0.009872
0.005700
0.000000
0.000000
0.011399
0.000000
0.000000
0.000000
0.023917
0.00000
0.00000
0.00000
Greenwald, J.
Groppe, J.
Kwiatkowski, W.
Choe, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
101.294
101.294
41.812
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Mol.Cell
MOCEFL
2168
1097-2765
11
605
617
10.1016/S1097-2765(03)00094-7
12667445
The BMP7/ActRII Extracellular Domain Complex Provides New Insights into
the Cooperative Nature of Receptor Assembly
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirror
IMAGE PLATE
2000-09-01
MARRESEARCH
Si 311
SINGLE WAVELENGTH
M
x-ray
1
0.98
1.0
BL9-1
SSRL
0.98
SYNCHROTRON
SSRL BEAMLINE BL9-1
15699.730
BONE MORPHOGENETIC PROTEIN 7
1
man
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
18.015
water
71
nat
water
BMP7, Osteogenic protein 1, OP-1
no
no
STGSKQRSQNRSKTPKNQEALRMANVAENSSSDQRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMN
ATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH
STGSKQRSQNRSKTPKNQEALRMANVAENSSSDQRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMN
ATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Chinese hamster
Cricetulus
sample
DHFR-
BMP7
9606
Homo sapiens
OVARY CELLS
10029
Cricetulus griseus
BACULOVIRUS
1
3.94
68.80
VAPOR DIFFUSION, HANGING DROP
4.5
20% MPD, 0.1M Sodium Acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
pdbx_unobs_or_zero_occ_atoms
struct_conn
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Derived calculations
Version format compliance
Advisory
Data collection
Derived calculations
Structure summary
1
0
2003-04-01
1
1
2008-04-28
1
2
2011-07-13
1
3
2020-07-29
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
The same protein originally refined to 2.8 Angstroms.
RCSB
Y
RCSB
2002-06-05
REL
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
HOH
water
NAG
180
2
NAG
NAG
180
A
HOH
1
3
HOH
HOH
181
A
HOH
2
3
HOH
HOH
182
A
HOH
3
3
HOH
HOH
183
A
HOH
4
3
HOH
HOH
184
A
HOH
5
3
HOH
HOH
185
A
HOH
6
3
HOH
HOH
186
A
HOH
7
3
HOH
HOH
187
A
HOH
8
3
HOH
HOH
188
A
HOH
9
3
HOH
HOH
189
A
HOH
10
3
HOH
HOH
190
A
HOH
11
3
HOH
HOH
191
A
HOH
12
3
HOH
HOH
192
A
HOH
13
3
HOH
HOH
193
A
HOH
14
3
HOH
HOH
194
A
HOH
15
3
HOH
HOH
195
A
HOH
16
3
HOH
HOH
196
A
HOH
17
3
HOH
HOH
197
A
HOH
18
3
HOH
HOH
198
A
HOH
19
3
HOH
HOH
199
A
HOH
20
3
HOH
HOH
200
A
HOH
21
3
HOH
HOH
201
A
HOH
22
3
HOH
HOH
202
A
HOH
23
3
HOH
HOH
203
A
HOH
24
3
HOH
HOH
204
A
HOH
25
3
HOH
HOH
205
A
HOH
26
3
HOH
HOH
206
A
HOH
27
3
HOH
HOH
207
A
HOH
28
3
HOH
HOH
208
A
HOH
29
3
HOH
HOH
209
A
HOH
30
3
HOH
HOH
210
A
HOH
31
3
HOH
HOH
211
A
HOH
32
3
HOH
HOH
212
A
HOH
33
3
HOH
HOH
213
A
HOH
34
3
HOH
HOH
214
A
HOH
35
3
HOH
HOH
215
A
HOH
36
3
HOH
HOH
216
A
HOH
37
3
HOH
HOH
217
A
HOH
38
3
HOH
HOH
218
A
HOH
39
3
HOH
HOH
219
A
HOH
40
3
HOH
HOH
220
A
HOH
41
3
HOH
HOH
221
A
HOH
42
3
HOH
HOH
222
A
HOH
43
3
HOH
HOH
223
A
HOH
44
3
HOH
HOH
224
A
HOH
45
3
HOH
HOH
225
A
HOH
46
3
HOH
HOH
226
A
HOH
47
3
HOH
HOH
227
A
HOH
48
3
HOH
HOH
228
A
HOH
49
3
HOH
HOH
229
A
HOH
50
3
HOH
HOH
230
A
HOH
51
3
HOH
HOH
231
A
HOH
52
3
HOH
HOH
232
A
HOH
53
3
HOH
HOH
233
A
HOH
54
3
HOH
HOH
234
A
HOH
55
3
HOH
HOH
235
A
HOH
56
3
HOH
HOH
236
A
HOH
57
3
HOH
HOH
237
A
HOH
58
3
HOH
HOH
238
A
HOH
59
3
HOH
HOH
239
A
HOH
60
3
HOH
HOH
240
A
HOH
61
3
HOH
HOH
241
A
HOH
62
3
HOH
HOH
242
A
HOH
63
3
HOH
HOH
243
A
HOH
64
3
HOH
HOH
244
A
HOH
65
3
HOH
HOH
245
A
HOH
66
3
HOH
HOH
246
A
HOH
67
3
HOH
HOH
247
A
HOH
68
3
HOH
HOH
248
A
HOH
69
3
HOH
HOH
249
A
HOH
70
3
HOH
HOH
250
A
HOH
71
3
HOH
HOH
251
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
n
16
16
A
n
17
17
A
n
18
18
A
n
19
19
A
n
20
20
A
n
21
21
A
n
22
22
A
n
23
23
A
n
24
24
A
n
25
25
A
n
26
26
A
n
27
27
A
n
28
28
A
n
29
29
A
n
30
30
A
n
31
31
A
n
32
32
A
n
33
33
A
n
34
34
A
n
35
35
A
GLN
36
n
36
GLN
36
A
ALA
37
n
37
ALA
37
A
CYS
38
n
38
CYS
38
A
LYS
39
n
39
LYS
39
A
LYS
40
n
40
LYS
40
A
HIS
41
n
41
HIS
41
A
GLU
42
n
42
GLU
42
A
LEU
43
n
43
LEU
43
A
TYR
44
n
44
TYR
44
A
VAL
45
n
45
VAL
45
A
SER
46
n
46
SER
46
A
PHE
47
n
47
PHE
47
A
ARG
48
n
48
ARG
48
A
ASP
49
n
49
ASP
49
A
LEU
50
n
50
LEU
50
A
GLY
51
n
51
GLY
51
A
TRP
52
n
52
TRP
52
A
GLN
53
n
53
GLN
53
A
ASP
54
n
54
ASP
54
A
TRP
55
n
55
TRP
55
A
ILE
56
n
56
ILE
56
A
ILE
57
n
57
ILE
57
A
ALA
58
n
58
ALA
58
A
PRO
59
n
59
PRO
59
A
GLU
60
n
60
GLU
60
A
GLY
61
n
61
GLY
61
A
TYR
62
n
62
TYR
62
A
ALA
63
n
63
ALA
63
A
ALA
64
n
64
ALA
64
A
TYR
65
n
65
TYR
65
A
TYR
66
n
66
TYR
66
A
CYS
67
n
67
CYS
67
A
GLU
68
n
68
GLU
68
A
GLY
69
n
69
GLY
69
A
GLU
70
n
70
GLU
70
A
CYS
71
n
71
CYS
71
A
ALA
72
n
72
ALA
72
A
PHE
73
n
73
PHE
73
A
PRO
74
n
74
PRO
74
A
LEU
75
n
75
LEU
75
A
ASN
76
n
76
ASN
76
A
SER
77
n
77
SER
77
A
TYR
78
n
78
TYR
78
A
MET
79
n
79
MET
79
A
ASN
80
n
80
ASN
80
A
ALA
81
n
81
ALA
81
A
THR
82
n
82
THR
82
A
ASN
83
n
83
ASN
83
A
HIS
84
n
84
HIS
84
A
ALA
85
n
85
ALA
85
A
ILE
86
n
86
ILE
86
A
VAL
87
n
87
VAL
87
A
GLN
88
n
88
GLN
88
A
THR
89
n
89
THR
89
A
LEU
90
n
90
LEU
90
A
VAL
91
n
91
VAL
91
A
HIS
92
n
92
HIS
92
A
PHE
93
n
93
PHE
93
A
ILE
94
n
94
ILE
94
A
ASN
95
n
95
ASN
95
A
PRO
96
n
96
PRO
96
A
GLU
97
n
97
GLU
97
A
THR
98
n
98
THR
98
A
VAL
99
n
99
VAL
99
A
PRO
100
n
100
PRO
100
A
LYS
101
n
101
LYS
101
A
PRO
102
n
102
PRO
102
A
CYS
103
n
103
CYS
103
A
CYS
104
n
104
CYS
104
A
ALA
105
n
105
ALA
105
A
PRO
106
n
106
PRO
106
A
THR
107
n
107
THR
107
A
GLN
108
n
108
GLN
108
A
LEU
109
n
109
LEU
109
A
ASN
110
n
110
ASN
110
A
ALA
111
n
111
ALA
111
A
ILE
112
n
112
ILE
112
A
SER
113
n
113
SER
113
A
VAL
114
n
114
VAL
114
A
LEU
115
n
115
LEU
115
A
TYR
116
n
116
TYR
116
A
PHE
117
n
117
PHE
117
A
ASP
118
n
118
ASP
118
A
ASP
119
n
119
ASP
119
A
SER
120
n
120
SER
120
A
SER
121
n
121
SER
121
A
ASN
122
n
122
ASN
122
A
VAL
123
n
123
VAL
123
A
ILE
124
n
124
ILE
124
A
LEU
125
n
125
LEU
125
A
LYS
126
n
126
LYS
126
A
LYS
127
n
127
LYS
127
A
TYR
128
n
128
TYR
128
A
ARG
129
n
129
ARG
129
A
ASN
130
n
130
ASN
130
A
MET
131
n
131
MET
131
A
VAL
132
n
132
VAL
132
A
VAL
133
n
133
VAL
133
A
ARG
134
n
134
ARG
134
A
ALA
135
n
135
ALA
135
A
CYS
136
n
136
CYS
136
A
GLY
137
n
137
GLY
137
A
CYS
138
n
138
CYS
138
A
HIS
139
n
139
HIS
139
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
3170
-15
12180
A
ASN
80
GLYCOSYLATION SITE
A
ASN
80
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_675
x-y+1,-y+2,-z+1/3
crystal symmetry operation
0.0000000000
175.4463545019
13.9373333333
A
N
HIS
41
A
N
HIS
41
A
O
TYR
66
A
O
TYR
66
A
N
VAL
45
A
N
VAL
45
A
O
TYR
62
A
O
TYR
62
A
N
ALA
58
A
N
ALA
58
A
O
LEU
115
A
O
LEU
115
A
N
ILE
112
A
N
ILE
112
A
O
TYR
128
A
O
TYR
128
1
A
SER
1
A
SER
1
1
Y
1
A
THR
2
A
THR
2
1
Y
1
A
GLY
3
A
GLY
3
1
Y
1
A
SER
4
A
SER
4
1
Y
1
A
LYS
5
A
LYS
5
1
Y
1
A
GLN
6
A
GLN
6
1
Y
1
A
ARG
7
A
ARG
7
1
Y
1
A
SER
8
A
SER
8
1
Y
1
A
GLN
9
A
GLN
9
1
Y
1
A
ASN
10
A
ASN
10
1
Y
1
A
ARG
11
A
ARG
11
1
Y
1
A
SER
12
A
SER
12
1
Y
1
A
LYS
13
A
LYS
13
1
Y
1
A
THR
14
A
THR
14
1
Y
1
A
PRO
15
A
PRO
15
1
Y
1
A
LYS
16
A
LYS
16
1
Y
1
A
ASN
17
A
ASN
17
1
Y
1
A
GLN
18
A
GLN
18
1
Y
1
A
GLU
19
A
GLU
19
1
Y
1
A
ALA
20
A
ALA
20
1
Y
1
A
LEU
21
A
LEU
21
1
Y
1
A
ARG
22
A
ARG
22
1
Y
1
A
MET
23
A
MET
23
1
Y
1
A
ALA
24
A
ALA
24
1
Y
1
A
ASN
25
A
ASN
25
1
Y
1
A
VAL
26
A
VAL
26
1
Y
1
A
ALA
27
A
ALA
27
1
Y
1
A
GLU
28
A
GLU
28
1
Y
1
A
ASN
29
A
ASN
29
1
Y
1
A
SER
30
A
SER
30
1
Y
1
A
SER
31
A
SER
31
1
Y
1
A
SER
32
A
SER
32
1
Y
1
A
ASP
33
A
ASP
33
1
Y
1
A
GLN
34
A
GLN
34
1
Y
1
A
ARG
35
A
ARG
35
1
Y
1
A
A
OD1
NH1
ASN
ARG
110
134
2.18
1
7.98
1.10
114.20
122.18
A
A
A
CA
CB
SG
CYS
CYS
CYS
103
103
103
N
1
-12.67
2.00
110.40
97.73
A
A
A
CB
CA
C
PHE
PHE
PHE
117
117
117
N
1
-17.25
2.10
120.10
102.85
A
A
A
CA
C
O
HIS
HIS
HIS
139
139
139
N
1
A
A
O
O
HOH
HOH
244
244
1.22
1_555
5_675
1
A
A
SG
SG
CYS
CYS
103
103
1.67
1_555
5_675
1
A
TYR
65
63.40
174.94
35.983
-1.29
-0.64
0.00
-1.29
0.00
1.93
0.934
0.934
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.24449
0.22788
0.22873
0.22873
2.00
23.96
795
14892
14892
5.1
92.61
4.128
0.119
RANDOM
1
Isotropic
THROUGHOUT
0
MOLECULAR REPLACEMENT
0.137
0.127
0.80
0.80
1.40
PDB entry 1BMP
Engh & Huber
BABINET MODEL WITH MASK
2.00
23.96
71
913
14
0
828
0.030
0.021
872
0.001
0.020
742
2.462
1.949
1198
1.424
3.000
1729
5.157
3.000
107
23.505
15.000
139
0.156
0.200
131
0.011
0.020
967
0.008
0.020
173
0.306
0.300
175
0.232
0.300
650
0.389
0.500
2
0.409
0.500
68
0.120
0.500
3
0.309
0.300
24
0.255
0.300
42
0.667
0.500
10
1.618
1.500
528
2.880
2.000
859
4.093
3.000
344
6.526
4.500
339
0.314
0.265
2.052
66
1160
20
2.0
25
1LXI
15770
15770
0
-3
0.054
1
16.9
99.6
2.00
2.08
0.333
1
99.6
data collection
HKL-2000
data reduction
TRUNCATE
refinement
REFMAC
5.0
data reduction
HKL-2000
data scaling
CCP4
(TRUNCATE)
BONE MORPHOGENETIC PROTEIN 7
Refinement of BMP7 crystal structure
1
N
N
2
N
N
3
N
N
The second part of the biological assembly is generated by the two fold axis:
x-y+1,-y+2,1/3-z
A
PHE
47
A
PHE
47
HELX_P
A
GLY
51
A
GLY
51
1
1
5
A
ASN
76
A
ASN
76
HELX_P
A
ASN
80
A
ASN
80
5
2
5
A
THR
82
A
THR
82
HELX_P
A
ASN
95
A
ASN
95
1
3
14
disulf
2.038
A
CYS
38
A
SG
CYS
38
1_555
A
CYS
104
A
SG
CYS
104
1_555
disulf
2.029
A
CYS
67
A
SG
CYS
67
1_555
A
CYS
136
A
SG
CYS
136
1_555
disulf
2.129
A
CYS
71
A
SG
CYS
71
1_555
A
CYS
138
A
SG
CYS
138
1_555
covale
1.457
one
N-Glycosylation
A
ASN
80
A
ND2
ASN
80
1_555
A
NAG
180
B
C1
NAG
1_555
HORMONE/GROWTH FACTOR
Cystine-knot growth factor, HORMONE-GROWTH FACTOR COMPLEX
A
ALA
58
A
ALA
58
1
A
PRO
59
A
PRO
59
-2.92
A
PHE
73
A
PHE
73
1
A
PRO
74
A
PRO
74
3.31
BMP7_HUMAN
UNP
1
293
P18075
STGSKQRSQNRSKTPKNQEALRMANVAENSSSDQRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMN
ATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH
293
431
1LXI
1
139
P18075
A
1
1
139
2
2
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
39
A
LYS
39
A
HIS
41
A
HIS
41
A
TYR
66
A
TYR
66
A
GLU
68
A
GLU
68
A
TYR
44
A
TYR
44
A
SER
46
A
SER
46
A
GLY
61
A
GLY
61
A
ALA
63
A
ALA
63
A
ILE
56
A
ILE
56
A
ALA
58
A
ALA
58
A
CYS
104
A
CYS
104
A
PHE
117
A
PHE
117
A
VAL
123
A
VAL
123
A
CYS
138
A
CYS
138
154
P 32 2 1