0.015314 0.000000 0.000000 0.000000 0.010893 0.000000 0.000000 0.000000 0.014728 0.00000 0.00000 0.00000 Wang, L.K. Lima, C.D. Shuman, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 65.300 91.800 67.900 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N S N 305 N O N 306 N O N 307 N O N 308 N O N 309 N N N 310 S C N 311 N C N 312 N O N 313 R C N 314 N O N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N N Y 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C N 364 N O N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 N C N 382 N C N 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N doub Y 326 N sing Y 327 N sing N 328 N sing Y 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N doub N 354 N sing Y 355 N doub N 356 N sing Y 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing UK EMBO J. EMJODG 0897 0261-4189 21 3873 3880 10.1093/emboj/cdf397 12110598 Structure and mechanism of T4 polynucleotide kinase: an RNA repair enzyme. 2002 10.2210/pdb1ly1/pdb pdb_00001ly1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2001-11-15 MARRESEARCH Si SINGLE WAVELENGTH M x-ray 1 0.9790 1.0 X9A NSLS 0.9790 SYNCHROTRON NSLS BEAMLINE X9A 20670.787 polynucleotide kinase 2.7.1.78 kinase domain, residues 1-181 1 man polymer 96.063 SULFATE ION 4 syn non-polymer 18.015 water 142 nat water PNK, Polynucleotide 5'-hydroxyl-kinase no no MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG VIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPK AVIFDVDGTLAKMNGRGPYDL MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG VIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPK AVIFDVDGTLAKMNGRGPYDL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n T4-like viruses Enterobacteria phage T4 sensu lato Escherichia Escherichia coli sample PSET 10665 Enterobacteria phage T4 469008 Escherichia coli BL21(DE3) BL21 DE3 PLASMID PET 1 2.46 50.01 VAPOR DIFFUSION, HANGING DROP 4.6 0.1M NaOAc 4.6, 5mM DTT, 16% PEG2000MME, 0.4M AMSO4, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-07-17 1 1 2008-04-28 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id HETEROGEN The sulfate ions mimic substrate nucleotide phosphates. RCSB Y RCSB 2002-06-06 REL REL SO4 SULFATE ION HOH water SO4 601 2 SO4 SO4 601 A SO4 602 2 SO4 SO4 602 A SO4 603 2 SO4 SO4 603 A SO4 604 2 SO4 SO4 604 A WAT 1 3 HOH HOH 605 A WAT 2 3 HOH HOH 606 A WAT 3 3 HOH HOH 607 A WAT 4 3 HOH HOH 608 A WAT 5 3 HOH HOH 609 A WAT 6 3 HOH HOH 610 A WAT 7 3 HOH HOH 611 A WAT 8 3 HOH HOH 612 A WAT 9 3 HOH HOH 613 A WAT 10 3 HOH HOH 614 A WAT 11 3 HOH HOH 615 A WAT 12 3 HOH HOH 616 A WAT 13 3 HOH HOH 617 A WAT 14 3 HOH HOH 618 A WAT 15 3 HOH HOH 619 A WAT 16 3 HOH HOH 620 A WAT 17 3 HOH HOH 621 A WAT 18 3 HOH HOH 622 A WAT 19 3 HOH HOH 623 A WAT 20 3 HOH HOH 624 A WAT 21 3 HOH HOH 625 A WAT 22 3 HOH HOH 626 A WAT 23 3 HOH HOH 627 A WAT 24 3 HOH HOH 628 A WAT 25 3 HOH HOH 629 A WAT 26 3 HOH HOH 630 A WAT 27 3 HOH HOH 631 A WAT 28 3 HOH HOH 632 A WAT 29 3 HOH HOH 633 A WAT 30 3 HOH HOH 634 A WAT 31 3 HOH HOH 635 A WAT 32 3 HOH HOH 636 A WAT 33 3 HOH HOH 637 A WAT 34 3 HOH HOH 638 A WAT 35 3 HOH HOH 639 A WAT 36 3 HOH HOH 640 A WAT 37 3 HOH HOH 641 A WAT 38 3 HOH HOH 642 A WAT 39 3 HOH HOH 643 A WAT 40 3 HOH HOH 644 A WAT 41 3 HOH HOH 645 A WAT 42 3 HOH HOH 646 A WAT 43 3 HOH HOH 647 A WAT 44 3 HOH HOH 648 A WAT 45 3 HOH HOH 649 A WAT 46 3 HOH HOH 650 A WAT 47 3 HOH HOH 651 A WAT 48 3 HOH HOH 652 A WAT 49 3 HOH HOH 653 A WAT 50 3 HOH HOH 654 A WAT 51 3 HOH HOH 655 A WAT 52 3 HOH HOH 656 A WAT 53 3 HOH HOH 657 A WAT 54 3 HOH HOH 658 A WAT 55 3 HOH HOH 659 A WAT 56 3 HOH HOH 660 A WAT 57 3 HOH HOH 661 A WAT 58 3 HOH HOH 662 A WAT 59 3 HOH HOH 663 A WAT 60 3 HOH HOH 664 A WAT 61 3 HOH HOH 665 A WAT 62 3 HOH HOH 666 A WAT 63 3 HOH HOH 667 A WAT 64 3 HOH HOH 668 A WAT 65 3 HOH HOH 669 A WAT 66 3 HOH HOH 670 A WAT 67 3 HOH HOH 671 A WAT 68 3 HOH HOH 672 A WAT 69 3 HOH HOH 673 A WAT 70 3 HOH HOH 674 A WAT 71 3 HOH HOH 675 A WAT 72 3 HOH HOH 676 A WAT 73 3 HOH HOH 677 A WAT 74 3 HOH HOH 678 A WAT 75 3 HOH HOH 679 A WAT 76 3 HOH HOH 680 A WAT 77 3 HOH HOH 681 A WAT 78 3 HOH HOH 682 A WAT 79 3 HOH HOH 683 A WAT 80 3 HOH HOH 684 A WAT 81 3 HOH HOH 685 A WAT 82 3 HOH HOH 686 A WAT 83 3 HOH HOH 687 A WAT 84 3 HOH HOH 688 A WAT 85 3 HOH HOH 689 A WAT 86 3 HOH HOH 690 A WAT 87 3 HOH HOH 691 A WAT 88 3 HOH HOH 692 A WAT 89 3 HOH HOH 693 A WAT 90 3 HOH HOH 694 A WAT 91 3 HOH HOH 695 A WAT 92 3 HOH HOH 696 A WAT 93 3 HOH HOH 697 A WAT 94 3 HOH HOH 698 A WAT 95 3 HOH HOH 699 A WAT 96 3 HOH HOH 700 A WAT 97 3 HOH HOH 701 A WAT 98 3 HOH HOH 702 A WAT 99 3 HOH HOH 703 A WAT 100 3 HOH HOH 704 A WAT 101 3 HOH HOH 705 A WAT 102 3 HOH HOH 706 A WAT 103 3 HOH HOH 707 A WAT 104 3 HOH HOH 708 A WAT 105 3 HOH HOH 709 A WAT 106 3 HOH HOH 710 A WAT 107 3 HOH HOH 711 A WAT 108 3 HOH HOH 712 A WAT 109 3 HOH HOH 713 A WAT 110 3 HOH HOH 714 A WAT 111 3 HOH HOH 715 A WAT 112 3 HOH HOH 716 A WAT 113 3 HOH HOH 717 A WAT 114 3 HOH HOH 718 A WAT 115 3 HOH HOH 719 A WAT 116 3 HOH HOH 720 A WAT 117 3 HOH HOH 721 A WAT 118 3 HOH HOH 722 A WAT 119 3 HOH HOH 723 A WAT 120 3 HOH HOH 724 A WAT 121 3 HOH HOH 725 A WAT 122 3 HOH HOH 726 A WAT 123 3 HOH HOH 727 A WAT 124 3 HOH HOH 728 A WAT 125 3 HOH HOH 729 A WAT 126 3 HOH HOH 730 A WAT 127 3 HOH HOH 731 A WAT 128 3 HOH HOH 732 A WAT 129 3 HOH HOH 733 A WAT 130 3 HOH HOH 734 A WAT 131 3 HOH HOH 735 A WAT 132 3 HOH HOH 736 A WAT 133 3 HOH HOH 737 A WAT 134 3 HOH HOH 738 A WAT 135 3 HOH HOH 739 A WAT 136 3 HOH HOH 740 A WAT 137 3 HOH HOH 741 A WAT 138 3 HOH HOH 742 A WAT 139 3 HOH HOH 743 A WAT 140 3 HOH HOH 744 A WAT 141 3 HOH HOH 745 A WAT 142 3 HOH HOH 746 A MET 1 n 1 MET 1 A LYS 2 n 2 LYS 2 A LYS 3 n 3 LYS 3 A ILE 4 n 4 ILE 4 A ILE 5 n 5 ILE 5 A LEU 6 n 6 LEU 6 A THR 7 n 7 THR 7 A ILE 8 n 8 ILE 8 A GLY 9 n 9 GLY 9 A CYS 10 n 10 CYS 10 A PRO 11 n 11 PRO 11 A GLY 12 n 12 GLY 12 A SER 13 n 13 SER 13 A GLY 14 n 14 GLY 14 A LYS 15 n 15 LYS 15 A SER 16 n 16 SER 16 A THR 17 n 17 THR 17 A TRP 18 n 18 TRP 18 A ALA 19 n 19 ALA 19 A ARG 20 n 20 ARG 20 A GLU 21 n 21 GLU 21 A PHE 22 n 22 PHE 22 A ILE 23 n 23 ILE 23 A ALA 24 n 24 ALA 24 A LYS 25 n 25 LYS 25 A ASN 26 n 26 ASN 26 A PRO 27 n 27 PRO 27 A GLY 28 n 28 GLY 28 A PHE 29 n 29 PHE 29 A TYR 30 n 30 TYR 30 A ASN 31 n 31 ASN 31 A ILE 32 n 32 ILE 32 A ASN 33 n 33 ASN 33 A ARG 34 n 34 ARG 34 A ASP 35 n 35 ASP 35 A ASP 36 n 36 ASP 36 A TYR 37 n 37 TYR 37 A ARG 38 n 38 ARG 38 A GLN 39 n 39 GLN 39 A SER 40 n 40 SER 40 A ILE 41 n 41 ILE 41 A MET 42 n 42 MET 42 A ALA 43 n 43 ALA 43 A HIS 44 n 44 HIS 44 A GLU 45 n 45 GLU 45 A GLU 46 n 46 GLU 46 A ARG 47 n 47 ARG 47 A ASP 48 n 48 ASP 48 A GLU 49 n 49 GLU 49 A TYR 50 n 50 TYR 50 A LYS 51 n 51 LYS 51 A TYR 52 n 52 TYR 52 A THR 53 n 53 THR 53 A LYS 54 n 54 LYS 54 A LYS 55 n 55 LYS 55 A LYS 56 n 56 LYS 56 A GLU 57 n 57 GLU 57 A GLY 58 n 58 GLY 58 A ILE 59 n 59 ILE 59 A VAL 60 n 60 VAL 60 A THR 61 n 61 THR 61 A GLY 62 n 62 GLY 62 A MET 63 n 63 MET 63 A GLN 64 n 64 GLN 64 A PHE 65 n 65 PHE 65 A ASP 66 n 66 ASP 66 A THR 67 n 67 THR 67 A ALA 68 n 68 ALA 68 A LYS 69 n 69 LYS 69 A SER 70 n 70 SER 70 A ILE 71 n 71 ILE 71 A LEU 72 n 72 LEU 72 A TYR 73 n 73 TYR 73 A GLY 74 n 74 GLY 74 A GLY 75 n 75 GLY 75 A ASP 76 n 76 ASP 76 A SER 77 n 77 SER 77 A VAL 78 n 78 VAL 78 A LYS 79 n 79 LYS 79 A GLY 80 n 80 GLY 80 A VAL 81 n 81 VAL 81 A ILE 82 n 82 ILE 82 A ILE 83 n 83 ILE 83 A SER 84 n 84 SER 84 A ASP 85 n 85 ASP 85 A THR 86 n 86 THR 86 A ASN 87 n 87 ASN 87 A LEU 88 n 88 LEU 88 A ASN 89 n 89 ASN 89 A PRO 90 n 90 PRO 90 A GLU 91 n 91 GLU 91 A ARG 92 n 92 ARG 92 A ARG 93 n 93 ARG 93 A LEU 94 n 94 LEU 94 A ALA 95 n 95 ALA 95 A TRP 96 n 96 TRP 96 A GLU 97 n 97 GLU 97 A THR 98 n 98 THR 98 A PHE 99 n 99 PHE 99 A ALA 100 n 100 ALA 100 A LYS 101 n 101 LYS 101 A GLU 102 n 102 GLU 102 A TYR 103 n 103 TYR 103 A GLY 104 n 104 GLY 104 A TRP 105 n 105 TRP 105 A LYS 106 n 106 LYS 106 A VAL 107 n 107 VAL 107 A GLU 108 n 108 GLU 108 A HIS 109 n 109 HIS 109 A LYS 110 n 110 LYS 110 A VAL 111 n 111 VAL 111 A PHE 112 n 112 PHE 112 A ASP 113 n 113 ASP 113 A VAL 114 n 114 VAL 114 A PRO 115 n 115 PRO 115 A TRP 116 n 116 TRP 116 A THR 117 n 117 THR 117 A GLU 118 n 118 GLU 118 A LEU 119 n 119 LEU 119 A VAL 120 n 120 VAL 120 A LYS 121 n 121 LYS 121 A ARG 122 n 122 ARG 122 A ASN 123 n 123 ASN 123 A SER 124 n 124 SER 124 A LYS 125 n 125 LYS 125 A ARG 126 n 126 ARG 126 A GLY 127 n 127 GLY 127 A THR 128 n 128 THR 128 A LYS 129 n 129 LYS 129 A ALA 130 n 130 ALA 130 A VAL 131 n 131 VAL 131 A PRO 132 n 132 PRO 132 A ILE 133 n 133 ILE 133 A ASP 134 n 134 ASP 134 A VAL 135 n 135 VAL 135 A LEU 136 n 136 LEU 136 A ARG 137 n 137 ARG 137 A SER 138 n 138 SER 138 A MET 139 n 139 MET 139 A TYR 140 n 140 TYR 140 A LYS 141 n 141 LYS 141 A SER 142 n 142 SER 142 A MET 143 n 143 MET 143 A ARG 144 n 144 ARG 144 A GLU 145 n 145 GLU 145 A TYR 146 n 146 TYR 146 A LEU 147 n 147 LEU 147 A GLY 148 n 148 GLY 148 A LEU 149 n 149 LEU 149 A PRO 150 n 150 PRO 150 A VAL 151 n 151 VAL 151 A TYR 152 n 152 TYR 152 A n 153 153 A n 154 154 A n 155 155 A n 156 156 A n 157 157 A n 158 158 A n 159 159 A n 160 160 A n 161 161 A n 162 162 A n 163 163 A n 164 164 A n 165 165 A n 166 166 A n 167 167 A n 168 168 A n 169 169 A n 170 170 A n 171 171 A n 172 172 A n 173 173 A n 174 174 A n 175 175 A n 176 176 A n 177 177 A n 178 178 A n 179 179 A n 180 180 A n 181 181 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_655 -x+1,y,-z+1/2 crystal symmetry operation 65.3000000000 0.0000000000 33.9500000000 A N TYR 30 A N TYR 30 A O ILE 82 A O ILE 82 A O ILE 83 A O ILE 83 A N ILE 5 A N ILE 5 A N ILE 4 A N ILE 4 A O LYS 106 A O LYS 106 1 A ASN 153 A ASN 153 1 Y 1 A GLY 154 A GLY 154 1 Y 1 A THR 155 A THR 155 1 Y 1 A PRO 156 A PRO 156 1 Y 1 A GLY 157 A GLY 157 1 Y 1 A LYS 158 A LYS 158 1 Y 1 A PRO 159 A PRO 159 1 Y 1 A LYS 160 A LYS 160 1 Y 1 A ALA 161 A ALA 161 1 Y 1 A VAL 162 A VAL 162 1 Y 1 A ILE 163 A ILE 163 1 Y 1 A PHE 164 A PHE 164 1 Y 1 A ASP 165 A ASP 165 1 Y 1 A VAL 166 A VAL 166 1 Y 1 A ASP 167 A ASP 167 1 Y 1 A GLY 168 A GLY 168 1 Y 1 A THR 169 A THR 169 1 Y 1 A LEU 170 A LEU 170 1 Y 1 A ALA 171 A ALA 171 1 Y 1 A LYS 172 A LYS 172 1 Y 1 A MET 173 A MET 173 1 Y 1 A ASN 174 A ASN 174 1 Y 1 A GLY 175 A GLY 175 1 Y 1 A ARG 176 A ARG 176 1 Y 1 A GLY 177 A GLY 177 1 Y 1 A PRO 178 A PRO 178 1 Y 1 A TYR 179 A TYR 179 1 Y 1 A ASP 180 A ASP 180 1 Y 1 A LEU 181 A LEU 181 1 Y 1 A TYR 52 -68.09 81.74 1 A SER 84 -70.20 40.64 1 A PHE 112 -117.91 79.79 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 34.4 3.36 0.00 0.00 3.89 0.00 -7.26 0.2310000 0.009 0.2100000 2.00 19.01 655 14121 13119 5.0 92.9 RANDOM 1 RESTRAINED THROUGHOUT 0.0 0.0 SIR Engh & Huber FLAT MODEL 52.5142 0.38958 0.27 0.22 2.00 19.01 142 1403 20 0 1241 0.006 1.0 20.4 0.66 0.97 1.50 1.64 2.00 1.29 2.00 2.00 2.50 0.2770000 0.029 0.2780000 2.13 90 1868 6 4.6 85.2 13.7 2.00 20.0 1LY1 14453 12892 0 0 0.0510000 1 15.3 89.2 0.2230000 2.00 2.06 4.3 77.7 phasing SOLVE refinement CNS 0.9 data reduction DENZO data scaling SCALEPACK Structure and Mechanism of T4 Polynucleotide Kinase 1 N N 2 N N 2 N N 2 N N 2 N N 3 N N A GLY 14 A GLY 14 HELX_P A ASN 26 A ASN 26 1 1 13 A ASN 33 A ASN 33 HELX_P A MET 42 A MET 42 1 2 10 A GLU 46 A GLU 46 HELX_P A TYR 50 A TYR 50 5 3 5 A THR 53 A THR 53 HELX_P A TYR 73 A TYR 73 1 4 21 A ASN 89 A ASN 89 HELX_P A GLY 104 A GLY 104 1 5 16 A PRO 115 A PRO 115 HELX_P A SER 124 A SER 124 1 6 10 A LYS 125 A LYS 125 HELX_P A ALA 130 A ALA 130 5 7 6 A PRO 132 A PRO 132 HELX_P A GLY 148 A GLY 148 1 8 17 TRANSFERASE PNK, KINASE, PHOSPHATASE, POLYNUCLEOTIDE, T4, PHAGE, TRANSFERASE KIPN_BPT4 UNP 1 1 P06855 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG VIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPK AVIFDVDGTLAKMNGRGPYDL 1 181 1LY1 1 181 P06855 A 1 1 181 4 parallel parallel parallel A PHE 29 A PHE 29 A ILE 32 A ILE 32 A GLY 80 A GLY 80 A ILE 83 A ILE 83 A LYS 3 A LYS 3 A ILE 8 A ILE 8 A LYS 106 A LYS 106 A VAL 111 A VAL 111 BINDING SITE FOR RESIDUE SO4 A 601 A SO4 601 Software 10 BINDING SITE FOR RESIDUE SO4 A 602 A SO4 602 Software 6 BINDING SITE FOR RESIDUE SO4 A 603 A SO4 603 Software 2 BINDING SITE FOR RESIDUE SO4 A 604 A SO4 604 Software 3 A CYS 10 A CYS 10 10 1_555 A PRO 11 A PRO 11 10 1_555 A GLY 12 A GLY 12 10 1_555 A SER 13 A SER 13 10 1_555 A GLY 14 A GLY 14 10 1_555 A LYS 15 A LYS 15 10 1_555 A SER 16 A SER 16 10 1_555 A ARG 126 A ARG 126 10 1_555 A HOH 623 F HOH 10 1_555 A HOH 658 F HOH 10 1_555 A ARG 34 A ARG 34 6 1_555 A ARG 38 A ARG 38 6 1_555 A ASP 85 A ASP 85 6 1_555 A THR 86 A THR 86 6 1_555 A HOH 608 F HOH 6 1_555 A HOH 609 F HOH 6 1_555 A GLU 108 A GLU 108 2 1_555 A HIS 109 A HIS 109 2 1_555 A ARG 93 A ARG 93 3 1_555 A GLU 97 A GLU 97 3 1_555 A HIS 109 A HIS 109 3 1_555 20 C 2 2 21