0.019167 0.011066 0.000000 0.000000 0.022133 0.000000 0.000000 0.000000 0.007381 0.00000 0.00000 0.00000 Sanchez, J.F. Hoh, F. Strub, M.P. Aumelas, A. Dumas, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 52.172 52.172 135.483 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 10 1363 1370 10.1016/S0969-2126(02)00859-6 12377122 Structure of the cathelicidin motif of protegrin-3 precursor: structural insights into the activation mechanism of an antimicrobial protein. 2002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 291 1 IMAGE PLATE 2002-01-15 MARRESEARCH graphite SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 11322.741 protegrin-3 precursor residues 30-130 1 man polymer 18.015 water 45 nat water pg-3 no no QALSYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVG TVTLDQIKDPLDITCNEVQGV QALSYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVG TVTLDQIKDPLDITCNEVQGV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n pig Sus Escherichia Escherichia coli sample pg3 9823 Sus scrofa 469008 Escherichia coli BL21(DE3) BL21 (DE3) plasmid pET15B 1 2.35 47.62 VAPOR DIFFUSION, HANGING DROP 3.5 AMMONIUM SULFATE, SODIUM ACETATE, pH 3.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 software repository Initial release Version format compliance Derived calculations Version format compliance Refinement description 1 0 2002-10-09 1 1 2008-04-28 1 2 2011-07-13 1 3 2017-10-11 monomeric form RCSB Y RCSB 2002-06-05 REL REL HOH water HOH 101 2 HOH HOH 131 A HOH 102 2 HOH HOH 132 A HOH 103 2 HOH HOH 133 A HOH 104 2 HOH HOH 134 A HOH 105 2 HOH HOH 135 A HOH 106 2 HOH HOH 136 A HOH 107 2 HOH HOH 137 A HOH 108 2 HOH HOH 138 A HOH 109 2 HOH HOH 139 A HOH 110 2 HOH HOH 140 A HOH 111 2 HOH HOH 141 A HOH 112 2 HOH HOH 142 A HOH 113 2 HOH HOH 143 A HOH 114 2 HOH HOH 144 A HOH 115 2 HOH HOH 145 A HOH 116 2 HOH HOH 146 A HOH 117 2 HOH HOH 147 A HOH 118 2 HOH HOH 148 A HOH 119 2 HOH HOH 149 A HOH 120 2 HOH HOH 150 A HOH 121 2 HOH HOH 151 A HOH 122 2 HOH HOH 152 A HOH 123 2 HOH HOH 153 A HOH 124 2 HOH HOH 154 A HOH 125 2 HOH HOH 155 A HOH 126 2 HOH HOH 156 A HOH 127 2 HOH HOH 157 A HOH 128 2 HOH HOH 158 A HOH 129 2 HOH HOH 159 A HOH 130 2 HOH HOH 160 A HOH 131 2 HOH HOH 161 A HOH 132 2 HOH HOH 162 A HOH 133 2 HOH HOH 163 A HOH 134 2 HOH HOH 164 A HOH 135 2 HOH HOH 165 A HOH 136 2 HOH HOH 166 A HOH 137 2 HOH HOH 167 A HOH 138 2 HOH HOH 168 A HOH 139 2 HOH HOH 169 A HOH 140 2 HOH HOH 170 A HOH 141 2 HOH HOH 171 A HOH 142 2 HOH HOH 172 A HOH 143 2 HOH HOH 173 A HOH 144 2 HOH HOH 174 A HOH 145 2 HOH HOH 175 A n 1 30 A ALA 31 n 2 ALA 31 A LEU 32 n 3 LEU 32 A SER 33 n 4 SER 33 A TYR 34 n 5 TYR 34 A ARG 35 n 6 ARG 35 A GLU 36 n 7 GLU 36 A ALA 37 n 8 ALA 37 A VAL 38 n 9 VAL 38 A LEU 39 n 10 LEU 39 A ARG 40 n 11 ARG 40 A ALA 41 n 12 ALA 41 A VAL 42 n 13 VAL 42 A ASP 43 n 14 ASP 43 A ARG 44 n 15 ARG 44 A LEU 45 n 16 LEU 45 A ASN 46 n 17 ASN 46 A GLU 47 n 18 GLU 47 A GLN 48 n 19 GLN 48 A SER 49 n 20 SER 49 A SER 50 n 21 SER 50 A GLU 51 n 22 GLU 51 A ALA 52 n 23 ALA 52 A ASN 53 n 24 ASN 53 A LEU 54 n 25 LEU 54 A TYR 55 n 26 TYR 55 A ARG 56 n 27 ARG 56 A LEU 57 n 28 LEU 57 A LEU 58 n 29 LEU 58 A GLU 59 n 30 GLU 59 A LEU 60 n 31 LEU 60 A ASP 61 n 32 ASP 61 A GLN 62 n 33 GLN 62 A PRO 63 n 34 PRO 63 A PRO 64 n 35 PRO 64 A LYS 65 n 36 LYS 65 A ALA 66 n 37 ALA 66 A ASP 67 n 38 ASP 67 A GLU 68 n 39 GLU 68 A ASP 69 n 40 ASP 69 A PRO 70 n 41 PRO 70 A GLY 71 n 42 GLY 71 A THR 72 n 43 THR 72 A PRO 73 n 44 PRO 73 A LYS 74 n 45 LYS 74 A PRO 75 n 46 PRO 75 A VAL 76 n 47 VAL 76 A SER 77 n 48 SER 77 A PHE 78 n 49 PHE 78 A THR 79 n 50 THR 79 A VAL 80 n 51 VAL 80 A LYS 81 n 52 LYS 81 A GLU 82 n 53 GLU 82 A THR 83 n 54 THR 83 A VAL 84 n 55 VAL 84 A CYS 85 n 56 CYS 85 A PRO 86 n 57 PRO 86 A ARG 87 n 58 ARG 87 A PRO 88 n 59 PRO 88 A THR 89 n 60 THR 89 A ARG 90 n 61 ARG 90 A GLN 91 n 62 GLN 91 A PRO 92 n 63 PRO 92 A PRO 93 n 64 PRO 93 A GLU 94 n 65 GLU 94 A LEU 95 n 66 LEU 95 A CYS 96 n 67 CYS 96 A ASP 97 n 68 ASP 97 A PHE 98 n 69 PHE 98 A LYS 99 n 70 LYS 99 A GLU 100 n 71 GLU 100 A ASN 101 n 72 ASN 101 A GLY 102 n 73 GLY 102 A ARG 103 n 74 ARG 103 A VAL 104 n 75 VAL 104 A LYS 105 n 76 LYS 105 A GLN 106 n 77 GLN 106 A CYS 107 n 78 CYS 107 A VAL 108 n 79 VAL 108 A GLY 109 n 80 GLY 109 A THR 110 n 81 THR 110 A VAL 111 n 82 VAL 111 A THR 112 n 83 THR 112 A LEU 113 n 84 LEU 113 A ASP 114 n 85 ASP 114 A n 86 115 A n 87 116 A n 88 117 A n 89 118 A n 90 119 A n 91 120 A ASP 121 n 92 ASP 121 A ILE 122 n 93 ILE 122 A THR 123 n 94 THR 123 A CYS 124 n 95 CYS 124 A ASN 125 n 96 ASN 125 A GLU 126 n 97 GLU 126 A VAL 127 n 98 VAL 127 A GLN 128 n 99 GLN 128 A n 100 129 A n 101 130 A author_and_software_defined_assembly PISA,PQS 2 dimeric 4890 -32 12850 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 12_564 x,x-y+1,-z-1/6 crystal symmetry operation -26.0860000000 45.1822773662 -22.5805000000 A N PHE 78 A N PHE 49 A O CYS 107 A O CYS 78 A N GLN 106 A N GLN 77 A O ASN 125 A O ASN 96 1 A GLN 30 A GLN 1 1 Y 1 A GLN 115 A GLN 86 1 Y 1 A ILE 116 A ILE 87 1 Y 1 A LYS 117 A LYS 88 1 Y 1 A ASP 118 A ASP 89 1 Y 1 A PRO 119 A PRO 90 1 Y 1 A LEU 120 A LEU 91 1 Y 1 A GLY 129 A GLY 100 1 Y 1 A VAL 130 A VAL 101 1 Y 1 A PRO 63 -52.26 106.70 1 A ASP 69 71.98 57.65 1 A PRO 70 -72.76 -125.66 1 A GLU 100 -38.79 -82.19 1 A ASN 101 -103.30 57.49 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP 33.6 1.32 7.71 0.00 1.32 0.00 -2.65 0.279 0.014 0.215 0.21501 0.21501 2.50 27.10 386 3922 3922 9.8 93.3 RANDOM 1799954.70 1799954.70 1 RESTRAINED THROUGHOUT 0.0 0.0 FOURIER SYNTHESIS PDB ENTRY 1KWI Engh & Huber FLAT MODEL 104.394 0.429523 0.36 0.28 5.00 0.26 0.23 2.50 27.10 45 767 0 0 722 0.008 1.4 24.0 1.03 4.93 1.50 8.12 2.00 5.06 2.00 8.05 2.50 0.268 0.033 0.231 2.66 67 541 541 6 11.0 91.3 43.8 2.5 27.1 1LXE 3922 3922 0. 0. 0.092 0.092 1 18.5 91.3 0.241 2.5 2.66 4.6 541 0.241 1 91.3 data reduction DENZO data reduction AUTOMAR refinement CNS phasing CNS PROTEGRIN 3 PRECURSOR CRYSTAL STRUCTURE OF THE CATHELICIDIN MOTIF OF PROTEGRINS 1 N N 2 N N The second part of the biological assembly is generated by the two fold axis: Rotation : 0.5000 0.8660 0.0 0.8660 -0.5000 0.0 0.0 0.0 -1.0 Translation : -26.086 45.183 -22.580 A ALA 31 A ALA 2 HELX_P A GLN 48 A GLN 19 1 1 18 A PRO 92 A PRO 63 HELX_P A CYS 96 A CYS 67 5 2 5 disulf 2.033 A CYS 85 A SG CYS 56 1_555 A CYS 96 A SG CYS 67 1_555 disulf 2.035 A CYS 107 A SG CYS 78 1_555 A CYS 124 A SG CYS 95 1_555 ANTIMICROBIAL PROTEIN PROTEGRIN, CATHELICIDIN MOTIF, DISULFIDE, domain swapping, ANTIMICROBIAL PROTEIN PG3_PIG UNP 1 30 P32196 QALSYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVG TVTLDQIKDPLDITCNEVQGV 30 130 1LXE 30 130 P32196 A 1 1 101 3 anti-parallel anti-parallel A LYS 74 A LYS 45 A LYS 81 A LYS 52 A VAL 104 A VAL 75 A VAL 111 A VAL 82 A ILE 122 A ILE 93 A GLU 126 A GLU 97 179 P 65 2 2