEU 33 n 30 LEU 33 A ARG 34 n 31 ARG 34 A LEU 35 n 32 LEU 35 A ASP 36 n 33 ASP 36 A LEU 37 n 34 LEU 37 A VAL 38 n 35 VAL 38 A LEU 39 n 36 LEU 39 A PRO 40 n 37 PRO 40 A SER 41 n 38 SER 41 A GLY 42 n 39 GLY 42 A GLN 43 n 40 GLN 43 A SER 44 n 41 SER 44 A PHE 45 n 42 PHE 45 A ARG 46 n 43 ARG 46 A TRP 47 n 44 TRP 47 A ARG 48 n 45 ARG 48 A GLU 49 n 46 GLU 49 A GLN 50 n 47 GLN 50 A SER 51 n 48 SER 51 A PRO 52 n 49 PRO 52 A ALA 53 n 50 ALA 53 A HIS 54 n 51 HIS 54 A TRP 55 n 52 TRP 55 A SER 56 n 53 SER 56 A GLY 57 n 54 GLY 57 A VAL 58 n 55 VAL 58 A LEU 59 n 56 LEU 59 A ALA 60 n 57 ALA 60 A ASP 61 n 58 ASP 61 A GLN 62 n 59 GLN 62 A VAL 63 n 60 VAL 63 A TRP 64 n 61 TRP 64 A THR 65 n 62 THR 65 A LEU 66 n 63 LEU 66 A THR 67 n 64 THR 67 A GLN 68 n 65 GLN 68 A THR 69 n 66 THR 69 A GLU 70 n 67 GLU 70 A GLU 71 n 68 GLU 71 A GLN 72 n 69 GLN 72 A LEU 73 n 70 LEU 73 A HIS 74 n 71 HIS 74 A CYS 75 n 72 CYS 75 A THR 76 n 73 THR 76 A VAL 77 n 74 VAL 77 A TYR 78 n 75 TYR 78 A ARG 79 n 76 ARG 79 A n 77 80 A n 78 81 A n 79 82 A SER 83 n 80 SER 83 A GLN 84 n 81 GLN 84 A ALA 85 n 82 ALA 85 A SER 86 n 83 SER 86 A ARG 87 n 84 ARG 87 A PRO 88 n 85 PRO 88 A THR 89 n 86 THR 89 A PRO 90 n 87 PRO 90 A ASP 91 n 88 ASP 91 A GLU 92 n 89 GLU 92 A LEU 93 n 90 LEU 93 A GLU 94 n 91 GLU 94 A ALA 95 n 92 ALA 95 A VAL 96 n 93 VAL 96 A ARG 97 n 94 ARG 97 A LYS 98 n 95 LYS 98 A TYR 99 n 96 TYR 99 A PHE 100 n 97 PHE 100 A GLN 101 n 98 GLN 101 A LEU 102 n 99 LEU 102 A ASP 103 n 100 ASP 103 A VAL 104 n 101 VAL 104 A THR 105 n 102 THR 105 A LEU 106 n 103 LEU 106 A ALA 107 n 104 ALA 107 A GLN 108 n 105 GLN 108 A LEU 109 n 106 LEU 109 A TYR 110 n 107 TYR 110 A HIS 111 n 108 HIS 111 A HIS 112 n 109 HIS 112 A TRP 113 n 110 TRP 113 A GLY 114 n 111 GLY 114 A SER 115 n 112 SER 115 A VAL 116 n 113 VAL 116 A ASP 117 n 114 ASP 117 A SER 118 n 115 SER 118 A HIS 119 n 116 HIS 119 A PHE 120 n 117 PHE 120 A GLN 121 n 118 GLN 121 A GLU 122 n 119 GLU 122 A VAL 123 n 120 VAL 123 A ALA 124 n 121 ALA 124 A GLN 125 n 122 GLN 125 A LYS 126 n 123 LYS 126 A PHE 127 n 124 PHE 127 A GLN 128 n 125 GLN 128 A GLY 129 n 126 GLY 129 A VAL 130 n 127 VAL 130 A ARG 131 n 128 ARG 131 A LEU 132 n 129 LEU 132 A LEU 133 n 130 LEU 133 A ARG 134 n 131 ARG 134 A GLN 135 n 132 GLN 135 A ASP 136 n 133 ASP 136 A PRO 137 n 134 PRO 137 A ILE 138 n 135 ILE 138 A GLU 139 n 136 GLU 139 A CYS 140 n 137 CYS 140 A LEU 141 n 138 LEU 141 A PHE 142 n 139 PHE 142 A SER 143 n 140 SER 143 A PHE 144 n 141 PHE 144 A ILE 145 n 142 ILE 145 A CYS 146 n 143 CYS 146 A SER 147 n 144 SER 147 A SER 148 n 145 SER 148 A ASN 149 n 146 ASN 149 A ASN 150 n 147 ASN 150 A ASN 151 n 148 ASN 151 A ILE 152 n 149 ILE 152 A ALA 153 n 150 ALA 153 A ARG 154 n 151 ARG 154 A ILE 155 n 152 ILE 155 A THR 156 n 153 THR 156 A GLY 157 n 154 GLY 157 A MET 158 n 155 MET 158 A VAL 159 n 156 VAL 159 A GLU 160 n 157 GLU 160 A ARG 161 n 158 ARG 161 A LEU 162 n 159 LEU 162 A CYS 163 n 160 CYS 163 A GLN 164 n 161 GLN 164 A ALA 165 n 162 ALA 165 A PHE 166 n 163 PHE 166 A GLY 167 n 164 GLY 167 A PRO 168 n 165 PRO 168 A ARG 169 n 166 ARG 169 A LEU 170 n 167 LEU 170 A ILE 171 n 168 ILE 171 A GLN 172 n 169 GLN 172 A LEU 173 n 170 LEU 173 A ASP 174 n 171 ASP 174 A ASP 175 n 172 ASP 175 A VAL 176 n 173 VAL 176 A THR 177 n 174 THR 177 A TYR 178 n 175 TYR 178 A HIS 179 n 176 HIS 179 A GLY 180 n 177 GLY 180 A PHE 181 n 178 PHE 181 A PRO 182 n 179 PRO 182 A SER 183 n 180 SER 183 A LEU 184 n 181 LEU 184 A GLN 185 n 182 GLN 185 A ALA 186 n 183 ALA 186 A LEU 187 n 184 LEU 187 A ALA 188 n 185 ALA 188 A GLY 189 n 186 GLY 189 A PRO 190 n 187 PRO 190 A GLU 191 n 188 GLU 191 A VAL 192 n 189 VAL 192 A GLU 193 n 190 GLU 193 A ALA 194 n 191 ALA 194 A HIS 195 n 192 HIS 195 A LEU 196 n 193 LEU 196 A ARG 197 n 194 ARG 197 A LYS 198 n 195 LYS 198 A LEU 199 n 196 LEU 199 A GLY 200 n 197 GLY 200 A LEU 201 n 198 LEU 201 A GLY 202 n 199 GLY 202 A TYR 203 n 200 TYR 203 A ARG 204 n 201 ARG 204 A ALA 205 n 202 ALA 205 A ARG 206 n 203 ARG 206 A TYR 207 n 204 TYR 207 A VAL 208 n 205 VAL 208 A SER 209 n 206 SER 209 A ALA 210 n 207 ALA 210 A SER 211 n 208 SER 211 A ALA 212 n 209 ALA 212 A ARG 213 n 210 ARG 213 A ALA 214 n 211 ALA 214 A ILE 215 n 212 ILE 215 A LEU 216 n 213 LEU 216 A GLU 217 n 214 GLU 217 A GLU 218 n 215 GLU 218 A GLN 219 n 216 GLN 219 A GLY 220 n 217 GLY 220 A GLY 221 n 218 GLY 221 A LEU 222 n 219 LEU 222 A ALA 223 n 220 ALA 223 A TRP 224 n 221 TRP 224 A LEU 225 n 222 LEU 225 A GLN 226 n 223 GLN 226 A GLN 227 n 224 GLN 227 A LEU 228 n 225 LEU 228 A ARG 229 n 226 ARG 229 A GLU 230 n 227 GLU 230 A SER 231 n 228 SER 231 A SER 232 n 229 SER 232 A TYR 233 n 230 TYR 233 A GLU 234 n 231 GLU 234 A GLU 235 n 232 GLU 235 A ALA 236 n 233 ALA 236 A HIS 237 n 234 HIS 237 A LYS 238 n 235 LYS 238 A ALA 239 n 236 ALA 239 A LEU 240 n 237 LEU 240 A CYS 241 n 238 CYS 241 A ILE 242 n 239 ILE 242 A LEU 243 n 240 LEU 243 A PRO 244 n 241 PRO 244 A GLY 245 n 242 GLY 245 A VAL 246 n 243 VAL 246 A GLY 247 n 244 GLY 247 A THR 248 n 245 THR 248 A LYS 249 n 246 LYS 249 A VAL 250 n 247 VAL 250 A ALA 251 n 248 ALA 251 A ASP 252 n 249 ASP 252 A CYS 253 n 250 CYS 253 A ILE 254 n 251 ILE 254 A CYS 255 n 252 CYS 255 A LEU 256 n 253 LEU 256 A MET 257 n 254 MET 257 A ALA 258 n 255 ALA 258 A LEU 259 n 256 LEU 259 A ASP 260 n 257 ASP 260 A LYS 261 n 258 LYS 261 A PRO 262 n 259 PRO 262 A GLN 263 n 260 GLN 263 A ALA 264 n 261 ALA 264 A VAL 265 n 262 VAL 265 A PRO 266 n 263 PRO 266 A VAL 267 n 264 VAL 267 A ASP 268 n 265 ASP 268 A VAL 269 n 266 VAL 269 A HIS 270 n 267 HIS 270 A MET 271 n 268 MET 271 A TRP 272 n 269 TRP 272 A HIS 273 n 270 HIS 273 A ILE 274 n 271 ILE 274 A ALA 275 n 272 ALA 275 A GLN 276 n 273 GLN 276 A ARG 277 n 274 ARG 277 A ASP 278 n 275 ASP 278 A TYR 279 n 276 TYR 279 A SER 280 n 277 SER 280 A TRP 281 n 278 TRP 281 A HIS 282 n 279 HIS 282 A PRO 283 n 280 PRO 283 A THR 284 n 281 THR 284 A THR 285 n 282 THR 285 A SER 286 n 283 SER 286 A GLN 287 n 284 GLN 287 A ALA 288 n 285 ALA 288 A LYS 289 n 286 LYS 289 A GLY 290 n 287 GLY 290 A PRO 291 n 288 PRO 291 A SER 292 n 289 SER 292 A PRO 293 n 290 PRO 293 A GLN 294 n 291 GLN 294 A THR 295 n 292 THR 295 A ASN 296 n 293 ASN 296 A LYS 297 n 294 LYS 297 A GLU 298 n 295 GLU 298 A LEU 299 n 296 LEU 299 A GLY 300 n 297 GLY 300 A ASN 301 n 298 ASN 301 A PHE 302 n 299 PHE 302 A PHE 303 n 300 PHE 303 A ARG 304 n 301 ARG 304 A SER 305 n 302 SER 305 A LEU 306 n 303 LEU 306 A TRP 307 n 304 TRP 307 A GLY 308 n 305 GLY 308 A PRO 309 n 306 PRO 309 A TYR 310 n 307 TYR 310 A ALA 311 n 308 ALA 311 A GLY 312 n 309 GLY 312 A TRP 313 n 310 TRP 313 A ALA 314 n 311 ALA 314 A GLN 315 n 312 GLN 315 A ALA 316 n 313 ALA 316 A VAL 317 n 314 VAL 317 A LEU 318 n 315 LEU 318 A PHE 319 n 316 PHE 319 A SER 320 n 317 SER 320 A ALA 321 n 318 ALA 321 A ASP 322 n 319 ASP 322 A LEU 323 n 320 LEU 323 A ARG 324 n 321 ARG 324 A GLN 325 n 322 GLN 325 A n 323 326 A n 324 327 A author_defined_assembly 3 trimeric E HOH 209 G O HOH 1_555 E CA 216 D CA CA 1_555 E HOH 6 G O HOH 1_555 52.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ALA 24 C N ALA 21 A O CYS 75 C O CYS 72 A O HIS 74 C O HIS 71 A N THR 67 C N THR 64 A O GLN 62 C O GLN 59 A N LEU 59 C N LEU 56 A O SER 56 C O SER 53 A N ARG 48 C N ARG 45 A N LEU 173 C N LEU 170 A O VAL 176 C O VAL 173 1 A ALA 4 C ALA 1 1 Y 1 A MET 5 C MET 2 1 Y 1 A ALA 6 C ALA 3 1 Y 1 A ASP 7 C ASP 4 1 Y 1 A ILE 8 C ILE 5 1 Y 1 A GLY 80 C GLY 77 1 Y 1 A ASP 81 C ASP 78 1 Y 1 A LYS 82 C LYS 79 1 Y 1 A SER 326 C SER 323 1 Y 1 A ARG 327 C ARG 324 1 Y 1 D D O3' O3' DC DC 15 15 1.98 1_555 11_655 1 A LEU 22 -102.19 48.41 1 A CYS 28 -171.31 108.17 1 A GLN 43 -100.29 -64.63 1 A LEU 170 -99.76 -80.80 1 A ASP 174 57.05 -131.17 1 A GLU 218 -135.02 -33.00 1 A ARG 324 -68.78 60.19 0.2569 0.2358 2.1 50 2967 31937 29831 93.4 Random 1 THROUGHOUT 2 FOURIER SYNTHESIS 1EBM Engh & Huber 0.33 0.29 5.0 0.27 0.24 2.1 50 164 3266 13 598 2491 0.0057 1.20 21.6 0.301 0.278 2.18 283 85 2.1 50 1LWW 32073 31837 -3 0.101 1 17.4 5.4 99.3 0.457 2.10 2.18 4.9 3096 5.4 100 data reduction DENZO data scaling SCALEPACK refinement CNS phasing CNS 8-OXOGUANINE DNA GLYCOSYLASE (E.C.3.2.2.-)/DNA Complex Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-bromoguanine 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 6 N N 6 N N A THR 19 C THR 16 HELX_P A TRP 23 C TRP 20 5 1 5 A ARG 34 C ARG 31 HELX_P A LEU 39 C LEU 36 1 2 6 A THR 89 C THR 86 HELX_P A PHE 100 C PHE 97 1 3 12 A THR 105 C THR 102 HELX_P A ASP 117 C ASP 114 1 4 13 A ASP 117 C ASP 114 HELX_P A GLN 125 C GLN 122 1 5 9 A ASP 136 C ASP 133 HELX_P A CYS 146 C CYS 143 1 6 11 A ASN 151 C ASN 148 HELX_P A GLY 167 C GLY 164 1 7 17 A SER 183 C SER 180 HELX_P A ALA 188 C ALA 185 1 8 6 A GLU 191 C GLU 188 HELX_P A LEU 199 C LEU 196 1 9 9 A TYR 203 C TYR 200 HELX_P A GLU 218 C GLU 215 1 10 16 A GLY 221 C GLY 218 HELX_P A ARG 229 C ARG 226 1 11 9 A SER 232 C SER 229 HELX_P A CYS 241 C CYS 238 1 12 10 A GLY 247 C GLY 244 HELX_P A LEU 259 C LEU 256 1 13 13 A ASP 268 C ASP 265 HELX_P A SER 280 C SER 277 1 14 13 A SER 292 C SER 289 HELX_P A GLY 308 C GLY 305 1 15 17 A TYR 310 C TYR 307 HELX_P A ARG 324 C ARG 321 1 16 15 covale 1.452 E PED 23 B C1' PED 8 1_555 A LYS 249 C NZ LYS 246 1_555 covale 1.603 E DA 22 B O3' DA 7 1_555 E PED 23 B P PED 8 1_555 covale 1.611 E PED 23 B O3' PED 8 1_555 E DG 24 B P DG 9 1_555 metalc 3.044 E CA 216 D CA CA 1_555 E HOH 209 G O HOH 1_555 metalc 2.661 E CA 216 D CA CA 1_555 E HOH 6 G O HOH 1_555 hydrog DG-DC PAIR D DG 1 A N1 DG 1 1_555 E DC 30 B O2 DC 15 1_555 hydrog WATSON-CRICK D DG 2 A N1 DG 2 1_555 E DC 29 B N3 DC 14 1_555 hydrog WATSON-CRICK D DG 2 A N2 DG 2 1_555 E DC 29 B O2 DC 14 1_555 hydrog WATSON-CRICK D DG 2 A O6 DG 2 1_555 E DC 29 B N4 DC 14 1_555 hydrog DT-DA PAIR D DT 3 A O4 DT 3 1_555 E DA 28 B N6 DA 13 1_555 hydrog WATSON-CRICK D DA 4 A N1 DA 4 1_555 E DT 27 B N3 DT 12 1_555 hydrog WATSON-CRICK D DA 4 A N6 DA 4 1_555 E DT 27 B O4 DT 12 1_555 hydrog WATSON-CRICK D DG 5 A N1 DG 5 1_555 E DC 26 B N3 DC 11 1_555 hydrog WATSON-CRICK D DG 5 A N2 DG 5 1_555 E DC 26 B O2 DC 11 1_555 hydrog WATSON-CRICK D DG 5 A O6 DG 5 1_555 E DC 26 B N4 DC 11 1_555 hydrog WATSON-CRICK D DA 6 A N1 DA 6 1_555 E DT 25 B N3 DT 10 1_555 hydrog WATSON-CRICK D DA 6 A N6 DA 6 1_555 E DT 25 B O4 DT 10 1_555 hydrog WATSON-CRICK D DC 7 A N3 DC 7 1_555 E DG 24 B N1 DG 9 1_555 hydrog WATSON-CRICK D DC 7 A N4 DC 7 1_555 E DG 24 B O6 DG 9 1_555 hydrog WATSON-CRICK D DC 7 A O2 DC 7 1_555 E DG 24 B N2 DG 9 1_555 hydrog WATSON-CRICK D DT 9 A N3 DT 9 1_555 E DA 22 B N1 DA 7 1_555 hydrog WATSON-CRICK D DT 9 A O4 DT 9 1_555 E DA 22 B N6 DA 7 1_555 hydrog WATSON-CRICK D DG 10 A N1 DG 10 1_555 E DC 21 B N3 DC 6 1_555 hydrog WATSON-CRICK D DG 10 A N2 DG 10 1_555 E DC 21 B O2 DC 6 1_555 hydrog WATSON-CRICK D DG 10 A O6 DG 10 1_555 E DC 21 B N4 DC 6 1_555 hydrog WATSON-CRICK D DG 11 A N1 DG 11 1_555 E DC 20 B N3 DC 5 1_555 hydrog WATSON-CRICK D DG 11 A N2 DG 11 1_555 E DC 20 B O2 DC 5 1_555 hydrog WATSON-CRICK D DG 11 A O6 DG 11 1_555 E DC 20 B N4 DC 5 1_555 hydrog WATSON-CRICK D DA 12 A N1 DA 12 1_555 E DT 19 B N3 DT 4 1_555 hydrog WATSON-CRICK D DA 12 A N6 DA 12 1_555 E DT 19 B O4 DT 4 1_555 hydrog WATSON-CRICK D DC 13 A N3 DC 13 1_555 E DG 18 B N1 DG 3 1_555 hydrog WATSON-CRICK D DC 13 A N4 DC 13 1_555 E DG 18 B O6 DG 3 1_555 hydrog WATSON-CRICK D DC 13 A O2 DC 13 1_555 E DG 18 B N2 DG 3 1_555 hydrog WATSON-CRICK D DG 14 A N1 DG 14 1_555 E DC 17 B N3 DC 2 1_555 hydrog WATSON-CRICK D DG 14 A N2 DG 14 1_555 E DC 17 B O2 DC 2 1_555 hydrog WATSON-CRICK D DG 14 A O6 DG 14 1_555 E DC 17 B N4 DC 2 1_555 HYDROLASE/DNA DNA REPAIR, DNA GLYCOSYLASE, PROTEIN/DNA, BOROHYDRIDE, COVALENT TRAPPING, PRODUCT-ASSISTED CATALYSIS, REACTION INTERMEDIATE, HYDROLASE-DNA COMPLEX OGG1_HUMAN UNP 3 12 O15527 GHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPD ELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLI QLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVA DCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLRQSR 1LWW PDB 1 1LWW 1LWW PDB 2 1LWW 12 327 1LWW 12 327 O15527 A 1 9 324 1 15 1LWW 1 15 1LWW D 2 1 15 16 30 1LWW 16 30 1LWW E 3 1 15 1 CLONING ARTIFACT ALA 4 1LWW A O15527 UNP 1 1 CLONING ARTIFACT MET 5 1LWW A O15527 UNP 2 1 CLONING ARTIFACT ALA 6 1LWW A O15527 UNP 3 1 CLONING ARTIFACT ASP 7 1LWW A O15527 UNP 4 1 CLONING ARTIFACT ILE 8 1LWW A O15527 UNP 5 1 CLONING ARTIFACT GLY 9 1LWW A O15527 UNP 6 1 CLONING ARTIFACT SER 10 1LWW A O15527 UNP 7 1 CLONING ARTIFACT GLU 11 1LWW A O15527 UNP 8 5 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ALA 24 C ALA 21 A PRO 27 C PRO 24 A GLN 72 C GLN 69 A TYR 78 C TYR 75 A GLN 62 C GLN 59 A GLN 68 C GLN 65 A HIS 54 C HIS 51 A LEU 59 C LEU 56 A ARG 48 C ARG 45 A SER 51 C SER 48 A ARG 169 C ARG 166 A LEU 173 C LEU 170 A VAL 176 C VAL 173 A HIS 179 C HIS 176 BINDING SITE FOR RESIDUE CA E 216 Software 2 BINDING SITE FOR RESIDUE BRG A 328 Software 12 E HOH 6 G HOH 2 1_555 E HOH 209 G HOH 2 1_555 A GLY 42 C GLY 39 12 1_555 A PHE 45 C PHE 42 12 1_555 A SER 147 C SER 144 12 1_555 A LYS 249 C LYS 246 12 1_555 A PRO 266 C PRO 263 12 1_555 A ASP 268 C ASP 265 12 1_555 A MET 271 C MET 268 12 1_555 A GLN 315 C GLN 312 12 1_555 A PHE 319 C PHE 316 12 1_555 A HOH 405 H HOH 12 1_555 A HOH 424 H HOH 12 1_555 E PED 23 B PED 8 12 1_555 179 P 65 2 2