1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Capasso, C.
Carginale, V.
Crescenzi, O.
Di Maro, D.
Parisi, E.
Spadaccini, R.
Temussi, P.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cd 2
112.411
CADMIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
11
435
443
10.1016/S0969-2126(03)00044-3
12679021
Solution Structure of MT_nc, a Novel Metallothionein from the Antarctic Fish Notothenia coriiceps.
2003
10.2210/pdb1m0j/pdb
pdb_00001m0j
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
2813.218
metallothionein MT_nc
beta domain
1
man
polymer
112.411
CADMIUM ION
3
syn
non-polymer
metallothionein A
no
no
DPCECSKSGTCNCGGSCTCTNCSCKSCK
DPCECSKSGTCNCGGSCTCTNCSCKSCK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
yellowbelly rockcod
Notothenia
Escherichia
Escherichia coli
sample
8208
Notothenia coriiceps
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pCR2.1-TOPO
PGEM-MT
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-05-06
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1M0G contains alpha domain of the same protein
RCSB
Y
PDBJ
2002-06-13
REL
REL
CD
CADMIUM ION
all calculated structures submitted
20
20
2D NOESY
2D TOCSY
E-COSY
DQF-COSY
[113Cd,1H]COSY
7
ambient
293
K
the structures are based on a total of 253 NOEs, 12 Cd-S bonds and 63 dihedral angle constraints
torsion angle dynamics
1
fewest violations
2mM metallothionein; 95% H2O, 5% D2O
95% H2O/5% D2O
metallothionein, U-113Cd; 95% H2O, 5% D2O
95% H2O/5% D2O
Delaglio
processing
NMRPipe
Johnsonn
data analysis
NMRView
4.0.3
Guentert
structure solution
DYANA
1.5
Guentert
refinement
DYANA
1.5
400
Bruker
DRX
600
Bruker
DRX
CYS
12
2
CD
CD
101
A
CYS
20
2
CD
CD
102
A
CYS
29
2
CD
CD
103
A
ASP
8
n
1
ASP
8
A
PRO
9
n
2
PRO
9
A
CYS
10
n
3
CYS
10
A
GLU
11
n
4
GLU
11
A
CYS
12
n
5
CYS
12
A
SER
13
n
6
SER
13
A
LYS
14
n
7
LYS
14
A
SER
15
n
8
SER
15
A
GLY
16
n
9
GLY
16
A
THR
17
n
10
THR
17
A
CYS
18
n
11
CYS
18
A
ASN
19
n
12
ASN
19
A
CYS
20
n
13
CYS
20
A
GLY
21
n
14
GLY
21
A
GLY
22
n
15
GLY
22
A
SER
23
n
16
SER
23
A
CYS
24
n
17
CYS
24
A
THR
25
n
18
THR
25
A
CYS
26
n
19
CYS
26
A
THR
27
n
20
THR
27
A
ASN
28
n
21
ASN
28
A
CYS
29
n
22
CYS
29
A
SER
30
n
23
SER
30
A
CYS
31
n
24
CYS
31
A
LYS
32
n
25
LYS
32
A
SER
33
n
26
SER
33
A
CYS
34
n
27
CYS
34
A
LYS
35
n
28
LYS
35
A
author_defined_assembly
1
monomeric
A
CYS
10
A
SG
CYS
3
1_555
A
CD
103
D
CD
CD
1_555
A
CYS
12
A
SG
CYS
5
1_555
131.0
A
CYS
10
A
SG
CYS
3
1_555
A
CD
103
D
CD
CD
1_555
A
CYS
26
A
SG
CYS
19
1_555
106.4
A
CYS
12
A
SG
CYS
5
1_555
A
CD
103
D
CD
CD
1_555
A
CYS
26
A
SG
CYS
19
1_555
106.9
A
CYS
10
A
SG
CYS
3
1_555
A
CD
103
D
CD
CD
1_555
A
CYS
29
A
SG
CYS
22
1_555
105.4
A
CYS
12
A
SG
CYS
5
1_555
A
CD
103
D
CD
CD
1_555
A
CYS
29
A
SG
CYS
22
1_555
104.6
A
CYS
26
A
SG
CYS
19
1_555
A
CD
103
D
CD
CD
1_555
A
CYS
29
A
SG
CYS
22
1_555
97.7
A
CYS
12
A
SG
CYS
5
1_555
A
CD
101
B
CD
CD
1_555
A
CYS
18
A
SG
CYS
11
1_555
109.9
A
CYS
12
A
SG
CYS
5
1_555
A
CD
101
B
CD
CD
1_555
A
CYS
20
A
SG
CYS
13
1_555
97.6
A
CYS
18
A
SG
CYS
11
1_555
A
CD
101
B
CD
CD
1_555
A
CYS
20
A
SG
CYS
13
1_555
101.7
A
CYS
12
A
SG
CYS
5
1_555
A
CD
101
B
CD
CD
1_555
A
CYS
31
A
SG
CYS
24
1_555
105.4
A
CYS
18
A
SG
CYS
11
1_555
A
CD
101
B
CD
CD
1_555
A
CYS
31
A
SG
CYS
24
1_555
120.8
A
CYS
20
A
SG
CYS
13
1_555
A
CD
101
B
CD
CD
1_555
A
CYS
31
A
SG
CYS
24
1_555
119.1
A
CYS
20
A
SG
CYS
13
1_555
A
CD
102
C
CD
CD
1_555
A
CYS
24
A
SG
CYS
17
1_555
115.9
A
CYS
20
A
SG
CYS
13
1_555
A
CD
102
C
CD
CD
1_555
A
CYS
29
A
SG
CYS
22
1_555
100.0
A
CYS
24
A
SG
CYS
17
1_555
A
CD
102
C
CD
CD
1_555
A
CYS
29
A
SG
CYS
22
1_555
112.7
A
CYS
20
A
SG
CYS
13
1_555
A
CD
102
C
CD
CD
1_555
A
CYS
34
A
SG
CYS
27
1_555
110.2
A
CYS
24
A
SG
CYS
17
1_555
A
CD
102
C
CD
CD
1_555
A
CYS
34
A
SG
CYS
27
1_555
116.2
A
CYS
29
A
SG
CYS
22
1_555
A
CD
102
C
CD
CD
1_555
A
CYS
34
A
SG
CYS
27
1_555
99.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
8
A
A
O
H
SER
GLY
13
16
1.39
19
A
A
O
H
SER
GLY
13
16
1.45
1
A
LYS
14
-64.38
-73.74
1
A
ASN
19
-146.69
54.41
1
A
THR
25
-132.91
-41.75
1
A
SER
30
-170.45
45.74
1
A
CYS
34
-144.28
-48.34
2
A
LYS
14
72.01
-59.22
2
A
SER
15
-38.70
-34.68
2
A
ASN
19
-144.20
52.45
2
A
CYS
20
-88.12
33.17
2
A
ASN
28
-117.62
67.63
2
A
SER
30
-167.98
53.29
2
A
CYS
34
-130.45
-49.18
3
A
LYS
14
85.24
-54.98
3
A
SER
15
-38.14
-31.62
3
A
ASN
19
-146.19
52.95
3
A
SER
30
-175.15
68.75
3
A
CYS
31
-121.11
-73.27
3
A
LYS
32
-178.51
137.12
3
A
SER
33
81.09
9.31
4
A
CYS
12
-67.77
-71.20
4
A
THR
17
-178.92
138.15
4
A
ASN
19
-142.50
52.40
4
A
SER
23
-176.37
94.85
4
A
SER
30
-165.43
49.79
4
A
CYS
31
-89.62
-91.75
4
A
LYS
32
-178.99
139.59
5
A
CYS
12
-70.75
-72.47
5
A
THR
17
179.40
126.38
5
A
SER
30
-157.78
34.51
5
A
CYS
31
-78.10
-90.02
6
A
CYS
10
63.25
141.59
6
A
LYS
14
-73.43
-91.91
6
A
CYS
20
-107.53
42.60
6
A
SER
30
-176.69
-27.90
6
A
CYS
31
-35.90
134.54
6
A
CYS
34
-108.69
-63.43
7
A
CYS
18
-47.39
100.03
7
A
THR
25
-161.47
-41.68
7
A
SER
30
-175.04
34.22
7
A
CYS
31
-68.95
-98.79
7
A
LYS
32
166.33
-30.79
7
A
CYS
34
-133.89
-51.62
8
A
CYS
10
56.94
164.61
8
A
CYS
12
-91.05
-75.74
8
A
LYS
14
-29.03
-43.31
8
A
SER
15
-36.37
-31.90
8
A
THR
17
82.96
137.47
8
A
CYS
18
-41.08
154.28
8
A
ASN
19
-147.19
57.01
8
A
CYS
20
-87.12
31.78
8
A
ASN
28
56.07
73.60
8
A
SER
30
-176.05
63.53
8
A
CYS
34
-144.24
-48.69
9
A
GLU
11
-36.88
-31.90
9
A
LYS
14
-120.20
-70.77
9
A
THR
17
73.54
148.90
9
A
ASN
19
-146.66
54.60
9
A
CYS
20
-95.88
33.38
9
A
ASN
28
39.58
62.60
9
A
SER
30
-174.40
33.92
9
A
CYS
31
-75.64
-76.62
9
A
LYS
32
160.45
146.38
10
A
CYS
12
-74.70
-72.00
10
A
LYS
14
79.77
-48.73
10
A
THR
17
77.75
149.53
10
A
ASN
19
-154.47
59.03
10
A
CYS
20
-94.30
32.15
10
A
CYS
26
-52.71
171.54
10
A
SER
30
-172.73
60.45
10
A
CYS
31
-94.43
-94.88
10
A
LYS
32
-176.35
-37.70
11
A
GLU
11
-88.71
49.42
11
A
THR
25
-135.84
-41.21
11
A
CYS
26
-49.01
150.95
11
A
SER
30
-165.48
31.16
12
A
CYS
18
-63.45
91.21
12
A
SER
30
-164.25
37.55
12
A
CYS
31
-118.87
-150.44
12
A
LYS
32
-124.16
-158.80
12
A
SER
33
47.84
22.05
12
A
CYS
34
-157.17
-47.17
13
A
CYS
10
58.75
162.33
13
A
GLU
11
-94.79
59.43
13
A
LYS
14
71.39
-58.47
13
A
CYS
18
-47.68
108.46
13
A
SER
23
-61.24
94.38
13
A
ASN
28
46.49
70.23
13
A
SER
30
-165.96
58.03
13
A
CYS
34
-148.52
-47.99
14
A
CYS
10
65.65
152.30
14
A
GLU
11
-89.50
44.19
14
A
CYS
12
-69.58
-77.05
14
A
LYS
14
79.37
-55.67
14
A
ASN
19
-142.40
53.31
14
A
CYS
20
-85.63
31.37
14
A
LYS
32
-104.02
-153.66
14
A
SER
33
57.19
15.58
14
A
CYS
34
-161.88
-52.80
15
A
THR
17
60.47
143.70
15
A
CYS
20
-87.40
31.84
15
A
SER
23
-163.45
87.79
15
A
ASN
28
33.40
54.73
15
A
SER
30
-176.52
34.65
15
A
LYS
32
171.08
140.70
15
A
CYS
34
-130.52
-55.67
16
A
SER
13
164.50
-30.43
16
A
LYS
14
72.14
-57.61
16
A
ASN
28
-88.66
47.27
16
A
SER
30
-174.13
53.95
16
A
CYS
31
-103.22
-73.31
16
A
LYS
32
-179.23
137.29
17
A
GLU
11
-67.66
76.37
17
A
CYS
12
-73.17
-71.39
17
A
LYS
14
84.41
-55.17
17
A
ASN
19
-152.93
59.60
17
A
SER
23
67.86
162.22
17
A
ASN
28
39.06
31.89
17
A
SER
30
-169.72
63.22
17
A
CYS
31
-105.28
-87.37
17
A
LYS
32
-176.20
139.89
17
A
CYS
34
-130.50
-48.63
18
A
CYS
10
83.19
143.40
18
A
LYS
14
-66.17
-74.16
18
A
CYS
18
-50.60
103.86
18
A
SER
23
-58.33
86.37
18
A
THR
25
-136.96
-42.33
18
A
CYS
26
-49.75
165.54
18
A
ASN
28
43.59
76.54
18
A
SER
30
-145.83
17.42
18
A
CYS
34
-142.81
-48.07
19
A
CYS
12
-92.13
-81.15
19
A
SER
15
-38.04
-30.55
19
A
THR
17
66.47
117.12
19
A
CYS
18
-40.05
157.61
19
A
ASN
19
-149.23
58.83
19
A
CYS
20
-84.93
31.27
19
A
SER
30
-174.83
79.24
19
A
CYS
34
-144.78
-46.46
20
A
LYS
14
-58.18
-89.68
20
A
SER
23
-163.29
106.66
20
A
SER
30
-165.21
29.15
20
A
CYS
34
-140.49
-49.09
solution structure of the beta domain of mt_nc
1
N
N
2
N
N
2
N
N
2
N
N
A
CYS
10
A
CYS
3
HELX_P
A
GLY
16
A
GLY
9
1
1
7
metalc
2.299
A
CYS
10
A
SG
CYS
3
1_555
A
CD
103
D
CD
CD
1_555
metalc
2.599
A
CYS
12
A
SG
CYS
5
1_555
A
CD
101
B
CD
CD
1_555
metalc
2.321
A
CYS
12
A
SG
CYS
5
1_555
A
CD
103
D
CD
CD
1_555
metalc
2.536
A
CYS
18
A
SG
CYS
11
1_555
A
CD
101
B
CD
CD
1_555
metalc
2.579
A
CYS
20
A
SG
CYS
13
1_555
A
CD
101
B
CD
CD
1_555
metalc
2.600
A
CYS
20
A
SG
CYS
13
1_555
A
CD
102
C
CD
CD
1_555
metalc
2.293
A
CYS
24
A
SG
CYS
17
1_555
A
CD
102
C
CD
CD
1_555
metalc
2.567
A
CYS
26
A
SG
CYS
19
1_555
A
CD
103
D
CD
CD
1_555
metalc
2.598
A
CYS
29
A
SG
CYS
22
1_555
A
CD
102
C
CD
CD
1_555
metalc
2.599
A
CYS
29
A
SG
CYS
22
1_555
A
CD
103
D
CD
CD
1_555
metalc
2.297
A
CYS
31
A
SG
CYS
24
1_555
A
CD
101
B
CD
CD
1_555
metalc
2.524
A
CYS
34
A
SG
CYS
27
1_555
A
CD
102
C
CD
CD
1_555
METAL BINDING PROTEIN
cadmium thiolate-cluster, METAL BINDING PROTEIN
MTA_NOTCO
UNP
1
2
P62339
DPCECSKSGTCNCGGSCTCTNCSCKSCK
2
29
1M0J
8
35
P62339
A
1
1
28
BINDING SITE FOR RESIDUE CD A 101
A
CD
101
Software
4
BINDING SITE FOR RESIDUE CD A 102
A
CD
102
Software
4
BINDING SITE FOR RESIDUE CD A 103
A
CD
103
Software
4
A
CYS
12
A
CYS
5
4
1_555
A
CYS
18
A
CYS
11
4
1_555
A
CYS
20
A
CYS
13
4
1_555
A
CYS
31
A
CYS
24
4
1_555
A
CYS
20
A
CYS
13
4
1_555
A
CYS
24
A
CYS
17
4
1_555
A
CYS
29
A
CYS
22
4
1_555
A
CYS
34
A
CYS
27
4
1_555
A
CYS
10
A
CYS
3
4
1_555
A
CYS
12
A
CYS
5
4
1_555
A
CYS
26
A
CYS
19
4
1_555
A
CYS
29
A
CYS
22
4
1_555