0.010849
0.006264
0.000000
0.000000
0.012527
0.000000
0.000000
0.000000
0.004719
0.00000
0.00000
0.00000
Fromme, J.C.
Bruner, S.D.
Yang, W.
Karplus, M.
Verdine, G.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
92.174
92.174
211.887
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H4 Br N5 O
230.022
8-BROMOGUANINE
non-polymer
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H13 O6 P
200.127
PENTANE-3,4-DIOL-5-PHOSPHATE
OPEN FORM OF 1'-2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
10
204
211
10.1038/nsb902
12592398
Product-Assisted Catalysis in Base Excision DNA Repair
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2001-12-15
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
0.95
1.0
A1
CHESS
0.95
SYNCHROTRON
CHESS BEAMLINE A1
4635.010
5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'
1
syn
polymer
4398.854
5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3'
1
syn
polymer
36394.176
8-OXOGUANINE DNA GLYCOSYLASE
3.2.2.-
CORE FRAGMENT (RESIDUES 12 TO 327)
1
man
polymer
40.078
CALCIUM ION
1
syn
non-polymer
230.022
8-BROMOGUANINE
1
syn
non-polymer
18.015
water
164
nat
water
no
no
(DG)(DG)(DT)(DA)(DG)(DA)(DC)(DC)(DT)(DG)(DG)(DA)(DC)(DG)(DC)
GGTAGACCTGGACGC
D
polydeoxyribonucleotide
no
yes
(DG)(DC)(DG)(DT)(DC)(DC)(DA)(PED)(DG)(DT)(DC)(DT)(DA)(DC)(DC)
GCGTCCAXGTCTACC
E
polydeoxyribonucleotide
no
no
AMADIGSEGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKS
QASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLC
QAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCIL
PGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL
RQSR
AMADIGSEGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKS
QASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLC
QAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCIL
PGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL
RQSR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
ogg1
9606
Homo sapiens
562
Escherichia coli
1
2.83
56.61
VAPOR DIFFUSION, HANGING DROP
6.3
sodium cacodylate, calcium acetate, PEG 8000, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
sodium cacodylate
1
calcium acetate
1
PEG 8000
1
-5.560
1
D
1
E
30
25.531
D_DG1:DC30_E
1
-30.584
-1.770
-0.466
-0.414
-15.425
1
19
D
2
E
29
-6.076
D_DG2:DC29_E
2
1.689
0.248
-0.288
-0.157
-20.491
D
3
E
28
-97.908
D_DT3:DA28_E
3
1.453
0.126
0.719
2.025
-10.180
1
20
D
4
E
27
5.150
D_DA4:DT27_E
4
-19.514
-0.445
-0.650
-0.371
1.620
1
19
D
5
E
26
-8.066
D_DG5:DC26_E
5
-11.826
-0.305
-0.231
-0.019
6.066
1
20
D
6
E
25
-5.170
D_DA6:DT25_E
6
-8.270
0.079
0.250
0.257
17.551
1
19
D
7
E
24
1.496
D_DC7:DG24_E
7
-6.211
0.434
-0.147
-0.235
-9.980
1
20
D
9
E
22
2.348
D_DT9:DA22_E
8
-13.726
-0.131
0.082
-0.084
6.082
1
19
D
10
E
21
-0.259
D_DG10:DC21_E
9
-3.918
-0.660
0.271
-0.394
0.279
1
19
D
11
E
20
-3.388
D_DG11:DC20_E
10
-13.679
0.004
-0.125
-0.196
-5.398
1
20
D
12
E
19
-0.621
D_DA12:DT19_E
11
-15.005
0.399
-0.204
-0.294
-2.802
1
19
D
13
E
18
-8.011
D_DC13:DG18_E
12
-11.396
0.089
-0.076
0.128
12.467
1
19
D
14
E
17
4.469
D_DG14:DC17_E
13
-2.524
0.841
0.577
0.130
4.053
48.316
D
D
1
2
8.316
E
E
30
29
3.881
6.724
-1.195
0.263
DD_DG1DG2:DC29DC30_EE
1
-11.986
14.825
46.433
-0.327
0.303
3.065
80.372
D
D
2
3
6.737
E
E
29
28
3.179
8.683
-0.086
-1.136
DD_DG2DT3:DA28DC29_EE
2
-1.347
1.045
79.971
-1.098
0.033
3.712
-11.571
D
D
3
4
54.074
E
E
28
27
3.440
-9.041
0.449
2.738
DD_DT3DA4:DT27DA28_EE
3
4.253
25.437
-5.842
4.813
10.882
2.940
31.046
D
D
4
5
22.736
E
E
27
26
3.101
11.805
-0.215
0.210
DD_DA4DG5:DC26DT27_EE
4
-5.700
10.978
28.204
-1.809
-0.661
3.063
37.526
D
D
5
6
6.842
E
E
26
25
3.080
4.386
-0.291
-0.102
DD_DG5DA6:DT25DC26_EE
5
-3.525
5.499
37.117
-0.699
0.017
3.205
34.675
D
D
6
7
-6.367
E
E
25
24
3.107
-3.774
0.937
-0.120
DD_DA6DC7:DG24DT25_EE
6
5.170
-8.722
34.097
0.363
-0.799
3.043
27.796
D
D
9
10
12.104
E
E
22
21
2.964
5.766
0.245
0.855
DD_DT9DG10:DC21DA22_EE
7
-2.497
5.242
27.090
0.492
-1.069
3.461
42.375
D
D
10
11
12.254
E
E
21
20
3.482
8.797
-1.063
0.046
DD_DG10DG11:DC20DC21_EE
8
-1.744
2.429
41.458
-0.900
1.279
3.439
36.835
D
D
11
12
1.187
E
E
20
19
3.444
0.750
-0.067
-0.217
DD_DG11DA12:DT19DC20_EE
9
-0.610
0.966
36.823
-0.450
0.020
3.058
28.752
D
D
12
13
3.936
E
E
19
18
3.121
1.953
-0.030
-0.839
DD_DA12DC13:DG18DT19_EE
10
-0.311
0.627
28.685
-2.103
-0.006
3.015
42.602
D
D
13
14
-1.686
E
E
18
17
3.021
-1.225
1.260
0.694
DD_DC13DG14:DC17DG18_EE
11
0.524
-0.721
42.582
1.069
-1.685
repository
Initial release
Version format compliance
Version format compliance
1
0
2003-02-25
1
1
2008-04-28
1
2
2011-07-13
1HU0 IS the CRYSTAL STRUCTURE OF AN HOGG1-DNA BOROHYDRIDE TRAPPED INTERMEDIATE COMPLEX
1LWV IS Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-aminoguanine
1LWY IS Borohydride-Trapped hOgg1 Intermediate without 8-oxoguanine
1EBM is the Crystal Structure Of The Human 8-Oxoguanine Glycosylase (Hogg1) Bound To A Substrate Oligonucleotide
1FN7 IS the Coupling Of Damage Recognition and Catalysis By A Human Base-Excision DNA Repair Protein
RCSB
Y
RCSB
2002-06-03
REL
REL
CA
CALCIUM ION
BRG
8-BROMOGUANINE
HOH
water
CA
1
4
CA
CA
216
E
BRG
150
5
BRG
BRG
328
A
HOH
61
6
HOH
HOH
61
D
HOH
141
6
HOH
HOH
141
D
HOH
147
6
HOH
HOH
147
D
HOH
158
6
HOH
HOH
158
D
HOH
159
6
HOH
HOH
159
D
HOH
163
6
HOH
HOH
163
D
HOH
179
6
HOH
HOH
179
D
HOH
191
6
HOH
HOH
191
D
HOH
6
6
HOH
HOH
6
E
HOH
47
6
HOH
HOH
47
E
HOH
60
6
HOH
HOH
60
E
HOH
74
6
HOH
HOH
74
E
HOH
138
6
HOH
HOH
138
E
HOH
177
6
HOH
HOH
177
E
HOH
208
6
HOH
HOH
208
E
HOH
209
6
HOH
HOH
209
E
HOH
1
6
HOH
HOH
329
A
HOH
2
6
HOH
HOH
330
A
HOH
3
6
HOH
HOH
331
A
HOH
4
6
HOH
HOH
332
A
HOH
5
6
HOH
HOH
333
A
HOH
7
6
HOH
HOH
334
A
HOH
8
6
HOH
HOH
335
A
HOH
9
6
HOH
HOH
336
A
HOH
10
6
HOH
HOH
337
A
HOH
11
6
HOH
HOH
338
A
HOH
12
6
HOH
HOH
339
A
HOH
13
6
HOH
HOH
340
A
HOH
14
6
HOH
HOH
341
A
HOH
15
6
HOH
HOH
342
A
HOH
16
6
HOH
HOH
343
A
HOH
17
6
HOH
HOH
344
A
HOH
18
6
HOH
HOH
345
A
HOH
19
6
HOH
HOH
346
A
HOH
20
6
HOH
HOH
347
A
HOH
21
6
HOH
HOH
348
A
HOH
22
6
HOH
HOH
349
A
HOH
23
6
HOH
HOH
350
A
HOH
24
6
HOH
HOH
351
A
HOH
25
6
HOH
HOH
352
A
HOH
26
6
HOH
HOH
353
A
HOH
27
6
HOH
HOH
354
A
HOH
28
6
HOH
HOH
355
A
HOH
29
6
HOH
HOH
356
A
HOH
30
6
HOH
HOH
357
A
HOH
31
6
HOH
HOH
358
A
HOH
32
6
HOH
HOH
359
A
HOH
33
6
HOH
HOH
360
A
HOH
34
6
HOH
HOH
361
A
HOH
35
6
HOH
HOH
362
A
HOH
36
6
HOH
HOH
363
A
HOH
37
6
HOH
HOH
364
A
HOH
38
6
HOH
HOH
365
A
HOH
39
6
HOH
HOH
366
A
HOH
40
6
HOH
HOH
367
A
HOH
41
6
HOH
HOH
368
A
HOH
42
6
HOH
HOH
369
A
HOH
43
6
HOH
HOH
370
A
HOH
44
6
HOH
HOH
371
A
HOH
45
6
HOH
HOH
372
A
HOH
46
6
HOH
HOH
373
A
HOH
48
6
HOH
HOH
374
A
HOH
49
6
HOH
HOH
375
A
HOH
51
6
HOH
HOH
376
A
HOH
52
6
HOH
HOH
377
A
HOH
53
6
HOH
HOH
378
A
HOH
55
6
HOH
HOH
379
A
HOH
56
6
HOH
HOH
380
A
HOH
62
6
HOH
HOH
381
A
HOH
65
6
HOH
HOH
382
A
HOH
66
6
HOH
HOH
383
A
HOH
69
6
HOH
HOH
384
A
HOH
70
6
HOH
HOH
385
A
HOH
71
6
HOH
HOH
386
A
HOH
72
6
HOH
HOH
387
A
HOH
75
6
HOH
HOH
388
A
HOH
76
6
HOH
HOH
389
A
HOH
77
6
HOH
HOH
390
A
HOH
78
6
HOH
HOH
391
A
HOH
79
6
HOH
HOH
392
A
HOH
80
6
HOH
HOH
393
A
HOH
81
6
HOH
HOH
394
A
HOH
82
6
HOH
HOH
395
A
HOH
85
6
HOH
HOH
396
A
HOH
88
6
HOH
HOH
397
A
HOH
90
6
HOH
HOH
398
A
HOH
96
6
HOH
HOH
399
A
HOH
97
6
HOH
HOH
400
A
HOH
98
6
HOH
HOH
401
A
HOH
99
6
HOH
HOH
402
A
HOH
100
6
HOH
HOH
403
A
HOH
101
6
HOH
HOH
404
A
HOH
102
6
HOH
HOH
405
A
HOH
103
6
HOH
HOH
406
A
HOH
105
6
HOH
HOH
407
A
HOH
106
6
HOH
HOH
408
A
HOH
107
6
HOH
HOH
409
A
HOH
108
6
HOH
HOH
410
A
HOH
109
6
HOH
HOH
411
A
HOH
110
6
HOH
HOH
412
A
HOH
111
6
HOH
HOH
413
A
HOH
112
6
HOH
HOH
414
A
HOH
113
6
HOH
HOH
415
A
HOH
114
6
HOH
HOH
416
A
HOH
116
6
HOH
HOH
417
A
HOH
117
6
HOH
HOH
418
A
HOH
118
6
HOH
HOH
419
A
HOH
120
6
HOH
HOH
420
A
HOH
121
6
HOH
HOH
421
A
HOH
122
6
HOH
HOH
422
A
HOH
123
6
HOH
HOH
423
A
HOH
124
6
HOH
HOH
424
A
HOH
125
6
HOH
HOH
425
A
HOH
126
6
HOH
HOH
426
A
HOH
128
6
HOH
HOH
427
A
HOH
129
6
HOH
HOH
428
A
HOH
130
6
HOH
HOH
429
A
HOH
131
6
HOH
HOH
430
A
HOH
134
6
HOH
HOH
431
A
HOH
135
6
HOH
HOH
432
A
HOH
136
6
HOH
HOH
433
A
HOH
137
6
HOH
HOH
434
A
HOH
139
6
HOH
HOH
435
A
HOH
140
6
HOH
HOH
436
A
HOH
142
6
HOH
HOH
437
A
HOH
143
6
HOH
HOH
438
A
HOH
144
6
HOH
HOH
439
A
HOH
146
6
HOH
HOH
440
A
HOH
149
6
HOH
HOH
441
A
HOH
150
6
HOH
HOH
442
A
HOH
151
6
HOH
HOH
443
A
HOH
152
6
HOH
HOH
444
A
HOH
153
6
HOH
HOH
445
A
HOH
154
6
HOH
HOH
446
A
HOH
156
6
HOH
HOH
447
A
HOH
157
6
HOH
HOH
448
A
HOH
162
6
HOH
HOH
449
A
HOH
168
6
HOH
HOH
450
A
HOH
169
6
HOH
HOH
451
A
HOH
172
6
HOH
HOH
452
A
HOH
174
6
HOH
HOH
453
A
HOH
175
6
HOH
HOH
454
A
HOH
176
6
HOH
HOH
455
A
HOH
178
6
HOH
HOH
456
A
HOH
181
6
HOH
HOH
457
A
HOH
182
6
HOH
HOH
458
A
HOH
184
6
HOH
HOH
459
A
HOH
185
6
HOH
HOH
460
A
HOH
186
6
HOH
HOH
461
A
HOH
187
6
HOH
HOH
462
A
HOH
188
6
HOH
HOH
463
A
HOH
189
6
HOH
HOH
464
A
HOH
190
6
HOH
HOH
465
A
HOH
192
6
HOH
HOH
466
A
HOH
195
6
HOH
HOH
467
A
HOH
198
6
HOH
HOH
468
A
HOH
200
6
HOH
HOH
469
A
HOH
202
6
HOH
HOH
470
A
HOH
203
6
HOH
HOH
471
A
HOH
205
6
HOH
HOH
472
A
HOH
207
6
HOH
HOH
473
A
HOH
211
6
HOH
HOH
474
A
HOH
212
6
HOH
HOH
475
A
HOH
215
6
HOH
HOH
476
A
GUA
1
n
1
DG
1
D
GUA
2
n
2
DG
2
D
THY
3
n
3
DT
3
D
ADE
4
n
4
DA
4
D
GUA
5
n
5
DG
5
D
ADE
6
n
6
DA
6
D
CYT
7
n
7
DC
7
D
CYT
8
n
8
DC
8
D
THY
9
n
9
DT
9
D
GUA
10
n
10
DG
10
D
GUA
11
n
11
DG
11
D
ADE
12
n
12
DA
12
D
CYT
13
n
13
DC
13
D
GUA
14
n
14
DG
14
D
CYT
15
n
15
DC
15
D
GUA
16
n
1
DG
16
E
CYT
17
n
2
DC
17
E
GUA
18
n
3
DG
18
E
THY
19
n
4
DT
19
E
CYT
20
n
5
DC
20
E
CYT
21
n
6
DC
21
E
ADE
22
n
7
DA
22
E
PED
23
n
8
PED
23
E
GUA
24
n
9
DG
24
E
THY
25
n
10
DT
25
E
CYT
26
n
11
DC
26
E
THY
27
n
12
DT
27
E
ADE
28
n
13
DA
28
E
CYT
29
n
14
DC
29
E
CYT
30
n
15
DC
30
E
n
1
4
A
n
2
5
A
n
3
6
A
n
4
7
A
n
5
8
A
GLY
9
n
6
GLY
9
A
SER
10
n
7
SER
10
A
GLU
11
n
8
GLU
11
A
GLY
12
n
9
GLY
12
A
HIS
13
n
10
HIS
13
A
ARG
14
n
11
ARG
14
A
THR
15
n
12
THR
15
A
LEU
16
n
13
LEU
16
A
ALA
17
n
14
ALA
17
A
SER
18
n
15
SER
18
A
THR
19
n
16
THR
19
A
PRO
20
n
17
PRO
20
A
ALA
21
n
18
ALA
21
A
LEU
22
n
19
LEU
22
A
TRP
23
n
20
TRP
23
A
ALA
24
n
21
ALA
24
A
SER
25
n
22
SER
25
A
ILE
26
n
23
ILE
26
A
PRO
27
n
24
PRO
27
A
CYS
28
n
25
CYS
28
A
PRO
29
n
26
PRO
29
A
ARG
30
n
27
ARG
30
A
SER
31
n
28
SER
31
A
GLU
32
n
29
GLU
32
A
LEU
33
n
30
LEU
33
A
ARG
34
n
31
ARG
34
A
LEU
35
n
32
LEU
35
A
ASP
36
n
33
ASP
36
A
LEU
37
n
34
LEU
37
A
VAL
38
n
35
VAL
38
A
LEU
39
n
36
LEU
39
A
PRO
40
n
37
PRO
40
A
SER
41
n
38
SER
41
A
GLY
42
n
39
GLY
42
A
GLN
43
n
40
GLN
43
A
SER
44
n
41
SER
44
A
PHE
45
n
42
PHE
45
A
ARG
46
n
43
ARG
46
A
TRP
47
n
44
TRP
47
A
ARG
48
n
45
ARG
48
A
GLU
49
n
46
GLU
49
A
GLN
50
n
47
GLN
50
A
SER
51
n
48
SER
51
A
PRO
52
n
49
PRO
52
A
ALA
53
n
50
ALA
53
A
HIS
54
n
51
HIS
54
A
TRP
55
n
52
TRP
55
A
SER
56
n
53
SER
56
A
GLY
57
n
54
GLY
57
A
VAL
58
n
55
VAL
58
A
LEU
59
n
56
LEU
59
A
ALA
60
n
57
ALA
60
A
ASP
61
n
58
ASP
61
A
GLN
62
n
59
GLN
62
A
VAL
63
n
60
VAL
63
A
TRP
64
n
61
TRP
64
A
THR
65
n
62
THR
65
A
LEU
66
n
63
LEU
66
A
THR
67
n
64
THR
67
A
GLN
68
n
65
GLN
68
A
THR
69
n
66
THR
69
A
GLU
70
n
67
GLU
70
A
GLU
71
n
68
GLU
71
A
GLN
72
n
69
GLN
72
A
LEU
73
n
70
LEU
73
A
HIS
74
n
71
HIS
74
A
CYS
75
n
72
CYS
75
A
THR
76
n
73
THR
76
A
VAL
77
n
74
VAL
77
A
TYR
78
n
75
TYR
78
A
ARG
79
n
76
ARG
79
A
n
77
80
A
n
78
81
A
n
79
82
A
SER
83
n
80
SER
83
A
GLN
84
n
81
GLN
84
A
ALA
85
n
82
ALA
85
A
SER
86
n
83
SER
86
A
ARG
87
n
84
ARG
87
A
PRO
88
n
85
PRO
88
A
THR
89
n
86
THR
89
A
PRO
90
n
87
PRO
90
A
ASP
91
n
88
ASP
91
A
GLU
92
n
89
GLU
92
A
LEU
93
n
90
LEU
93
A
GLU
94
n
91
GLU
94
A
ALA
95
n
92
ALA
95
A
VAL
96
n
93
VAL
96
A
ARG
97
n
94
ARG
97
A
LYS
98
n
95
LYS
98
A
TYR
99
n
96
TYR
99
A
PHE
100
n
97
PHE
100
A
GLN
101
n
98
GLN
101
A
LEU
102
n
99
LEU
102
A
ASP
103
n
100
ASP
103
A
VAL
104
n
101
VAL
104
A
THR
105
n
102
THR
105
A
LEU
106
n
103
LEU
106
A
ALA
107
n
104
ALA
107
A
GLN
108
n
105
GLN
108
A
LEU
109
n
106
LEU
109
A
TYR
110
n
107
TYR
110
A
HIS
111
n
108
HIS
111
A
HIS
112
n
109
HIS
112
A
TRP
113
n
110
TRP
113
A
GLY
114
n
111
GLY
114
A
SER
115
n
112
SER
115
A
VAL
116
n
113
VAL
116
A
ASP
117
n
114
ASP
117
A
SER
118
n
115
SER
118
A
HIS
119
n
116
HIS
119
A
PHE
120
n
117
PHE
120
A
GLN
121
n
118
GLN
121
A
GLU
122
n
119
GLU
122
A
VAL
123
n
120
VAL
123
A
ALA
124
n
121
ALA
124
A
GLN
125
n
122
GLN
125
A
LYS
126
n
123
LYS
126
A
PHE
127
n
124
PHE
127
A
GLN
128
n
125
GLN
128
A
GLY
129
n
126
GLY
129
A
VAL
130
n
127
VAL
130
A
ARG
131
n
128
ARG
131
A
LEU
132
n
129
LEU
132
A
LEU
133
n
130
LEU
133
A
ARG
134
n
131
ARG
134
A
GLN
135
n
132
GLN
135
A
ASP
136
n
133
ASP
136
A
PRO
137
n
134
PRO
137
A
ILE
138
n
135
ILE
138
A
GLU
139
n
136
GLU
139
A
CYS
140
n
137
CYS
140
A
LEU
141
n
138
LEU
141
A
PHE
142
n
139
PHE
142
A
SER
143
n
140
SER
143
A
PHE
144
n
141
PHE
144
A
ILE
145
n
142
ILE
145
A
CYS
146
n
143
CYS
146
A
SER
147
n
144
SER
147
A
SER
148
n
145
SER
148
A
ASN
149
n
146
ASN
149
A
ASN
150
n
147
ASN
150
A
ASN
151
n
148
ASN
151
A
ILE
152
n
149
ILE
152
A
ALA
153
n
150
ALA
153
A
ARG
154
n
151
ARG
154
A
ILE
155
n
152
ILE
155
A
THR
156
n
153
THR
156
A
GLY
157
n
154
GLY
157
A
MET
158
n
155
MET
158
A
VAL
159
n
156
VAL
159
A
GLU
160
n
157
GLU
160
A
ARG
161
n
158
ARG
161
A
LEU
162
n
159
LEU
162
A
CYS
163
n
160
CYS
163
A
GLN
164
n
161
GLN
164
A
ALA
165
n
162
ALA
165
A
PHE
166
n
163
PHE
166
A
GLY
167
n
164
GLY
167
A
PRO
168
n
165
PRO
168
A
ARG
169
n
166
ARG
169
A
LEU
170
n
167
LEU
170
A
ILE
171
n
168
ILE
171
A
GLN
172
n
169
GLN
172
A
LEU
173
n
170
LEU
173
A
ASP
174
n
171
ASP
174
A
ASP
175
n
172
ASP
175
A
VAL
176
n
173
VAL
176
A
THR
177
n
174
THR
177
A
TYR
178
n
175
TYR
178
A
HIS
179
n
176
HIS
179
A
GLY
180
n
177
GLY
180
A
PHE
181
n
178
PHE
181
A
PRO
182
n
179
PRO
182
A
SER
183
n
180
SER
183
A
LEU
184
n
181
LEU
184
A
GLN
185
n
182
GLN
185
A
ALA
186
n
183
ALA
186
A
LEU
187
n
184
LEU
187
A
ALA
188
n
185
ALA
188
A
GLY
189
n
186
GLY
189
A
PRO
190
n
187
PRO
190
A
GLU
191
n
188
GLU
191
A
VAL
192
n
189
VAL
192
A
GLU
193
n
190
GLU
193
A
ALA
194
n
191
ALA
194
A
HIS
195
n
192
HIS
195
A
LEU
196
n
193
LEU
196
A
ARG
197
n
194
ARG
197
A
LYS
198
n
195
LYS
198
A
LEU
199
n
196
LEU
199
A
GLY
200
n
197
GLY
200
A
LEU
201
n
198
LEU
201
A
GLY
202
n
199
GLY
202
A
TYR
203
n
200
TYR
203
A
ARG
204
n
201
ARG
204
A
ALA
205
n
202
ALA
205
A
ARG
206
n
203
ARG
206
A
TYR
207
n
204
TYR
207
A
VAL
208
n
205
VAL
208
A
SER
209
n
206
SER
209
A
ALA
210
n
207
ALA
210
A
SER
211
n
208
SER
211
A
ALA
212
n
209
ALA
212
A
ARG
213
n
210
ARG
213
A
ALA
214
n
211
ALA
214
A
ILE
215
n
212
ILE
215
A
LEU
216
n
213
LEU
216
A
GLU
217
n
214
GLU
217
A
GLU
218
n
215
GLU
218
A
GLN
219
n
216
GLN
219
A
GLY
220
n
217
GLY
220
A
GLY
221
n
218
GLY
221
A
LEU
222
n
219
LEU
222
A
ALA
223
n
220
ALA
223
A
TRP
224
n
221
TRP
224
A
LEU
225
n
222
LEU
225
A
GLN
226
n
223
GLN
226
A
GLN
227
n
224
GLN
227
A
LEU
228
n
225
LEU
228
A
ARG
229
n
226
ARG
229
A
GLU
230
n
227
GLU
230
A
SER
231
n
228
SER
231
A
SER
232
n
229
SER
232
A
TYR
233
n
230
TYR
233
A
GLU
234
n
231
GLU
234
A
GLU
235
n
232
GLU
235
A
ALA
236
n
233
ALA
236
A
HIS
237
n
234
HIS
237
A
LYS
238
n
235
LYS
238
A
ALA
239
n
236
ALA
239
A
LEU
240
n
237
LEU
240
A
CYS
241
n
238
CYS
241
A
ILE
242
n
239
ILE
242
A
LEU
243
n
240
LEU
243
A
PRO
244
n
241
PRO
244
A
GLY
245
n
242
GLY
245
A
VAL
246
n
243
VAL
246
A
GLY
247
n
244
GLY
247
A
THR
248
n
245
THR
248
A
LYS
249
n
246
LYS
249
A
VAL
250
n
247
VAL
250
A
ALA
251
n
248
ALA
251
A
ASP
252
n
249
ASP
252
A
CYS
253
n
250
CYS
253
A
ILE
254
n
251
ILE
254
A
CYS
255
n
252
CYS
255
A
LEU
256
n
253
LEU
256
A
MET
257
n
254
MET
257
A
ALA
258
n
255
ALA
258
A
LEU
259
n
256
LEU
259
A
ASP
260
n
257
ASP
260
A
LYS
261
n
258
LYS
261
A
PRO
262
n
259
PRO
262
A
GLN
263
n
260
GLN
263
A
ALA
264
n
261
ALA
264
A
VAL
265
n
262
VAL
265
A
PRO
266
n
263
PRO
266
A
VAL
267
n
264
VAL
267
A
ASP
268
n
265
ASP
268
A
VAL
269
n
266
VAL
269
A
HIS
270
n
267
HIS
270
A
MET
271
n
268
MET
271
A
TRP
272
n
269
TRP
272
A
HIS
273
n
270
HIS
273
A
ILE
274
n
271
ILE
274
A
ALA
275
n
272
ALA
275
A
GLN
276
n
273
GLN
276
A
ARG
277
n
274
ARG
277
A
ASP
278
n
275
ASP
278
A
TYR
279
n
276
TYR
279
A
SER
280
n
277
SER
280
A
TRP
281
n
278
TRP
281
A
HIS
282
n
279
HIS
282
A
PRO
283
n
280
PRO
283
A
THR
284
n
281
THR
284
A
THR
285
n
282
THR
285
A
SER
286
n
283
SER
286
A
GLN
287
n
284
GLN
287
A
ALA
288
n
285
ALA
288
A
LYS
289
n
286
LYS
289
A
GLY
290
n
287
GLY
290
A
PRO
291
n
288
PRO
291
A
SER
292
n
289
SER
292
A
PRO
293
n
290
PRO
293
A
GLN
294
n
291
GLN
294
A
THR
295
n
292
THR
295
A
ASN
296
n
293
ASN
296
A
LYS
297
n
294
LYS
297
A
GLU
298
n
295
GLU
298
A
LEU
299
n
296
LEU
299
A
GLY
300
n
297
GLY
300
A
ASN
301
n
298
ASN
301
A
PHE
302
n
299
PHE
302
A
PHE
303
n
300
PHE
303
A
ARG
304
n
301
ARG
304
A
SER
305
n
302
SER
305
A
LEU
306
n
303
LEU
306
A
TRP
307
n
304
TRP
307
A
GLY
308
n
305
GLY
308
A
PRO
309
n
306
PRO
309
A
TYR
310
n
307
TYR
310
A
ALA
311
n
308
ALA
311
A
GLY
312
n
309
GLY
312
A
TRP
313
n
310
TRP
313
A
ALA
314
n
311
ALA
314
A
GLN
315
n
312
GLN
315
A
ALA
316
n
313
ALA
316
A
VAL
317
n
314
VAL
317
A
LEU
318
n
315
LEU
318
A
PHE
319
n
316
PHE
319
A
SER
320
n
317
SER
320
A
ALA
321
n
318
ALA
321
A
ASP
322
n
319
ASP
322
A
LEU
323
n
320
LEU
323
A
ARG
324
n
321
ARG
324
A
GLN
325
n
322
GLN
325
A
n
323
326
A
n
324
327
A
author_defined_assembly
3
trimeric
E
HOH
209
G
O
HOH
1_555
E
CA
216
D
CA
CA
1_555
E
HOH
6
G
O
HOH
1_555
52.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
24
C
N
ALA
21
A
O
CYS
75
C
O
CYS
72
A
O
HIS
74
C
O
HIS
71
A
N
THR
67
C
N
THR
64
A
O
GLN
62
C
O
GLN
59
A
N
LEU
59
C
N
LEU
56
A
O
SER
56
C
O
SER
53
A
N
ARG
48
C
N
ARG
45
A
N
LEU
173
C
N
LEU
170
A
O
VAL
176
C
O
VAL
173
1
A
ALA
4
C
ALA
1
1
Y
1
A
MET
5
C
MET
2
1
Y
1
A
ALA
6
C
ALA
3
1
Y
1
A
ASP
7
C
ASP
4
1
Y
1
A
ILE
8
C
ILE
5
1
Y
1
A
GLY
80
C
GLY
77
1
Y
1
A
ASP
81
C
ASP
78
1
Y
1
A
LYS
82
C
LYS
79
1
Y
1
A
SER
326
C
SER
323
1
Y
1
A
ARG
327
C
ARG
324
1
Y
1
D
D
O3'
O3'
DC
DC
15
15
1.98
1_555
11_655
1
A
LEU
22
-102.19
48.41
1
A
CYS
28
-171.31
108.17
1
A
GLN
43
-100.29
-64.63
1
A
LEU
170
-99.76
-80.80
1
A
ASP
174
57.05
-131.17
1
A
GLU
218
-135.02
-33.00
1
A
ARG
324
-68.78
60.19
0.2569
0.2358
2.1
50
2967
31937
29831
93.4
Random
1
THROUGHOUT
2
FOURIER SYNTHESIS
1EBM
Engh & Huber
0.33
0.29
5.0
0.27
0.24
2.1
50
164
3266
13
598
2491
0.0057
1.20
21.6
0.301
0.278
2.18
283
85
2.1
50
1LWW
32073
31837
-3
0.101
1
17.4
5.4
99.3
0.457
2.10
2.18
4.9
3096
5.4
100
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
8-OXOGUANINE DNA GLYCOSYLASE (E.C.3.2.2.-)/DNA Complex
Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-bromoguanine
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
A
THR
19
C
THR
16
HELX_P
A
TRP
23
C
TRP
20
5
1
5
A
ARG
34
C
ARG
31
HELX_P
A
LEU
39
C
LEU
36
1
2
6
A
THR
89
C
THR
86
HELX_P
A
PHE
100
C
PHE
97
1
3
12
A
THR
105
C
THR
102
HELX_P
A
ASP
117
C
ASP
114
1
4
13
A
ASP
117
C
ASP
114
HELX_P
A
GLN
125
C
GLN
122
1
5
9
A
ASP
136
C
ASP
133
HELX_P
A
CYS
146
C
CYS
143
1
6
11
A
ASN
151
C
ASN
148
HELX_P
A
GLY
167
C
GLY
164
1
7
17
A
SER
183
C
SER
180
HELX_P
A
ALA
188
C
ALA
185
1
8
6
A
GLU
191
C
GLU
188
HELX_P
A
LEU
199
C
LEU
196
1
9
9
A
TYR
203
C
TYR
200
HELX_P
A
GLU
218
C
GLU
215
1
10
16
A
GLY
221
C
GLY
218
HELX_P
A
ARG
229
C
ARG
226
1
11
9
A
SER
232
C
SER
229
HELX_P
A
CYS
241
C
CYS
238
1
12
10
A
GLY
247
C
GLY
244
HELX_P
A
LEU
259
C
LEU
256
1
13
13
A
ASP
268
C
ASP
265
HELX_P
A
SER
280
C
SER
277
1
14
13
A
SER
292
C
SER
289
HELX_P
A
GLY
308
C
GLY
305
1
15
17
A
TYR
310
C
TYR
307
HELX_P
A
ARG
324
C
ARG
321
1
16
15
covale
1.452
E
PED
23
B
C1'
PED
8
1_555
A
LYS
249
C
NZ
LYS
246
1_555
covale
1.603
E
DA
22
B
O3'
DA
7
1_555
E
PED
23
B
P
PED
8
1_555
covale
1.611
E
PED
23
B
O3'
PED
8
1_555
E
DG
24
B
P
DG
9
1_555
metalc
3.044
E
CA
216
D
CA
CA
1_555
E
HOH
209
G
O
HOH
1_555
metalc
2.661
E
CA
216
D
CA
CA
1_555
E
HOH
6
G
O
HOH
1_555
hydrog
DG-DC PAIR
D
DG
1
A
N1
DG
1
1_555
E
DC
30
B
O2
DC
15
1_555
hydrog
WATSON-CRICK
D
DG
2
A
N1
DG
2
1_555
E
DC
29
B
N3
DC
14
1_555
hydrog
WATSON-CRICK
D
DG
2
A
N2
DG
2
1_555
E
DC
29
B
O2
DC
14
1_555
hydrog
WATSON-CRICK
D
DG
2
A
O6
DG
2
1_555
E
DC
29
B
N4
DC
14
1_555
hydrog
DT-DA PAIR
D
DT
3
A
O4
DT
3
1_555
E
DA
28
B
N6
DA
13
1_555
hydrog
WATSON-CRICK
D
DA
4
A
N1
DA
4
1_555
E
DT
27
B
N3
DT
12
1_555
hydrog
WATSON-CRICK
D
DA
4
A
N6
DA
4
1_555
E
DT
27
B
O4
DT
12
1_555
hydrog
WATSON-CRICK
D
DG
5
A
N1
DG
5
1_555
E
DC
26
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
D
DG
5
A
N2
DG
5
1_555
E
DC
26
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
D
DG
5
A
O6
DG
5
1_555
E
DC
26
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
D
DA
6
A
N1
DA
6
1_555
E
DT
25
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
D
DA
6
A
N6
DA
6
1_555
E
DT
25
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
D
DC
7
A
N3
DC
7
1_555
E
DG
24
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
D
DC
7
A
N4
DC
7
1_555
E
DG
24
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
D
DC
7
A
O2
DC
7
1_555
E
DG
24
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
D
DT
9
A
N3
DT
9
1_555
E
DA
22
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
D
DT
9
A
O4
DT
9
1_555
E
DA
22
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
D
DG
10
A
N1
DG
10
1_555
E
DC
21
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
D
DG
10
A
N2
DG
10
1_555
E
DC
21
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
D
DG
10
A
O6
DG
10
1_555
E
DC
21
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
D
DG
11
A
N1
DG
11
1_555
E
DC
20
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
D
DG
11
A
N2
DG
11
1_555
E
DC
20
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
D
DG
11
A
O6
DG
11
1_555
E
DC
20
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
D
DA
12
A
N1
DA
12
1_555
E
DT
19
B
N3
DT
4
1_555
hydrog
WATSON-CRICK
D
DA
12
A
N6
DA
12
1_555
E
DT
19
B
O4
DT
4
1_555
hydrog
WATSON-CRICK
D
DC
13
A
N3
DC
13
1_555
E
DG
18
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
D
DC
13
A
N4
DC
13
1_555
E
DG
18
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
D
DC
13
A
O2
DC
13
1_555
E
DG
18
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
D
DG
14
A
N1
DG
14
1_555
E
DC
17
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
D
DG
14
A
N2
DG
14
1_555
E
DC
17
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
D
DG
14
A
O6
DG
14
1_555
E
DC
17
B
N4
DC
2
1_555
HYDROLASE/DNA
DNA REPAIR, DNA GLYCOSYLASE, PROTEIN/DNA, BOROHYDRIDE, COVALENT TRAPPING, PRODUCT-ASSISTED CATALYSIS, REACTION INTERMEDIATE, HYDROLASE-DNA COMPLEX
OGG1_HUMAN
UNP
3
12
O15527
GHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPD
ELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLI
QLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVA
DCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLRQSR
1LWW
PDB
1
1LWW
1LWW
PDB
2
1LWW
12
327
1LWW
12
327
O15527
A
1
9
324
1
15
1LWW
1
15
1LWW
D
2
1
15
16
30
1LWW
16
30
1LWW
E
3
1
15
1
CLONING ARTIFACT
ALA
4
1LWW
A
O15527
UNP
1
1
CLONING ARTIFACT
MET
5
1LWW
A
O15527
UNP
2
1
CLONING ARTIFACT
ALA
6
1LWW
A
O15527
UNP
3
1
CLONING ARTIFACT
ASP
7
1LWW
A
O15527
UNP
4
1
CLONING ARTIFACT
ILE
8
1LWW
A
O15527
UNP
5
1
CLONING ARTIFACT
GLY
9
1LWW
A
O15527
UNP
6
1
CLONING ARTIFACT
SER
10
1LWW
A
O15527
UNP
7
1
CLONING ARTIFACT
GLU
11
1LWW
A
O15527
UNP
8
5
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ALA
24
C
ALA
21
A
PRO
27
C
PRO
24
A
GLN
72
C
GLN
69
A
TYR
78
C
TYR
75
A
GLN
62
C
GLN
59
A
GLN
68
C
GLN
65
A
HIS
54
C
HIS
51
A
LEU
59
C
LEU
56
A
ARG
48
C
ARG
45
A
SER
51
C
SER
48
A
ARG
169
C
ARG
166
A
LEU
173
C
LEU
170
A
VAL
176
C
VAL
173
A
HIS
179
C
HIS
176
BINDING SITE FOR RESIDUE CA E 216
Software
2
BINDING SITE FOR RESIDUE BRG A 328
Software
12
E
HOH
6
G
HOH
2
1_555
E
HOH
209
G
HOH
2
1_555
A
GLY
42
C
GLY
39
12
1_555
A
PHE
45
C
PHE
42
12
1_555
A
SER
147
C
SER
144
12
1_555
A
LYS
249
C
LYS
246
12
1_555
A
PRO
266
C
PRO
263
12
1_555
A
ASP
268
C
ASP
265
12
1_555
A
MET
271
C
MET
268
12
1_555
A
GLN
315
C
GLN
312
12
1_555
A
PHE
319
C
PHE
316
12
1_555
A
HOH
405
H
HOH
12
1_555
A
HOH
424
H
HOH
12
1_555
E
PED
23
B
PED
8
12
1_555
179
P 65 2 2