1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Sam, M.D.
Papagiannis, C.
Connolly, K.M.
Corselli, L.
Iwahara, J.
Lee, J.
Phillips, M.
Wojciak, J.M.
Johnson, R.C.
Clubb, R.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
324
791
805
10.1016/S0022-2836(02)01150-6
12460578
Regulation of directionality in bacteriophage lambda site-specific recombination: structure of the Xis protein
2002
10.2210/pdb1lx8/pdb
pdb_00001lx8
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
6793.799
Excisionase
DNA Binding Domain
C28S
1
man
polymer
Xis
no
no
MYLTLQEWNARQRRPRSLETVRRWVRESRIFPPPVKDGREYLFHESAVKVDLNRP
MYLTLQEWNARQRRPRSLETVRRWVRESRIFPPPVKDGREYLFHESAVKVDLNRP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lambda-like viruses
Escherichia
sample
xis
10710
Enterobacteria phage lambda
562
Escherichia coli
RJ3386 (BL21-DE3)
Plasmid
pBAD33
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-06-10
1
1
2008-04-28
1
2
2011-07-13
1
3
2021-10-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2002-06-04
REL
structures with the lowest energy
200
20
3D_15N-separated_NOESY
HNCA-J
4D_13C/15N-separated_NOESY
HNHA
100mM NaCl
5.0
ambient
298
K
hybrid distance geometry and simulated annealing calculations.
1
lowest energy
1mM Xis, 15N/13C labeled
50mM NaOAc, pH5.0
100mM NaCl
7% D2O, 93% H2O
Brunger, 1993
processing
X-PLOR
3.1
Bruker
collection
XwinNMR
2.6
Delaglio, 1995
processing
NMRPipe
sgi6x
Johnson and Blevins, 1994
data analysis
NMRView
4.1.3
Brunger
refinement
X-PLOR
3.1
600
Bruker
DRX
500
Bruker
DRX
MET
1
n
1
MET
1
A
TYR
2
n
2
TYR
2
A
LEU
3
n
3
LEU
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
GLN
6
n
6
GLN
6
A
GLU
7
n
7
GLU
7
A
TRP
8
n
8
TRP
8
A
ASN
9
n
9
ASN
9
A
ALA
10
n
10
ALA
10
A
ARG
11
n
11
ARG
11
A
GLN
12
n
12
GLN
12
A
ARG
13
n
13
ARG
13
A
ARG
14
n
14
ARG
14
A
PRO
15
n
15
PRO
15
A
ARG
16
n
16
ARG
16
A
SER
17
n
17
SER
17
A
LEU
18
n
18
LEU
18
A
GLU
19
n
19
GLU
19
A
THR
20
n
20
THR
20
A
VAL
21
n
21
VAL
21
A
ARG
22
n
22
ARG
22
A
ARG
23
n
23
ARG
23
A
TRP
24
n
24
TRP
24
A
VAL
25
n
25
VAL
25
A
ARG
26
n
26
ARG
26
A
GLU
27
n
27
GLU
27
A
SER
28
n
28
SER
28
A
ARG
29
n
29
ARG
29
A
ILE
30
n
30
ILE
30
A
PHE
31
n
31
PHE
31
A
PRO
32
n
32
PRO
32
A
PRO
33
n
33
PRO
33
A
PRO
34
n
34
PRO
34
A
VAL
35
n
35
VAL
35
A
LYS
36
n
36
LYS
36
A
ASP
37
n
37
ASP
37
A
GLY
38
n
38
GLY
38
A
ARG
39
n
39
ARG
39
A
GLU
40
n
40
GLU
40
A
TYR
41
n
41
TYR
41
A
LEU
42
n
42
LEU
42
A
PHE
43
n
43
PHE
43
A
HIS
44
n
44
HIS
44
A
GLU
45
n
45
GLU
45
A
SER
46
n
46
SER
46
A
ALA
47
n
47
ALA
47
A
VAL
48
n
48
VAL
48
A
LYS
49
n
49
LYS
49
A
VAL
50
n
50
VAL
50
A
ASP
51
n
51
ASP
51
A
LEU
52
n
52
LEU
52
A
ASN
53
n
53
ASN
53
A
ARG
54
n
54
ARG
54
A
PRO
55
n
55
PRO
55
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
31
A
N
PHE
31
A
O
VAL
48
A
O
VAL
48
A
N
VAL
35
A
N
VAL
35
A
O
LEU
42
A
O
LEU
42
1
A
A
O
H
ASP
ARG
37
39
1.59
2
A
A
O
H
THR
TRP
4
8
1.54
2
A
A
O
H
ASP
ARG
37
39
1.55
3
A
A
O
H
ASP
ARG
37
39
1.57
5
A
A
HD1
H
HIS
GLU
44
45
1.34
5
A
A
O
H
ASP
ARG
37
39
1.52
5
A
A
O
H
HIS
ALA
44
47
1.58
5
A
A
O
H
LYS
GLY
36
38
1.60
7
A
A
O
H
THR
TRP
4
8
1.48
8
A
A
HD1
H
HIS
GLU
44
45
1.27
8
A
A
O
H
THR
TRP
4
8
1.46
8
A
A
O
H
HIS
ALA
44
47
1.50
9
A
A
O
H
THR
TRP
4
8
1.52
9
A
A
O
H
ASP
ARG
37
39
1.55
10
A
A
HD1
H
HIS
GLU
44
45
1.28
10
A
A
O
H
ASP
ARG
37
39
1.54
10
A
A
O
H
THR
TRP
4
8
1.55
10
A
A
O
H
HIS
ALA
44
47
1.57
11
A
A
O
H
SER
THR
17
20
1.58
11
A
A
O
H
THR
TRP
4
8
1.58
13
A
A
O
H
THR
TRP
4
8
1.46
14
A
A
O
H
THR
TRP
4
8
1.52
14
A
A
OE1
HZ1
GLN
LYS
12
49
1.57
15
A
A
HH
H
TYR
PHE
2
43
1.35
15
A
A
O
H
HIS
ALA
44
47
1.60
15
A
A
O
H
VAL
SER
25
28
1.60
16
A
A
O
H
ASP
ARG
37
39
1.59
17
A
A
O
H
ASP
ARG
37
39
1.53
17
A
A
O
HE
GLY
ARG
38
39
1.58
17
A
A
O
H
THR
TRP
4
8
1.60
18
A
A
O
H
ASP
ARG
37
39
1.48
18
A
A
O
H
THR
TRP
4
8
1.59
19
A
A
O
H
ASP
ARG
37
39
1.55
19
A
A
O
H
THR
TRP
4
8
1.59
19
A
A
O
H
HIS
ALA
44
47
1.60
20
A
A
O
H
THR
TRP
4
8
1.59
1
A
TYR
2
-85.26
-154.50
1
A
PRO
33
-41.82
157.58
1
A
ASP
37
-65.60
66.25
1
A
ARG
39
-145.06
-25.07
1
A
ASP
51
-102.20
-92.32
1
A
LEU
52
-132.95
-76.46
1
A
ASN
53
-168.94
62.34
1
A
ARG
54
-160.07
71.69
2
A
ALA
10
-60.49
0.18
2
A
PRO
15
-83.88
-157.36
2
A
ARG
16
-148.05
-135.61
2
A
ASP
37
-65.61
65.62
2
A
HIS
44
-40.48
152.97
2
A
SER
46
-151.46
25.32
2
A
ASP
51
-104.64
-100.41
2
A
ARG
54
53.85
77.56
3
A
ARG
14
-151.74
68.49
3
A
ASP
37
-65.43
66.15
3
A
ARG
39
-145.96
-26.93
3
A
GLU
45
-62.37
0.41
3
A
ASP
51
-153.21
-120.36
3
A
LEU
52
179.53
28.33
4
A
TYR
2
-171.93
137.44
4
A
ARG
14
-151.67
77.47
4
A
ARG
16
-150.50
-145.76
4
A
SER
28
74.06
41.18
4
A
PHE
31
-170.59
129.36
4
A
ASP
37
-65.84
66.39
4
A
ARG
39
-145.21
-29.10
4
A
HIS
44
-43.57
167.75
4
A
GLU
45
-81.44
30.27
4
A
SER
46
-144.79
13.78
4
A
ASP
51
-151.67
-101.39
4
A
LEU
52
-132.46
-85.50
4
A
ASN
53
-175.96
-46.60
4
A
ARG
54
-45.80
152.74
5
A
GLN
6
-44.83
-73.11
5
A
ARG
16
-150.71
-133.04
5
A
ASP
37
-65.23
65.84
5
A
ARG
39
-142.34
-29.45
5
A
ASP
51
-121.61
-79.57
5
A
LEU
52
-130.88
-85.44
6
A
ALA
10
-59.70
0.92
6
A
PRO
33
-44.77
157.39
6
A
ASP
37
-64.54
67.34
6
A
ARG
39
-146.06
-28.18
6
A
HIS
44
-51.72
-99.67
6
A
GLU
45
-156.95
-37.17
6
A
SER
46
-68.23
1.19
6
A
ASP
51
-159.54
-109.87
6
A
LEU
52
-171.75
-31.99
6
A
ASN
53
-85.76
-76.40
7
A
TYR
2
-176.74
139.23
7
A
ALA
10
-59.94
-8.82
7
A
PRO
15
-82.13
-159.12
7
A
ARG
16
-151.11
-157.33
7
A
ASP
37
-64.97
67.41
7
A
ARG
39
-143.05
-24.13
7
A
ASP
51
-99.21
-105.79
7
A
LEU
52
-76.40
-70.57
7
A
ASN
53
-153.14
-83.31
8
A
TYR
2
-174.30
118.81
8
A
LEU
5
-43.16
-70.93
8
A
PRO
33
-40.70
155.21
8
A
ASP
37
-64.67
66.35
8
A
ARG
39
-146.37
-25.46
8
A
ASP
51
-175.23
-31.70
8
A
LEU
52
-68.71
14.63
8
A
ASN
53
-56.47
-5.51
8
A
ARG
54
54.19
73.23
9
A
TYR
2
-64.83
-156.82
9
A
ARG
14
-151.11
82.56
9
A
PRO
34
-39.77
168.18
9
A
ASP
37
-65.21
67.30
9
A
ARG
39
-147.18
27.20
9
A
GLU
45
-51.08
-9.46
9
A
ASP
51
-81.49
-107.24
9
A
LEU
52
-150.34
61.07
9
A
ARG
54
61.45
130.75
10
A
TYR
2
-155.28
-153.50
10
A
ALA
10
-57.68
-6.68
10
A
ARG
16
-151.00
-155.21
10
A
ASP
37
-66.49
65.85
10
A
ARG
39
-146.53
-24.85
10
A
ASP
51
-165.82
-37.66
10
A
ASN
53
-162.84
-33.81
11
A
TYR
2
-68.81
-167.12
11
A
GLN
6
-46.44
-70.24
11
A
ARG
14
-151.07
72.05
11
A
GLU
27
-78.33
26.32
11
A
PRO
33
-47.33
157.44
11
A
ASP
37
-65.37
65.88
11
A
ARG
39
-136.39
-32.23
11
A
HIS
44
-49.28
172.82
11
A
ASP
51
-73.08
-107.88
11
A
LEU
52
43.80
20.45
12
A
TYR
2
-88.34
-150.98
12
A
ALA
10
-57.40
-5.91
12
A
PRO
15
-79.91
-166.27
12
A
PRO
33
-42.64
154.09
12
A
ASP
37
-65.75
66.11
12
A
ARG
39
-146.46
-23.71
12
A
GLU
45
-68.81
12.14
12
A
ASP
51
-141.38
-110.91
12
A
LEU
52
-86.71
-77.78
12
A
ASN
53
53.16
10.14
12
A
ARG
54
-165.55
62.29
13
A
TYR
2
-170.41
134.27
13
A
ASP
37
-64.52
66.26
13
A
ARG
39
-146.77
-26.38
13
A
HIS
44
-59.50
-139.99
13
A
SER
46
-166.79
74.64
13
A
ALA
47
-49.85
-177.77
13
A
ASP
51
-167.14
-35.47
13
A
ASN
53
-158.58
35.74
13
A
ARG
54
59.80
149.06
14
A
ALA
10
-59.23
-2.50
14
A
ARG
14
-151.42
79.40
14
A
SER
17
-46.01
159.28
14
A
PRO
33
-41.55
154.77
14
A
ASP
37
-66.17
65.70
14
A
HIS
44
-51.12
-101.78
14
A
GLU
45
-152.61
-44.50
14
A
SER
46
-69.20
12.68
14
A
ASP
51
-137.77
-87.42
15
A
TYR
2
-49.41
162.00
15
A
ARG
14
-150.49
64.79
15
A
PRO
34
-42.02
171.88
15
A
ASP
37
-62.69
72.54
15
A
ARG
39
-148.35
20.35
15
A
SER
46
-69.51
0.80
15
A
ASP
51
-161.92
-37.65
16
A
TYR
2
-82.13
-152.47
16
A
GLN
6
-43.65
-71.54
16
A
ALA
10
-59.83
-8.40
16
A
ARG
14
-150.07
65.68
16
A
ARG
16
-152.83
-129.23
16
A
GLU
27
-79.09
21.03
16
A
ASP
37
-64.82
66.33
16
A
ARG
39
-146.24
-27.06
16
A
ASP
51
-105.93
-111.44
16
A
LEU
52
-146.82
41.96
17
A
ASP
37
-65.62
65.33
17
A
ARG
39
-134.18
-32.68
17
A
GLU
45
-73.73
30.01
17
A
ASP
51
-125.86
-86.16
17
A
LEU
52
-141.54
35.11
17
A
ASN
53
-66.86
7.95
18
A
TYR
2
-92.08
-154.34
18
A
ALA
10
-59.20
-2.04
18
A
ARG
16
-155.57
-159.57
18
A
ASP
37
-68.67
64.37
18
A
ARG
39
-145.59
-28.87
18
A
GLU
45
-51.31
-9.79
18
A
ASP
51
-155.67
-64.55
18
A
ASN
53
-69.00
9.84
18
A
ARG
54
54.46
74.10
19
A
ARG
14
-150.63
63.45
19
A
ARG
16
-143.09
-157.54
19
A
ASP
37
-64.90
66.23
19
A
ARG
39
-146.06
-29.73
19
A
ASP
51
-154.58
-95.53
19
A
ASN
53
-78.54
24.00
20
A
TYR
2
-175.79
130.86
20
A
GLN
6
-44.97
-71.40
20
A
ARG
14
-153.42
74.61
20
A
ARG
16
-151.98
-130.61
20
A
PHE
31
-170.64
138.31
20
A
ASP
37
-65.63
66.05
20
A
ARG
39
-146.20
-24.40
20
A
ASP
51
-165.15
-107.95
20
A
ASN
53
-150.80
-44.67
20
A
ARG
54
179.61
-49.39
Regulation of directionality in bacteriophage lambda site-specific recombination: structure of the Xis protein
1
N
N
A
THR
4
A
THR
4
HELX_P
A
ARG
11
A
ARG
11
1
1
8
A
SER
17
A
SER
17
HELX_P
A
GLU
27
A
GLU
27
1
2
11
VIRAL PROTEIN
DNA architectural protein, 'winged'-helix protein, phage excision, site-specific DNA recombination, Viral protein
A
PHE
31
A
PHE
31
1
A
PRO
32
A
PRO
32
-0.71
A
PHE
31
A
PHE
31
2
A
PRO
32
A
PRO
32
-0.51
A
PHE
31
A
PHE
31
3
A
PRO
32
A
PRO
32
-0.70
A
PHE
31
A
PHE
31
4
A
PRO
32
A
PRO
32
-1.16
A
PHE
31
A
PHE
31
5
A
PRO
32
A
PRO
32
-1.28
A
PHE
31
A
PHE
31
6
A
PRO
32
A
PRO
32
-1.01
A
PHE
31
A
PHE
31
7
A
PRO
32
A
PRO
32
-0.74
A
PHE
31
A
PHE
31
8
A
PRO
32
A
PRO
32
-0.35
A
PHE
31
A
PHE
31
9
A
PRO
32
A
PRO
32
-0.14
A
PHE
31
A
PHE
31
10
A
PRO
32
A
PRO
32
-0.74
A
PHE
31
A
PHE
31
11
A
PRO
32
A
PRO
32
-0.99
A
PHE
31
A
PHE
31
12
A
PRO
32
A
PRO
32
-0.67
A
PHE
31
A
PHE
31
13
A
PRO
32
A
PRO
32
-0.68
A
PHE
31
A
PHE
31
14
A
PRO
32
A
PRO
32
-0.73
A
PHE
31
A
PHE
31
15
A
PRO
32
A
PRO
32
-1.07
A
PHE
31
A
PHE
31
16
A
PRO
32
A
PRO
32
-1.15
A
PHE
31
A
PHE
31
17
A
PRO
32
A
PRO
32
-1.12
A
PHE
31
A
PHE
31
18
A
PRO
32
A
PRO
32
-0.53
A
PHE
31
A
PHE
31
19
A
PRO
32
A
PRO
32
-0.79
A
PHE
31
A
PHE
31
20
A
PRO
32
A
PRO
32
-0.92
VXIS_LAMBD
UNP
1
1
P03699
MYLTLQEWNARQRRPRSLETVRRWVRECRIFPPPVKDGREYLFHESAVKVDLNRP
1
55
1LX8
1
55
P03699
A
1
1
55
1
CYS
engineered mutation
SER
28
1LX8
A
P03699
UNP
28
28
2
2
anti-parallel
anti-parallel
A
ILE
30
A
ILE
30
A
PHE
31
A
PHE
31
A
VAL
48
A
VAL
48
A
LYS
49
A
LYS
49
A
VAL
35
A
VAL
35
A
ASP
37
A
ASP
37
A
GLU
40
A
GLU
40
A
LEU
42
A
LEU
42