0.016410 0.009474 0.000000 0.000000 0.018948 0.000000 0.000000 0.000000 0.009046 0.000000 0.000000 0.000000 Lanyi, J.K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 60.940 60.940 110.550 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C42 H86 O3 639.130 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL LIPID FRAGMENT non-polymer C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C20 H28 O 284.436 RETINAL non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking C27 H56 380.734 2,10,23-TRIMETHYL-TETRACOSANE LIPID FRAGMENT non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 321 715 726 10.1016/S0022-2836(02)00681-2 12206785 Crystallographic structure of the K intermediate of bacteriorhodopsin: conservation of free energy after photoisomerization of the retinal. 2002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 100.0 1 CCD 2001-08-20 ADSC QUANTUM SINGLE WAVELENGTH M x-ray 1 0.979 1.0 5.0.2 ALS 0.979 0.979 SYNCHROTRON ALS BEAMLINE 5.0.2 28270.084 BACTERIORHODOPSIN 1 man polymer 639.130 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL 13 syn non-polymer 380.734 2,10,23-TRIMETHYL-TETRACOSANE 1 syn non-polymer 284.436 RETINAL 1 syn non-polymer 18.015 water 23 nat water BR no no MLELLPTAVEGVSQAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLT MVPFGGEQNPIYWARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLY ILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSR AIFGEAEAPEPSAGDGAAATSD MLELLPTAVEGVSQAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLT MVPFGGEQNPIYWARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLY ILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSR AIFGEAEAPEPSAGDGAAATSD A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Halobacterium Halobacterium sample 2242 Halobacterium salinarum 2242 Halobacterium salinarum plasmid prn2367 1 1.81 41.29 CUBIC LIPID PHASE 5.60 CUBIC LIPID PHASE WITH MONO-OLEIN, PRECIPITANT PHOSPHATE, pH 5.60, temperature 295K 295 repository Initial release Version format compliance Derived calculations Version format compliance 1 0 2002-09-11 1 1 2008-04-28 1 2 2011-07-13 K INTERMEDIATE RCSB Y RCSB 2002-06-13 REL LI1 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL SQU 2,10,23-TRIMETHYL-TETRACOSANE RET RETINAL HOH water LI1 601 2 LI1 LI1 601 A LI1 602 2 LI1 LI1 602 A LI1 603 2 LI1 LI1 603 A LI1 604 2 LI1 LI1 604 A LI1 605 2 LI1 LI1 605 A LI1 606 2 LI1 LI1 606 A LI1 607 2 LI1 LI1 607 A LI1 608 2 LI1 LI1 608 A LI1 609 2 LI1 LI1 609 A LI1 610 2 LI1 LI1 610 A LI1 611 2 LI1 LI1 611 A LI1 612 2 LI1 LI1 612 A LI1 613 2 LI1 LI1 613 A SQU 701 3 SQU SQU 701 A RET 301 4 RET RET 301 A HOH 401 5 HOH HOH 401 A HOH 402 5 HOH HOH 402 A HOH 403 5 HOH HOH 403 A HOH 404 5 HOH HOH 404 A HOH 405 5 HOH HOH 405 A HOH 406 5 HOH HOH 406 A HOH 407 5 HOH HOH 407 A HOH 411 5 HOH HOH 411 A HOH 412 5 HOH HOH 412 A HOH 413 5 HOH HOH 413 A HOH 414 5 HOH HOH 414 A HOH 415 5 HOH HOH 415 A HOH 416 5 HOH HOH 416 A HOH 417 5 HOH HOH 417 A HOH 418 5 HOH HOH 418 A HOH 419 5 HOH HOH 419 A HOH 420 5 HOH HOH 420 A HOH 501 5 HOH HOH 501 A HOH 502 5 HOH HOH 502 A HOH 511 5 HOH HOH 511 A HOH 512 5 HOH HOH 512 A HOH 513 5 HOH HOH 513 A HOH 514 5 HOH HOH 514 A n 1 -12 A n 2 -11 A n 3 -10 A n 4 -9 A n 5 -8 A n 6 -7 A n 7 -6 A n 8 -5 A n 9 -4 A n 10 -3 A n 11 -2 A n 12 -1 A n 13 0 A n 14 1 A n 15 2 A n 16 3 A n 17 4 A THR 5 n 18 THR 5 A GLY 6 n 19 GLY 6 A ARG 7 n 20 ARG 7 A PRO 8 n 21 PRO 8 A GLU 9 n 22 GLU 9 A TRP 10 n 23 TRP 10 A ILE 11 n 24 ILE 11 A TRP 12 n 25 TRP 12 A LEU 13 n 26 LEU 13 A ALA 14 n 27 ALA 14 A LEU 15 n 28 LEU 15 A GLY 16 n 29 GLY 16 A THR 17 n 30 THR 17 A ALA 18 n 31 ALA 18 A LEU 19 n 32 LEU 19 A MET 20 n 33 MET 20 A GLY 21 n 34 GLY 21 A LEU 22 n 35 LEU 22 A GLY 23 n 36 GLY 23 A THR 24 n 37 THR 24 A LEU 25 n 38 LEU 25 A TYR 26 n 39 TYR 26 A PHE 27 n 40 PHE 27 A LEU 28 n 41 LEU 28 A VAL 29 n 42 VAL 29 A LYS 30 n 43 LYS 30 A GLY 31 n 44 GLY 31 A MET 32 n 45 MET 32 A GLY 33 n 46 GLY 33 A VAL 34 n 47 VAL 34 A SER 35 n 48 SER 35 A ASP 36 n 49 ASP 36 A PRO 37 n 50 PRO 37 A ASP 38 n 51 ASP 38 A ALA 39 n 52 ALA 39 A LYS 40 n 53 LYS 40 A LYS 41 n 54 LYS 41 A PHE 42 n 55 PHE 42 A TYR 43 n 56 TYR 43 A ALA 44 n 57 ALA 44 A ILE 45 n 58 ILE 45 A THR 46 n 59 THR 46 A THR 47 n 60 THR 47 A LEU 48 n 61 LEU 48 A VAL 49 n 62 VAL 49 A PRO 50 n 63 PRO 50 A ALA 51 n 64 ALA 51 A ILE 52 n 65 ILE 52 A ALA 53 n 66 ALA 53 A PHE 54 n 67 PHE 54 A THR 55 n 68 THR 55 A MET 56 n 69 MET 56 A TYR 57 n 70 TYR 57 A LEU 58 n 71 LEU 58 A SER 59 n 72 SER 59 A MET 60 n 73 MET 60 A LEU 61 n 74 LEU 61 A LEU 62 n 75 LEU 62 A GLY 63 n 76 GLY 63 A TYR 64 n 77 TYR 64 A GLY 65 n 78 GLY 65 A LEU 66 n 79 LEU 66 A THR 67 n 80 THR 67 A MET 68 n 81 MET 68 A VAL 69 n 82 VAL 69 A PRO 70 n 83 PRO 70 A PHE 71 n 84 PHE 71 A GLY 72 n 85 GLY 72 A GLY 73 n 86 GLY 73 A GLU 74 n 87 GLU 74 A GLN 75 n 88 GLN 75 A ASN 76 n 89 ASN 76 A PRO 77 n 90 PRO 77 A ILE 78 n 91 ILE 78 A TYR 79 n 92 TYR 79 A TRP 80 n 93 TRP 80 A ALA 81 n 94 ALA 81 A ARG 82 n 95 ARG 82 A TYR 83 n 96 TYR 83 A ALA 84 n 97 ALA 84 A ASP 85 n 98 ASP 85 A TRP 86 n 99 TRP 86 A LEU 87 n 100 LEU 87 A PHE 88 n 101 PHE 88 A THR 89 n 102 THR 89 A THR 90 n 103 THR 90 A PRO 91 n 104 PRO 91 A LEU 92 n 105 LEU 92 A LEU 93 n 106 LEU 93 A LEU 94 n 107 LEU 94 A LEU 95 n 108 LEU 95 A ASP 96 n 109 ASP 96 A LEU 97 n 110 LEU 97 A ALA 98 n 111 ALA 98 A LEU 99 n 112 LEU 99 A LEU 100 n 113 LEU 100 A VAL 101 n 114 VAL 101 A ASP 102 n 115 ASP 102 A ALA 103 n 116 ALA 103 A ASP 104 n 117 ASP 104 A GLN 105 n 118 GLN 105 A GLY 106 n 119 GLY 106 A THR 107 n 120 THR 107 A ILE 108 n 121 ILE 108 A LEU 109 n 122 LEU 109 A ALA 110 n 123 ALA 110 A LEU 111 n 124 LEU 111 A VAL 112 n 125 VAL 112 A GLY 113 n 126 GLY 113 A ALA 114 n 127 ALA 114 A ASP 115 n 128 ASP 115 A GLY 116 n 129 GLY 116 A ILE 117 n 130 ILE 117 A MET 118 n 131 MET 118 A ILE 119 n 132 ILE 119 A GLY 120 n 133 GLY 120 A THR 121 n 134 THR 121 A GLY 122 n 135 GLY 122 A LEU 123 n 136 LEU 123 A VAL 124 n 137 VAL 124 A GLY 125 n 138 GLY 125 A ALA 126 n 139 ALA 126 A LEU 127 n 140 LEU 127 A THR 128 n 141 THR 128 A LYS 129 n 142 LYS 129 A VAL 130 n 143 VAL 130 A TYR 131 n 144 TYR 131 A SER 132 n 145 SER 132 A TYR 133 n 146 TYR 133 A ARG 134 n 147 ARG 134 A PHE 135 n 148 PHE 135 A VAL 136 n 149 VAL 136 A TRP 137 n 150 TRP 137 A TRP 138 n 151 TRP 138 A ALA 139 n 152 ALA 139 A ILE 140 n 153 ILE 140 A SER 141 n 154 SER 141 A THR 142 n 155 THR 142 A ALA 143 n 156 ALA 143 A ALA 144 n 157 ALA 144 A MET 145 n 158 MET 145 A LEU 146 n 159 LEU 146 A TYR 147 n 160 TYR 147 A ILE 148 n 161 ILE 148 A LEU 149 n 162 LEU 149 A TYR 150 n 163 TYR 150 A VAL 151 n 164 VAL 151 A LEU 152 n 165 LEU 152 A PHE 153 n 166 PHE 153 A PHE 154 n 167 PHE 154 A GLY 155 n 168 GLY 155 A PHE 156 n 169 PHE 156 A n 170 157 A n 171 158 A n 172 159 A n 173 160 A n 174 161 A SER 162 n 175 SER 162 A MET 163 n 176 MET 163 A ARG 164 n 177 ARG 164 A PRO 165 n 178 PRO 165 A GLU 166 n 179 GLU 166 A VAL 167 n 180 VAL 167 A ALA 168 n 181 ALA 168 A SER 169 n 182 SER 169 A THR 170 n 183 THR 170 A PHE 171 n 184 PHE 171 A LYS 172 n 185 LYS 172 A VAL 173 n 186 VAL 173 A LEU 174 n 187 LEU 174 A ARG 175 n 188 ARG 175 A ASN 176 n 189 ASN 176 A VAL 177 n 190 VAL 177 A THR 178 n 191 THR 178 A VAL 179 n 192 VAL 179 A VAL 180 n 193 VAL 180 A LEU 181 n 194 LEU 181 A TRP 182 n 195 TRP 182 A SER 183 n 196 SER 183 A ALA 184 n 197 ALA 184 A TYR 185 n 198 TYR 185 A PRO 186 n 199 PRO 186 A VAL 187 n 200 VAL 187 A VAL 188 n 201 VAL 188 A TRP 189 n 202 TRP 189 A LEU 190 n 203 LEU 190 A ILE 191 n 204 ILE 191 A GLY 192 n 205 GLY 192 A SER 193 n 206 SER 193 A GLU 194 n 207 GLU 194 A GLY 195 n 208 GLY 195 A ALA 196 n 209 ALA 196 A GLY 197 n 210 GLY 197 A ILE 198 n 211 ILE 198 A VAL 199 n 212 VAL 199 A PRO 200 n 213 PRO 200 A LEU 201 n 214 LEU 201 A ASN 202 n 215 ASN 202 A ILE 203 n 216 ILE 203 A GLU 204 n 217 GLU 204 A THR 205 n 218 THR 205 A LEU 206 n 219 LEU 206 A LEU 207 n 220 LEU 207 A PHE 208 n 221 PHE 208 A MET 209 n 222 MET 209 A VAL 210 n 223 VAL 210 A LEU 211 n 224 LEU 211 A ASP 212 n 225 ASP 212 A VAL 213 n 226 VAL 213 A SER 214 n 227 SER 214 A ALA 215 n 228 ALA 215 A LYS 216 n 229 LYS 216 A VAL 217 n 230 VAL 217 A GLY 218 n 231 GLY 218 A PHE 219 n 232 PHE 219 A GLY 220 n 233 GLY 220 A LEU 221 n 234 LEU 221 A ILE 222 n 235 ILE 222 A LEU 223 n 236 LEU 223 A LEU 224 n 237 LEU 224 A ARG 225 n 238 ARG 225 A SER 226 n 239 SER 226 A ARG 227 n 240 ARG 227 A ALA 228 n 241 ALA 228 A ILE 229 n 242 ILE 229 A PHE 230 n 243 PHE 230 A GLY 231 n 244 GLY 231 A n 245 232 A n 246 233 A n 247 234 A n 248 235 A n 249 236 A n 250 237 A n 251 238 A n 252 239 A n 253 240 A n 254 241 A n 255 242 A n 256 243 A n 257 244 A n 258 245 A n 259 246 A n 260 247 A n 261 248 A n 262 249 A 0.1362000 0.1488000 0.1654000 0.1792000 1771 2061 4.9 4.9 36468 author_and_software_defined_assembly PISA,PQS 3 trimeric 26800 -232 28350 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_665 -y+1,x-y+1,z crystal symmetry operation 30.4700000000 52.7755881066 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_565 -x+y,-x+1,z crystal symmetry operation -30.4700000000 52.7755881066 0.0000000000 A N THR 67 A N THR 80 A O ILE 78 A O ILE 91 1 A C44 LI1 601 B C44 LI1 1 1 N 1 A C49 LI1 601 B C49 LI1 1 1 N 1 A C51 LI1 601 B C51 LI1 1 1 N 1 A C52 LI1 601 B C52 LI1 1 1 N 1 A C53 LI1 601 B C53 LI1 1 1 N 1 A C55 LI1 601 B C55 LI1 1 1 N 1 A C56 LI1 601 B C56 LI1 1 1 N 1 A C57 LI1 601 B C57 LI1 1 1 N 1 A C58 LI1 601 B C58 LI1 1 1 N 1 A C59 LI1 601 B C59 LI1 1 1 N 1 A C60 LI1 601 B C60 LI1 1 1 N 1 A C14 LI1 601 B C14 LI1 1 1 N 1 A C24 LI1 601 B C24 LI1 1 1 N 1 A C19 LI1 602 C C19 LI1 1 1 N 1 A C28 LI1 602 C C28 LI1 1 1 N 1 A C29 LI1 602 C C29 LI1 1 1 N 1 A C30 LI1 602 C C30 LI1 1 1 N 1 A C1 LI1 603 D C1 LI1 1 1 N 1 A C2 LI1 603 D C2 LI1 1 1 N 1 A C3 LI1 603 D C3 LI1 1 1 N 1 A O1 LI1 603 D O1 LI1 1 1 N 1 A O2 LI1 603 D O2 LI1 1 1 N 1 A O3 LI1 603 D O3 LI1 1 1 N 1 A C41 LI1 603 D C41 LI1 1 1 N 1 A C42 LI1 603 D C42 LI1 1 1 N 1 A C43 LI1 603 D C43 LI1 1 1 N 1 A C44 LI1 603 D C44 LI1 1 1 N 1 A C45 LI1 603 D C45 LI1 1 1 N 1 A C46 LI1 603 D C46 LI1 1 1 N 1 A C47 LI1 603 D C47 LI1 1 1 N 1 A C48 LI1 603 D C48 LI1 1 1 N 1 A C49 LI1 603 D C49 LI1 1 1 N 1 A C50 LI1 603 D C50 LI1 1 1 N 1 A C51 LI1 603 D C51 LI1 1 1 N 1 A C52 LI1 603 D C52 LI1 1 1 N 1 A C53 LI1 603 D C53 LI1 1 1 N 1 A C55 LI1 603 D C55 LI1 1 1 N 1 A C56 LI1 603 D C56 LI1 1 1 N 1 A C57 LI1 603 D C57 LI1 1 1 N 1 A C58 LI1 603 D C58 LI1 1 1 N 1 A C59 LI1 603 D C59 LI1 1 1 N 1 A C60 LI1 603 D C60 LI1 1 1 N 1 A C19 LI1 603 D C19 LI1 1 1 N 1 A C24 LI1 603 D C24 LI1 1 1 N 1 A C1 LI1 604 E C1 LI1 1 1 N 1 A C2 LI1 604 E C2 LI1 1 1 N 1 A C3 LI1 604 E C3 LI1 1 1 N 1 A O1 LI1 604 E O1 LI1 1 1 N 1 A O2 LI1 604 E O2 LI1 1 1 N 1 A O3 LI1 604 E O3 LI1 1 1 N 1 A C41 LI1 604 E C41 LI1 1 1 N 1 A C42 LI1 604 E C42 LI1 1 1 N 1 A C43 LI1 604 E C43 LI1 1 1 N 1 A C44 LI1 604 E C44 LI1 1 1 N 1 A C45 LI1 604 E C45 LI1 1 1 N 1 A C46 LI1 604 E C46 LI1 1 1 N 1 A C47 LI1 604 E C47 LI1 1 1 N 1 A C48 LI1 604 E C48 LI1 1 1 N 1 A C49 LI1 604 E C49 LI1 1 1 N 1 A C50 LI1 604 E C50 LI1 1 1 N 1 A C51 LI1 604 E C51 LI1 1 1 N 1 A C52 LI1 604 E C52 LI1 1 1 N 1 A C53 LI1 604 E C53 LI1 1 1 N 1 A C55 LI1 604 E C55 LI1 1 1 N 1 A C56 LI1 604 E C56 LI1 1 1 N 1 A C57 LI1 604 E C57 LI1 1 1 N 1 A C58 LI1 604 E C58 LI1 1 1 N 1 A C59 LI1 604 E C59 LI1 1 1 N 1 A C60 LI1 604 E C60 LI1 1 1 N 1 A C14 LI1 604 E C14 LI1 1 1 N 1 A C19 LI1 604 E C19 LI1 1 1 N 1 A C24 LI1 604 E C24 LI1 1 1 N 1 A C30 LI1 604 E C30 LI1 1 1 N 1 A C1 LI1 605 F C1 LI1 1 1 N 1 A C2 LI1 605 F C2 LI1 1 1 N 1 A C3 LI1 605 F C3 LI1 1 1 N 1 A O1 LI1 605 F O1 LI1 1 1 N 1 A O2 LI1 605 F O2 LI1 1 1 N 1 A O3 LI1 605 F O3 LI1 1 1 N 1 A C41 LI1 605 F C41 LI1 1 1 N 1 A C42 LI1 605 F C42 LI1 1 1 N 1 A C43 LI1 605 F C43 LI1 1 1 N 1 A C44 LI1 605 F C44 LI1 1 1 N 1 A C45 LI1 605 F C45 LI1 1 1 N 1 A C46 LI1 605 F C46 LI1 1 1 N 1 A C47 LI1 605 F C47 LI1 1 1 N 1 A C48 LI1 605 F C48 LI1 1 1 N 1 A C49 LI1 605 F C49 LI1 1 1 N 1 A C50 LI1 605 F C50 LI1 1 1 N 1 A C51 LI1 605 F C51 LI1 1 1 N 1 A C52 LI1 605 F C52 LI1 1 1 N 1 A C53 LI1 605 F C53 LI1 1 1 N 1 A C55 LI1 605 F C55 LI1 1 1 N 1 A C56 LI1 605 F C56 LI1 1 1 N 1 A C57 LI1 605 F C57 LI1 1 1 N 1 A C58 LI1 605 F C58 LI1 1 1 N 1 A C59 LI1 605 F C59 LI1 1 1 N 1 A C60 LI1 605 F C60 LI1 1 1 N 1 A C11 LI1 605 F C11 LI1 1 1 N 1 A C12 LI1 605 F C12 LI1 1 1 N 1 A C14 LI1 605 F C14 LI1 1 1 N 1 A C19 LI1 605 F C19 LI1 1 1 N 1 A C23 LI1 605 F C23 LI1 1 1 N 1 A C24 LI1 605 F C24 LI1 1 1 N 1 A C25 LI1 605 F C25 LI1 1 1 N 1 A C26 LI1 605 F C26 LI1 1 1 N 1 A C27 LI1 605 F C27 LI1 1 1 N 1 A C28 LI1 605 F C28 LI1 1 1 N 1 A C29 LI1 605 F C29 LI1 1 1 N 1 A C30 LI1 605 F C30 LI1 1 1 N 1 A C1 LI1 606 G C1 LI1 1 1 N 1 A C2 LI1 606 G C2 LI1 1 1 N 1 A C3 LI1 606 G C3 LI1 1 1 N 1 A O1 LI1 606 G O1 LI1 1 1 N 1 A O2 LI1 606 G O2 LI1 1 1 N 1 A O3 LI1 606 G O3 LI1 1 1 N 1 A C41 LI1 606 G C41 LI1 1 1 N 1 A C42 LI1 606 G C42 LI1 1 1 N 1 A C43 LI1 606 G C43 LI1 1 1 N 1 A C44 LI1 606 G C44 LI1 1 1 N 1 A C45 LI1 606 G C45 LI1 1 1 N 1 A C46 LI1 606 G C46 LI1 1 1 N 1 A C47 LI1 606 G C47 LI1 1 1 N 1 A C48 LI1 606 G C48 LI1 1 1 N 1 A C49 LI1 606 G C49 LI1 1 1 N 1 A C50 LI1 606 G C50 LI1 1 1 N 1 A C51 LI1 606 G C51 LI1 1 1 N 1 A C52 LI1 606 G C52 LI1 1 1 N 1 A C53 LI1 606 G C53 LI1 1 1 N 1 A C55 LI1 606 G C55 LI1 1 1 N 1 A C56 LI1 606 G C56 LI1 1 1 N 1 A C57 LI1 606 G C57 LI1 1 1 N 1 A C58 LI1 606 G C58 LI1 1 1 N 1 A C59 LI1 606 G C59 LI1 1 1 N 1 A C60 LI1 606 G C60 LI1 1 1 N 1 A C11 LI1 606 G C11 LI1 1 1 N 1 A C12 LI1 606 G C12 LI1 1 1 N 1 A C14 LI1 606 G C14 LI1 1 1 N 1 A C19 LI1 606 G C19 LI1 1 1 N 1 A C23 LI1 606 G C23 LI1 1 1 N 1 A C24 LI1 606 G C24 LI1 1 1 N 1 A C25 LI1 606 G C25 LI1 1 1 N 1 A C26 LI1 606 G C26 LI1 1 1 N 1 A C27 LI1 606 G C27 LI1 1 1 N 1 A C28 LI1 606 G C28 LI1 1 1 N 1 A C29 LI1 606 G C29 LI1 1 1 N 1 A C30 LI1 606 G C30 LI1 1 1 N 1 A C49 LI1 607 H C49 LI1 1 1 N 1 A C59 LI1 607 H C59 LI1 1 1 N 1 A C14 LI1 607 H C14 LI1 1 1 N 1 A C19 LI1 607 H C19 LI1 1 1 N 1 A C24 LI1 607 H C24 LI1 1 1 N 1 A C29 LI1 607 H C29 LI1 1 1 N 1 A C30 LI1 607 H C30 LI1 1 1 N 1 A C1 LI1 608 I C1 LI1 1 1 N 1 A C2 LI1 608 I C2 LI1 1 1 N 1 A C3 LI1 608 I C3 LI1 1 1 N 1 A O1 LI1 608 I O1 LI1 1 1 N 1 A O2 LI1 608 I O2 LI1 1 1 N 1 A O3 LI1 608 I O3 LI1 1 1 N 1 A C41 LI1 608 I C41 LI1 1 1 N 1 A C42 LI1 608 I C42 LI1 1 1 N 1 A C43 LI1 608 I C43 LI1 1 1 N 1 A C44 LI1 608 I C44 LI1 1 1 N 1 A C45 LI1 608 I C45 LI1 1 1 N 1 A C46 LI1 608 I C46 LI1 1 1 N 1 A C47 LI1 608 I C47 LI1 1 1 N 1 A C48 LI1 608 I C48 LI1 1 1 N 1 A C49 LI1 608 I C49 LI1 1 1 N 1 A C50 LI1 608 I C50 LI1 1 1 N 1 A C51 LI1 608 I C51 LI1 1 1 N 1 A C52 LI1 608 I C52 LI1 1 1 N 1 A C53 LI1 608 I C53 LI1 1 1 N 1 A C55 LI1 608 I C55 LI1 1 1 N 1 A C56 LI1 608 I C56 LI1 1 1 N 1 A C57 LI1 608 I C57 LI1 1 1 N 1 A C58 LI1 608 I C58 LI1 1 1 N 1 A C59 LI1 608 I C59 LI1 1 1 N 1 A C60 LI1 608 I C60 LI1 1 1 N 1 A C14 LI1 608 I C14 LI1 1 1 N 1 A C24 LI1 608 I C24 LI1 1 1 N 1 A C1 LI1 609 J C1 LI1 1 1 N 1 A C2 LI1 609 J C2 LI1 1 1 N 1 A C3 LI1 609 J C3 LI1 1 1 N 1 A O1 LI1 609 J O1 LI1 1 1 N 1 A O2 LI1 609 J O2 LI1 1 1 N 1 A O3 LI1 609 J O3 LI1 1 1 N 1 A C41 LI1 609 J C41 LI1 1 1 N 1 A C42 LI1 609 J C42 LI1 1 1 N 1 A C43 LI1 609 J C43 LI1 1 1 N 1 A C44 LI1 609 J C44 LI1 1 1 N 1 A C45 LI1 609 J C45 LI1 1 1 N 1 A C46 LI1 609 J C46 LI1 1 1 N 1 A C47 LI1 609 J C47 LI1 1 1 N 1 A C48 LI1 609 J C48 LI1 1 1 N 1 A C49 LI1 609 J C49 LI1 1 1 N 1 A C50 LI1 609 J C50 LI1 1 1 N 1 A C51 LI1 609 J C51 LI1 1 1 N 1 A C52 LI1 609 J C52 LI1 1 1 N 1 A C53 LI1 609 J C53 LI1 1 1 N 1 A C55 LI1 609 J C55 LI1 1 1 N 1 A C56 LI1 609 J C56 LI1 1 1 N 1 A C57 LI1 609 J C57 LI1 1 1 N 1 A C58 LI1 609 J C58 LI1 1 1 N 1 A C59 LI1 609 J C59 LI1 1 1 N 1 A C60 LI1 609 J C60 LI1 1 1 N 1 A C14 LI1 609 J C14 LI1 1 1 N 1 A C19 LI1 609 J C19 LI1 1 1 N 1 A C24 LI1 609 J C24 LI1 1 1 N 1 A C29 LI1 609 J C29 LI1 1 1 N 1 A C44 LI1 610 K C44 LI1 1 1 N 1 A C49 LI1 610 K C49 LI1 1 1 N 1 A C14 LI1 610 K C14 LI1 1 1 N 1 A C19 LI1 610 K C19 LI1 1 1 N 1 A C24 LI1 610 K C24 LI1 1 1 N 1 A C1 LI1 611 L C1 LI1 1 1 N 1 A C2 LI1 611 L C2 LI1 1 1 N 1 A C3 LI1 611 L C3 LI1 1 1 N 1 A O1 LI1 611 L O1 LI1 1 1 N 1 A O2 LI1 611 L O2 LI1 1 1 N 1 A O3 LI1 611 L O3 LI1 1 1 N 1 A C41 LI1 611 L C41 LI1 1 1 N 1 A C42 LI1 611 L C42 LI1 1 1 N 1 A C43 LI1 611 L C43 LI1 1 1 N 1 A C44 LI1 611 L C44 LI1 1 1 N 1 A C45 LI1 611 L C45 LI1 1 1 N 1 A C46 LI1 611 L C46 LI1 1 1 N 1 A C47 LI1 611 L C47 LI1 1 1 N 1 A C48 LI1 611 L C48 LI1 1 1 N 1 A C49 LI1 611 L C49 LI1 1 1 N 1 A C50 LI1 611 L C50 LI1 1 1 N 1 A C51 LI1 611 L C51 LI1 1 1 N 1 A C52 LI1 611 L C52 LI1 1 1 N 1 A C53 LI1 611 L C53 LI1 1 1 N 1 A C55 LI1 611 L C55 LI1 1 1 N 1 A C56 LI1 611 L C56 LI1 1 1 N 1 A C57 LI1 611 L C57 LI1 1 1 N 1 A C58 LI1 611 L C58 LI1 1 1 N 1 A C59 LI1 611 L C59 LI1 1 1 N 1 A C60 LI1 611 L C60 LI1 1 1 N 1 A C28 LI1 611 L C28 LI1 1 1 N 1 A C29 LI1 611 L C29 LI1 1 1 N 1 A C30 LI1 611 L C30 LI1 1 1 N 1 A C1 LI1 612 M C1 LI1 1 1 N 1 A C2 LI1 612 M C2 LI1 1 1 N 1 A C3 LI1 612 M C3 LI1 1 1 N 1 A O1 LI1 612 M O1 LI1 1 1 N 1 A O2 LI1 612 M O2 LI1 1 1 N 1 A O3 LI1 612 M O3 LI1 1 1 N 1 A C41 LI1 612 M C41 LI1 1 1 N 1 A C42 LI1 612 M C42 LI1 1 1 N 1 A C43 LI1 612 M C43 LI1 1 1 N 1 A C44 LI1 612 M C44 LI1 1 1 N 1 A C45 LI1 612 M C45 LI1 1 1 N 1 A C46 LI1 612 M C46 LI1 1 1 N 1 A C47 LI1 612 M C47 LI1 1 1 N 1 A C48 LI1 612 M C48 LI1 1 1 N 1 A C49 LI1 612 M C49 LI1 1 1 N 1 A C50 LI1 612 M C50 LI1 1 1 N 1 A C51 LI1 612 M C51 LI1 1 1 N 1 A C52 LI1 612 M C52 LI1 1 1 N 1 A C53 LI1 612 M C53 LI1 1 1 N 1 A C55 LI1 612 M C55 LI1 1 1 N 1 A C56 LI1 612 M C56 LI1 1 1 N 1 A C57 LI1 612 M C57 LI1 1 1 N 1 A C58 LI1 612 M C58 LI1 1 1 N 1 A C59 LI1 612 M C59 LI1 1 1 N 1 A C60 LI1 612 M C60 LI1 1 1 N 1 A C19 LI1 612 M C19 LI1 1 1 N 1 A C24 LI1 612 M C24 LI1 1 1 N 1 A C1 LI1 613 N C1 LI1 1 1 N 1 A C2 LI1 613 N C2 LI1 1 1 N 1 A C3 LI1 613 N C3 LI1 1 1 N 1 A O1 LI1 613 N O1 LI1 1 1 N 1 A O2 LI1 613 N O2 LI1 1 1 N 1 A O3 LI1 613 N O3 LI1 1 1 N 1 A C41 LI1 613 N C41 LI1 1 1 N 1 A C42 LI1 613 N C42 LI1 1 1 N 1 A C43 LI1 613 N C43 LI1 1 1 N 1 A C44 LI1 613 N C44 LI1 1 1 N 1 A C45 LI1 613 N C45 LI1 1 1 N 1 A C46 LI1 613 N C46 LI1 1 1 N 1 A C47 LI1 613 N C47 LI1 1 1 N 1 A C48 LI1 613 N C48 LI1 1 1 N 1 A C49 LI1 613 N C49 LI1 1 1 N 1 A C50 LI1 613 N C50 LI1 1 1 N 1 A C51 LI1 613 N C51 LI1 1 1 N 1 A C52 LI1 613 N C52 LI1 1 1 N 1 A C53 LI1 613 N C53 LI1 1 1 N 1 A C55 LI1 613 N C55 LI1 1 1 N 1 A C56 LI1 613 N C56 LI1 1 1 N 1 A C57 LI1 613 N C57 LI1 1 1 N 1 A C58 LI1 613 N C58 LI1 1 1 N 1 A C59 LI1 613 N C59 LI1 1 1 N 1 A C60 LI1 613 N C60 LI1 1 1 N 1 A C14 LI1 613 N C14 LI1 1 1 N 1 A C25 LI1 613 N C25 LI1 1 1 N 1 A C26 LI1 613 N C26 LI1 1 1 N 1 A C27 LI1 613 N C27 LI1 1 1 N 1 A C28 LI1 613 N C28 LI1 1 1 N 1 A C29 LI1 613 N C29 LI1 1 1 N 1 A C30 LI1 613 N C30 LI1 1 1 N 1 A MET -12 A MET 1 1 Y 1 A LEU -11 A LEU 2 1 Y 1 A GLU -10 A GLU 3 1 Y 1 A LEU -9 A LEU 4 1 Y 1 A LEU -8 A LEU 5 1 Y 1 A PRO -7 A PRO 6 1 Y 1 A THR -6 A THR 7 1 Y 1 A ALA -5 A ALA 8 1 Y 1 A VAL -4 A VAL 9 1 Y 1 A GLU -3 A GLU 10 1 Y 1 A GLY -2 A GLY 11 1 Y 1 A VAL -1 A VAL 12 1 Y 1 A SER 0 A SER 13 1 Y 1 A GLN 1 A GLN 14 1 Y 1 A ALA 2 A ALA 15 1 Y 1 A GLN 3 A GLN 16 1 Y 1 A ILE 4 A ILE 17 1 Y 1 A THR 157 A THR 170 1 Y 1 A SER 158 A SER 171 1 Y 1 A LYS 159 A LYS 172 1 Y 1 A ALA 160 A ALA 173 1 Y 1 A GLU 161 A GLU 174 1 Y 1 A GLU 232 A GLU 245 1 Y 1 A ALA 233 A ALA 246 1 Y 1 A GLU 234 A GLU 247 1 Y 1 A ALA 235 A ALA 248 1 Y 1 A PRO 236 A PRO 249 1 Y 1 A GLU 237 A GLU 250 1 Y 1 A PRO 238 A PRO 251 1 Y 1 A SER 239 A SER 252 1 Y 1 A ALA 240 A ALA 253 1 Y 1 A GLY 241 A GLY 254 1 Y 1 A ASP 242 A ASP 255 1 Y 1 A GLY 243 A GLY 256 1 Y 1 A ALA 244 A ALA 257 1 Y 1 A ALA 245 A ALA 258 1 Y 1 A ALA 246 A ALA 259 1 Y 1 A THR 247 A THR 260 1 Y 1 A SER 248 A SER 261 1 Y 1 A ASP 249 A ASP 262 1 Y 1 A C2 LI1 601 WRONG HAND 1 A C18 LI1 601 WRONG HAND 1 A C48 LI1 602 WRONG HAND 1 A C13 LI1 611 WRONG HAND 1 A C18 LI1 613 WRONG HAND 1 A C12 SQU 701 WRONG HAND 1 4.87 0.50 120.30 125.17 A A A NE CZ NH1 ARG ARG ARG 7 7 7 N 1 -3.10 0.50 120.30 117.20 A A A NE CZ NH2 ARG ARG ARG 7 7 7 N 1 -3.93 0.60 121.00 117.07 A A A CB CG CD1 TYR TYR TYR 57 57 57 N 1 -5.27 0.80 121.30 116.03 A A A CG CD1 CE1 TYR TYR TYR 83 83 83 N 1 -4.23 0.70 120.80 116.57 A A A CB CG CD1 PHE PHE PHE 135 135 135 N 1 6.07 0.50 120.30 126.37 A A A NE CZ NH1 ARG ARG ARG 175 175 175 N 1 -4.07 0.50 120.30 116.23 A A A NE CZ NH2 ARG ARG ARG 175 175 175 N 1 A LYS 216 -108.71 -64.20 MEROHEDRAL TWINNING RATIO OF 54/46 0.1792000 0.1488000 0.1488000 0.1488000 1.47 25.00 8296 2091 38667 38667 8154 4.9 97.3 THIN RESOLUTION SHELLS 1 FREE R 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1C3W ENGH AND HUBER 0 0.00 2073.00 1.47 25.00 23 2073 330 0 1720 0.015 0.029 0.000 0.0231 0.057 0.058 0.065 1.47 25.00 1M0L 38667 0 -3 0.0390000 1 35.5 97.3 0.6390000 1.47 1.51 2.90 1 92.5 model building SHELX refinement SHELXL-97 data reduction DENZO data scaling SCALEPACK phasing SHELX BACTERIORHODOPSIN, 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, 2,10,23-TRIMETHYL-TETRACOSANE, RETINAL BACTERIORHODOPSIN/LIPID COMPLEX AT 1.47 A RESOLUTION 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 4 N N 5 N N A GLU 9 A GLU 22 HELX_P A GLY 31 A GLY 44 1 1 23 A ASP 36 A ASP 49 HELX_P A LEU 62 A LEU 75 1 2 27 A TRP 80 A TRP 93 HELX_P A VAL 101 A VAL 114 1 3 22 A ASP 104 A ASP 117 HELX_P A THR 128 A THR 141 1 4 25 A VAL 130 A VAL 143 HELX_P A GLY 155 A GLY 168 1 5 26 A ARG 164 A ARG 177 HELX_P A GLY 192 A GLY 205 1 6 29 A PRO 200 A PRO 213 HELX_P A SER 226 A SER 239 1 7 27 A ARG 227 A ARG 240 HELX_P A PHE 230 A PHE 243 5 8 4 covale 1.321 A RET 301 P C15 RET 1_555 A LYS 216 A NZ LYS 229 1_555 ION TRANSPORT ION PUMP, MEMBRANE PROTEIN, RETINAL PROTEIN, LIPIDS, PHOTORECEPTOR, HALOARCHAEA, 7-TRANSMEMBRANE, SERPENTINE, MEROHEDRAL TWINNING, ION TRANSPORT BACR_HALN1 UNP 1 1 P02945 MLELLPTAVEGVSQAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLT MVPFGGEQNPIYWARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLY ILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSR AIFGEAEAPEPSAGDGAAATSD 1 262 1M0L -12 249 P02945 A 1 1 262 2 anti-parallel A THR 67 A THR 80 A PHE 71 A PHE 84 A GLU 74 A GLU 87 A ILE 78 A ILE 91 BINDING SITE FOR RESIDUE LI1 A 601 Software 7 BINDING SITE FOR RESIDUE LI1 A 602 Software 12 BINDING SITE FOR RESIDUE LI1 A 603 Software 6 BINDING SITE FOR RESIDUE LI1 A 604 Software 3 BINDING SITE FOR RESIDUE LI1 A 605 Software 2 BINDING SITE FOR RESIDUE LI1 A 606 Software 4 BINDING SITE FOR RESIDUE LI1 A 607 Software 10 BINDING SITE FOR RESIDUE LI1 A 608 Software 2 BINDING SITE FOR RESIDUE LI1 A 609 Software 3 BINDING SITE FOR RESIDUE LI1 A 610 Software 9 BINDING SITE FOR RESIDUE LI1 A 611 Software 5 BINDING SITE FOR RESIDUE LI1 A 612 Software 11 BINDING SITE FOR RESIDUE LI1 A 613 Software 4 BINDING SITE FOR RESIDUE SQU A 701 Software 8 BINDING SITE FOR RESIDUE RET A 301 Software 12 A ILE 11 A ILE 24 7 3_675 A PHE 54 A PHE 67 7 2_665 A ILE 140 A ILE 153 7 1_555 A LI1 606 G LI1 7 2_665 A LI1 608 I LI1 7 1_555 A LI1 612 M LI1 7 2_665 A SQU 701 O SQU 7 3_675 A TRP 12 A TRP 25 12 3_675 A TYR 131 A TYR 144 12 1_555 A PHE 135 A PHE 148 12 1_555 A VAL 136 A VAL 149 12 1_555 A ALA 139 A ALA 152 12 1_555 A SER 162 A SER 175 12 5_564 A PRO 165 A PRO 178 12 5_564 A ASN 202 A ASN 215 12 3_675 A ILE 203 A ILE 216 12 3_675 A LEU 206 A LEU 219 12 3_675 A LEU 207 A LEU 220 12 3_675 A LI1 603 D LI1 12 1_555 A LEU 190 A LEU 203 6 1_555 A ILE 198 A ILE 211 6 3_675 A ILE 198 A ILE 211 6 1_555 A VAL 199 A VAL 212 6 3_675 A LI1 602 C LI1 6 1_555 A LI1 604 E LI1 6 3_675 A ILE 198 A ILE 211 3 1_555 A LI1 603 D LI1 3 2_765 A LI1 610 K LI1 3 1_555 A LI1 606 G LI1 2 2_655 A LI1 611 L LI1 2 2_655 A LEU 22 A LEU 35 4 1_555 A LI1 601 B LI1 4 3_565 A LI1 605 F LI1 4 3_665 A LI1 611 L LI1 4 1_555 A THR 55 A THR 68 10 1_555 A MET 56 A MET 69 10 1_555 A TYR 64 A TYR 77 10 1_555 A TRP 80 A TRP 93 10 1_555 A TRP 80 A TRP 93 10 3_565 A ALA 84 A ALA 97 10 3_565 A PHE 88 A PHE 101 10 3_565 A PHE 88 A PHE 101 10 1_555 A GLY 116 A GLY 129 10 3_565 A LEU 127 A LEU 140 10 3_565 A LI1 601 B LI1 2 1_555 A SQU 701 O SQU 2 3_675 A PHE 154 A PHE 167 3 1_555 A ASN 176 A ASN 189 3 3_675 A LI1 610 K LI1 3 3_675 A PHE 153 A PHE 166 9 1_555 A LYS 172 A LYS 185 9 1_555 A ASN 176 A ASN 189 9 1_555 A VAL 179 A VAL 192 9 1_555 A VAL 180 A VAL 193 9 1_555 A SER 183 A SER 196 9 1_555 A VAL 187 A VAL 200 9 1_555 A LI1 604 E LI1 9 1_555 A LI1 609 J LI1 9 2_765 A LEU 22 A LEU 35 5 1_555 A TYR 26 A TYR 39 5 1_555 A LI1 605 F LI1 5 3_665 A LI1 606 G LI1 5 1_555 A SQU 701 O SQU 5 2_655 A THR 24 A THR 37 11 1_555 A LEU 25 A LEU 38 11 1_555 A LEU 28 A LEU 41 11 1_555 A TYR 43 A TYR 56 11 1_555 A ALA 44 A ALA 57 11 1_555 A THR 47 A THR 60 11 1_555 A ALA 110 A ALA 123 11 3_565 A TYR 147 A TYR 160 11 3_565 A HOH 512 Q HOH 11 1_555 A HOH 513 Q HOH 11 1_555 A LI1 601 B LI1 11 3_565 A LEU 87 A LEU 100 4 1_555 A PRO 91 A PRO 104 4 1_555 A LEU 95 A LEU 108 4 1_555 A VAL 112 A VAL 125 4 1_555 A LEU 19 A LEU 32 8 1_555 A SER 214 A SER 227 8 1_555 A VAL 217 A VAL 230 8 1_555 A GLY 218 A GLY 231 8 1_555 A LEU 221 A LEU 234 8 1_555 A LI1 601 B LI1 8 2_765 A LI1 608 I LI1 8 2_765 A LI1 611 L LI1 8 3_665 A TRP 86 A TRP 99 12 1_555 A THR 90 A THR 103 12 1_555 A MET 118 A MET 131 12 1_555 A TRP 138 A TRP 151 12 1_555 A SER 141 A SER 154 12 1_555 A THR 142 A THR 155 12 1_555 A TRP 182 A TRP 195 12 1_555 A TYR 185 A TYR 198 12 1_555 A PRO 186 A PRO 199 12 1_555 A TRP 189 A TRP 202 12 1_555 A ASP 212 A ASP 225 12 1_555 A LYS 216 A LYS 229 12 1_555 173 P 63