0.019167
0.011066
0.000000
0.000000
0.022133
0.000000
0.000000
0.000000
0.007381
0.00000
0.00000
0.00000
Sanchez, J.F.
Hoh, F.
Strub, M.P.
Aumelas, A.
Dumas, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
52.172
52.172
135.483
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
10
1363
1370
10.1016/S0969-2126(02)00859-6
12377122
Structure of the cathelicidin motif of protegrin-3 precursor: structural insights into the activation mechanism of an antimicrobial protein.
2002
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
291
1
IMAGE PLATE
2002-01-15
MARRESEARCH
graphite
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
11322.741
protegrin-3 precursor
residues 30-130
1
man
polymer
18.015
water
45
nat
water
pg-3
no
no
QALSYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVG
TVTLDQIKDPLDITCNEVQGV
QALSYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVG
TVTLDQIKDPLDITCNEVQGV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
pig
Sus
Escherichia
Escherichia coli
sample
pg3
9823
Sus scrofa
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
plasmid
pET15B
1
2.35
47.62
VAPOR DIFFUSION, HANGING DROP
3.5
AMMONIUM SULFATE, SODIUM ACETATE, pH 3.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
software
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Refinement description
1
0
2002-10-09
1
1
2008-04-28
1
2
2011-07-13
1
3
2017-10-11
monomeric form
RCSB
Y
RCSB
2002-06-05
REL
REL
HOH
water
HOH
101
2
HOH
HOH
131
A
HOH
102
2
HOH
HOH
132
A
HOH
103
2
HOH
HOH
133
A
HOH
104
2
HOH
HOH
134
A
HOH
105
2
HOH
HOH
135
A
HOH
106
2
HOH
HOH
136
A
HOH
107
2
HOH
HOH
137
A
HOH
108
2
HOH
HOH
138
A
HOH
109
2
HOH
HOH
139
A
HOH
110
2
HOH
HOH
140
A
HOH
111
2
HOH
HOH
141
A
HOH
112
2
HOH
HOH
142
A
HOH
113
2
HOH
HOH
143
A
HOH
114
2
HOH
HOH
144
A
HOH
115
2
HOH
HOH
145
A
HOH
116
2
HOH
HOH
146
A
HOH
117
2
HOH
HOH
147
A
HOH
118
2
HOH
HOH
148
A
HOH
119
2
HOH
HOH
149
A
HOH
120
2
HOH
HOH
150
A
HOH
121
2
HOH
HOH
151
A
HOH
122
2
HOH
HOH
152
A
HOH
123
2
HOH
HOH
153
A
HOH
124
2
HOH
HOH
154
A
HOH
125
2
HOH
HOH
155
A
HOH
126
2
HOH
HOH
156
A
HOH
127
2
HOH
HOH
157
A
HOH
128
2
HOH
HOH
158
A
HOH
129
2
HOH
HOH
159
A
HOH
130
2
HOH
HOH
160
A
HOH
131
2
HOH
HOH
161
A
HOH
132
2
HOH
HOH
162
A
HOH
133
2
HOH
HOH
163
A
HOH
134
2
HOH
HOH
164
A
HOH
135
2
HOH
HOH
165
A
HOH
136
2
HOH
HOH
166
A
HOH
137
2
HOH
HOH
167
A
HOH
138
2
HOH
HOH
168
A
HOH
139
2
HOH
HOH
169
A
HOH
140
2
HOH
HOH
170
A
HOH
141
2
HOH
HOH
171
A
HOH
142
2
HOH
HOH
172
A
HOH
143
2
HOH
HOH
173
A
HOH
144
2
HOH
HOH
174
A
HOH
145
2
HOH
HOH
175
A
n
1
30
A
ALA
31
n
2
ALA
31
A
LEU
32
n
3
LEU
32
A
SER
33
n
4
SER
33
A
TYR
34
n
5
TYR
34
A
ARG
35
n
6
ARG
35
A
GLU
36
n
7
GLU
36
A
ALA
37
n
8
ALA
37
A
VAL
38
n
9
VAL
38
A
LEU
39
n
10
LEU
39
A
ARG
40
n
11
ARG
40
A
ALA
41
n
12
ALA
41
A
VAL
42
n
13
VAL
42
A
ASP
43
n
14
ASP
43
A
ARG
44
n
15
ARG
44
A
LEU
45
n
16
LEU
45
A
ASN
46
n
17
ASN
46
A
GLU
47
n
18
GLU
47
A
GLN
48
n
19
GLN
48
A
SER
49
n
20
SER
49
A
SER
50
n
21
SER
50
A
GLU
51
n
22
GLU
51
A
ALA
52
n
23
ALA
52
A
ASN
53
n
24
ASN
53
A
LEU
54
n
25
LEU
54
A
TYR
55
n
26
TYR
55
A
ARG
56
n
27
ARG
56
A
LEU
57
n
28
LEU
57
A
LEU
58
n
29
LEU
58
A
GLU
59
n
30
GLU
59
A
LEU
60
n
31
LEU
60
A
ASP
61
n
32
ASP
61
A
GLN
62
n
33
GLN
62
A
PRO
63
n
34
PRO
63
A
PRO
64
n
35
PRO
64
A
LYS
65
n
36
LYS
65
A
ALA
66
n
37
ALA
66
A
ASP
67
n
38
ASP
67
A
GLU
68
n
39
GLU
68
A
ASP
69
n
40
ASP
69
A
PRO
70
n
41
PRO
70
A
GLY
71
n
42
GLY
71
A
THR
72
n
43
THR
72
A
PRO
73
n
44
PRO
73
A
LYS
74
n
45
LYS
74
A
PRO
75
n
46
PRO
75
A
VAL
76
n
47
VAL
76
A
SER
77
n
48
SER
77
A
PHE
78
n
49
PHE
78
A
THR
79
n
50
THR
79
A
VAL
80
n
51
VAL
80
A
LYS
81
n
52
LYS
81
A
GLU
82
n
53
GLU
82
A
THR
83
n
54
THR
83
A
VAL
84
n
55
VAL
84
A
CYS
85
n
56
CYS
85
A
PRO
86
n
57
PRO
86
A
ARG
87
n
58
ARG
87
A
PRO
88
n
59
PRO
88
A
THR
89
n
60
THR
89
A
ARG
90
n
61
ARG
90
A
GLN
91
n
62
GLN
91
A
PRO
92
n
63
PRO
92
A
PRO
93
n
64
PRO
93
A
GLU
94
n
65
GLU
94
A
LEU
95
n
66
LEU
95
A
CYS
96
n
67
CYS
96
A
ASP
97
n
68
ASP
97
A
PHE
98
n
69
PHE
98
A
LYS
99
n
70
LYS
99
A
GLU
100
n
71
GLU
100
A
ASN
101
n
72
ASN
101
A
GLY
102
n
73
GLY
102
A
ARG
103
n
74
ARG
103
A
VAL
104
n
75
VAL
104
A
LYS
105
n
76
LYS
105
A
GLN
106
n
77
GLN
106
A
CYS
107
n
78
CYS
107
A
VAL
108
n
79
VAL
108
A
GLY
109
n
80
GLY
109
A
THR
110
n
81
THR
110
A
VAL
111
n
82
VAL
111
A
THR
112
n
83
THR
112
A
LEU
113
n
84
LEU
113
A
ASP
114
n
85
ASP
114
A
n
86
115
A
n
87
116
A
n
88
117
A
n
89
118
A
n
90
119
A
n
91
120
A
ASP
121
n
92
ASP
121
A
ILE
122
n
93
ILE
122
A
THR
123
n
94
THR
123
A
CYS
124
n
95
CYS
124
A
ASN
125
n
96
ASN
125
A
GLU
126
n
97
GLU
126
A
VAL
127
n
98
VAL
127
A
GLN
128
n
99
GLN
128
A
n
100
129
A
n
101
130
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
4890
-32
12850
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
12_564
x,x-y+1,-z-1/6
crystal symmetry operation
-26.0860000000
45.1822773662
-22.5805000000
A
N
PHE
78
A
N
PHE
49
A
O
CYS
107
A
O
CYS
78
A
N
GLN
106
A
N
GLN
77
A
O
ASN
125
A
O
ASN
96
1
A
GLN
30
A
GLN
1
1
Y
1
A
GLN
115
A
GLN
86
1
Y
1
A
ILE
116
A
ILE
87
1
Y
1
A
LYS
117
A
LYS
88
1
Y
1
A
ASP
118
A
ASP
89
1
Y
1
A
PRO
119
A
PRO
90
1
Y
1
A
LEU
120
A
LEU
91
1
Y
1
A
GLY
129
A
GLY
100
1
Y
1
A
VAL
130
A
VAL
101
1
Y
1
A
PRO
63
-52.26
106.70
1
A
ASP
69
71.98
57.65
1
A
PRO
70
-72.76
-125.66
1
A
GLU
100
-38.79
-82.19
1
A
ASN
101
-103.30
57.49
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
33.6
1.32
7.71
0.00
1.32
0.00
-2.65
0.279
0.014
0.215
0.21501
0.21501
2.50
27.10
386
3922
3922
9.8
93.3
RANDOM
1799954.70
1799954.70
1
RESTRAINED
THROUGHOUT
0.0
0.0
FOURIER SYNTHESIS
PDB ENTRY 1KWI
Engh & Huber
FLAT MODEL
104.394
0.429523
0.36
0.28
5.00
0.26
0.23
2.50
27.10
45
767
0
0
722
0.008
1.4
24.0
1.03
4.93
1.50
8.12
2.00
5.06
2.00
8.05
2.50
0.268
0.033
0.231
2.66
67
541
541
6
11.0
91.3
43.8
2.5
27.1
1LXE
3922
3922
0.
0.
0.092
0.092
1
18.5
91.3
0.241
2.5
2.66
4.6
541
0.241
1
91.3
data reduction
DENZO
data reduction
AUTOMAR
refinement
CNS
phasing
CNS
PROTEGRIN 3 PRECURSOR
CRYSTAL STRUCTURE OF THE CATHELICIDIN MOTIF OF PROTEGRINS
1
N
N
2
N
N
The second part of the biological assembly is generated
by the two fold axis:
Rotation : 0.5000 0.8660 0.0
0.8660 -0.5000 0.0
0.0 0.0 -1.0
Translation : -26.086 45.183 -22.580
A
ALA
31
A
ALA
2
HELX_P
A
GLN
48
A
GLN
19
1
1
18
A
PRO
92
A
PRO
63
HELX_P
A
CYS
96
A
CYS
67
5
2
5
disulf
2.033
A
CYS
85
A
SG
CYS
56
1_555
A
CYS
96
A
SG
CYS
67
1_555
disulf
2.035
A
CYS
107
A
SG
CYS
78
1_555
A
CYS
124
A
SG
CYS
95
1_555
ANTIMICROBIAL PROTEIN
PROTEGRIN, CATHELICIDIN MOTIF, DISULFIDE, domain swapping, ANTIMICROBIAL PROTEIN
PG3_PIG
UNP
1
30
P32196
QALSYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVG
TVTLDQIKDPLDITCNEVQGV
30
130
1LXE
30
130
P32196
A
1
1
101
3
anti-parallel
anti-parallel
A
LYS
74
A
LYS
45
A
LYS
81
A
LYS
52
A
VAL
104
A
VAL
75
A
VAL
111
A
VAL
82
A
ILE
122
A
ILE
93
A
GLU
126
A
GLU
97
179
P 65 2 2