1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Capasso, C. Carginale, V. Crescenzi, O. Di Maro, D. Parisi, E. Spadaccini, R. Temussi, P.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cd 2 112.411 CADMIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking UK Structure STRUE6 2005 0969-2126 11 435 443 10.1016/S0969-2126(03)00044-3 12679021 Solution Structure of MT_nc, a Novel Metallothionein from the Antarctic Fish Notothenia coriiceps. 2003 10.2210/pdb1m0j/pdb pdb_00001m0j 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 2813.218 metallothionein MT_nc beta domain 1 man polymer 112.411 CADMIUM ION 3 syn non-polymer metallothionein A no no DPCECSKSGTCNCGGSCTCTNCSCKSCK DPCECSKSGTCNCGGSCTCTNCSCKSCK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n yellowbelly rockcod Notothenia Escherichia Escherichia coli sample 8208 Notothenia coriiceps 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pCR2.1-TOPO PGEM-MT database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-05-06 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1M0G contains alpha domain of the same protein RCSB Y PDBJ 2002-06-13 REL REL CD CADMIUM ION all calculated structures submitted 20 20 2D NOESY 2D TOCSY E-COSY DQF-COSY [113Cd,1H]COSY 7 ambient 293 K the structures are based on a total of 253 NOEs, 12 Cd-S bonds and 63 dihedral angle constraints torsion angle dynamics 1 fewest violations 2mM metallothionein; 95% H2O, 5% D2O 95% H2O/5% D2O metallothionein, U-113Cd; 95% H2O, 5% D2O 95% H2O/5% D2O Delaglio processing NMRPipe Johnsonn data analysis NMRView 4.0.3 Guentert structure solution DYANA 1.5 Guentert refinement DYANA 1.5 400 Bruker DRX 600 Bruker DRX CYS 12 2 CD CD 101 A CYS 20 2 CD CD 102 A CYS 29 2 CD CD 103 A ASP 8 n 1 ASP 8 A PRO 9 n 2 PRO 9 A CYS 10 n 3 CYS 10 A GLU 11 n 4 GLU 11 A CYS 12 n 5 CYS 12 A SER 13 n 6 SER 13 A LYS 14 n 7 LYS 14 A SER 15 n 8 SER 15 A GLY 16 n 9 GLY 16 A THR 17 n 10 THR 17 A CYS 18 n 11 CYS 18 A ASN 19 n 12 ASN 19 A CYS 20 n 13 CYS 20 A GLY 21 n 14 GLY 21 A GLY 22 n 15 GLY 22 A SER 23 n 16 SER 23 A CYS 24 n 17 CYS 24 A THR 25 n 18 THR 25 A CYS 26 n 19 CYS 26 A THR 27 n 20 THR 27 A ASN 28 n 21 ASN 28 A CYS 29 n 22 CYS 29 A SER 30 n 23 SER 30 A CYS 31 n 24 CYS 31 A LYS 32 n 25 LYS 32 A SER 33 n 26 SER 33 A CYS 34 n 27 CYS 34 A LYS 35 n 28 LYS 35 A author_defined_assembly 1 monomeric A CYS 10 A SG CYS 3 1_555 A CD 103 D CD CD 1_555 A CYS 12 A SG CYS 5 1_555 131.0 A CYS 10 A SG CYS 3 1_555 A CD 103 D CD CD 1_555 A CYS 26 A SG CYS 19 1_555 106.4 A CYS 12 A SG CYS 5 1_555 A CD 103 D CD CD 1_555 A CYS 26 A SG CYS 19 1_555 106.9 A CYS 10 A SG CYS 3 1_555 A CD 103 D CD CD 1_555 A CYS 29 A SG CYS 22 1_555 105.4 A CYS 12 A SG CYS 5 1_555 A CD 103 D CD CD 1_555 A CYS 29 A SG CYS 22 1_555 104.6 A CYS 26 A SG CYS 19 1_555 A CD 103 D CD CD 1_555 A CYS 29 A SG CYS 22 1_555 97.7 A CYS 12 A SG CYS 5 1_555 A CD 101 B CD CD 1_555 A CYS 18 A SG CYS 11 1_555 109.9 A CYS 12 A SG CYS 5 1_555 A CD 101 B CD CD 1_555 A CYS 20 A SG CYS 13 1_555 97.6 A CYS 18 A SG CYS 11 1_555 A CD 101 B CD CD 1_555 A CYS 20 A SG CYS 13 1_555 101.7 A CYS 12 A SG CYS 5 1_555 A CD 101 B CD CD 1_555 A CYS 31 A SG CYS 24 1_555 105.4 A CYS 18 A SG CYS 11 1_555 A CD 101 B CD CD 1_555 A CYS 31 A SG CYS 24 1_555 120.8 A CYS 20 A SG CYS 13 1_555 A CD 101 B CD CD 1_555 A CYS 31 A SG CYS 24 1_555 119.1 A CYS 20 A SG CYS 13 1_555 A CD 102 C CD CD 1_555 A CYS 24 A SG CYS 17 1_555 115.9 A CYS 20 A SG CYS 13 1_555 A CD 102 C CD CD 1_555 A CYS 29 A SG CYS 22 1_555 100.0 A CYS 24 A SG CYS 17 1_555 A CD 102 C CD CD 1_555 A CYS 29 A SG CYS 22 1_555 112.7 A CYS 20 A SG CYS 13 1_555 A CD 102 C CD CD 1_555 A CYS 34 A SG CYS 27 1_555 110.2 A CYS 24 A SG CYS 17 1_555 A CD 102 C CD CD 1_555 A CYS 34 A SG CYS 27 1_555 116.2 A CYS 29 A SG CYS 22 1_555 A CD 102 C CD CD 1_555 A CYS 34 A SG CYS 27 1_555 99.3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 8 A A O H SER GLY 13 16 1.39 19 A A O H SER GLY 13 16 1.45 1 A LYS 14 -64.38 -73.74 1 A ASN 19 -146.69 54.41 1 A THR 25 -132.91 -41.75 1 A SER 30 -170.45 45.74 1 A CYS 34 -144.28 -48.34 2 A LYS 14 72.01 -59.22 2 A SER 15 -38.70 -34.68 2 A ASN 19 -144.20 52.45 2 A CYS 20 -88.12 33.17 2 A ASN 28 -117.62 67.63 2 A SER 30 -167.98 53.29 2 A CYS 34 -130.45 -49.18 3 A LYS 14 85.24 -54.98 3 A SER 15 -38.14 -31.62 3 A ASN 19 -146.19 52.95 3 A SER 30 -175.15 68.75 3 A CYS 31 -121.11 -73.27 3 A LYS 32 -178.51 137.12 3 A SER 33 81.09 9.31 4 A CYS 12 -67.77 -71.20 4 A THR 17 -178.92 138.15 4 A ASN 19 -142.50 52.40 4 A SER 23 -176.37 94.85 4 A SER 30 -165.43 49.79 4 A CYS 31 -89.62 -91.75 4 A LYS 32 -178.99 139.59 5 A CYS 12 -70.75 -72.47 5 A THR 17 179.40 126.38 5 A SER 30 -157.78 34.51 5 A CYS 31 -78.10 -90.02 6 A CYS 10 63.25 141.59 6 A LYS 14 -73.43 -91.91 6 A CYS 20 -107.53 42.60 6 A SER 30 -176.69 -27.90 6 A CYS 31 -35.90 134.54 6 A CYS 34 -108.69 -63.43 7 A CYS 18 -47.39 100.03 7 A THR 25 -161.47 -41.68 7 A SER 30 -175.04 34.22 7 A CYS 31 -68.95 -98.79 7 A LYS 32 166.33 -30.79 7 A CYS 34 -133.89 -51.62 8 A CYS 10 56.94 164.61 8 A CYS 12 -91.05 -75.74 8 A LYS 14 -29.03 -43.31 8 A SER 15 -36.37 -31.90 8 A THR 17 82.96 137.47 8 A CYS 18 -41.08 154.28 8 A ASN 19 -147.19 57.01 8 A CYS 20 -87.12 31.78 8 A ASN 28 56.07 73.60 8 A SER 30 -176.05 63.53 8 A CYS 34 -144.24 -48.69 9 A GLU 11 -36.88 -31.90 9 A LYS 14 -120.20 -70.77 9 A THR 17 73.54 148.90 9 A ASN 19 -146.66 54.60 9 A CYS 20 -95.88 33.38 9 A ASN 28 39.58 62.60 9 A SER 30 -174.40 33.92 9 A CYS 31 -75.64 -76.62 9 A LYS 32 160.45 146.38 10 A CYS 12 -74.70 -72.00 10 A LYS 14 79.77 -48.73 10 A THR 17 77.75 149.53 10 A ASN 19 -154.47 59.03 10 A CYS 20 -94.30 32.15 10 A CYS 26 -52.71 171.54 10 A SER 30 -172.73 60.45 10 A CYS 31 -94.43 -94.88 10 A LYS 32 -176.35 -37.70 11 A GLU 11 -88.71 49.42 11 A THR 25 -135.84 -41.21 11 A CYS 26 -49.01 150.95 11 A SER 30 -165.48 31.16 12 A CYS 18 -63.45 91.21 12 A SER 30 -164.25 37.55 12 A CYS 31 -118.87 -150.44 12 A LYS 32 -124.16 -158.80 12 A SER 33 47.84 22.05 12 A CYS 34 -157.17 -47.17 13 A CYS 10 58.75 162.33 13 A GLU 11 -94.79 59.43 13 A LYS 14 71.39 -58.47 13 A CYS 18 -47.68 108.46 13 A SER 23 -61.24 94.38 13 A ASN 28 46.49 70.23 13 A SER 30 -165.96 58.03 13 A CYS 34 -148.52 -47.99 14 A CYS 10 65.65 152.30 14 A GLU 11 -89.50 44.19 14 A CYS 12 -69.58 -77.05 14 A LYS 14 79.37 -55.67 14 A ASN 19 -142.40 53.31 14 A CYS 20 -85.63 31.37 14 A LYS 32 -104.02 -153.66 14 A SER 33 57.19 15.58 14 A CYS 34 -161.88 -52.80 15 A THR 17 60.47 143.70 15 A CYS 20 -87.40 31.84 15 A SER 23 -163.45 87.79 15 A ASN 28 33.40 54.73 15 A SER 30 -176.52 34.65 15 A LYS 32 171.08 140.70 15 A CYS 34 -130.52 -55.67 16 A SER 13 164.50 -30.43 16 A LYS 14 72.14 -57.61 16 A ASN 28 -88.66 47.27 16 A SER 30 -174.13 53.95 16 A CYS 31 -103.22 -73.31 16 A LYS 32 -179.23 137.29 17 A GLU 11 -67.66 76.37 17 A CYS 12 -73.17 -71.39 17 A LYS 14 84.41 -55.17 17 A ASN 19 -152.93 59.60 17 A SER 23 67.86 162.22 17 A ASN 28 39.06 31.89 17 A SER 30 -169.72 63.22 17 A CYS 31 -105.28 -87.37 17 A LYS 32 -176.20 139.89 17 A CYS 34 -130.50 -48.63 18 A CYS 10 83.19 143.40 18 A LYS 14 -66.17 -74.16 18 A CYS 18 -50.60 103.86 18 A SER 23 -58.33 86.37 18 A THR 25 -136.96 -42.33 18 A CYS 26 -49.75 165.54 18 A ASN 28 43.59 76.54 18 A SER 30 -145.83 17.42 18 A CYS 34 -142.81 -48.07 19 A CYS 12 -92.13 -81.15 19 A SER 15 -38.04 -30.55 19 A THR 17 66.47 117.12 19 A CYS 18 -40.05 157.61 19 A ASN 19 -149.23 58.83 19 A CYS 20 -84.93 31.27 19 A SER 30 -174.83 79.24 19 A CYS 34 -144.78 -46.46 20 A LYS 14 -58.18 -89.68 20 A SER 23 -163.29 106.66 20 A SER 30 -165.21 29.15 20 A CYS 34 -140.49 -49.09 solution structure of the beta domain of mt_nc 1 N N 2 N N 2 N N 2 N N A CYS 10 A CYS 3 HELX_P A GLY 16 A GLY 9 1 1 7 metalc 2.299 A CYS 10 A SG CYS 3 1_555 A CD 103 D CD CD 1_555 metalc 2.599 A CYS 12 A SG CYS 5 1_555 A CD 101 B CD CD 1_555 metalc 2.321 A CYS 12 A SG CYS 5 1_555 A CD 103 D CD CD 1_555 metalc 2.536 A CYS 18 A SG CYS 11 1_555 A CD 101 B CD CD 1_555 metalc 2.579 A CYS 20 A SG CYS 13 1_555 A CD 101 B CD CD 1_555 metalc 2.600 A CYS 20 A SG CYS 13 1_555 A CD 102 C CD CD 1_555 metalc 2.293 A CYS 24 A SG CYS 17 1_555 A CD 102 C CD CD 1_555 metalc 2.567 A CYS 26 A SG CYS 19 1_555 A CD 103 D CD CD 1_555 metalc 2.598 A CYS 29 A SG CYS 22 1_555 A CD 102 C CD CD 1_555 metalc 2.599 A CYS 29 A SG CYS 22 1_555 A CD 103 D CD CD 1_555 metalc 2.297 A CYS 31 A SG CYS 24 1_555 A CD 101 B CD CD 1_555 metalc 2.524 A CYS 34 A SG CYS 27 1_555 A CD 102 C CD CD 1_555 METAL BINDING PROTEIN cadmium thiolate-cluster, METAL BINDING PROTEIN MTA_NOTCO UNP 1 2 P62339 DPCECSKSGTCNCGGSCTCTNCSCKSCK 2 29 1M0J 8 35 P62339 A 1 1 28 BINDING SITE FOR RESIDUE CD A 101 A CD 101 Software 4 BINDING SITE FOR RESIDUE CD A 102 A CD 102 Software 4 BINDING SITE FOR RESIDUE CD A 103 A CD 103 Software 4 A CYS 12 A CYS 5 4 1_555 A CYS 18 A CYS 11 4 1_555 A CYS 20 A CYS 13 4 1_555 A CYS 31 A CYS 24 4 1_555 A CYS 20 A CYS 13 4 1_555 A CYS 24 A CYS 17 4 1_555 A CYS 29 A CYS 22 4 1_555 A CYS 34 A CYS 27 4 1_555 A CYS 10 A CYS 3 4 1_555 A CYS 12 A CYS 5 4 1_555 A CYS 26 A CYS 19 4 1_555 A CYS 29 A CYS 22 4 1_555