.017504
0.000000
0.000000
0.000000
.016396
0.000000
0.000000
0.000000
.030404
0.00000
0.00000
0.00000
Artymiuk, P.J.
Blake, C.C.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
57.130
60.990
32.890
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
152
737
762
10.1016/0022-2836(81)90125-X
7334520
Refinement of human lysozyme at 1.5 A resolution analysis of non-bonded and hydrogen-bond interactions.
1981
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
167
693
X-Ray Studies of Water in Crystals of Lysozyme
1983
UK
Nature
NATUAS
0006
0028-0836
280
563
Crystallographic Studies of the Dynamic Properties of Lysozyme
1979
National Biomedical Research Foundation, Silver Spring,Md.
Atlas of Protein Sequence and Structure,Supplement 1
435
0-912466-04-9
5
32
1973
1
.017504
0.000000
0.000000
0.000000
.016396
0.000000
0.000000
0.000000
.030404
0.00000
0.00000
0.00000
1
x-ray
1
1.0
14720.693
HUMAN LYSOZYME
3.2.1.17
1
man
polymer
no
no
KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLS
CSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLS
CSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
9606
Homo sapiens
1.95
36.79
pdbx_database_status
struct_conf
struct_conf_type
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
1
0
1985-01-02
1
1
2008-03-03
1
2
2011-07-13
1
3
2017-11-29
_pdbx_database_status.process_site
Y
BNL
1984-10-12
REL
FOR PURPOSES OF COMPARISON WITH HEN EGG-WHITE LYSOZYME
(HEWL) - HUMAN LYSOZYME HAS AN INSERTION OF A GLYCINE
BETWEEN HEWL RESIDUES 48 AND 49. THIS INSERTION IS
LABELLED GLY 49 AND ALL SUBSEQUENT RESIDUE NUMBERS ARE
HIGHER BY 1 THAN IN HEWL.
LYS
1
n
1
LYS
1
A
VAL
2
n
2
VAL
2
A
PHE
3
n
3
PHE
3
A
GLU
4
n
4
GLU
4
A
ARG
5
n
5
ARG
5
A
CYS
6
n
6
CYS
6
A
GLU
7
n
7
GLU
7
A
LEU
8
n
8
LEU
8
A
ALA
9
n
9
ALA
9
A
ARG
10
n
10
ARG
10
A
THR
11
n
11
THR
11
A
LEU
12
n
12
LEU
12
A
LYS
13
n
13
LYS
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
GLY
16
n
16
GLY
16
A
MET
17
n
17
MET
17
A
ASP
18
n
18
ASP
18
A
GLY
19
n
19
GLY
19
A
TYR
20
n
20
TYR
20
A
ARG
21
n
21
ARG
21
A
GLY
22
n
22
GLY
22
A
ILE
23
n
23
ILE
23
A
SER
24
n
24
SER
24
A
LEU
25
n
25
LEU
25
A
ALA
26
n
26
ALA
26
A
ASN
27
n
27
ASN
27
A
TRP
28
n
28
TRP
28
A
MET
29
n
29
MET
29
A
CYS
30
n
30
CYS
30
A
LEU
31
n
31
LEU
31
A
ALA
32
n
32
ALA
32
A
LYS
33
n
33
LYS
33
A
TRP
34
n
34
TRP
34
A
GLU
35
n
35
GLU
35
A
SER
36
n
36
SER
36
A
GLY
37
n
37
GLY
37
A
TYR
38
n
38
TYR
38
A
ASN
39
n
39
ASN
39
A
THR
40
n
40
THR
40
A
ARG
41
n
41
ARG
41
A
ALA
42
n
42
ALA
42
A
THR
43
n
43
THR
43
A
ASN
44
n
44
ASN
44
A
TYR
45
n
45
TYR
45
A
ASN
46
n
46
ASN
46
A
ALA
47
n
47
ALA
47
A
GLY
48
n
48
GLY
48
A
ASP
49
n
49
ASP
49
A
ARG
50
n
50
ARG
50
A
SER
51
n
51
SER
51
A
THR
52
n
52
THR
52
A
ASP
53
n
53
ASP
53
A
TYR
54
n
54
TYR
54
A
GLY
55
n
55
GLY
55
A
ILE
56
n
56
ILE
56
A
PHE
57
n
57
PHE
57
A
GLN
58
n
58
GLN
58
A
ILE
59
n
59
ILE
59
A
ASN
60
n
60
ASN
60
A
SER
61
n
61
SER
61
A
ARG
62
n
62
ARG
62
A
TYR
63
n
63
TYR
63
A
TRP
64
n
64
TRP
64
A
CYS
65
n
65
CYS
65
A
ASN
66
n
66
ASN
66
A
ASP
67
n
67
ASP
67
A
GLY
68
n
68
GLY
68
A
LYS
69
n
69
LYS
69
A
THR
70
n
70
THR
70
A
PRO
71
n
71
PRO
71
A
GLY
72
n
72
GLY
72
A
ALA
73
n
73
ALA
73
A
VAL
74
n
74
VAL
74
A
ASN
75
n
75
ASN
75
A
ALA
76
n
76
ALA
76
A
CYS
77
n
77
CYS
77
A
HIS
78
n
78
HIS
78
A
LEU
79
n
79
LEU
79
A
SER
80
n
80
SER
80
A
CYS
81
n
81
CYS
81
A
SER
82
n
82
SER
82
A
ALA
83
n
83
ALA
83
A
LEU
84
n
84
LEU
84
A
LEU
85
n
85
LEU
85
A
GLN
86
n
86
GLN
86
A
ASP
87
n
87
ASP
87
A
ASN
88
n
88
ASN
88
A
ILE
89
n
89
ILE
89
A
ALA
90
n
90
ALA
90
A
ASP
91
n
91
ASP
91
A
ALA
92
n
92
ALA
92
A
VAL
93
n
93
VAL
93
A
ALA
94
n
94
ALA
94
A
CYS
95
n
95
CYS
95
A
ALA
96
n
96
ALA
96
A
LYS
97
n
97
LYS
97
A
ARG
98
n
98
ARG
98
A
VAL
99
n
99
VAL
99
A
VAL
100
n
100
VAL
100
A
ARG
101
n
101
ARG
101
A
ASP
102
n
102
ASP
102
A
PRO
103
n
103
PRO
103
A
GLN
104
n
104
GLN
104
A
GLY
105
n
105
GLY
105
A
ILE
106
n
106
ILE
106
A
ARG
107
n
107
ARG
107
A
ALA
108
n
108
ALA
108
A
TRP
109
n
109
TRP
109
A
VAL
110
n
110
VAL
110
A
ALA
111
n
111
ALA
111
A
TRP
112
n
112
TRP
112
A
ARG
113
n
113
ARG
113
A
ASN
114
n
114
ASN
114
A
ARG
115
n
115
ARG
115
A
CYS
116
n
116
CYS
116
A
GLN
117
n
117
GLN
117
A
ASN
118
n
118
ASN
118
A
ARG
119
n
119
ARG
119
A
ASP
120
n
120
ASP
120
A
VAL
121
n
121
VAL
121
A
ARG
122
n
122
ARG
122
A
GLN
123
n
123
GLN
123
A
TYR
124
n
124
TYR
124
A
VAL
125
n
125
VAL
125
A
GLN
126
n
126
GLN
126
A
GLY
127
n
127
GLY
127
A
CYS
128
n
128
CYS
128
A
GLY
129
n
129
GLY
129
A
VAL
130
n
130
VAL
130
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
1
A
O
LYS
1
A
N
THR
40
A
N
THR
40
A
O
ALA
42
A
O
ALA
42
A
N
GLY
55
A
N
GLY
55
A
O
THR
52
A
O
THR
52
A
N
SER
61
A
N
SER
61
1
A
ARG
14
0.120
SIDE CHAIN
1
A
ARG
107
0.254
SIDE CHAIN
1
A
ARG
113
0.158
SIDE CHAIN
1
A
ARG
115
0.095
SIDE CHAIN
1
A
ARG
122
0.173
SIDE CHAIN
1
14.43
1.20
123.30
137.73
A
A
A
OE1
CD
OE2
GLU
GLU
GLU
4
4
4
N
1
-17.92
2.00
118.30
100.38
A
A
A
CG
CD
OE1
GLU
GLU
GLU
4
4
4
N
1
-4.42
0.50
120.30
115.88
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
5
5
5
N
1
9.34
0.50
120.30
129.64
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
14
14
14
N
1
-3.33
0.50
120.30
116.97
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
14
14
14
N
1
9.64
0.90
118.30
127.94
A
A
A
CB
CG
OD1
ASP
ASP
ASP
18
18
18
N
1
-9.22
0.90
118.30
109.08
A
A
A
CB
CG
OD2
ASP
ASP
ASP
18
18
18
N
1
-5.87
0.60
121.00
115.13
A
A
A
CB
CG
CD1
TYR
TYR
TYR
20
20
20
N
1
-4.85
0.80
121.30
116.45
A
A
A
CG
CD1
CE1
TYR
TYR
TYR
20
20
20
N
1
-13.04
1.90
113.70
100.66
A
A
A
CA
CB
CG
TRP
TRP
TRP
34
34
34
N
1
-3.69
0.60
121.00
117.31
A
A
A
CB
CG
CD1
TYR
TYR
TYR
38
38
38
N
1
8.30
1.10
117.90
126.20
A
A
A
CD1
CG
CD2
TYR
TYR
TYR
45
45
45
N
1
-7.81
0.60
121.00
113.19
A
A
A
CB
CG
CD1
TYR
TYR
TYR
45
45
45
N
1
-7.70
0.80
121.30
113.60
A
A
A
CG
CD1
CE1
TYR
TYR
TYR
45
45
45
N
1
6.12
0.50
120.30
126.42
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
50
50
50
N
1
-5.86
0.90
118.30
112.44
A
A
A
CB
CG
OD2
ASP
ASP
ASP
53
53
53
N
1
-7.35
1.10
119.40
112.05
A
A
A
NH1
CZ
NH2
ARG
ARG
ARG
62
62
62
N
1
6.10
0.50
120.30
126.40
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
62
62
62
N
1
17.18
2.20
113.40
130.58
A
A
A
CA
CB
CG
LYS
LYS
LYS
69
69
69
N
1
-16.14
2.60
111.60
95.46
A
A
A
CB
CG
CD
LYS
LYS
LYS
69
69
69
N
1
-10.04
1.50
110.50
100.46
A
A
A
N
CA
CB
SER
SER
SER
82
82
82
N
1
-6.03
0.90
118.30
112.27
A
A
A
CB
CG
OD2
ASP
ASP
ASP
87
87
87
N
1
-8.92
0.50
120.30
111.38
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
98
98
98
N
1
5.20
0.50
120.30
125.50
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
98
98
98
N
1
11.26
1.40
123.60
134.86
A
A
A
CD
NE
CZ
ARG
ARG
ARG
107
107
107
N
1
-11.35
1.10
119.40
108.05
A
A
A
NH1
CZ
NH2
ARG
ARG
ARG
107
107
107
N
1
9.78
0.50
120.30
130.08
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
107
107
107
N
1
9.62
1.60
110.90
120.52
A
A
A
CG1
CB
CG2
VAL
VAL
VAL
110
110
110
N
1
8.70
1.10
119.40
128.10
A
A
A
NH1
CZ
NH2
ARG
ARG
ARG
113
113
113
N
1
3.58
0.50
120.30
123.88
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
113
113
113
N
1
-12.31
0.50
120.30
107.99
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
113
113
113
N
1
8.17
0.50
120.30
128.47
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
115
115
115
N
1
-3.64
0.50
120.30
116.66
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
119
119
119
N
1
6.07
0.50
120.30
126.37
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
119
119
119
N
1
4.49
0.60
121.00
125.49
A
A
A
CB
CG
CD2
TYR
TYR
TYR
124
124
124
N
1
-4.61
0.60
121.00
116.39
A
A
A
CB
CG
CD1
TYR
TYR
TYR
124
124
124
N
1
A
A
NE1
CE2
TRP
TRP
64
64
-0.091
0.013
1.371
1.280
N
1
A
A
NE1
CE2
TRP
TRP
109
109
-0.092
0.013
1.371
1.279
N
1
A
A
NE1
CE2
TRP
TRP
112
112
-0.094
0.013
1.371
1.277
N
1
A
A
CD
O
ARG
GLY
14
127
2.11
1_555
2_565
1
A
CYS
116
-131.79
-40.85
0.177
0.187
1.5
10.0
1
1.5
10.0
0
1029
0
0
1029
0.009
0.05
LYSOZYME (E.C.3.2.1.17)
REFINEMENT OF HUMAN LYSOZYME AT 1.5 ANGSTROMS RESOLUTION. ANALYSIS OF NON-BONDED AND HYDROGEN-BOND INTERACTIONS
1
N
N
A
ARG
5
A
ARG
5
HELX_P
SEE J.MOL.BIOL.152 P737
A
ARG
14
A
ARG
14
1
A
10
A
LEU
25
A
LEU
25
HELX_P
SEE J.MOL.BIOL.152 P737
A
GLU
35
A
GLU
35
1
B
11
A
SER
80
A
SER
80
HELX_P
SEE J.MOL.BIOL.152 P737
A
LEU
85
A
LEU
85
5
E
6
A
ALA
90
A
ALA
90
HELX_P
SEE J.MOL.BIOL.152 P737
A
VAL
99
A
VAL
99
1
C
10
A
VAL
110
A
VAL
110
HELX_P
SEE J.MOL.BIOL.152 P737
A
CYS
116
A
CYS
116
1
D
7
disulf
2.074
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
128
A
SG
CYS
128
1_555
disulf
2.059
A
CYS
30
A
SG
CYS
30
1_555
A
CYS
116
A
SG
CYS
116
1_555
disulf
2.081
A
CYS
65
A
SG
CYS
65
1_555
A
CYS
81
A
SG
CYS
81
1_555
disulf
2.042
A
CYS
77
A
SG
CYS
77
1_555
A
CYS
95
A
SG
CYS
95
1_555
HYDROLASE (O-GLYCOSYL)
HYDROLASE (O-GLYCOSYL)
LYSC_HUMAN
UNP
1
1
P61626
MKALIVLGLVLLSVTVQGKVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSR
YWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
19
148
1LZ1
1
130
P61626
A
1
1
130
2
3
anti-parallel
anti-parallel
anti-parallel
A
LYS
1
A
LYS
1
A
PHE
3
A
PHE
3
A
TYR
38
A
TYR
38
A
THR
40
A
THR
40
A
ALA
42
A
ALA
42
A
ASN
46
A
ASN
46
A
SER
51
A
SER
51
A
GLY
55
A
GLY
55
A
ILE
59
A
ILE
59
A
SER
61
A
SER
61
Unknown
1
Unknown
1
A
GLU
35
A
GLU
35
1
1_555
A
ASP
53
A
ASP
53
1
1_555
19
P 21 21 21