0.009872 0.005700 0.000000 0.000000 0.011399 0.000000 0.000000 0.000000 0.023917 0.00000 0.00000 0.00000 Greenwald, J. Groppe, J. Kwiatkowski, W. Choe, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 101.294 101.294 41.812 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Mol.Cell MOCEFL 2168 1097-2765 11 605 617 10.1016/S1097-2765(03)00094-7 12667445 The BMP7/ActRII Extracellular Domain Complex Provides New Insights into the Cooperative Nature of Receptor Assembly 2003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirror IMAGE PLATE 2000-09-01 MARRESEARCH Si 311 SINGLE WAVELENGTH M x-ray 1 0.98 1.0 BL9-1 SSRL 0.98 SYNCHROTRON SSRL BEAMLINE BL9-1 15699.730 BONE MORPHOGENETIC PROTEIN 7 1 man polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 1 man non-polymer 18.015 water 71 nat water BMP7, Osteogenic protein 1, OP-1 no no STGSKQRSQNRSKTPKNQEALRMANVAENSSSDQRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMN ATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH STGSKQRSQNRSKTPKNQEALRMANVAENSSSDQRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMN ATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Chinese hamster Cricetulus sample DHFR- BMP7 9606 Homo sapiens OVARY CELLS 10029 Cricetulus griseus BACULOVIRUS 1 3.94 68.80 VAPOR DIFFUSION, HANGING DROP 4.5 20% MPD, 0.1M Sodium Acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly pdbx_unobs_or_zero_occ_atoms struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Derived calculations Version format compliance Advisory Data collection Derived calculations Structure summary 1 0 2003-04-01 1 1 2008-04-28 1 2 2011-07-13 1 3 2020-07-29 _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc The same protein originally refined to 2.8 Angstroms. RCSB Y RCSB 2002-06-05 REL REL NAG 2-acetamido-2-deoxy-beta-D-glucopyranose HOH water NAG 180 2 NAG NAG 180 A HOH 1 3 HOH HOH 181 A HOH 2 3 HOH HOH 182 A HOH 3 3 HOH HOH 183 A HOH 4 3 HOH HOH 184 A HOH 5 3 HOH HOH 185 A HOH 6 3 HOH HOH 186 A HOH 7 3 HOH HOH 187 A HOH 8 3 HOH HOH 188 A HOH 9 3 HOH HOH 189 A HOH 10 3 HOH HOH 190 A HOH 11 3 HOH HOH 191 A HOH 12 3 HOH HOH 192 A HOH 13 3 HOH HOH 193 A HOH 14 3 HOH HOH 194 A HOH 15 3 HOH HOH 195 A HOH 16 3 HOH HOH 196 A HOH 17 3 HOH HOH 197 A HOH 18 3 HOH HOH 198 A HOH 19 3 HOH HOH 199 A HOH 20 3 HOH HOH 200 A HOH 21 3 HOH HOH 201 A HOH 22 3 HOH HOH 202 A HOH 23 3 HOH HOH 203 A HOH 24 3 HOH HOH 204 A HOH 25 3 HOH HOH 205 A HOH 26 3 HOH HOH 206 A HOH 27 3 HOH HOH 207 A HOH 28 3 HOH HOH 208 A HOH 29 3 HOH HOH 209 A HOH 30 3 HOH HOH 210 A HOH 31 3 HOH HOH 211 A HOH 32 3 HOH HOH 212 A HOH 33 3 HOH HOH 213 A HOH 34 3 HOH HOH 214 A HOH 35 3 HOH HOH 215 A HOH 36 3 HOH HOH 216 A HOH 37 3 HOH HOH 217 A HOH 38 3 HOH HOH 218 A HOH 39 3 HOH HOH 219 A HOH 40 3 HOH HOH 220 A HOH 41 3 HOH HOH 221 A HOH 42 3 HOH HOH 222 A HOH 43 3 HOH HOH 223 A HOH 44 3 HOH HOH 224 A HOH 45 3 HOH HOH 225 A HOH 46 3 HOH HOH 226 A HOH 47 3 HOH HOH 227 A HOH 48 3 HOH HOH 228 A HOH 49 3 HOH HOH 229 A HOH 50 3 HOH HOH 230 A HOH 51 3 HOH HOH 231 A HOH 52 3 HOH HOH 232 A HOH 53 3 HOH HOH 233 A HOH 54 3 HOH HOH 234 A HOH 55 3 HOH HOH 235 A HOH 56 3 HOH HOH 236 A HOH 57 3 HOH HOH 237 A HOH 58 3 HOH HOH 238 A HOH 59 3 HOH HOH 239 A HOH 60 3 HOH HOH 240 A HOH 61 3 HOH HOH 241 A HOH 62 3 HOH HOH 242 A HOH 63 3 HOH HOH 243 A HOH 64 3 HOH HOH 244 A HOH 65 3 HOH HOH 245 A HOH 66 3 HOH HOH 246 A HOH 67 3 HOH HOH 247 A HOH 68 3 HOH HOH 248 A HOH 69 3 HOH HOH 249 A HOH 70 3 HOH HOH 250 A HOH 71 3 HOH HOH 251 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A n 9 9 A n 10 10 A n 11 11 A n 12 12 A n 13 13 A n 14 14 A n 15 15 A n 16 16 A n 17 17 A n 18 18 A n 19 19 A n 20 20 A n 21 21 A n 22 22 A n 23 23 A n 24 24 A n 25 25 A n 26 26 A n 27 27 A n 28 28 A n 29 29 A n 30 30 A n 31 31 A n 32 32 A n 33 33 A n 34 34 A n 35 35 A GLN 36 n 36 GLN 36 A ALA 37 n 37 ALA 37 A CYS 38 n 38 CYS 38 A LYS 39 n 39 LYS 39 A LYS 40 n 40 LYS 40 A HIS 41 n 41 HIS 41 A GLU 42 n 42 GLU 42 A LEU 43 n 43 LEU 43 A TYR 44 n 44 TYR 44 A VAL 45 n 45 VAL 45 A SER 46 n 46 SER 46 A PHE 47 n 47 PHE 47 A ARG 48 n 48 ARG 48 A ASP 49 n 49 ASP 49 A LEU 50 n 50 LEU 50 A GLY 51 n 51 GLY 51 A TRP 52 n 52 TRP 52 A GLN 53 n 53 GLN 53 A ASP 54 n 54 ASP 54 A TRP 55 n 55 TRP 55 A ILE 56 n 56 ILE 56 A ILE 57 n 57 ILE 57 A ALA 58 n 58 ALA 58 A PRO 59 n 59 PRO 59 A GLU 60 n 60 GLU 60 A GLY 61 n 61 GLY 61 A TYR 62 n 62 TYR 62 A ALA 63 n 63 ALA 63 A ALA 64 n 64 ALA 64 A TYR 65 n 65 TYR 65 A TYR 66 n 66 TYR 66 A CYS 67 n 67 CYS 67 A GLU 68 n 68 GLU 68 A GLY 69 n 69 GLY 69 A GLU 70 n 70 GLU 70 A CYS 71 n 71 CYS 71 A ALA 72 n 72 ALA 72 A PHE 73 n 73 PHE 73 A PRO 74 n 74 PRO 74 A LEU 75 n 75 LEU 75 A ASN 76 n 76 ASN 76 A SER 77 n 77 SER 77 A TYR 78 n 78 TYR 78 A MET 79 n 79 MET 79 A ASN 80 n 80 ASN 80 A ALA 81 n 81 ALA 81 A THR 82 n 82 THR 82 A ASN 83 n 83 ASN 83 A HIS 84 n 84 HIS 84 A ALA 85 n 85 ALA 85 A ILE 86 n 86 ILE 86 A VAL 87 n 87 VAL 87 A GLN 88 n 88 GLN 88 A THR 89 n 89 THR 89 A LEU 90 n 90 LEU 90 A VAL 91 n 91 VAL 91 A HIS 92 n 92 HIS 92 A PHE 93 n 93 PHE 93 A ILE 94 n 94 ILE 94 A ASN 95 n 95 ASN 95 A PRO 96 n 96 PRO 96 A GLU 97 n 97 GLU 97 A THR 98 n 98 THR 98 A VAL 99 n 99 VAL 99 A PRO 100 n 100 PRO 100 A LYS 101 n 101 LYS 101 A PRO 102 n 102 PRO 102 A CYS 103 n 103 CYS 103 A CYS 104 n 104 CYS 104 A ALA 105 n 105 ALA 105 A PRO 106 n 106 PRO 106 A THR 107 n 107 THR 107 A GLN 108 n 108 GLN 108 A LEU 109 n 109 LEU 109 A ASN 110 n 110 ASN 110 A ALA 111 n 111 ALA 111 A ILE 112 n 112 ILE 112 A SER 113 n 113 SER 113 A VAL 114 n 114 VAL 114 A LEU 115 n 115 LEU 115 A TYR 116 n 116 TYR 116 A PHE 117 n 117 PHE 117 A ASP 118 n 118 ASP 118 A ASP 119 n 119 ASP 119 A SER 120 n 120 SER 120 A SER 121 n 121 SER 121 A ASN 122 n 122 ASN 122 A VAL 123 n 123 VAL 123 A ILE 124 n 124 ILE 124 A LEU 125 n 125 LEU 125 A LYS 126 n 126 LYS 126 A LYS 127 n 127 LYS 127 A TYR 128 n 128 TYR 128 A ARG 129 n 129 ARG 129 A ASN 130 n 130 ASN 130 A MET 131 n 131 MET 131 A VAL 132 n 132 VAL 132 A VAL 133 n 133 VAL 133 A ARG 134 n 134 ARG 134 A ALA 135 n 135 ALA 135 A CYS 136 n 136 CYS 136 A GLY 137 n 137 GLY 137 A CYS 138 n 138 CYS 138 A HIS 139 n 139 HIS 139 A author_and_software_defined_assembly PISA,PQS 2 dimeric 3170 -15 12180 A ASN 80 GLYCOSYLATION SITE A ASN 80 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 5_675 x-y+1,-y+2,-z+1/3 crystal symmetry operation 0.0000000000 175.4463545019 13.9373333333 A N HIS 41 A N HIS 41 A O TYR 66 A O TYR 66 A N VAL 45 A N VAL 45 A O TYR 62 A O TYR 62 A N ALA 58 A N ALA 58 A O LEU 115 A O LEU 115 A N ILE 112 A N ILE 112 A O TYR 128 A O TYR 128 1 A SER 1 A SER 1 1 Y 1 A THR 2 A THR 2 1 Y 1 A GLY 3 A GLY 3 1 Y 1 A SER 4 A SER 4 1 Y 1 A LYS 5 A LYS 5 1 Y 1 A GLN 6 A GLN 6 1 Y 1 A ARG 7 A ARG 7 1 Y 1 A SER 8 A SER 8 1 Y 1 A GLN 9 A GLN 9 1 Y 1 A ASN 10 A ASN 10 1 Y 1 A ARG 11 A ARG 11 1 Y 1 A SER 12 A SER 12 1 Y 1 A LYS 13 A LYS 13 1 Y 1 A THR 14 A THR 14 1 Y 1 A PRO 15 A PRO 15 1 Y 1 A LYS 16 A LYS 16 1 Y 1 A ASN 17 A ASN 17 1 Y 1 A GLN 18 A GLN 18 1 Y 1 A GLU 19 A GLU 19 1 Y 1 A ALA 20 A ALA 20 1 Y 1 A LEU 21 A LEU 21 1 Y 1 A ARG 22 A ARG 22 1 Y 1 A MET 23 A MET 23 1 Y 1 A ALA 24 A ALA 24 1 Y 1 A ASN 25 A ASN 25 1 Y 1 A VAL 26 A VAL 26 1 Y 1 A ALA 27 A ALA 27 1 Y 1 A GLU 28 A GLU 28 1 Y 1 A ASN 29 A ASN 29 1 Y 1 A SER 30 A SER 30 1 Y 1 A SER 31 A SER 31 1 Y 1 A SER 32 A SER 32 1 Y 1 A ASP 33 A ASP 33 1 Y 1 A GLN 34 A GLN 34 1 Y 1 A ARG 35 A ARG 35 1 Y 1 A A OD1 NH1 ASN ARG 110 134 2.18 1 7.98 1.10 114.20 122.18 A A A CA CB SG CYS CYS CYS 103 103 103 N 1 -12.67 2.00 110.40 97.73 A A A CB CA C PHE PHE PHE 117 117 117 N 1 -17.25 2.10 120.10 102.85 A A A CA C O HIS HIS HIS 139 139 139 N 1 A A O O HOH HOH 244 244 1.22 1_555 5_675 1 A A SG SG CYS CYS 103 103 1.67 1_555 5_675 1 A TYR 65 63.40 174.94 35.983 -1.29 -0.64 0.00 -1.29 0.00 1.93 0.934 0.934 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.24449 0.22788 0.22873 0.22873 2.00 23.96 795 14892 14892 5.1 92.61 4.128 0.119 RANDOM 1 Isotropic THROUGHOUT 0 MOLECULAR REPLACEMENT 0.137 0.127 0.80 0.80 1.40 PDB entry 1BMP Engh & Huber BABINET MODEL WITH MASK 2.00 23.96 71 913 14 0 828 0.030 0.021 872 0.001 0.020 742 2.462 1.949 1198 1.424 3.000 1729 5.157 3.000 107 23.505 15.000 139 0.156 0.200 131 0.011 0.020 967 0.008 0.020 173 0.306 0.300 175 0.232 0.300 650 0.389 0.500 2 0.409 0.500 68 0.120 0.500 3 0.309 0.300 24 0.255 0.300 42 0.667 0.500 10 1.618 1.500 528 2.880 2.000 859 4.093 3.000 344 6.526 4.500 339 0.314 0.265 2.052 66 1160 20 2.0 25 1LXI 15770 15770 0 -3 0.054 1 16.9 99.6 2.00 2.08 0.333 1 99.6 data collection HKL-2000 data reduction TRUNCATE refinement REFMAC 5.0 data reduction HKL-2000 data scaling CCP4 (TRUNCATE) BONE MORPHOGENETIC PROTEIN 7 Refinement of BMP7 crystal structure 1 N N 2 N N 3 N N The second part of the biological assembly is generated by the two fold axis: x-y+1,-y+2,1/3-z A PHE 47 A PHE 47 HELX_P A GLY 51 A GLY 51 1 1 5 A ASN 76 A ASN 76 HELX_P A ASN 80 A ASN 80 5 2 5 A THR 82 A THR 82 HELX_P A ASN 95 A ASN 95 1 3 14 disulf 2.038 A CYS 38 A SG CYS 38 1_555 A CYS 104 A SG CYS 104 1_555 disulf 2.029 A CYS 67 A SG CYS 67 1_555 A CYS 136 A SG CYS 136 1_555 disulf 2.129 A CYS 71 A SG CYS 71 1_555 A CYS 138 A SG CYS 138 1_555 covale 1.457 one N-Glycosylation A ASN 80 A ND2 ASN 80 1_555 A NAG 180 B C1 NAG 1_555 HORMONE/GROWTH FACTOR Cystine-knot growth factor, HORMONE-GROWTH FACTOR COMPLEX A ALA 58 A ALA 58 1 A PRO 59 A PRO 59 -2.92 A PHE 73 A PHE 73 1 A PRO 74 A PRO 74 3.31 BMP7_HUMAN UNP 1 293 P18075 STGSKQRSQNRSKTPKNQEALRMANVAENSSSDQRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMN ATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH 293 431 1LXI 1 139 P18075 A 1 1 139 2 2 3 anti-parallel anti-parallel anti-parallel anti-parallel A LYS 39 A LYS 39 A HIS 41 A HIS 41 A TYR 66 A TYR 66 A GLU 68 A GLU 68 A TYR 44 A TYR 44 A SER 46 A SER 46 A GLY 61 A GLY 61 A ALA 63 A ALA 63 A ILE 56 A ILE 56 A ALA 58 A ALA 58 A CYS 104 A CYS 104 A PHE 117 A PHE 117 A VAL 123 A VAL 123 A CYS 138 A CYS 138 154 P 32 2 1