.017504 0.000000 0.000000 0.000000 .016396 0.000000 0.000000 0.000000 .030404 0.00000 0.00000 0.00000 Artymiuk, P.J. Blake, C.C.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 57.130 60.990 32.890 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 152 737 762 10.1016/0022-2836(81)90125-X 7334520 Refinement of human lysozyme at 1.5 A resolution analysis of non-bonded and hydrogen-bond interactions. 1981 UK J.Mol.Biol. JMOBAK 0070 0022-2836 167 693 X-Ray Studies of Water in Crystals of Lysozyme 1983 UK Nature NATUAS 0006 0028-0836 280 563 Crystallographic Studies of the Dynamic Properties of Lysozyme 1979 National Biomedical Research Foundation, Silver Spring,Md. Atlas of Protein Sequence and Structure,Supplement 1 435 0-912466-04-9 5 32 1973 1 .017504 0.000000 0.000000 0.000000 .016396 0.000000 0.000000 0.000000 .030404 0.00000 0.00000 0.00000 1 x-ray 1 1.0 14720.693 HUMAN LYSOZYME 3.2.1.17 1 man polymer no no KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLS CSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLS CSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 Homo sapiens 1.95 36.79 pdbx_database_status struct_conf struct_conf_type repository Initial release Version format compliance Version format compliance Derived calculations Other 1 0 1985-01-02 1 1 2008-03-03 1 2 2011-07-13 1 3 2017-11-29 _pdbx_database_status.process_site Y BNL 1984-10-12 REL FOR PURPOSES OF COMPARISON WITH HEN EGG-WHITE LYSOZYME (HEWL) - HUMAN LYSOZYME HAS AN INSERTION OF A GLYCINE BETWEEN HEWL RESIDUES 48 AND 49. THIS INSERTION IS LABELLED GLY 49 AND ALL SUBSEQUENT RESIDUE NUMBERS ARE HIGHER BY 1 THAN IN HEWL. LYS 1 n 1 LYS 1 A VAL 2 n 2 VAL 2 A PHE 3 n 3 PHE 3 A GLU 4 n 4 GLU 4 A ARG 5 n 5 ARG 5 A CYS 6 n 6 CYS 6 A GLU 7 n 7 GLU 7 A LEU 8 n 8 LEU 8 A ALA 9 n 9 ALA 9 A ARG 10 n 10 ARG 10 A THR 11 n 11 THR 11 A LEU 12 n 12 LEU 12 A LYS 13 n 13 LYS 13 A ARG 14 n 14 ARG 14 A LEU 15 n 15 LEU 15 A GLY 16 n 16 GLY 16 A MET 17 n 17 MET 17 A ASP 18 n 18 ASP 18 A GLY 19 n 19 GLY 19 A TYR 20 n 20 TYR 20 A ARG 21 n 21 ARG 21 A GLY 22 n 22 GLY 22 A ILE 23 n 23 ILE 23 A SER 24 n 24 SER 24 A LEU 25 n 25 LEU 25 A ALA 26 n 26 ALA 26 A ASN 27 n 27 ASN 27 A TRP 28 n 28 TRP 28 A MET 29 n 29 MET 29 A CYS 30 n 30 CYS 30 A LEU 31 n 31 LEU 31 A ALA 32 n 32 ALA 32 A LYS 33 n 33 LYS 33 A TRP 34 n 34 TRP 34 A GLU 35 n 35 GLU 35 A SER 36 n 36 SER 36 A GLY 37 n 37 GLY 37 A TYR 38 n 38 TYR 38 A ASN 39 n 39 ASN 39 A THR 40 n 40 THR 40 A ARG 41 n 41 ARG 41 A ALA 42 n 42 ALA 42 A THR 43 n 43 THR 43 A ASN 44 n 44 ASN 44 A TYR 45 n 45 TYR 45 A ASN 46 n 46 ASN 46 A ALA 47 n 47 ALA 47 A GLY 48 n 48 GLY 48 A ASP 49 n 49 ASP 49 A ARG 50 n 50 ARG 50 A SER 51 n 51 SER 51 A THR 52 n 52 THR 52 A ASP 53 n 53 ASP 53 A TYR 54 n 54 TYR 54 A GLY 55 n 55 GLY 55 A ILE 56 n 56 ILE 56 A PHE 57 n 57 PHE 57 A GLN 58 n 58 GLN 58 A ILE 59 n 59 ILE 59 A ASN 60 n 60 ASN 60 A SER 61 n 61 SER 61 A ARG 62 n 62 ARG 62 A TYR 63 n 63 TYR 63 A TRP 64 n 64 TRP 64 A CYS 65 n 65 CYS 65 A ASN 66 n 66 ASN 66 A ASP 67 n 67 ASP 67 A GLY 68 n 68 GLY 68 A LYS 69 n 69 LYS 69 A THR 70 n 70 THR 70 A PRO 71 n 71 PRO 71 A GLY 72 n 72 GLY 72 A ALA 73 n 73 ALA 73 A VAL 74 n 74 VAL 74 A ASN 75 n 75 ASN 75 A ALA 76 n 76 ALA 76 A CYS 77 n 77 CYS 77 A HIS 78 n 78 HIS 78 A LEU 79 n 79 LEU 79 A SER 80 n 80 SER 80 A CYS 81 n 81 CYS 81 A SER 82 n 82 SER 82 A ALA 83 n 83 ALA 83 A LEU 84 n 84 LEU 84 A LEU 85 n 85 LEU 85 A GLN 86 n 86 GLN 86 A ASP 87 n 87 ASP 87 A ASN 88 n 88 ASN 88 A ILE 89 n 89 ILE 89 A ALA 90 n 90 ALA 90 A ASP 91 n 91 ASP 91 A ALA 92 n 92 ALA 92 A VAL 93 n 93 VAL 93 A ALA 94 n 94 ALA 94 A CYS 95 n 95 CYS 95 A ALA 96 n 96 ALA 96 A LYS 97 n 97 LYS 97 A ARG 98 n 98 ARG 98 A VAL 99 n 99 VAL 99 A VAL 100 n 100 VAL 100 A ARG 101 n 101 ARG 101 A ASP 102 n 102 ASP 102 A PRO 103 n 103 PRO 103 A GLN 104 n 104 GLN 104 A GLY 105 n 105 GLY 105 A ILE 106 n 106 ILE 106 A ARG 107 n 107 ARG 107 A ALA 108 n 108 ALA 108 A TRP 109 n 109 TRP 109 A VAL 110 n 110 VAL 110 A ALA 111 n 111 ALA 111 A TRP 112 n 112 TRP 112 A ARG 113 n 113 ARG 113 A ASN 114 n 114 ASN 114 A ARG 115 n 115 ARG 115 A CYS 116 n 116 CYS 116 A GLN 117 n 117 GLN 117 A ASN 118 n 118 ASN 118 A ARG 119 n 119 ARG 119 A ASP 120 n 120 ASP 120 A VAL 121 n 121 VAL 121 A ARG 122 n 122 ARG 122 A GLN 123 n 123 GLN 123 A TYR 124 n 124 TYR 124 A VAL 125 n 125 VAL 125 A GLN 126 n 126 GLN 126 A GLY 127 n 127 GLY 127 A CYS 128 n 128 CYS 128 A GLY 129 n 129 GLY 129 A VAL 130 n 130 VAL 130 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LYS 1 A O LYS 1 A N THR 40 A N THR 40 A O ALA 42 A O ALA 42 A N GLY 55 A N GLY 55 A O THR 52 A O THR 52 A N SER 61 A N SER 61 1 A ARG 14 0.120 SIDE CHAIN 1 A ARG 107 0.254 SIDE CHAIN 1 A ARG 113 0.158 SIDE CHAIN 1 A ARG 115 0.095 SIDE CHAIN 1 A ARG 122 0.173 SIDE CHAIN 1 14.43 1.20 123.30 137.73 A A A OE1 CD OE2 GLU GLU GLU 4 4 4 N 1 -17.92 2.00 118.30 100.38 A A A CG CD OE1 GLU GLU GLU 4 4 4 N 1 -4.42 0.50 120.30 115.88 A A A NE CZ NH2 ARG ARG ARG 5 5 5 N 1 9.34 0.50 120.30 129.64 A A A NE CZ NH1 ARG ARG ARG 14 14 14 N 1 -3.33 0.50 120.30 116.97 A A A NE CZ NH2 ARG ARG ARG 14 14 14 N 1 9.64 0.90 118.30 127.94 A A A CB CG OD1 ASP ASP ASP 18 18 18 N 1 -9.22 0.90 118.30 109.08 A A A CB CG OD2 ASP ASP ASP 18 18 18 N 1 -5.87 0.60 121.00 115.13 A A A CB CG CD1 TYR TYR TYR 20 20 20 N 1 -4.85 0.80 121.30 116.45 A A A CG CD1 CE1 TYR TYR TYR 20 20 20 N 1 -13.04 1.90 113.70 100.66 A A A CA CB CG TRP TRP TRP 34 34 34 N 1 -3.69 0.60 121.00 117.31 A A A CB CG CD1 TYR TYR TYR 38 38 38 N 1 8.30 1.10 117.90 126.20 A A A CD1 CG CD2 TYR TYR TYR 45 45 45 N 1 -7.81 0.60 121.00 113.19 A A A CB CG CD1 TYR TYR TYR 45 45 45 N 1 -7.70 0.80 121.30 113.60 A A A CG CD1 CE1 TYR TYR TYR 45 45 45 N 1 6.12 0.50 120.30 126.42 A A A NE CZ NH1 ARG ARG ARG 50 50 50 N 1 -5.86 0.90 118.30 112.44 A A A CB CG OD2 ASP ASP ASP 53 53 53 N 1 -7.35 1.10 119.40 112.05 A A A NH1 CZ NH2 ARG ARG ARG 62 62 62 N 1 6.10 0.50 120.30 126.40 A A A NE CZ NH2 ARG ARG ARG 62 62 62 N 1 17.18 2.20 113.40 130.58 A A A CA CB CG LYS LYS LYS 69 69 69 N 1 -16.14 2.60 111.60 95.46 A A A CB CG CD LYS LYS LYS 69 69 69 N 1 -10.04 1.50 110.50 100.46 A A A N CA CB SER SER SER 82 82 82 N 1 -6.03 0.90 118.30 112.27 A A A CB CG OD2 ASP ASP ASP 87 87 87 N 1 -8.92 0.50 120.30 111.38 A A A NE CZ NH1 ARG ARG ARG 98 98 98 N 1 5.20 0.50 120.30 125.50 A A A NE CZ NH2 ARG ARG ARG 98 98 98 N 1 11.26 1.40 123.60 134.86 A A A CD NE CZ ARG ARG ARG 107 107 107 N 1 -11.35 1.10 119.40 108.05 A A A NH1 CZ NH2 ARG ARG ARG 107 107 107 N 1 9.78 0.50 120.30 130.08 A A A NE CZ NH2 ARG ARG ARG 107 107 107 N 1 9.62 1.60 110.90 120.52 A A A CG1 CB CG2 VAL VAL VAL 110 110 110 N 1 8.70 1.10 119.40 128.10 A A A NH1 CZ NH2 ARG ARG ARG 113 113 113 N 1 3.58 0.50 120.30 123.88 A A A NE CZ NH1 ARG ARG ARG 113 113 113 N 1 -12.31 0.50 120.30 107.99 A A A NE CZ NH2 ARG ARG ARG 113 113 113 N 1 8.17 0.50 120.30 128.47 A A A NE CZ NH2 ARG ARG ARG 115 115 115 N 1 -3.64 0.50 120.30 116.66 A A A NE CZ NH1 ARG ARG ARG 119 119 119 N 1 6.07 0.50 120.30 126.37 A A A NE CZ NH2 ARG ARG ARG 119 119 119 N 1 4.49 0.60 121.00 125.49 A A A CB CG CD2 TYR TYR TYR 124 124 124 N 1 -4.61 0.60 121.00 116.39 A A A CB CG CD1 TYR TYR TYR 124 124 124 N 1 A A NE1 CE2 TRP TRP 64 64 -0.091 0.013 1.371 1.280 N 1 A A NE1 CE2 TRP TRP 109 109 -0.092 0.013 1.371 1.279 N 1 A A NE1 CE2 TRP TRP 112 112 -0.094 0.013 1.371 1.277 N 1 A A CD O ARG GLY 14 127 2.11 1_555 2_565 1 A CYS 116 -131.79 -40.85 0.177 0.187 1.5 10.0 1 1.5 10.0 0 1029 0 0 1029 0.009 0.05 LYSOZYME (E.C.3.2.1.17) REFINEMENT OF HUMAN LYSOZYME AT 1.5 ANGSTROMS RESOLUTION. ANALYSIS OF NON-BONDED AND HYDROGEN-BOND INTERACTIONS 1 N N A ARG 5 A ARG 5 HELX_P SEE J.MOL.BIOL.152 P737 A ARG 14 A ARG 14 1 A 10 A LEU 25 A LEU 25 HELX_P SEE J.MOL.BIOL.152 P737 A GLU 35 A GLU 35 1 B 11 A SER 80 A SER 80 HELX_P SEE J.MOL.BIOL.152 P737 A LEU 85 A LEU 85 5 E 6 A ALA 90 A ALA 90 HELX_P SEE J.MOL.BIOL.152 P737 A VAL 99 A VAL 99 1 C 10 A VAL 110 A VAL 110 HELX_P SEE J.MOL.BIOL.152 P737 A CYS 116 A CYS 116 1 D 7 disulf 2.074 A CYS 6 A SG CYS 6 1_555 A CYS 128 A SG CYS 128 1_555 disulf 2.059 A CYS 30 A SG CYS 30 1_555 A CYS 116 A SG CYS 116 1_555 disulf 2.081 A CYS 65 A SG CYS 65 1_555 A CYS 81 A SG CYS 81 1_555 disulf 2.042 A CYS 77 A SG CYS 77 1_555 A CYS 95 A SG CYS 95 1_555 HYDROLASE (O-GLYCOSYL) HYDROLASE (O-GLYCOSYL) LYSC_HUMAN UNP 1 1 P61626 MKALIVLGLVLLSVTVQGKVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSR YWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV 19 148 1LZ1 1 130 P61626 A 1 1 130 2 3 anti-parallel anti-parallel anti-parallel A LYS 1 A LYS 1 A PHE 3 A PHE 3 A TYR 38 A TYR 38 A THR 40 A THR 40 A ALA 42 A ALA 42 A ASN 46 A ASN 46 A SER 51 A SER 51 A GLY 55 A GLY 55 A ILE 59 A ILE 59 A SER 61 A SER 61 Unknown 1 Unknown 1 A GLU 35 A GLU 35 1 1_555 A ASP 53 A ASP 53 1 1_555 19 P 21 21 21