0.007943 0.004586 0.000000 0.000000 0.009172 0.000000 0.000000 0.000000 0.009606 0.00000 0.00000 0.00000 CIS PROLINE - PRO A 24 CIS PROLINE - PRO A 95 CIS PROLINE - PRO B 177 CIS PROLINE - PRO B 314 CIS PROLINE - PRO B 317 CIS PROLINE - PRO C 2 CIS PROLINE - PRO C 24 CIS PROLINE - PRO C 95 CIS PROLINE - PRO D 177 PRO D 313 - PRO D 314 OMEGA = 36.80 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION CIS PROLINE - PRO D 317 Baldwin, E.T. Bhat, T.N. Gulnik, S. Erickson, J.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 125.900 125.900 104.100 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H12 O6 180.156 beta-D-mannopyranose D-saccharide, beta linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C6 H12 O6 180.156 alpha-D-mannopyranose D-saccharide, alpha linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 90 6796 6800 10.1073/pnas.90.14.6796 8393577 Crystal structures of native and inhibited forms of human cathepsin D: implications for lysosomal targeting and drug design. 1993 UK J.Mol.Biol. JMOBAK 0070 0022-2836 227 265 Human Liver Cathepsin D. Purification, Crystallization and Preliminary X-Ray Diffraction Analysis of a Lysosomal Enzyme 1992 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 10688.941 CATHEPSIN D 3.4.23.5 2 nat polymer 26270.207 CATHEPSIN D 3.4.23.5 2 nat polymer 748.682 alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 2 man branched 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 2 man non-polymer 18.015 water 46 nat water no no GPIPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGS GSLSGYLSQDTVSVPCQ GPIPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGS GSLSGYLSQDTVSVPCQ A,C polypeptide(L) no no GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGG TDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGEYMIPC EKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEA A GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGG TDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGEYMIPC EKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEA A B,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 LIVER Homo sapiens LIVER human Homo sample 9606 LIVER Homo sapiens LIVER 3.22 61.80 pdbx_database_status struct_conf struct_conf_type atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen struct_asym struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Derived calculations Version format compliance Derived calculations Other Atomic model Data collection Derived calculations Structure summary 1 0 1994-01-31 1 1 2008-03-03 1 2 2011-07-13 1 3 2017-11-29 2 0 2020-07-29 _pdbx_database_status.process_site _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id A NAG 1 n E NAG 1 A NAG 2 n E NAG 2 A MAN 3 n E BMA 3 A MAN 8 n E MAN 4 C NAG 1 n F NAG 1 C NAG 2 n F NAG 2 C MAN 3 n F BMA 3 C MAN 8 n F MAN 4 DManpb b-D-mannopyranose b-D-Manp Man DManpa a-D-mannopyranose a-D-Manp Man DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc SHEET THERE ARE SEVERAL BIFURCATED SHEETS IN THIS STRUCTURE. THESE ARE REPRESENTED BY TWO SHEETS WHICH HAVE ONE OR MORE IDENTICAL STRANDS. SHEETS *1A1* AND *1B1* AND SHEETS *1A2* AND *1B2* REPRESENT ONE BIFURCATED SHEET IN EACH MOLECULE. SHEETS *2A1* AND *2B1* AND *2A2* AND *2B2* REPRESENT ONE BIFURCATED SHEET IN EACH MOLECULE. Y BNL 1993-04-22 REL oligosaccharide DManpa1-6DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3/a4-b1_b4-c1_c6-d1 3 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(6+1)][a-D-Manp]{}}}}} 3 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 3 O1 HO4 sing C1 O4 BMA NAG 3 2 3 O1 HO4 sing C1 O6 MAN BMA 4 3 3 O1 HO6 sing n n n n NAG 2-acetamido-2-deoxy-beta-D-glucopyranose HOH water NAG 1 4 NAG NAG 1 B NAG 1 4 NAG NAG 1 D HOH 1 5 HOH HOH 102 A HOH 2 5 HOH HOH 103 A HOH 3 5 HOH HOH 104 A HOH 4 5 HOH HOH 105 A HOH 5 5 HOH HOH 106 A HOH 6 5 HOH HOH 107 A HOH 9 5 HOH HOH 108 A HOH 10 5 HOH HOH 109 A HOH 11 5 HOH HOH 110 A HOH 28 5 HOH HOH 111 A HOH 1 5 HOH HOH 112 A HOH 12 5 HOH HOH 33 B HOH 13 5 HOH HOH 34 B HOH 15 5 HOH HOH 35 B HOH 21 5 HOH HOH 36 B HOH 22 5 HOH HOH 37 B HOH 24 5 HOH HOH 38 B HOH 25 5 HOH HOH 39 B HOH 26 5 HOH HOH 40 B HOH 29 5 HOH HOH 42 B HOH 118 5 HOH HOH 43 B HOH 120 5 HOH HOH 44 B HOH 122 5 HOH HOH 45 B HOH 3 5 HOH HOH 102 C HOH 4 5 HOH HOH 103 C HOH 5 5 HOH HOH 104 C HOH 6 5 HOH HOH 105 C HOH 9 5 HOH HOH 106 C HOH 10 5 HOH HOH 107 C HOH 11 5 HOH HOH 108 C HOH 28 5 HOH HOH 109 C HOH 1 5 HOH HOH 347 D HOH 2 5 HOH HOH 348 D HOH 12 5 HOH HOH 349 D HOH 13 5 HOH HOH 350 D HOH 15 5 HOH HOH 351 D HOH 21 5 HOH HOH 352 D HOH 22 5 HOH HOH 353 D HOH 24 5 HOH HOH 354 D HOH 25 5 HOH HOH 355 D HOH 26 5 HOH HOH 356 D HOH 29 5 HOH HOH 357 D HOH 118 5 HOH HOH 358 D HOH 120 5 HOH HOH 359 D HOH 122 5 HOH HOH 360 D HOH 1 5 HOH HOH 361 D GLY 1 n 1 GLY 1 A PRO 2 n 2 PRO 2 A ILE 3 n 3 ILE 3 A PRO 4 n 4 PRO 4 A GLU 5 n 5 GLU 5 A VAL 6 n 6 VAL 6 A LEU 7 n 7 LEU 7 A LYS 8 n 8 LYS 8 A ASN 9 n 9 ASN 9 A TYR 10 n 10 TYR 10 A MET 11 n 11 MET 11 A ASP 12 n 12 ASP 12 A ALA 13 n 13 ALA 13 A GLN 14 n 14 GLN 14 A TYR 15 n 15 TYR 15 A TYR 16 n 16 TYR 16 A GLY 17 n 17 GLY 17 A GLU 18 n 18 GLU 18 A ILE 19 n 19 ILE 19 A GLY 20 n 20 GLY 20 A ILE 21 n 21 ILE 21 A GLY 22 n 22 GLY 22 A THR 23 n 23 THR 23 A PRO 24 n 24 PRO 24 A PRO 25 n 25 PRO 25 A GLN 26 n 26 GLN 26 A CYS 27 n 27 CYS 27 A PHE 28 n 28 PHE 28 A THR 29 n 29 THR 29 A VAL 30 n 30 VAL 30 A VAL 31 n 31 VAL 31 A PHE 32 n 32 PHE 32 A ASP 33 n 33 ASP 33 A THR 34 n 34 THR 34 A GLY 35 n 35 GLY 35 A SER 36 n 36 SER 36 A SER 37 n 37 SER 37 A ASN 38 n 38 ASN 38 A LEU 39 n 39 LEU 39 A TRP 40 n 40 TRP 40 A VAL 41 n 41 VAL 41 A PRO 42 n 42 PRO 42 A SER 43 n 43 SER 43 A ILE 44 n 44 ILE 44 A HIS 45 n 45 HIS 45 A CYS 46 n 46 CYS 46 A LYS 47 n 47 LYS 47 A LEU 48 n 48 LEU 48 A LEU 49 n 49 LEU 49 A ASP 50 n 50 ASP 50 A ILE 51 n 51 ILE 51 A ALA 52 n 52 ALA 52 A CYS 53 n 53 CYS 53 A TRP 54 n 54 TRP 54 A ILE 55 n 55 ILE 55 A HIS 56 n 56 HIS 56 A HIS 57 n 57 HIS 57 A LYS 58 n 58 LYS 58 A TYR 59 n 59 TYR 59 A ASN 60 n 60 ASN 60 A SER 61 n 61 SER 61 A ASP 62 n 62 ASP 62 A LYS 63 n 63 LYS 63 A SER 64 n 64 SER 64 A SER 65 n 65 SER 65 A THR 66 n 66 THR 66 A TYR 67 n 67 TYR 67 A VAL 68 n 68 VAL 68 A LYS 69 n 69 LYS 69 A ASN 70 n 70 ASN 70 A GLY 71 n 71 GLY 71 A THR 72 n 72 THR 72 A SER 73 n 73 SER 73 A PHE 74 n 74 PHE 74 A ASP 75 n 75 ASP 75 A ILE 76 n 76 ILE 76 A HIS 77 n 77 HIS 77 A TYR 78 n 78 TYR 78 A GLY 79 n 79 GLY 79 A SER 80 n 80 SER 80 A GLY 81 n 81 GLY 81 A SER 82 n 82 SER 82 A LEU 83 n 83 LEU 83 A SER 84 n 84 SER 84 A GLY 85 n 85 GLY 85 A TYR 86 n 86 TYR 86 A LEU 87 n 87 LEU 87 A SER 88 n 88 SER 88 A GLN 89 n 89 GLN 89 A ASP 90 n 90 ASP 90 A THR 91 n 91 THR 91 A VAL 92 n 92 VAL 92 A SER 93 n 93 SER 93 A VAL 94 n 94 VAL 94 A PRO 95 n 95 PRO 95 A CYS 96 n 96 CYS 96 A GLN 97 n 97 GLN 97 A GLY 106 n 1 GLY 106 B GLY 107 n 2 GLY 107 B VAL 108 n 3 VAL 108 B LYS 109 n 4 LYS 109 B VAL 110 n 5 VAL 110 B GLU 111 n 6 GLU 111 B ARG 112 n 7 ARG 112 B GLN 113 n 8 GLN 113 B VAL 114 n 9 VAL 114 B PHE 115 n 10 PHE 115 B GLY 116 n 11 GLY 116 B GLU 117 n 12 GLU 117 B ALA 118 n 13 ALA 118 B THR 119 n 14 THR 119 B LYS 120 n 15 LYS 120 B GLN 121 n 16 GLN 121 B PRO 122 n 17 PRO 122 B GLY 123 n 18 GLY 123 B ILE 124 n 19 ILE 124 B THR 125 n 20 THR 125 B PHE 126 n 21 PHE 126 B ILE 127 n 22 ILE 127 B ALA 128 n 23 ALA 128 B ALA 129 n 24 ALA 129 B LYS 130 n 25 LYS 130 B PHE 131 n 26 PHE 131 B ASP 132 n 27 ASP 132 B GLY 133 n 28 GLY 133 B ILE 134 n 29 ILE 134 B LEU 135 n 30 LEU 135 B GLY 136 n 31 GLY 136 B MET 137 n 32 MET 137 B ALA 138 n 33 ALA 138 B TYR 139 n 34 TYR 139 B PRO 140 n 35 PRO 140 B ARG 141 n 36 ARG 141 B ILE 142 n 37 ILE 142 B SER 143 n 38 SER 143 B VAL 144 n 39 VAL 144 B ASN 145 n 40 ASN 145 B ASN 146 n 41 ASN 146 B VAL 147 n 42 VAL 147 B LEU 148 n 43 LEU 148 B PRO 149 n 44 PRO 149 B VAL 150 n 45 VAL 150 B PHE 151 n 46 PHE 151 B ASP 152 n 47 ASP 152 B ASN 153 n 48 ASN 153 B LEU 154 n 49 LEU 154 B MET 155 n 50 MET 155 B GLN 156 n 51 GLN 156 B GLN 157 n 52 GLN 157 B LYS 158 n 53 LYS 158 B LEU 159 n 54 LEU 159 B VAL 160 n 55 VAL 160 B ASP 161 n 56 ASP 161 B GLN 162 n 57 GLN 162 B ASN 163 n 58 ASN 163 B ILE 164 n 59 ILE 164 B PHE 165 n 60 PHE 165 B SER 166 n 61 SER 166 B PHE 167 n 62 PHE 167 B TYR 168 n 63 TYR 168 B LEU 169 n 64 LEU 169 B SER 170 n 65 SER 170 B ARG 171 n 66 ARG 171 B ASP 172 n 67 ASP 172 B PRO 173 n 68 PRO 173 B ASP 174 n 69 ASP 174 B ALA 175 n 70 ALA 175 B GLN 176 n 71 GLN 176 B PRO 177 n 72 PRO 177 B GLY 178 n 73 GLY 178 B GLY 179 n 74 GLY 179 B GLU 180 n 75 GLU 180 B LEU 181 n 76 LEU 181 B MET 182 n 77 MET 182 B LEU 183 n 78 LEU 183 B GLY 184 n 79 GLY 184 B GLY 185 n 80 GLY 185 B THR 186 n 81 THR 186 B ASP 187 n 82 ASP 187 B SER 188 n 83 SER 188 B LYS 189 n 84 LYS 189 B TYR 190 n 85 TYR 190 B TYR 191 n 86 TYR 191 B LYS 192 n 87 LYS 192 B GLY 193 n 88 GLY 193 B SER 194 n 89 SER 194 B LEU 195 n 90 LEU 195 B SER 196 n 91 SER 196 B TYR 197 n 92 TYR 197 B LEU 198 n 93 LEU 198 B ASN 199 n 94 ASN 199 B VAL 200 n 95 VAL 200 B THR 201 n 96 THR 201 B ARG 202 n 97 ARG 202 B LYS 203 n 98 LYS 203 B ALA 204 n 99 ALA 204 B TYR 205 n 100 TYR 205 B TRP 206 n 101 TRP 206 B GLN 207 n 102 GLN 207 B VAL 208 n 103 VAL 208 B HIS 209 n 104 HIS 209 B LEU 210 n 105 LEU 210 B ASP 211 n 106 ASP 211 B GLN 212 n 107 GLN 212 B VAL 213 n 108 VAL 213 B GLU 214 n 109 GLU 214 B VAL 215 n 110 VAL 215 B ALA 216 n 111 ALA 216 B SER 217 n 112 SER 217 B GLY 218 n 113 GLY 218 B LEU 219 n 114 LEU 219 B THR 220 n 115 THR 220 B LEU 221 n 116 LEU 221 B CYS 222 n 117 CYS 222 B LYS 223 n 118 LYS 223 B GLU 224 n 119 GLU 224 B GLY 225 n 120 GLY 225 B CYS 226 n 121 CYS 226 B GLU 227 n 122 GLU 227 B ALA 228 n 123 ALA 228 B ILE 229 n 124 ILE 229 B VAL 230 n 125 VAL 230 B ASP 231 n 126 ASP 231 B THR 232 n 127 THR 232 B GLY 233 n 128 GLY 233 B THR 234 n 129 THR 234 B SER 235 n 130 SER 235 B LEU 236 n 131 LEU 236 B MET 237 n 132 MET 237 B VAL 238 n 133 VAL 238 B GLY 239 n 134 GLY 239 B PRO 240 n 135 PRO 240 B VAL 241 n 136 VAL 241 B ASP 242 n 137 ASP 242 B GLU 243 n 138 GLU 243 B VAL 244 n 139 VAL 244 B ARG 245 n 140 ARG 245 B GLU 246 n 141 GLU 246 B LEU 247 n 142 LEU 247 B GLN 248 n 143 GLN 248 B LYS 249 n 144 LYS 249 B ALA 250 n 145 ALA 250 B ILE 251 n 146 ILE 251 B GLY 252 n 147 GLY 252 B ALA 253 n 148 ALA 253 B VAL 254 n 149 VAL 254 B PRO 255 n 150 PRO 255 B LEU 256 n 151 LEU 256 B ILE 257 n 152 ILE 257 B GLN 258 n 153 GLN 258 B GLY 259 n 154 GLY 259 B GLU 260 n 155 GLU 260 B TYR 261 n 156 TYR 261 B MET 262 n 157 MET 262 B ILE 263 n 158 ILE 263 B PRO 264 n 159 PRO 264 B CYS 265 n 160 CYS 265 B GLU 266 n 161 GLU 266 B LYS 267 n 162 LYS 267 B VAL 268 n 163 VAL 268 B SER 269 n 164 SER 269 B THR 270 n 165 THR 270 B LEU 271 n 166 LEU 271 B PRO 272 n 167 PRO 272 B ALA 273 n 168 ALA 273 B ILE 274 n 169 ILE 274 B THR 275 n 170 THR 275 B LEU 276 n 171 LEU 276 B LYS 277 n 172 LYS 277 B LEU 278 n 173 LEU 278 B GLY 279 n 174 GLY 279 B GLY 280 n 175 GLY 280 B LYS 281 n 176 LYS 281 B GLY 282 n 177 GLY 282 B TYR 283 n 178 TYR 283 B LYS 284 n 179 LYS 284 B LEU 285 n 180 LEU 285 B SER 286 n 181 SER 286 B PRO 287 n 182 PRO 287 B GLU 288 n 183 GLU 288 B ASP 289 n 184 ASP 289 B TYR 290 n 185 TYR 290 B THR 291 n 186 THR 291 B LEU 292 n 187 LEU 292 B LYS 293 n 188 LYS 293 B VAL 294 n 189 VAL 294 B SER 295 n 190 SER 295 B GLN 296 n 191 GLN 296 B ALA 297 n 192 ALA 297 B GLY 298 n 193 GLY 298 B LYS 299 n 194 LYS 299 B THR 300 n 195 THR 300 B LEU 301 n 196 LEU 301 B CYS 302 n 197 CYS 302 B LEU 303 n 198 LEU 303 B SER 304 n 199 SER 304 B GLY 305 n 200 GLY 305 B PHE 306 n 201 PHE 306 B MET 307 n 202 MET 307 B GLY 308 n 203 GLY 308 B MET 309 n 204 MET 309 B ASP 310 n 205 ASP 310 B ILE 311 n 206 ILE 311 B PRO 312 n 207 PRO 312 B PRO 313 n 208 PRO 313 B PRO 314 n 209 PRO 314 B SER 315 n 210 SER 315 B GLY 316 n 211 GLY 316 B PRO 317 n 212 PRO 317 B LEU 318 n 213 LEU 318 B TRP 319 n 214 TRP 319 B ILE 320 n 215 ILE 320 B LEU 321 n 216 LEU 321 B GLY 322 n 217 GLY 322 B ASP 323 n 218 ASP 323 B VAL 324 n 219 VAL 324 B PHE 325 n 220 PHE 325 B ILE 326 n 221 ILE 326 B GLY 327 n 222 GLY 327 B ARG 328 n 223 ARG 328 B TYR 329 n 224 TYR 329 B TYR 330 n 225 TYR 330 B THR 331 n 226 THR 331 B VAL 332 n 227 VAL 332 B PHE 333 n 228 PHE 333 B ASP 334 n 229 ASP 334 B ARG 335 n 230 ARG 335 B ASP 336 n 231 ASP 336 B ASN 337 n 232 ASN 337 B ASN 338 n 233 ASN 338 B ARG 339 n 234 ARG 339 B VAL 340 n 235 VAL 340 B GLY 341 n 236 GLY 341 B PHE 342 n 237 PHE 342 B ALA 343 n 238 ALA 343 B GLU 344 n 239 GLU 344 B ALA 345 n 240 ALA 345 B ALA 346 n 241 ALA 346 B GLY 1 n 1 GLY 1 C PRO 2 n 2 PRO 2 C ILE 3 n 3 ILE 3 C PRO 4 n 4 PRO 4 C GLU 5 n 5 GLU 5 C VAL 6 n 6 VAL 6 C LEU 7 n 7 LEU 7 C LYS 8 n 8 LYS 8 C ASN 9 n 9 ASN 9 C TYR 10 n 10 TYR 10 C MET 11 n 11 MET 11 C ASP 12 n 12 ASP 12 C ALA 13 n 13 ALA 13 C GLN 14 n 14 GLN 14 C TYR 15 n 15 TYR 15 C TYR 16 n 16 TYR 16 C GLY 17 n 17 GLY 17 C GLU 18 n 18 GLU 18 C ILE 19 n 19 ILE 19 C GLY 20 n 20 GLY 20 C ILE 21 n 21 ILE 21 C GLY 22 n 22 GLY 22 C THR 23 n 23 THR 23 C PRO 24 n 24 PRO 24 C PRO 25 n 25 PRO 25 C GLN 26 n 26 GLN 26 C CYS 27 n 27 CYS 27 C PHE 28 n 28 PHE 28 C THR 29 n 29 THR 29 C VAL 30 n 30 VAL 30 C VAL 31 n 31 VAL 31 C PHE 32 n 32 PHE 32 C ASP 33 n 33 ASP 33 C THR 34 n 34 THR 34 C GLY 35 n 35 GLY 35 C SER 36 n 36 SER 36 C SER 37 n 37 SER 37 C ASN 38 n 38 ASN 38 C LEU 39 n 39 LEU 39 C TRP 40 n 40 TRP 40 C VAL 41 n 41 VAL 41 C PRO 42 n 42 PRO 42 C SER 43 n 43 SER 43 C ILE 44 n 44 ILE 44 C HIS 45 n 45 HIS 45 C CYS 46 n 46 CYS 46 C LYS 47 n 47 LYS 47 C LEU 48 n 48 LEU 48 C LEU 49 n 49 LEU 49 C ASP 50 n 50 ASP 50 C ILE 51 n 51 ILE 51 C ALA 52 n 52 ALA 52 C CYS 53 n 53 CYS 53 C TRP 54 n 54 TRP 54 C ILE 55 n 55 ILE 55 C HIS 56 n 56 HIS 56 C HIS 57 n 57 HIS 57 C LYS 58 n 58 LYS 58 C TYR 59 n 59 TYR 59 C ASN 60 n 60 ASN 60 C SER 61 n 61 SER 61 C ASP 62 n 62 ASP 62 C LYS 63 n 63 LYS 63 C SER 64 n 64 SER 64 C SER 65 n 65 SER 65 C THR 66 n 66 THR 66 C TYR 67 n 67 TYR 67 C VAL 68 n 68 VAL 68 C LYS 69 n 69 LYS 69 C ASN 70 n 70 ASN 70 C GLY 71 n 71 GLY 71 C THR 72 n 72 THR 72 C SER 73 n 73 SER 73 C PHE 74 n 74 PHE 74 C ASP 75 n 75 ASP 75 C ILE 76 n 76 ILE 76 C HIS 77 n 77 HIS 77 C TYR 78 n 78 TYR 78 C GLY 79 n 79 GLY 79 C SER 80 n 80 SER 80 C GLY 81 n 81 GLY 81 C SER 82 n 82 SER 82 C LEU 83 n 83 LEU 83 C SER 84 n 84 SER 84 C GLY 85 n 85 GLY 85 C TYR 86 n 86 TYR 86 C LEU 87 n 87 LEU 87 C SER 88 n 88 SER 88 C GLN 89 n 89 GLN 89 C ASP 90 n 90 ASP 90 C THR 91 n 91 THR 91 C VAL 92 n 92 VAL 92 C SER 93 n 93 SER 93 C VAL 94 n 94 VAL 94 C PRO 95 n 95 PRO 95 C CYS 96 n 96 CYS 96 C GLN 97 n 97 GLN 97 C GLY 106 n 1 GLY 106 D GLY 107 n 2 GLY 107 D VAL 108 n 3 VAL 108 D LYS 109 n 4 LYS 109 D VAL 110 n 5 VAL 110 D GLU 111 n 6 GLU 111 D ARG 112 n 7 ARG 112 D GLN 113 n 8 GLN 113 D VAL 114 n 9 VAL 114 D PHE 115 n 10 PHE 115 D GLY 116 n 11 GLY 116 D GLU 117 n 12 GLU 117 D ALA 118 n 13 ALA 118 D THR 119 n 14 THR 119 D LYS 120 n 15 LYS 120 D GLN 121 n 16 GLN 121 D PRO 122 n 17 PRO 122 D GLY 123 n 18 GLY 123 D ILE 124 n 19 ILE 124 D THR 125 n 20 THR 125 D PHE 126 n 21 PHE 126 D ILE 127 n 22 ILE 127 D ALA 128 n 23 ALA 128 D ALA 129 n 24 ALA 129 D LYS 130 n 25 LYS 130 D PHE 131 n 26 PHE 131 D ASP 132 n 27 ASP 132 D GLY 133 n 28 GLY 133 D ILE 134 n 29 ILE 134 D LEU 135 n 30 LEU 135 D GLY 136 n 31 GLY 136 D MET 137 n 32 MET 137 D ALA 138 n 33 ALA 138 D TYR 139 n 34 TYR 139 D PRO 140 n 35 PRO 140 D ARG 141 n 36 ARG 141 D ILE 142 n 37 ILE 142 D SER 143 n 38 SER 143 D VAL 144 n 39 VAL 144 D ASN 145 n 40 ASN 145 D ASN 146 n 41 ASN 146 D VAL 147 n 42 VAL 147 D LEU 148 n 43 LEU 148 D PRO 149 n 44 PRO 149 D VAL 150 n 45 VAL 150 D PHE 151 n 46 PHE 151 D ASP 152 n 47 ASP 152 D ASN 153 n 48 ASN 153 D LEU 154 n 49 LEU 154 D MET 155 n 50 MET 155 D GLN 156 n 51 GLN 156 D GLN 157 n 52 GLN 157 D LYS 158 n 53 LYS 158 D LEU 159 n 54 LEU 159 D VAL 160 n 55 VAL 160 D ASP 161 n 56 ASP 161 D GLN 162 n 57 GLN 162 D ASN 163 n 58 ASN 163 D ILE 164 n 59 ILE 164 D PHE 165 n 60 PHE 165 D SER 166 n 61 SER 166 D PHE 167 n 62 PHE 167 D TYR 168 n 63 TYR 168 D LEU 169 n 64 LEU 169 D SER 170 n 65 SER 170 D ARG 171 n 66 ARG 171 D ASP 172 n 67 ASP 172 D PRO 173 n 68 PRO 173 D ASP 174 n 69 ASP 174 D ALA 175 n 70 ALA 175 D GLN 176 n 71 GLN 176 D PRO 177 n 72 PRO 177 D GLY 178 n 73 GLY 178 D GLY 179 n 74 GLY 179 D GLU 180 n 75 GLU 180 D LEU 181 n 76 LEU 181 D MET 182 n 77 MET 182 D LEU 183 n 78 LEU 183 D GLY 184 n 79 GLY 184 D GLY 185 n 80 GLY 185 D THR 186 n 81 THR 186 D ASP 187 n 82 ASP 187 D SER 188 n 83 SER 188 D LYS 189 n 84 LYS 189 D TYR 190 n 85 TYR 190 D TYR 191 n 86 TYR 191 D LYS 192 n 87 LYS 192 D GLY 193 n 88 GLY 193 D SER 194 n 89 SER 194 D LEU 195 n 90 LEU 195 D SER 196 n 91 SER 196 D TYR 197 n 92 TYR 197 D LEU 198 n 93 LEU 198 D ASN 199 n 94 ASN 199 D VAL 200 n 95 VAL 200 D THR 201 n 96 THR 201 D ARG 202 n 97 ARG 202 D LYS 203 n 98 LYS 203 D ALA 204 n 99 ALA 204 D TYR 205 n 100 TYR 205 D TRP 206 n 101 TRP 206 D GLN 207 n 102 GLN 207 D VAL 208 n 103 VAL 208 D HIS 209 n 104 HIS 209 D LEU 210 n 105 LEU 210 D ASP 211 n 106 ASP 211 D GLN 212 n 107 GLN 212 D VAL 213 n 108 VAL 213 D GLU 214 n 109 GLU 214 D VAL 215 n 110 VAL 215 D ALA 216 n 111 ALA 216 D SER 217 n 112 SER 217 D GLY 218 n 113 GLY 218 D LEU 219 n 114 LEU 219 D THR 220 n 115 THR 220 D LEU 221 n 116 LEU 221 D CYS 222 n 117 CYS 222 D LYS 223 n 118 LYS 223 D GLU 224 n 119 GLU 224 D GLY 225 n 120 GLY 225 D CYS 226 n 121 CYS 226 D GLU 227 n 122 GLU 227 D ALA 228 n 123 ALA 228 D ILE 229 n 124 ILE 229 D VAL 230 n 125 VAL 230 D ASP 231 n 126 ASP 231 D THR 232 n 127 THR 232 D GLY 233 n 128 GLY 233 D THR 234 n 129 THR 234 D SER 235 n 130 SER 235 D LEU 236 n 131 LEU 236 D MET 237 n 132 MET 237 D VAL 238 n 133 VAL 238 D GLY 239 n 134 GLY 239 D PRO 240 n 135 PRO 240 D VAL 241 n 136 VAL 241 D ASP 242 n 137 ASP 242 D GLU 243 n 138 GLU 243 D VAL 244 n 139 VAL 244 D ARG 245 n 140 ARG 245 D GLU 246 n 141 GLU 246 D LEU 247 n 142 LEU 247 D GLN 248 n 143 GLN 248 D LYS 249 n 144 LYS 249 D ALA 250 n 145 ALA 250 D ILE 251 n 146 ILE 251 D GLY 252 n 147 GLY 252 D ALA 253 n 148 ALA 253 D VAL 254 n 149 VAL 254 D PRO 255 n 150 PRO 255 D LEU 256 n 151 LEU 256 D ILE 257 n 152 ILE 257 D GLN 258 n 153 GLN 258 D GLY 259 n 154 GLY 259 D GLU 260 n 155 GLU 260 D TYR 261 n 156 TYR 261 D MET 262 n 157 MET 262 D ILE 263 n 158 ILE 263 D PRO 264 n 159 PRO 264 D CYS 265 n 160 CYS 265 D GLU 266 n 161 GLU 266 D LYS 267 n 162 LYS 267 D VAL 268 n 163 VAL 268 D SER 269 n 164 SER 269 D THR 270 n 165 THR 270 D LEU 271 n 166 LEU 271 D PRO 272 n 167 PRO 272 D ALA 273 n 168 ALA 273 D ILE 274 n 169 ILE 274 D THR 275 n 170 THR 275 D LEU 276 n 171 LEU 276 D LYS 277 n 172 LYS 277 D LEU 278 n 173 LEU 278 D GLY 279 n 174 GLY 279 D GLY 280 n 175 GLY 280 D LYS 281 n 176 LYS 281 D GLY 282 n 177 GLY 282 D TYR 283 n 178 TYR 283 D LYS 284 n 179 LYS 284 D LEU 285 n 180 LEU 285 D SER 286 n 181 SER 286 D PRO 287 n 182 PRO 287 D GLU 288 n 183 GLU 288 D ASP 289 n 184 ASP 289 D TYR 290 n 185 TYR 290 D THR 291 n 186 THR 291 D LEU 292 n 187 LEU 292 D LYS 293 n 188 LYS 293 D VAL 294 n 189 VAL 294 D SER 295 n 190 SER 295 D GLN 296 n 191 GLN 296 D ALA 297 n 192 ALA 297 D GLY 298 n 193 GLY 298 D LYS 299 n 194 LYS 299 D THR 300 n 195 THR 300 D LEU 301 n 196 LEU 301 D CYS 302 n 197 CYS 302 D LEU 303 n 198 LEU 303 D SER 304 n 199 SER 304 D GLY 305 n 200 GLY 305 D PHE 306 n 201 PHE 306 D MET 307 n 202 MET 307 D GLY 308 n 203 GLY 308 D MET 309 n 204 MET 309 D ASP 310 n 205 ASP 310 D ILE 311 n 206 ILE 311 D PRO 312 n 207 PRO 312 D PRO 313 n 208 PRO 313 D PRO 314 n 209 PRO 314 D SER 315 n 210 SER 315 D GLY 316 n 211 GLY 316 D PRO 317 n 212 PRO 317 D LEU 318 n 213 LEU 318 D TRP 319 n 214 TRP 319 D ILE 320 n 215 ILE 320 D LEU 321 n 216 LEU 321 D GLY 322 n 217 GLY 322 D ASP 323 n 218 ASP 323 D VAL 324 n 219 VAL 324 D PHE 325 n 220 PHE 325 D ILE 326 n 221 ILE 326 D GLY 327 n 222 GLY 327 D ARG 328 n 223 ARG 328 D TYR 329 n 224 TYR 329 D TYR 330 n 225 TYR 330 D THR 331 n 226 THR 331 D VAL 332 n 227 VAL 332 D PHE 333 n 228 PHE 333 D ASP 334 n 229 ASP 334 D ARG 335 n 230 ARG 335 D ASP 336 n 231 ASP 336 D ASN 337 n 232 ASN 337 D ASN 338 n 233 ASN 338 D ARG 339 n 234 ARG 339 D VAL 340 n 235 VAL 340 D GLY 341 n 236 GLY 341 D PHE 342 n 237 PHE 342 D ALA 343 n 238 ALA 343 D GLU 344 n 239 GLU 344 D ALA 345 n 240 ALA 345 D ALA 346 n 241 ALA 346 D author_defined_assembly 4 tetrameric software_defined_assembly PISA 4 tetrameric 17840 -66 26780 A ASN 70 GLYCOSYLATION SITE A ASN 70 ASN B ASN 199 GLYCOSYLATION SITE B ASN 94 ASN C ASN 70 GLYCOSYLATION SITE C ASN 70 ASN D ASN 199 GLYCOSYLATION SITE D ASN 94 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_664 -y+1,x-y+1,z-1/3 crystal symmetry operation 62.9500000000 109.0325983365 -34.7000000000 1 A CG GLN 97 A CG GLN 97 1 Y 1 A CD GLN 97 A CD GLN 97 1 Y 1 A OE1 GLN 97 A OE1 GLN 97 1 Y 1 A NE2 GLN 97 A NE2 GLN 97 1 Y 1 C CG GLN 97 C CG GLN 97 1 Y 1 C CD GLN 97 C CD GLN 97 1 Y 1 C OE1 GLN 97 C OE1 GLN 97 1 Y 1 C NE2 GLN 97 C NE2 GLN 97 1 Y 1 C C HD22 HZ2 ASN LYS 60 63 1.28 1 C D HH HH21 TYR ARG 15 171 1.33 1 D D PRO PRO 313 314 36.80 1 7.29 0.80 106.30 113.59 A A A CD1 CG CD2 TRP TRP TRP 40 40 40 N 1 -8.19 1.30 127.00 118.81 A A A CB CG CD1 TRP TRP TRP 40 40 40 N 1 -6.26 0.80 107.30 101.04 A A A CE2 CD2 CG TRP TRP TRP 40 40 40 N 1 5.54 0.90 133.90 139.44 A A A CG CD2 CE3 TRP TRP TRP 40 40 40 N 1 6.79 0.80 106.30 113.09 A A A CD1 CG CD2 TRP TRP TRP 54 54 54 N 1 -6.01 1.00 110.10 104.09 A A A CG CD1 NE1 TRP TRP TRP 54 54 54 N 1 -5.40 0.80 107.30 101.90 A A A CE2 CD2 CG TRP TRP TRP 54 54 54 N 1 -4.13 0.60 121.00 116.87 A A A CB CG CD2 TYR TYR TYR 59 59 59 N 1 6.40 0.80 106.30 112.70 B B B CD1 CG CD2 TRP TRP TRP 206 206 206 N 1 -5.24 0.80 107.30 102.06 B B B CE2 CD2 CG TRP TRP TRP 206 206 206 N 1 14.81 2.30 115.30 130.11 B B B CA CB CG LEU LEU LEU 247 247 247 N 1 -20.59 2.70 111.00 90.41 B B B N CA C ALA ALA ALA 297 297 297 N 1 6.40 0.80 106.30 112.70 B B B CD1 CG CD2 TRP TRP TRP 319 319 319 N 1 -5.49 0.80 107.30 101.81 B B B CE2 CD2 CG TRP TRP TRP 319 319 319 N 1 3.11 0.50 120.30 123.41 B B B NE CZ NH1 ARG ARG ARG 335 335 335 N 1 -3.89 0.50 120.30 116.41 B B B NE CZ NH2 ARG ARG ARG 339 339 339 N 1 6.68 0.80 106.30 112.98 C C C CD1 CG CD2 TRP TRP TRP 40 40 40 N 1 -5.86 0.80 107.30 101.44 C C C CE2 CD2 CG TRP TRP TRP 40 40 40 N 1 6.20 0.80 106.30 112.50 C C C CD1 CG CD2 TRP TRP TRP 54 54 54 N 1 -5.46 0.80 107.30 101.84 C C C CE2 CD2 CG TRP TRP TRP 54 54 54 N 1 20.02 2.30 115.30 135.32 C C C CA CB CG LEU LEU LEU 83 83 83 N 1 3.08 0.50 120.30 123.38 D D D NE CZ NH1 ARG ARG ARG 112 112 112 N 1 -11.62 1.70 113.30 101.68 D D D CA CB CG MET MET MET 182 182 182 N 1 6.05 0.80 106.30 112.35 D D D CD1 CG CD2 TRP TRP TRP 206 206 206 N 1 -5.50 0.80 107.30 101.80 D D D CE2 CD2 CG TRP TRP TRP 206 206 206 N 1 -10.85 1.60 100.20 89.35 D D D CG SD CE MET MET MET 237 237 237 N 1 6.58 0.80 106.30 112.88 D D D CD1 CG CD2 TRP TRP TRP 319 319 319 N 1 -5.69 0.80 107.30 101.61 D D D CE2 CD2 CG TRP TRP TRP 319 319 319 N 1 A A NE2 CD2 HIS HIS 45 45 -0.068 0.011 1.373 1.305 N 1 A A NE2 CD2 HIS HIS 56 56 -0.072 0.011 1.373 1.301 N 1 A A NE2 CD2 HIS HIS 57 57 -0.072 0.011 1.373 1.301 N 1 C C NE2 CD2 HIS HIS 45 45 -0.068 0.011 1.373 1.305 N 1 C C NE2 CD2 HIS HIS 56 56 -0.066 0.011 1.373 1.307 N 1 C C NE2 CD2 HIS HIS 57 57 -0.070 0.011 1.373 1.303 N 1 A ASP 12 58.36 18.67 1 A HIS 45 -98.82 31.17 1 A ASN 70 -135.82 -50.09 1 A SER 80 168.20 -76.01 1 A PRO 95 -66.04 -143.14 1 B THR 201 -83.69 -79.05 1 B ALA 204 -144.25 -67.05 1 B ALA 216 -45.61 -18.20 1 B CYS 222 49.60 28.85 1 B GLU 224 107.20 -18.10 1 B LEU 256 -94.55 -71.58 1 B ILE 257 -171.95 143.60 1 B GLN 296 -159.24 -55.63 1 B ALA 297 -89.09 -71.12 1 B LYS 299 52.39 -170.96 1 B THR 300 54.82 -6.50 1 C ASN 70 -126.69 -77.35 1 C SER 80 178.09 -89.03 1 C PRO 95 -67.71 -177.29 1 D ASP 174 -165.74 -38.94 1 D ALA 204 -124.24 -68.10 1 D ALA 216 -35.75 -35.83 1 D GLU 224 72.00 -24.20 1 D LEU 256 -102.07 -82.30 1 D GLN 258 35.95 74.76 1 D ALA 297 62.73 -137.70 THERE ARE TWO N-LINKED OLIGOSACCHARIDES ATTACHED AT RESIDUES ASN 70 AND ASN 199 OF EACH MOLECULE. FOUR SUGARS WERE INCLUDED FOR REFINEMENT AT ASN 70 AND A SINGLE N-LINKED NAG AT ASN 199. THE SUGARS ARE LINKED AS FOLLOWS: ASN A 70 -- NAG A 1 -- NAG A 2 -- MAN A 3 -- MAN A 8 ASN B 199 -- NAG B 1 ASN C 70 -- NAG C 1 -- NAG C 2 -- MAN C 3 -- MAN C 8 ASN D 199 -- NAG D 1 0.188 0.188 2.5 10.0 28077 1 2.5 10.0 46 5360 128 0 5186 0.012 3.10 model building X-PLOR 3.0 refinement X-PLOR 3.0 phasing X-PLOR 3.0 CATHEPSIN D (E.C.3.4.23.5) CRYSTAL STRUCTURES OF NATIVE AND INHIBITED FORMS OF HUMAN CATHEPSIN D: IMPLICATIONS FOR LYSOSOMAL TARGETING AND DRUG DESIGN 1 N N 2 N N 1 N N 2 N N 3 N N 3 N N 4 N N 4 N N 5 N N 5 N N 5 N N 5 N N THE TRANSFORMATION PRESENTED ON *MTRIX* RECORDS BELOW WILL YIELD APPROXIMATE COORDINATES FOR CHAINS *A* AND *B* WHEN APPLIED TO CHAINS *C* AND *D*, RESPECTIVELY. A LYS 47 A LYS 47 HELX_P A ILE 55 A ILE 55 1 A11 9 B ILE 124 B ILE 19 HELX_P B ALA 129 B ALA 24 1 A21 6 B PRO 149 B PRO 44 HELX_P B LEU 159 B LEU 54 1 A31 11 B PRO 240 B PRO 135 HELX_P B GLY 252 B GLY 147 1 A41 13 B PRO 264 B PRO 159 HELX_P B LEU 271 B LEU 166 1 A51 8 B SER 286 B SER 181 HELX_P B THR 291 B THR 186 1 A61 6 B GLY 322 B GLY 217 HELX_P B GLY 327 B GLY 222 1 A71 6 C LYS 47 C LYS 47 HELX_P C ILE 55 C ILE 55 1 A12 9 D ILE 124 D ILE 19 HELX_P D ALA 129 D ALA 24 1 A22 6 D PRO 149 D PRO 44 HELX_P D LEU 159 D LEU 54 1 A32 11 D PRO 240 D PRO 135 HELX_P D GLY 252 D GLY 147 1 A42 13 D PRO 264 D PRO 159 HELX_P D LEU 271 D LEU 166 1 A52 8 D SER 286 D SER 181 HELX_P D THR 291 D THR 186 1 A62 6 D GLY 322 D GLY 217 HELX_P D GLY 327 D GLY 222 1 A72 6 disulf 2.044 A CYS 27 A SG CYS 27 1_555 A CYS 96 A SG CYS 96 1_555 disulf 2.003 A CYS 46 A SG CYS 46 1_555 A CYS 53 A SG CYS 53 1_555 disulf 2.026 B CYS 222 B SG CYS 117 1_555 B CYS 226 B SG CYS 121 1_555 disulf 2.021 B CYS 265 B SG CYS 160 1_555 B CYS 302 B SG CYS 197 1_555 disulf 2.003 C CYS 27 C SG CYS 27 1_555 C CYS 96 C SG CYS 96 1_555 disulf 2.012 C CYS 46 C SG CYS 46 1_555 C CYS 53 C SG CYS 53 1_555 disulf 2.006 D CYS 222 D SG CYS 117 1_555 D CYS 226 D SG CYS 121 1_555 disulf 2.020 D CYS 265 D SG CYS 160 1_555 D CYS 302 D SG CYS 197 1_555 covale 1.467 one N-Glycosylation A ASN 70 A ND2 ASN 70 1_555 E NAG 1 E C1 NAG 1_555 covale 1.448 one N-Glycosylation B NAG 1 G C1 NAG 1_555 B ASN 199 B ND2 ASN 94 1_555 covale 1.450 one N-Glycosylation C ASN 70 C ND2 ASN 70 1_555 F NAG 1 F C1 NAG 1_555 covale 1.469 one N-Glycosylation D NAG 1 H C1 NAG 1_555 D ASN 199 D ND2 ASN 94 1_555 covale 1.439 both E NAG 1 E O4 NAG 1_555 E NAG 2 E C1 NAG 1_555 covale 1.413 both E NAG 2 E O4 NAG 1_555 E BMA 3 E C1 BMA 1_555 covale 1.445 both E BMA 3 E O6 BMA 1_555 E MAN 4 E C1 MAN 1_555 covale 1.440 both F NAG 1 F O4 NAG 1_555 F NAG 2 F C1 NAG 1_555 covale 1.444 both F NAG 2 F O4 NAG 1_555 F BMA 3 F C1 BMA 1_555 covale 1.445 both F BMA 3 F O6 BMA 1_555 F MAN 4 F C1 MAN 1_555 LYSOSOMAL ASPARTIC PROTEASE LYSOSOMAL ASPARTIC PROTEASE A THR 23 A THR 23 1 A PRO 24 A PRO 24 -9.43 A VAL 94 A VAL 94 1 A PRO 95 A PRO 95 -7.47 B GLN 176 B GLN 71 1 B PRO 177 B PRO 72 -0.07 B PRO 313 B PRO 208 1 B PRO 314 B PRO 209 8.20 B GLY 316 B GLY 211 1 B PRO 317 B PRO 212 -3.56 C GLY 1 C GLY 1 1 C PRO 2 C PRO 2 -11.58 C THR 23 C THR 23 1 C PRO 24 C PRO 24 -11.78 C VAL 94 C VAL 94 1 C PRO 95 C PRO 95 -17.40 D GLN 176 D GLN 71 1 D PRO 177 D PRO 72 -5.50 D GLY 316 D GLY 211 1 D PRO 317 D PRO 212 2.06 given 0.735300 0.674700 -0.064150 0.608800 -0.699200 -0.374800 -0.297800 0.236600 -0.924900 -9.57840 129.91299 10.65180 CATD_HUMAN UNP 1 1 P07339 MQPSSLLPLALCLLAAPASALVRIPLHKFTSIRRTMSEVGGSVEDLIAKGPVSKYSQAVPAVTEGPIPEVLKNYMDAQYY GEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPC QSASSASALGGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQ PGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPL IQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRD NNRVGFAEAARL CATD_HUMAN UNP 2 1 P07339 MQPSSLLPLALCLLAAPASALVRIPLHKFTSIRRTMSEVGGSVEDLIAKGPVSKYSQAVPAVTEGPIPEVLKNYMDAQYY GEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPC QSASSASALGGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQ PGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPL IQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRD NNRVGFAEAARL 65 161 1LYA 1 97 P07339 A 1 1 97 170 410 1LYA 106 346 P07339 B 2 1 241 65 161 1LYA 1 97 P07339 C 1 1 97 170 410 1LYA 106 346 P07339 D 2 1 241 6 4 9 9 7 7 6 4 9 9 7 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel A ILE 3 A ILE 3 A LEU 7 A LEU 7 B GLY 178 B GLY 73 B GLY 184 B GLY 79 B ILE 164 B ILE 59 B SER 170 B SER 65 B TYR 330 B TYR 225 B ASP 334 B ASP 229 B ASN 337 B ASN 232 B ALA 346 B ALA 241 B TYR 190 B TYR 85 B VAL 200 B VAL 95 B VAL 254 B VAL 149 B LEU 256 B LEU 151 B GLU 260 B GLU 155 B ILE 263 B ILE 158 B LEU 301 B LEU 196 B SER 304 B SER 199 B GLN 296 B GLN 191 B GLY 298 B GLY 193 A VAL 68 A VAL 68 A TYR 78 A TYR 78 A GLY 81 A GLY 81 A ASP 90 A ASP 90 B GLN 113 B GLN 8 B LYS 120 B LYS 15 A ASN 38 A ASN 38 A SER 43 A SER 43 B PHE 131 B PHE 26 B MET 137 B MET 32 A GLN 26 A GLN 26 A ASP 33 A ASP 33 A GLN 14 A GLN 14 A GLY 22 A GLY 22 A LYS 8 A LYS 8 A TYR 10 A TYR 10 B VAL 110 B VAL 5 B ARG 112 B ARG 7 A VAL 68 A VAL 68 A TYR 78 A TYR 78 A GLY 81 A GLY 81 A ASP 90 A ASP 90 B GLN 113 B GLN 8 B LYS 120 B LYS 15 A ASN 38 A ASN 38 A SER 43 A SER 43 B PHE 131 B PHE 26 B MET 137 B MET 32 A GLN 26 A GLN 26 A ASP 33 A ASP 33 A GLN 14 A GLN 14 A GLY 22 A GLY 22 A THR 91 A THR 91 A CYS 96 A CYS 96 B VAL 110 B VAL 5 B ARG 112 B ARG 7 B LYS 281 B LYS 176 B LEU 285 B LEU 180 B ALA 273 B ALA 168 B LEU 278 B LEU 173 B TRP 206 B TRP 101 B ALA 216 B ALA 111 B LEU 219 B LEU 114 B LEU 221 B LEU 116 B LEU 219 B LEU 114 B LYS 223 B LYS 118 B THR 234 B THR 129 B GLY 239 B GLY 134 B GLY 305 B GLY 200 B MET 309 B MET 204 B LYS 281 B LYS 176 B LEU 285 B LEU 180 B ALA 273 B ALA 168 B LEU 278 B LEU 173 B TRP 206 B TRP 101 B ALA 216 B ALA 111 B CYS 226 B CYS 121 B ASP 231 B ASP 126 B LEU 219 B LEU 114 B LYS 223 B LYS 118 B THR 234 B THR 129 B GLY 239 B GLY 134 B GLY 305 B GLY 200 B MET 309 B MET 204 C ILE 3 C ILE 3 C LEU 7 C LEU 7 D GLY 178 D GLY 73 D GLY 184 D GLY 79 D ILE 164 D ILE 59 D SER 170 D SER 65 D TYR 330 D TYR 225 D ASP 334 D ASP 229 D ASN 337 D ASN 232 D ALA 346 D ALA 241 D TYR 190 D TYR 85 D VAL 200 D VAL 95 D VAL 254 D VAL 149 D LEU 256 D LEU 151 D GLU 260 D GLU 155 D ILE 263 D ILE 158 D LEU 301 D LEU 196 D SER 304 D SER 199 D GLN 296 D GLN 191 D GLY 298 D GLY 193 C VAL 68 C VAL 68 C TYR 78 C TYR 78 C GLY 81 C GLY 81 C ASP 90 C ASP 90 D GLN 113 D GLN 8 D LYS 120 D LYS 15 C ASN 38 C ASN 38 C SER 43 C SER 43 D PHE 131 D PHE 26 D MET 137 D MET 32 C GLN 26 C GLN 26 C ASP 33 C ASP 33 C GLN 14 C GLN 14 C GLY 22 C GLY 22 C LYS 8 C LYS 8 C TYR 10 C TYR 10 D VAL 110 D VAL 5 D ARG 112 D ARG 7 C VAL 68 C VAL 68 C TYR 78 C TYR 78 C GLY 81 C GLY 81 C ASP 90 C ASP 90 D GLN 113 D GLN 8 D LYS 120 D LYS 15 C ASN 38 C ASN 38 C SER 43 C SER 43 D PHE 131 D PHE 26 D MET 137 D MET 32 C GLN 26 C GLN 26 C ASP 33 C ASP 33 C GLN 14 C GLN 14 C GLY 22 C GLY 22 C THR 91 C THR 91 C CYS 96 C CYS 96 D VAL 110 D VAL 5 D ARG 112 D ARG 7 D LYS 281 D LYS 176 D LEU 285 D LEU 180 D ALA 273 D ALA 168 D LEU 278 D LEU 173 D TRP 206 D TRP 101 D ALA 216 D ALA 111 D LEU 219 D LEU 114 D LEU 221 D LEU 116 D LEU 219 D LEU 114 D LYS 223 D LYS 118 D THR 234 D THR 129 D GLY 239 D GLY 134 D GLY 305 D GLY 200 D MET 309 D MET 204 D LYS 281 D LYS 176 D LEU 285 D LEU 180 D ALA 273 D ALA 168 D LEU 278 D LEU 173 D TRP 206 D TRP 101 D ALA 216 D ALA 111 D CYS 226 D CYS 121 D ASP 231 D ASP 126 D LEU 219 D LEU 114 D LYS 223 D LYS 118 D THR 234 D THR 129 D GLY 239 D GLY 134 D GLY 305 D GLY 200 D MET 309 D MET 204 170 P 65