0.017609 0.000000 0.000000 0.000000 0.016402 0.000000 0.000000 0.000000 0.029709 0.00000 0.00000 0.00000 Matsushima, M. Inaka, K. Yamada, T. Sekiguchi, K. Kikuchi, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 56.790 60.970 33.660 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 268 10588 10592 8486712 Structural and functional analyses of the Arg-Gly-Asp sequence introduced into human lysozyme. 1993 US Science SCIEAS 0038 0036-8075 258 987 Structure of a Fibronectin Typeiii Domain from Tenascin Phased by MAD Analysis of the Selenomethionyl Protein 1992 US J.Biol.Chem. JBCHA3 0071 0021-9258 266 12599 The Crystal Structure of a Mutant Human Lysozyme C77(Slash)95A with Increased Secretion Efficiency in Yeast 1991 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 15463.455 HUMAN LYSOZYME 3.2.1.17 1 man polymer 35.453 CHLORIDE ION 2 syn non-polymer 18.015 water 160 nat water no no KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVTGRGDS PANACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVTGRGDS PANACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 Homo sapiens 1.88 34.71 pdbx_database_status struct_conf struct_conf_type repository Initial release Version format compliance Version format compliance Derived calculations Other 1 0 1993-10-31 1 1 2008-03-24 1 2 2011-07-13 1 3 2017-11-29 _pdbx_database_status.process_site Y BNL 1993-02-03 REL REL CL CHLORIDE ION HOH water CL 131 2 CL CL 131 A CL 132 2 CL CL 132 A HOH 204 3 HOH HOH 204 A HOH 205 3 HOH HOH 205 A HOH 206 3 HOH HOH 206 A HOH 207 3 HOH HOH 207 A HOH 208 3 HOH HOH 208 A HOH 209 3 HOH HOH 209 A HOH 210 3 HOH HOH 210 A HOH 214 3 HOH HOH 214 A HOH 215 3 HOH HOH 215 A HOH 216 3 HOH HOH 216 A HOH 217 3 HOH HOH 217 A HOH 218 3 HOH HOH 218 A HOH 220 3 HOH HOH 220 A HOH 221 3 HOH HOH 221 A HOH 222 3 HOH HOH 222 A HOH 223 3 HOH HOH 223 A HOH 225 3 HOH HOH 225 A HOH 229 3 HOH HOH 229 A HOH 230 3 HOH HOH 230 A HOH 232 3 HOH HOH 232 A HOH 233 3 HOH HOH 233 A HOH 234 3 HOH HOH 234 A HOH 235 3 HOH HOH 235 A HOH 236 3 HOH HOH 236 A HOH 238 3 HOH HOH 238 A HOH 239 3 HOH HOH 239 A HOH 240 3 HOH HOH 240 A HOH 241 3 HOH HOH 241 A HOH 242 3 HOH HOH 242 A HOH 243 3 HOH HOH 243 A HOH 244 3 HOH HOH 244 A HOH 245 3 HOH HOH 245 A HOH 246 3 HOH HOH 246 A HOH 248 3 HOH HOH 248 A HOH 251 3 HOH HOH 251 A HOH 252 3 HOH HOH 252 A HOH 254 3 HOH HOH 254 A HOH 255 3 HOH HOH 255 A HOH 256 3 HOH HOH 256 A HOH 258 3 HOH HOH 258 A HOH 259 3 HOH HOH 259 A HOH 260 3 HOH HOH 260 A HOH 261 3 HOH HOH 261 A HOH 263 3 HOH HOH 263 A HOH 265 3 HOH HOH 265 A HOH 266 3 HOH HOH 266 A HOH 267 3 HOH HOH 267 A HOH 268 3 HOH HOH 268 A HOH 270 3 HOH HOH 270 A HOH 271 3 HOH HOH 271 A HOH 273 3 HOH HOH 273 A HOH 274 3 HOH HOH 274 A HOH 275 3 HOH HOH 275 A HOH 277 3 HOH HOH 277 A HOH 278 3 HOH HOH 278 A HOH 279 3 HOH HOH 279 A HOH 280 3 HOH HOH 280 A HOH 282 3 HOH HOH 282 A HOH 283 3 HOH HOH 283 A HOH 284 3 HOH HOH 284 A HOH 286 3 HOH HOH 286 A HOH 287 3 HOH HOH 287 A HOH 294 3 HOH HOH 294 A HOH 295 3 HOH HOH 295 A HOH 296 3 HOH HOH 296 A HOH 298 3 HOH HOH 298 A HOH 299 3 HOH HOH 299 A HOH 300 3 HOH HOH 300 A HOH 301 3 HOH HOH 301 A HOH 302 3 HOH HOH 302 A HOH 303 3 HOH HOH 303 A HOH 304 3 HOH HOH 304 A HOH 305 3 HOH HOH 305 A HOH 307 3 HOH HOH 307 A HOH 308 3 HOH HOH 308 A HOH 309 3 HOH HOH 309 A HOH 310 3 HOH HOH 310 A HOH 311 3 HOH HOH 311 A HOH 312 3 HOH HOH 312 A HOH 313 3 HOH HOH 313 A HOH 314 3 HOH HOH 314 A HOH 315 3 HOH HOH 315 A HOH 317 3 HOH HOH 317 A HOH 320 3 HOH HOH 320 A HOH 322 3 HOH HOH 322 A HOH 323 3 HOH HOH 323 A HOH 324 3 HOH HOH 324 A HOH 325 3 HOH HOH 325 A HOH 326 3 HOH HOH 326 A HOH 327 3 HOH HOH 327 A HOH 328 3 HOH HOH 328 A HOH 329 3 HOH HOH 329 A HOH 330 3 HOH HOH 330 A HOH 331 3 HOH HOH 331 A HOH 332 3 HOH HOH 332 A HOH 333 3 HOH HOH 333 A HOH 335 3 HOH HOH 335 A HOH 336 3 HOH HOH 336 A HOH 337 3 HOH HOH 337 A HOH 338 3 HOH HOH 338 A HOH 339 3 HOH HOH 339 A HOH 340 3 HOH HOH 340 A HOH 341 3 HOH HOH 341 A HOH 343 3 HOH HOH 343 A HOH 344 3 HOH HOH 344 A HOH 345 3 HOH HOH 345 A HOH 346 3 HOH HOH 346 A HOH 349 3 HOH HOH 349 A HOH 351 3 HOH HOH 351 A HOH 352 3 HOH HOH 352 A HOH 353 3 HOH HOH 353 A HOH 355 3 HOH HOH 355 A HOH 356 3 HOH HOH 356 A HOH 357 3 HOH HOH 357 A HOH 358 3 HOH HOH 358 A HOH 359 3 HOH HOH 359 A HOH 360 3 HOH HOH 360 A HOH 361 3 HOH HOH 361 A HOH 362 3 HOH HOH 362 A HOH 363 3 HOH HOH 363 A HOH 365 3 HOH HOH 365 A HOH 366 3 HOH HOH 366 A HOH 368 3 HOH HOH 368 A HOH 369 3 HOH HOH 369 A HOH 370 3 HOH HOH 370 A HOH 371 3 HOH HOH 371 A HOH 372 3 HOH HOH 372 A HOH 373 3 HOH HOH 373 A HOH 374 3 HOH HOH 374 A HOH 375 3 HOH HOH 375 A HOH 376 3 HOH HOH 376 A HOH 377 3 HOH HOH 377 A HOH 378 3 HOH HOH 378 A HOH 380 3 HOH HOH 380 A HOH 382 3 HOH HOH 382 A HOH 383 3 HOH HOH 383 A HOH 384 3 HOH HOH 384 A HOH 385 3 HOH HOH 385 A HOH 386 3 HOH HOH 386 A HOH 388 3 HOH HOH 388 A HOH 389 3 HOH HOH 389 A HOH 390 3 HOH HOH 390 A HOH 391 3 HOH HOH 391 A HOH 392 3 HOH HOH 392 A HOH 395 3 HOH HOH 395 A HOH 396 3 HOH HOH 396 A HOH 398 3 HOH HOH 398 A HOH 400 3 HOH HOH 400 A HOH 401 3 HOH HOH 401 A HOH 403 3 HOH HOH 403 A HOH 404 3 HOH HOH 404 A HOH 405 3 HOH HOH 405 A HOH 406 3 HOH HOH 406 A HOH 407 3 HOH HOH 407 A HOH 408 3 HOH HOH 408 A HOH 409 3 HOH HOH 409 A HOH 410 3 HOH HOH 410 A HOH 412 3 HOH HOH 412 A HOH 413 3 HOH HOH 413 A HOH 415 3 HOH HOH 415 A LYS 1 n 1 LYS 1 A VAL 2 n 2 VAL 2 A PHE 3 n 3 PHE 3 A GLU 4 n 4 GLU 4 A ARG 5 n 5 ARG 5 A CYS 6 n 6 CYS 6 A GLU 7 n 7 GLU 7 A LEU 8 n 8 LEU 8 A ALA 9 n 9 ALA 9 A ARG 10 n 10 ARG 10 A THR 11 n 11 THR 11 A LEU 12 n 12 LEU 12 A LYS 13 n 13 LYS 13 A ARG 14 n 14 ARG 14 A LEU 15 n 15 LEU 15 A GLY 16 n 16 GLY 16 A MET 17 n 17 MET 17 A ASP 18 n 18 ASP 18 A GLY 19 n 19 GLY 19 A TYR 20 n 20 TYR 20 A ARG 21 n 21 ARG 21 A GLY 22 n 22 GLY 22 A ILE 23 n 23 ILE 23 A SER 24 n 24 SER 24 A LEU 25 n 25 LEU 25 A ALA 26 n 26 ALA 26 A ASN 27 n 27 ASN 27 A TRP 28 n 28 TRP 28 A MET 29 n 29 MET 29 A CYS 30 n 30 CYS 30 A LEU 31 n 31 LEU 31 A ALA 32 n 32 ALA 32 A LYS 33 n 33 LYS 33 A TRP 34 n 34 TRP 34 A GLU 35 n 35 GLU 35 A SER 36 n 36 SER 36 A GLY 37 n 37 GLY 37 A TYR 38 n 38 TYR 38 A ASN 39 n 39 ASN 39 A THR 40 n 40 THR 40 A ARG 41 n 41 ARG 41 A ALA 42 n 42 ALA 42 A THR 43 n 43 THR 43 A ASN 44 n 44 ASN 44 A TYR 45 n 45 TYR 45 A ASN 46 n 46 ASN 46 A ALA 47 n 47 ALA 47 A GLY 48 n 48 GLY 48 A ASP 49 n 49 ASP 49 A ARG 50 n 50 ARG 50 A SER 51 n 51 SER 51 A THR 52 n 52 THR 52 A ASP 53 n 53 ASP 53 A TYR 54 n 54 TYR 54 A GLY 55 n 55 GLY 55 A ILE 56 n 56 ILE 56 A PHE 57 n 57 PHE 57 A GLN 58 n 58 GLN 58 A ILE 59 n 59 ILE 59 A ASN 60 n 60 ASN 60 A SER 61 n 61 SER 61 A ARG 62 n 62 ARG 62 A TYR 63 n 63 TYR 63 A TRP 64 n 64 TRP 64 A CYS 65 n 65 CYS 65 A ASN 66 n 66 ASN 66 A ASP 67 n 67 ASP 67 A GLY 68 n 68 GLY 68 A LYS 69 n 69 LYS 69 A THR 70 n 70 THR 70 A PRO 71 n 71 PRO 71 A GLY 72 n 72 GLY 72 A ALA 73 n 73 ALA 73 A VAL 74 n 74 VAL 74 A THR 74 n 75 A THR 74 A GLY 74 n 76 B GLY 74 A ARG 74 n 77 C ARG 74 A GLY 74 n 78 D GLY 74 A ASP 74 n 79 E ASP 74 A SER 74 n 80 F SER 74 A PRO 74 n 81 G PRO 74 A ALA 74 n 82 H ALA 74 A ASN 75 n 83 ASN 75 A ALA 76 n 84 ALA 76 A CYS 77 n 85 CYS 77 A HIS 78 n 86 HIS 78 A LEU 79 n 87 LEU 79 A SER 80 n 88 SER 80 A CYS 81 n 89 CYS 81 A SER 82 n 90 SER 82 A ALA 83 n 91 ALA 83 A LEU 84 n 92 LEU 84 A LEU 85 n 93 LEU 85 A GLN 86 n 94 GLN 86 A ASP 87 n 95 ASP 87 A ASN 88 n 96 ASN 88 A ILE 89 n 97 ILE 89 A ALA 90 n 98 ALA 90 A ASP 91 n 99 ASP 91 A ALA 92 n 100 ALA 92 A VAL 93 n 101 VAL 93 A ALA 94 n 102 ALA 94 A CYS 95 n 103 CYS 95 A ALA 96 n 104 ALA 96 A LYS 97 n 105 LYS 97 A ARG 98 n 106 ARG 98 A VAL 99 n 107 VAL 99 A VAL 100 n 108 VAL 100 A ARG 101 n 109 ARG 101 A ASP 102 n 110 ASP 102 A PRO 103 n 111 PRO 103 A GLN 104 n 112 GLN 104 A GLY 105 n 113 GLY 105 A ILE 106 n 114 ILE 106 A ARG 107 n 115 ARG 107 A ALA 108 n 116 ALA 108 A TRP 109 n 117 TRP 109 A VAL 110 n 118 VAL 110 A ALA 111 n 119 ALA 111 A TRP 112 n 120 TRP 112 A ARG 113 n 121 ARG 113 A ASN 114 n 122 ASN 114 A ARG 115 n 123 ARG 115 A CYS 116 n 124 CYS 116 A GLN 117 n 125 GLN 117 A ASN 118 n 126 ASN 118 A ARG 119 n 127 ARG 119 A ASP 120 n 128 ASP 120 A VAL 121 n 129 VAL 121 A ARG 122 n 130 ARG 122 A GLN 123 n 131 GLN 123 A TYR 124 n 132 TYR 124 A VAL 125 n 133 VAL 125 A GLN 126 n 134 GLN 126 A GLY 127 n 135 GLY 127 A CYS 128 n 136 CYS 128 A GLY 129 n 137 GLY 129 A VAL 130 n 138 VAL 130 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LYS 1 A O LYS 1 A N THR 40 A N THR 40 A O ALA 42 A O ALA 42 A N GLY 55 A N GLY 55 A O THR 52 A O THR 52 A N SER 61 A N SER 61 1 A A NH1 O ARG PRO 62 71 2.19 1 -3.93 0.50 120.30 116.37 A A A NE CZ NH1 ARG ARG ARG 10 10 10 N 1 3.35 0.50 120.30 123.65 A A A NE CZ NH1 ARG ARG ARG 14 14 14 N 1 -4.25 0.60 121.00 116.75 A A A CB CG CD1 TYR TYR TYR 45 45 45 N C C C 1 5.03 0.50 120.30 125.33 A A A NE CZ NH1 ARG ARG ARG 74 74 74 N C C C 1 -3.42 0.50 120.30 116.88 A A A NE CZ NH2 ARG ARG ARG 74 74 74 N 1 14.23 2.30 115.30 129.53 A A A CA CB CG LEU LEU LEU 79 79 79 N 1 14.46 1.40 123.60 138.06 A A A CD NE CZ ARG ARG ARG 98 98 98 N 1 3.71 0.50 120.30 124.01 A A A NE CZ NH1 ARG ARG ARG 98 98 98 N 1 9.18 1.40 123.60 132.78 A A A CD NE CZ ARG ARG ARG 101 101 101 N 1 5.54 0.50 120.30 125.84 A A A NE CZ NH1 ARG ARG ARG 101 101 101 N 1 3.39 0.50 120.30 123.69 A A A NE CZ NH1 ARG ARG ARG 107 107 107 N 1 -3.50 0.50 120.30 116.80 A A A NE CZ NH2 ARG ARG ARG 107 107 107 N 1 -4.59 0.50 120.30 115.71 A A A NE CZ NH2 ARG ARG ARG 115 115 115 N 1 -7.62 0.90 118.30 110.68 A A A CB CG OD2 ASP ASP ASP 120 120 120 N E 1 A A OD1 CG ASP ARG 74 115 1.85 1_555 1_556 E 1 A A OD1 NE ASP ARG 74 115 1.98 1_555 1_556 1 A A NH2 O ARG HOH 21 314 2.18 1_555 4_557 1 A ALA 73 -176.27 -179.79 C 1 A ARG 74 174.18 146.53 E 1 A ASP 74 83.64 35.81 H 1 A ALA 74 -170.43 138.61 THE ELECTRON DENSITY MAP WITHOUT THE PHASE CONTRIBUTION OF RESIDUES ALA 73, VAL 74 AND THE INSERTED AMINO ACIDS DID NOT SHOW SIGNIFICANT ELECTRON DENSITIES FOR THE RESIDUES FROM ALA 73 TO PRO 74G, BUT THE MAP CLEARLY SHOWED THE ELECTRON DENSITY OF ALA 74H. THE REFINED B FACTORS OF THE RESIDUES ALA 73 TO PRO 74G ARE LARGE WITH POORLY DEFINED POSITIONAL PARAMETERS. 0.152 1.8 6.0 10586 1 1.8 6.0 160 1243 2 0 1081 0.014 0.014 0.037 0.037 refinement PROLSQ LYSOZYME (E.C.3.2.1.17) MUTANT WITH EIGHT AMINO ACID RESIDUES (THR 74A, GLY 74B, ARG 74C, GLY 74D, ASP 74E, SER 74F, PRO 74G AND ALA 74H) INSERTED BETWEEN VAL 74 AND ASN 75 STRUCTURAL AND FUNCTIONAL ANALYSES OF THE ARG-GLY-ASP SEQUENCE INTRODUCED INTO HUMAN LYSOZYME 1 N N 2 N N 2 N N 3 N N A ARG 5 A ARG 5 HELX_P A ARG 14 A ARG 14 1 A 10 A LEU 25 A LEU 25 HELX_P A GLU 35 A GLU 35 1 B 11 A SER 80 A SER 88 HELX_P A LEU 85 A LEU 93 5 E 6 A ALA 90 A ALA 98 HELX_P A VAL 99 A VAL 107 1 C 10 A VAL 110 A VAL 118 HELX_P A CYS 116 A CYS 124 1 D 7 disulf 2.045 A CYS 6 A SG CYS 6 1_555 A CYS 128 A SG CYS 136 1_555 disulf 2.022 A CYS 30 A SG CYS 30 1_555 A CYS 116 A SG CYS 124 1_555 disulf 2.079 A CYS 65 A SG CYS 65 1_555 A CYS 81 A SG CYS 89 1_555 disulf 1.997 A CYS 77 A SG CYS 85 1_555 A CYS 95 A SG CYS 103 1_555 HYDROLASE(O-GLYCOSYL) HYDROLASE(O-GLYCOSYL) LYSC_HUMAN UNP 1 1 P61626 MKALIVLGLVLLSVTVQGKVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSR YWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV 19 140 1LZ6 1 122 P61626 A 1 1 130 1 INSERTION THR 74 1LZ6 A A P61626 UNP 75 1 INSERTION GLY 74 1LZ6 B A P61626 UNP 76 1 INSERTION ARG 74 1LZ6 C A P61626 UNP 77 1 INSERTION GLY 74 1LZ6 D A P61626 UNP 78 1 INSERTION ASP 74 1LZ6 E A P61626 UNP 79 1 INSERTION SER 74 1LZ6 F A P61626 UNP 80 1 INSERTION PRO 74 1LZ6 G A P61626 UNP 81 1 INSERTION ALA 74 1LZ6 H A P61626 UNP 82 2 3 anti-parallel anti-parallel anti-parallel A LYS 1 A LYS 1 A PHE 3 A PHE 3 A TYR 38 A TYR 38 A THR 40 A THR 40 A ALA 42 A ALA 42 A ASN 46 A ASN 46 A SER 51 A SER 51 A GLY 55 A GLY 55 A ILE 59 A ILE 59 A SER 61 A SER 61 BINDING SITE FOR RESIDUE CL A 131 Software 2 BINDING SITE FOR RESIDUE CL A 132 Software 2 A SER 80 A SER 88 2 1_555 A ARG 107 A ARG 115 2 4_457 A ASN 27 A ASN 27 2 4_457 A ASN 66 A ASN 66 2 1_555 19 P 21 21 21