1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Capasso, C.
Carginale, V.
Crescenzi, O.
Di Maro, D.
Parisi, E.
Spadaccini, R.
Temussi, P.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cd 2
112.411
CADMIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
11
435
443
10.1016/S0969-2126(03)00044-3
12679021
Solution Structure of MT_nc, a Novel Metallothionein from the Antarctic Fish Notothenia coriiceps.
2003
10.2210/pdb1m0g/pdb
pdb_00001m0g
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
2970.558
metallothionein MT_nc
alpha domain
1
man
polymer
112.411
CADMIUM ION
4
syn
non-polymer
metallothionein A
no
no
SCCPCCPSGCTKCASGCVCKGKTCDTSCCQ
SCCPCCPSGCTKCASGCVCKGKTCDTSCCQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
yellowbelly rockcod
Notothenia
Escherichia
Escherichia coli
sample
8208
Notothenia coriiceps
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pCR2.1-TOPO
PGEM-MT
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-05-06
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1M0J contains beta domain of the same protein
RCSB
Y
PDBJ
2002-06-13
REL
REL
CD
CADMIUM ION
all calculated structures submitted
20
20
2D NOESY
2D TOCSY
E-COSY
DQF-COSY
[113Cd,1H]COSY
7
ambient
293
K
the structures are based on a total of 373 NOEs,16 Cd-S bonds and 40 dihedral angle restraints
torsion angle dynamics
1
fewest violations
2mM metallothoinein; 95% H2O, 5% D2O
95% H2O/5% D2O
2mM metallothoinein, U-113Cd; 95% H2O, 5% D2O
95% H2O/5% D2O
Delaglio
processing
NMRPipe
Johnsonn
data analysis
NMRView
4.0.3
Guentert
structure solution
DYANA
1.5
Guentert
refinement
DYANA
1.5
400
Bruker
AVANCE
600
Bruker
AVANCE
CYS
39
2
CD
CD
101
A
CYS
49
2
CD
CD
102
A
CYS
55
2
CD
CD
103
A
CYS
65
2
CD
CD
104
A
SER
37
n
1
SER
37
A
CYS
38
n
2
CYS
38
A
CYS
39
n
3
CYS
39
A
PRO
40
n
4
PRO
40
A
CYS
41
n
5
CYS
41
A
CYS
42
n
6
CYS
42
A
PRO
43
n
7
PRO
43
A
SER
44
n
8
SER
44
A
GLY
45
n
9
GLY
45
A
CYS
46
n
10
CYS
46
A
THR
47
n
11
THR
47
A
LYS
48
n
12
LYS
48
A
CYS
49
n
13
CYS
49
A
ALA
50
n
14
ALA
50
A
SER
51
n
15
SER
51
A
GLY
52
n
16
GLY
52
A
CYS
53
n
17
CYS
53
A
VAL
54
n
18
VAL
54
A
CYS
55
n
19
CYS
55
A
LYS
56
n
20
LYS
56
A
GLY
57
n
21
GLY
57
A
LYS
58
n
22
LYS
58
A
THR
59
n
23
THR
59
A
CYS
60
n
24
CYS
60
A
ASP
61
n
25
ASP
61
A
THR
62
n
26
THR
62
A
SER
63
n
27
SER
63
A
CYS
64
n
28
CYS
64
A
CYS
65
n
29
CYS
65
A
GLN
66
n
30
GLN
66
A
author_defined_assembly
1
monomeric
A
CYS
38
A
SG
CYS
2
1_555
A
CD
101
B
CD
CD
1_555
A
CYS
39
A
SG
CYS
3
1_555
112.2
A
CYS
38
A
SG
CYS
2
1_555
A
CD
101
B
CD
CD
1_555
A
CYS
49
A
SG
CYS
13
1_555
115.9
A
CYS
39
A
SG
CYS
3
1_555
A
CD
101
B
CD
CD
1_555
A
CYS
49
A
SG
CYS
13
1_555
114.7
A
CYS
38
A
SG
CYS
2
1_555
A
CD
101
B
CD
CD
1_555
A
CYS
53
A
SG
CYS
17
1_555
99.5
A
CYS
39
A
SG
CYS
3
1_555
A
CD
101
B
CD
CD
1_555
A
CYS
53
A
SG
CYS
17
1_555
107.9
A
CYS
49
A
SG
CYS
13
1_555
A
CD
101
B
CD
CD
1_555
A
CYS
53
A
SG
CYS
17
1_555
104.8
A
CYS
39
A
SG
CYS
3
1_555
A
CD
103
D
CD
CD
1_555
A
CYS
41
A
SG
CYS
5
1_555
131.6
A
CYS
39
A
SG
CYS
3
1_555
A
CD
103
D
CD
CD
1_555
A
CYS
42
A
SG
CYS
6
1_555
102.4
A
CYS
41
A
SG
CYS
5
1_555
A
CD
103
D
CD
CD
1_555
A
CYS
42
A
SG
CYS
6
1_555
105.1
A
CYS
39
A
SG
CYS
3
1_555
A
CD
103
D
CD
CD
1_555
A
CYS
55
A
SG
CYS
19
1_555
103.6
A
CYS
41
A
SG
CYS
5
1_555
A
CD
103
D
CD
CD
1_555
A
CYS
55
A
SG
CYS
19
1_555
111.6
A
CYS
42
A
SG
CYS
6
1_555
A
CD
103
D
CD
CD
1_555
A
CYS
55
A
SG
CYS
19
1_555
96.8
A
CYS
42
A
SG
CYS
6
1_555
A
CD
102
C
CD
CD
1_555
A
CYS
46
A
SG
CYS
10
1_555
111.8
A
CYS
42
A
SG
CYS
6
1_555
A
CD
102
C
CD
CD
1_555
A
CYS
49
A
SG
CYS
13
1_555
119.3
A
CYS
46
A
SG
CYS
10
1_555
A
CD
102
C
CD
CD
1_555
A
CYS
49
A
SG
CYS
13
1_555
110.7
A
CYS
42
A
SG
CYS
6
1_555
A
CD
102
C
CD
CD
1_555
A
CYS
65
A
SG
CYS
29
1_555
107.2
A
CYS
46
A
SG
CYS
10
1_555
A
CD
102
C
CD
CD
1_555
A
CYS
65
A
SG
CYS
29
1_555
97.7
A
CYS
49
A
SG
CYS
13
1_555
A
CD
102
C
CD
CD
1_555
A
CYS
65
A
SG
CYS
29
1_555
107.7
A
CYS
55
A
SG
CYS
19
1_555
A
CD
104
E
CD
CD
1_555
A
CYS
60
A
SG
CYS
24
1_555
112.8
A
CYS
55
A
SG
CYS
19
1_555
A
CD
104
E
CD
CD
1_555
A
CYS
64
A
SG
CYS
28
1_555
115.5
A
CYS
60
A
SG
CYS
24
1_555
A
CD
104
E
CD
CD
1_555
A
CYS
64
A
SG
CYS
28
1_555
120.9
A
CYS
55
A
SG
CYS
19
1_555
A
CD
104
E
CD
CD
1_555
A
CYS
65
A
SG
CYS
29
1_555
98.0
A
CYS
60
A
SG
CYS
24
1_555
A
CD
104
E
CD
CD
1_555
A
CYS
65
A
SG
CYS
29
1_555
99.7
A
CYS
64
A
SG
CYS
28
1_555
A
CD
104
E
CD
CD
1_555
A
CYS
65
A
SG
CYS
29
1_555
105.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
7
A
A
O
H
PRO
GLY
43
45
1.59
9
A
A
O
H
ASP
CYS
61
64
1.49
10
A
A
O
H
ASP
CYS
61
64
1.53
11
A
A
O
H
ASP
CYS
61
64
1.54
11
A
A
HZ3
O
LYS
CYS
48
64
1.56
17
A
A
O
H
ASP
SER
61
63
1.36
18
A
A
O
H
ASP
CYS
61
64
1.53
18
A
A
O
H
CYS
GLN
64
66
1.58
19
A
A
O
H
ASP
CYS
61
64
1.50
20
A
A
O
H
ASP
SER
61
63
1.46
1
A
CYS
38
-125.93
-74.61
1
A
SER
44
-68.84
60.80
1
A
CYS
46
46.21
98.57
1
A
CYS
53
-174.43
111.03
1
A
THR
59
-47.76
-95.06
1
A
CYS
60
-179.56
82.60
1
A
ASP
61
-125.82
-167.20
1
A
CYS
64
-131.88
-79.74
2
A
SER
44
-68.66
61.10
2
A
CYS
46
40.37
91.91
2
A
CYS
53
61.73
111.79
2
A
THR
59
-84.75
-95.73
2
A
CYS
60
178.28
82.89
2
A
ASP
61
-126.71
-169.86
2
A
CYS
64
-130.26
-79.97
3
A
CYS
46
45.71
97.14
3
A
THR
59
-79.71
-97.38
3
A
CYS
60
179.95
81.29
3
A
ASP
61
-127.33
-167.83
3
A
CYS
64
-131.83
-78.93
4
A
CYS
38
-128.13
-74.74
4
A
SER
44
-69.30
60.12
4
A
CYS
46
45.40
97.56
4
A
THR
59
-58.31
-89.71
4
A
CYS
60
179.21
79.08
4
A
ASP
61
-126.26
-168.64
4
A
CYS
64
-131.46
-80.47
5
A
CYS
46
41.61
93.75
5
A
CYS
53
-178.08
110.58
5
A
THR
59
-48.37
-100.10
5
A
CYS
60
179.84
82.27
5
A
ASP
61
-125.11
-166.78
5
A
CYS
64
-131.86
-79.23
6
A
CYS
38
-158.41
-73.21
6
A
SER
44
-69.01
63.32
6
A
CYS
46
42.31
96.08
6
A
CYS
53
62.16
112.67
6
A
THR
59
-67.87
-89.34
6
A
CYS
60
178.07
82.37
6
A
ASP
61
-129.42
-168.14
6
A
CYS
64
-131.13
-79.11
7
A
CYS
38
-110.56
-75.66
7
A
SER
44
-68.92
58.80
7
A
CYS
46
36.51
89.44
7
A
CYS
53
178.82
105.85
7
A
THR
59
-64.78
-94.91
7
A
CYS
60
179.33
88.32
7
A
CYS
64
-130.52
-87.70
8
A
SER
44
-68.58
63.87
8
A
CYS
46
40.66
93.35
8
A
CYS
53
-178.54
113.48
8
A
LYS
56
-38.17
-81.70
8
A
THR
59
-80.95
-96.14
8
A
CYS
60
173.35
73.50
8
A
CYS
64
-129.43
-78.08
9
A
CYS
46
51.02
105.01
9
A
CYS
53
-179.13
109.91
9
A
THR
59
-84.66
-95.01
9
A
CYS
60
178.30
74.24
9
A
ASP
61
-118.45
-168.58
9
A
CYS
65
70.69
-53.56
10
A
CYS
38
-165.40
-45.07
10
A
CYS
46
43.78
94.89
10
A
THR
59
-85.87
-93.24
10
A
CYS
60
176.16
79.52
10
A
ASP
61
-123.05
-167.08
10
A
CYS
65
69.30
-52.35
11
A
CYS
38
-134.75
-55.82
11
A
CYS
46
48.37
100.08
11
A
CYS
53
62.63
116.33
11
A
THR
59
-92.25
-114.78
11
A
CYS
60
179.29
75.01
11
A
ASP
61
-125.87
-161.22
11
A
CYS
64
-125.36
-144.52
12
A
CYS
38
-148.76
-73.35
12
A
SER
44
-69.12
61.30
12
A
CYS
46
42.60
95.69
12
A
CYS
53
62.20
112.73
12
A
LYS
58
-64.49
-178.13
12
A
THR
59
-73.56
-86.81
12
A
CYS
60
177.06
83.18
12
A
ASP
61
-128.37
-169.14
12
A
CYS
64
-129.24
-78.15
13
A
CYS
38
-165.25
-45.46
13
A
CYS
46
46.07
97.52
13
A
CYS
53
-177.78
110.41
13
A
THR
59
-65.97
-85.74
13
A
CYS
60
178.18
78.95
13
A
ASP
61
-128.01
-167.43
13
A
CYS
64
-131.07
-79.41
14
A
CYS
39
-172.35
140.33
14
A
CYS
46
48.50
99.24
14
A
CYS
53
-178.23
108.92
14
A
THR
59
-48.35
-98.76
14
A
CYS
60
179.99
83.46
14
A
ASP
61
-126.19
-166.82
14
A
CYS
64
-131.05
-83.76
15
A
CYS
38
-165.32
-45.67
15
A
CYS
39
-172.17
139.75
15
A
CYS
46
46.46
97.50
15
A
CYS
53
-48.14
108.48
15
A
THR
59
-47.98
-98.09
15
A
CYS
60
-179.63
83.50
15
A
ASP
61
-124.80
-165.72
15
A
CYS
64
-131.31
-79.35
16
A
CYS
38
-52.40
-74.09
16
A
SER
44
-69.28
59.99
16
A
CYS
46
48.60
100.80
16
A
CYS
53
-171.11
111.75
16
A
THR
59
-57.88
-93.62
16
A
CYS
60
179.59
79.38
16
A
ASP
61
-120.14
-169.26
16
A
CYS
64
-130.20
-75.38
17
A
CYS
46
50.60
101.29
17
A
CYS
53
-178.45
114.05
17
A
THR
59
-36.06
-94.41
17
A
CYS
60
140.86
101.81
17
A
ASP
61
-168.46
107.39
17
A
THR
62
61.76
-39.93
17
A
CYS
64
-141.83
-143.32
18
A
CYS
39
-172.40
141.62
18
A
CYS
46
44.92
96.21
18
A
CYS
53
-47.10
109.48
18
A
THR
59
-51.10
-90.57
18
A
CYS
60
177.67
75.69
18
A
ASP
61
-119.21
-167.24
18
A
CYS
65
68.43
-54.01
19
A
CYS
38
-136.09
-74.58
19
A
SER
44
-91.23
49.88
19
A
CYS
53
-178.27
111.92
19
A
THR
59
-56.74
-89.86
19
A
CYS
60
178.75
77.04
19
A
ASP
61
-121.25
-167.53
19
A
CYS
65
70.56
-54.46
20
A
CYS
38
-155.15
-73.43
20
A
SER
44
-69.61
59.18
20
A
CYS
46
53.34
109.97
20
A
THR
59
-48.97
-101.68
20
A
CYS
60
148.04
90.32
20
A
THR
62
63.60
-36.27
20
A
CYS
64
-140.80
-141.00
Solution structure of the alpha domain of mt_nc
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
A
CYS
46
A
CYS
10
HELX_P
A
SER
51
A
SER
15
1
1
6
A
CYS
53
A
CYS
17
HELX_P
A
GLY
57
A
GLY
21
5
2
5
metalc
2.488
A
CYS
38
A
SG
CYS
2
1_555
A
CD
101
B
CD
CD
1_555
metalc
2.599
A
CYS
39
A
SG
CYS
3
1_555
A
CD
101
B
CD
CD
1_555
metalc
2.342
A
CYS
39
A
SG
CYS
3
1_555
A
CD
103
D
CD
CD
1_555
metalc
2.269
A
CYS
41
A
SG
CYS
5
1_555
A
CD
103
D
CD
CD
1_555
metalc
2.293
A
CYS
42
A
SG
CYS
6
1_555
A
CD
102
C
CD
CD
1_555
metalc
2.620
A
CYS
42
A
SG
CYS
6
1_555
A
CD
103
D
CD
CD
1_555
metalc
2.515
A
CYS
46
A
SG
CYS
10
1_555
A
CD
102
C
CD
CD
1_555
metalc
2.408
A
CYS
49
A
SG
CYS
13
1_555
A
CD
101
B
CD
CD
1_555
metalc
2.598
A
CYS
49
A
SG
CYS
13
1_555
A
CD
102
C
CD
CD
1_555
metalc
2.604
A
CYS
53
A
SG
CYS
17
1_555
A
CD
101
B
CD
CD
1_555
metalc
2.598
A
CYS
55
A
SG
CYS
19
1_555
A
CD
103
D
CD
CD
1_555
metalc
2.552
A
CYS
55
A
SG
CYS
19
1_555
A
CD
104
E
CD
CD
1_555
metalc
2.496
A
CYS
60
A
SG
CYS
24
1_555
A
CD
104
E
CD
CD
1_555
metalc
2.300
A
CYS
64
A
SG
CYS
28
1_555
A
CD
104
E
CD
CD
1_555
metalc
2.620
A
CYS
65
A
SG
CYS
29
1_555
A
CD
102
C
CD
CD
1_555
metalc
2.598
A
CYS
65
A
SG
CYS
29
1_555
A
CD
104
E
CD
CD
1_555
METAL BINDING PROTEIN
Cadmium-thiolate cluster, METAL BINDING PROTEIN
MTA_NOTCO
UNP
1
31
P62339
SCCPCCPSGCTKCASGCVCKGKTCDTSCCQ
31
60
1M0G
37
66
P62339
A
1
1
30
BINDING SITE FOR RESIDUE CD A 101
A
CD
101
Software
5
BINDING SITE FOR RESIDUE CD A 102
A
CD
102
Software
5
BINDING SITE FOR RESIDUE CD A 103
A
CD
103
Software
4
BINDING SITE FOR RESIDUE CD A 104
A
CD
104
Software
4
A
CYS
38
A
CYS
2
5
1_555
A
CYS
39
A
CYS
3
5
1_555
A
CYS
49
A
CYS
13
5
1_555
A
CYS
53
A
CYS
17
5
1_555
A
CYS
55
A
CYS
19
5
1_555
A
CYS
42
A
CYS
6
5
1_555
A
CYS
46
A
CYS
10
5
1_555
A
CYS
49
A
CYS
13
5
1_555
A
CYS
55
A
CYS
19
5
1_555
A
CYS
65
A
CYS
29
5
1_555
A
CYS
39
A
CYS
3
4
1_555
A
CYS
41
A
CYS
5
4
1_555
A
CYS
42
A
CYS
6
4
1_555
A
CYS
55
A
CYS
19
4
1_555
A
CYS
55
A
CYS
19
4
1_555
A
CYS
60
A
CYS
24
4
1_555
A
CYS
64
A
CYS
28
4
1_555
A
CYS
65
A
CYS
29
4
1_555