1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Sam, M.D. Papagiannis, C. Connolly, K.M. Corselli, L. Iwahara, J. Lee, J. Phillips, M. Wojciak, J.M. Johnson, R.C. Clubb, R.T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 324 791 805 10.1016/S0022-2836(02)01150-6 12460578 Regulation of directionality in bacteriophage lambda site-specific recombination: structure of the Xis protein 2002 10.2210/pdb1lx8/pdb pdb_00001lx8 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 6793.799 Excisionase DNA Binding Domain C28S 1 man polymer Xis no no MYLTLQEWNARQRRPRSLETVRRWVRESRIFPPPVKDGREYLFHESAVKVDLNRP MYLTLQEWNARQRRPRSLETVRRWVRESRIFPPPVKDGREYLFHESAVKVDLNRP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lambda-like viruses Escherichia sample xis 10710 Enterobacteria phage lambda 562 Escherichia coli RJ3386 (BL21-DE3) Plasmid pBAD33 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-06-10 1 1 2008-04-28 1 2 2011-07-13 1 3 2021-10-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details RCSB Y RCSB 2002-06-04 REL structures with the lowest energy 200 20 3D_15N-separated_NOESY HNCA-J 4D_13C/15N-separated_NOESY HNHA 100mM NaCl 5.0 ambient 298 K hybrid distance geometry and simulated annealing calculations. 1 lowest energy 1mM Xis, 15N/13C labeled 50mM NaOAc, pH5.0 100mM NaCl 7% D2O, 93% H2O Brunger, 1993 processing X-PLOR 3.1 Bruker collection XwinNMR 2.6 Delaglio, 1995 processing NMRPipe sgi6x Johnson and Blevins, 1994 data analysis NMRView 4.1.3 Brunger refinement X-PLOR 3.1 600 Bruker DRX 500 Bruker DRX MET 1 n 1 MET 1 A TYR 2 n 2 TYR 2 A LEU 3 n 3 LEU 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A GLN 6 n 6 GLN 6 A GLU 7 n 7 GLU 7 A TRP 8 n 8 TRP 8 A ASN 9 n 9 ASN 9 A ALA 10 n 10 ALA 10 A ARG 11 n 11 ARG 11 A GLN 12 n 12 GLN 12 A ARG 13 n 13 ARG 13 A ARG 14 n 14 ARG 14 A PRO 15 n 15 PRO 15 A ARG 16 n 16 ARG 16 A SER 17 n 17 SER 17 A LEU 18 n 18 LEU 18 A GLU 19 n 19 GLU 19 A THR 20 n 20 THR 20 A VAL 21 n 21 VAL 21 A ARG 22 n 22 ARG 22 A ARG 23 n 23 ARG 23 A TRP 24 n 24 TRP 24 A VAL 25 n 25 VAL 25 A ARG 26 n 26 ARG 26 A GLU 27 n 27 GLU 27 A SER 28 n 28 SER 28 A ARG 29 n 29 ARG 29 A ILE 30 n 30 ILE 30 A PHE 31 n 31 PHE 31 A PRO 32 n 32 PRO 32 A PRO 33 n 33 PRO 33 A PRO 34 n 34 PRO 34 A VAL 35 n 35 VAL 35 A LYS 36 n 36 LYS 36 A ASP 37 n 37 ASP 37 A GLY 38 n 38 GLY 38 A ARG 39 n 39 ARG 39 A GLU 40 n 40 GLU 40 A TYR 41 n 41 TYR 41 A LEU 42 n 42 LEU 42 A PHE 43 n 43 PHE 43 A HIS 44 n 44 HIS 44 A GLU 45 n 45 GLU 45 A SER 46 n 46 SER 46 A ALA 47 n 47 ALA 47 A VAL 48 n 48 VAL 48 A LYS 49 n 49 LYS 49 A VAL 50 n 50 VAL 50 A ASP 51 n 51 ASP 51 A LEU 52 n 52 LEU 52 A ASN 53 n 53 ASN 53 A ARG 54 n 54 ARG 54 A PRO 55 n 55 PRO 55 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 A N PHE 31 A N PHE 31 A O VAL 48 A O VAL 48 A N VAL 35 A N VAL 35 A O LEU 42 A O LEU 42 1 A A O H ASP ARG 37 39 1.59 2 A A O H THR TRP 4 8 1.54 2 A A O H ASP ARG 37 39 1.55 3 A A O H ASP ARG 37 39 1.57 5 A A HD1 H HIS GLU 44 45 1.34 5 A A O H ASP ARG 37 39 1.52 5 A A O H HIS ALA 44 47 1.58 5 A A O H LYS GLY 36 38 1.60 7 A A O H THR TRP 4 8 1.48 8 A A HD1 H HIS GLU 44 45 1.27 8 A A O H THR TRP 4 8 1.46 8 A A O H HIS ALA 44 47 1.50 9 A A O H THR TRP 4 8 1.52 9 A A O H ASP ARG 37 39 1.55 10 A A HD1 H HIS GLU 44 45 1.28 10 A A O H ASP ARG 37 39 1.54 10 A A O H THR TRP 4 8 1.55 10 A A O H HIS ALA 44 47 1.57 11 A A O H SER THR 17 20 1.58 11 A A O H THR TRP 4 8 1.58 13 A A O H THR TRP 4 8 1.46 14 A A O H THR TRP 4 8 1.52 14 A A OE1 HZ1 GLN LYS 12 49 1.57 15 A A HH H TYR PHE 2 43 1.35 15 A A O H HIS ALA 44 47 1.60 15 A A O H VAL SER 25 28 1.60 16 A A O H ASP ARG 37 39 1.59 17 A A O H ASP ARG 37 39 1.53 17 A A O HE GLY ARG 38 39 1.58 17 A A O H THR TRP 4 8 1.60 18 A A O H ASP ARG 37 39 1.48 18 A A O H THR TRP 4 8 1.59 19 A A O H ASP ARG 37 39 1.55 19 A A O H THR TRP 4 8 1.59 19 A A O H HIS ALA 44 47 1.60 20 A A O H THR TRP 4 8 1.59 1 A TYR 2 -85.26 -154.50 1 A PRO 33 -41.82 157.58 1 A ASP 37 -65.60 66.25 1 A ARG 39 -145.06 -25.07 1 A ASP 51 -102.20 -92.32 1 A LEU 52 -132.95 -76.46 1 A ASN 53 -168.94 62.34 1 A ARG 54 -160.07 71.69 2 A ALA 10 -60.49 0.18 2 A PRO 15 -83.88 -157.36 2 A ARG 16 -148.05 -135.61 2 A ASP 37 -65.61 65.62 2 A HIS 44 -40.48 152.97 2 A SER 46 -151.46 25.32 2 A ASP 51 -104.64 -100.41 2 A ARG 54 53.85 77.56 3 A ARG 14 -151.74 68.49 3 A ASP 37 -65.43 66.15 3 A ARG 39 -145.96 -26.93 3 A GLU 45 -62.37 0.41 3 A ASP 51 -153.21 -120.36 3 A LEU 52 179.53 28.33 4 A TYR 2 -171.93 137.44 4 A ARG 14 -151.67 77.47 4 A ARG 16 -150.50 -145.76 4 A SER 28 74.06 41.18 4 A PHE 31 -170.59 129.36 4 A ASP 37 -65.84 66.39 4 A ARG 39 -145.21 -29.10 4 A HIS 44 -43.57 167.75 4 A GLU 45 -81.44 30.27 4 A SER 46 -144.79 13.78 4 A ASP 51 -151.67 -101.39 4 A LEU 52 -132.46 -85.50 4 A ASN 53 -175.96 -46.60 4 A ARG 54 -45.80 152.74 5 A GLN 6 -44.83 -73.11 5 A ARG 16 -150.71 -133.04 5 A ASP 37 -65.23 65.84 5 A ARG 39 -142.34 -29.45 5 A ASP 51 -121.61 -79.57 5 A LEU 52 -130.88 -85.44 6 A ALA 10 -59.70 0.92 6 A PRO 33 -44.77 157.39 6 A ASP 37 -64.54 67.34 6 A ARG 39 -146.06 -28.18 6 A HIS 44 -51.72 -99.67 6 A GLU 45 -156.95 -37.17 6 A SER 46 -68.23 1.19 6 A ASP 51 -159.54 -109.87 6 A LEU 52 -171.75 -31.99 6 A ASN 53 -85.76 -76.40 7 A TYR 2 -176.74 139.23 7 A ALA 10 -59.94 -8.82 7 A PRO 15 -82.13 -159.12 7 A ARG 16 -151.11 -157.33 7 A ASP 37 -64.97 67.41 7 A ARG 39 -143.05 -24.13 7 A ASP 51 -99.21 -105.79 7 A LEU 52 -76.40 -70.57 7 A ASN 53 -153.14 -83.31 8 A TYR 2 -174.30 118.81 8 A LEU 5 -43.16 -70.93 8 A PRO 33 -40.70 155.21 8 A ASP 37 -64.67 66.35 8 A ARG 39 -146.37 -25.46 8 A ASP 51 -175.23 -31.70 8 A LEU 52 -68.71 14.63 8 A ASN 53 -56.47 -5.51 8 A ARG 54 54.19 73.23 9 A TYR 2 -64.83 -156.82 9 A ARG 14 -151.11 82.56 9 A PRO 34 -39.77 168.18 9 A ASP 37 -65.21 67.30 9 A ARG 39 -147.18 27.20 9 A GLU 45 -51.08 -9.46 9 A ASP 51 -81.49 -107.24 9 A LEU 52 -150.34 61.07 9 A ARG 54 61.45 130.75 10 A TYR 2 -155.28 -153.50 10 A ALA 10 -57.68 -6.68 10 A ARG 16 -151.00 -155.21 10 A ASP 37 -66.49 65.85 10 A ARG 39 -146.53 -24.85 10 A ASP 51 -165.82 -37.66 10 A ASN 53 -162.84 -33.81 11 A TYR 2 -68.81 -167.12 11 A GLN 6 -46.44 -70.24 11 A ARG 14 -151.07 72.05 11 A GLU 27 -78.33 26.32 11 A PRO 33 -47.33 157.44 11 A ASP 37 -65.37 65.88 11 A ARG 39 -136.39 -32.23 11 A HIS 44 -49.28 172.82 11 A ASP 51 -73.08 -107.88 11 A LEU 52 43.80 20.45 12 A TYR 2 -88.34 -150.98 12 A ALA 10 -57.40 -5.91 12 A PRO 15 -79.91 -166.27 12 A PRO 33 -42.64 154.09 12 A ASP 37 -65.75 66.11 12 A ARG 39 -146.46 -23.71 12 A GLU 45 -68.81 12.14 12 A ASP 51 -141.38 -110.91 12 A LEU 52 -86.71 -77.78 12 A ASN 53 53.16 10.14 12 A ARG 54 -165.55 62.29 13 A TYR 2 -170.41 134.27 13 A ASP 37 -64.52 66.26 13 A ARG 39 -146.77 -26.38 13 A HIS 44 -59.50 -139.99 13 A SER 46 -166.79 74.64 13 A ALA 47 -49.85 -177.77 13 A ASP 51 -167.14 -35.47 13 A ASN 53 -158.58 35.74 13 A ARG 54 59.80 149.06 14 A ALA 10 -59.23 -2.50 14 A ARG 14 -151.42 79.40 14 A SER 17 -46.01 159.28 14 A PRO 33 -41.55 154.77 14 A ASP 37 -66.17 65.70 14 A HIS 44 -51.12 -101.78 14 A GLU 45 -152.61 -44.50 14 A SER 46 -69.20 12.68 14 A ASP 51 -137.77 -87.42 15 A TYR 2 -49.41 162.00 15 A ARG 14 -150.49 64.79 15 A PRO 34 -42.02 171.88 15 A ASP 37 -62.69 72.54 15 A ARG 39 -148.35 20.35 15 A SER 46 -69.51 0.80 15 A ASP 51 -161.92 -37.65 16 A TYR 2 -82.13 -152.47 16 A GLN 6 -43.65 -71.54 16 A ALA 10 -59.83 -8.40 16 A ARG 14 -150.07 65.68 16 A ARG 16 -152.83 -129.23 16 A GLU 27 -79.09 21.03 16 A ASP 37 -64.82 66.33 16 A ARG 39 -146.24 -27.06 16 A ASP 51 -105.93 -111.44 16 A LEU 52 -146.82 41.96 17 A ASP 37 -65.62 65.33 17 A ARG 39 -134.18 -32.68 17 A GLU 45 -73.73 30.01 17 A ASP 51 -125.86 -86.16 17 A LEU 52 -141.54 35.11 17 A ASN 53 -66.86 7.95 18 A TYR 2 -92.08 -154.34 18 A ALA 10 -59.20 -2.04 18 A ARG 16 -155.57 -159.57 18 A ASP 37 -68.67 64.37 18 A ARG 39 -145.59 -28.87 18 A GLU 45 -51.31 -9.79 18 A ASP 51 -155.67 -64.55 18 A ASN 53 -69.00 9.84 18 A ARG 54 54.46 74.10 19 A ARG 14 -150.63 63.45 19 A ARG 16 -143.09 -157.54 19 A ASP 37 -64.90 66.23 19 A ARG 39 -146.06 -29.73 19 A ASP 51 -154.58 -95.53 19 A ASN 53 -78.54 24.00 20 A TYR 2 -175.79 130.86 20 A GLN 6 -44.97 -71.40 20 A ARG 14 -153.42 74.61 20 A ARG 16 -151.98 -130.61 20 A PHE 31 -170.64 138.31 20 A ASP 37 -65.63 66.05 20 A ARG 39 -146.20 -24.40 20 A ASP 51 -165.15 -107.95 20 A ASN 53 -150.80 -44.67 20 A ARG 54 179.61 -49.39 Regulation of directionality in bacteriophage lambda site-specific recombination: structure of the Xis protein 1 N N A THR 4 A THR 4 HELX_P A ARG 11 A ARG 11 1 1 8 A SER 17 A SER 17 HELX_P A GLU 27 A GLU 27 1 2 11 VIRAL PROTEIN DNA architectural protein, 'winged'-helix protein, phage excision, site-specific DNA recombination, Viral protein A PHE 31 A PHE 31 1 A PRO 32 A PRO 32 -0.71 A PHE 31 A PHE 31 2 A PRO 32 A PRO 32 -0.51 A PHE 31 A PHE 31 3 A PRO 32 A PRO 32 -0.70 A PHE 31 A PHE 31 4 A PRO 32 A PRO 32 -1.16 A PHE 31 A PHE 31 5 A PRO 32 A PRO 32 -1.28 A PHE 31 A PHE 31 6 A PRO 32 A PRO 32 -1.01 A PHE 31 A PHE 31 7 A PRO 32 A PRO 32 -0.74 A PHE 31 A PHE 31 8 A PRO 32 A PRO 32 -0.35 A PHE 31 A PHE 31 9 A PRO 32 A PRO 32 -0.14 A PHE 31 A PHE 31 10 A PRO 32 A PRO 32 -0.74 A PHE 31 A PHE 31 11 A PRO 32 A PRO 32 -0.99 A PHE 31 A PHE 31 12 A PRO 32 A PRO 32 -0.67 A PHE 31 A PHE 31 13 A PRO 32 A PRO 32 -0.68 A PHE 31 A PHE 31 14 A PRO 32 A PRO 32 -0.73 A PHE 31 A PHE 31 15 A PRO 32 A PRO 32 -1.07 A PHE 31 A PHE 31 16 A PRO 32 A PRO 32 -1.15 A PHE 31 A PHE 31 17 A PRO 32 A PRO 32 -1.12 A PHE 31 A PHE 31 18 A PRO 32 A PRO 32 -0.53 A PHE 31 A PHE 31 19 A PRO 32 A PRO 32 -0.79 A PHE 31 A PHE 31 20 A PRO 32 A PRO 32 -0.92 VXIS_LAMBD UNP 1 1 P03699 MYLTLQEWNARQRRPRSLETVRRWVRECRIFPPPVKDGREYLFHESAVKVDLNRP 1 55 1LX8 1 55 P03699 A 1 1 55 1 CYS engineered mutation SER 28 1LX8 A P03699 UNP 28 28 2 2 anti-parallel anti-parallel A ILE 30 A ILE 30 A PHE 31 A PHE 31 A VAL 48 A VAL 48 A LYS 49 A LYS 49 A VAL 35 A VAL 35 A ASP 37 A ASP 37 A GLU 40 A GLU 40 A LEU 42 A LEU 42