0.006543
0.003777
0.000000
0.000000
0.007555
0.000000
0.000000
0.000000
0.011579
0.00000
0.00000
0.00000
Liu, W.
Rogers, C.J.
Fisher, A.J.
Toney, M.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
152.840
152.840
86.360
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C12 H20 N2 O8 P2
382.243
(1R)-1-[((1E)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLENE)AMINO]-1-METHYLPROPYLPHOSPHONIC ACID
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
K
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
S
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
Y
251
N
C
Y
252
N
C
Y
253
N
C
N
254
N
C
Y
255
N
C
Y
256
N
C
N
257
N
O
N
258
N
C
N
259
N
N
Y
260
N
N
N
261
N
C
N
262
N
O
N
263
R
C
N
264
N
P
N
265
N
C
N
266
N
C
N
267
N
P
N
268
N
O
N
269
N
O
N
270
N
O
N
271
N
O
N
272
N
O
N
273
N
O
N
274
N
C
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
NA
N
296
N
N
N
297
S
C
N
298
N
C
N
299
N
O
N
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
N
324
N
C
N
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
O
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
R
C
N
355
N
O
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
N
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
N
405
N
O
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
N
N
419
S
C
N
420
N
C
N
421
N
O
N
422
N
C
N
423
N
C
N
424
N
C
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
Y
237
N
doub
Y
238
N
sing
N
239
N
sing
Y
240
N
sing
N
241
N
sing
Y
242
N
doub
N
243
N
sing
N
244
E
doub
N
245
N
sing
Y
246
N
doub
N
247
N
sing
Y
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
Y
292
N
doub
Y
293
N
sing
Y
294
N
sing
N
295
N
sing
Y
296
N
doub
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
Y
361
N
doub
Y
362
N
sing
Y
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
Y
389
N
doub
Y
390
N
sing
Y
391
N
sing
N
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
41
12320
12328
10.1021/bi026318g
12369820
Aminophosphonate Inhibitors of Dialkylglycine Decarboxylase: Structural Basis for Slow Binding Inhibition
2002
10.2210/pdb1m0o/pdb
pdb_00001m0o
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
IMAGE PLATE
2001-05-12
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU
46577.402
2,2-Dialkylglycine decarboxylase
4.1.1.64
1
man
polymer
39.098
POTASSIUM ION
1
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
382.243
(1R)-1-[((1E)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLENE)AMINO]-1-METHYLPROPYLPHOSPHONIC ACID
1
syn
non-polymer
18.015
water
168
nat
water
DGD
no
no
MSLNDDATFWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFS
EMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPA
AVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLL
ILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDV
VQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG
MGGVFRIAPPLTVSEDEIDLGLSLLGQAIERAL
MSLNDDATFWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFS
EMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPA
AVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLL
ILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDV
VQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG
MGGVFRIAPPLTVSEDEIDLGLSLLGQAIERAL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Burkholderia
Escherichia
sample
292
Burkholderia cepacia
562
Escherichia coli
plasmid
pBTac1
1
3.12
61
6.4
15% PEG 4000, 0.20 - 0.40 M SODIUM PYRUVATE, 0.015 M MES-KOH (pH 6.4)
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-10-23
1
1
2008-04-28
1
2
2011-07-13
1
3
2019-07-24
1
4
2024-02-14
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Same protein complexed with 1-Aminocyclopentanephosphonate
Same protein complexed with 1-Amino-1-phenylethanephosphonate
Same protein complexed with S-1-aminoethanephosphonate
SEQUENCE
AUTHORS STATE THAT RESIDUES GLN 15 AND GLY 81
FROM THE SWISSPROT ENTRY ARE INCORRECT. THESE
RESIDUES SHOULD BE HIS 15 AND GLU 81 AS IN
AUTHORS' SEQUENCE.
RCSB
Y
RCSB
2002-06-13
REL
K
POTASSIUM ION
NA
SODIUM ION
MPM
(1R)-1-[((1E)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLENE)AMINO]-1-METHYLPROPYLPHOSPHONIC ACID
HOH
water
1DKA
PDB entry 1DKA
PDB
experimental model
K
435
2
K
K
435
A
NA
436
3
NA
NA
436
A
EMP
434
4
MPM
MPM
434
A
WAT
437
5
HOH
HOH
437
A
WAT
438
5
HOH
HOH
438
A
WAT
439
5
HOH
HOH
439
A
WAT
440
5
HOH
HOH
440
A
WAT
441
5
HOH
HOH
441
A
WAT
442
5
HOH
HOH
442
A
WAT
443
5
HOH
HOH
443
A
WAT
444
5
HOH
HOH
444
A
WAT
445
5
HOH
HOH
445
A
WAT
446
5
HOH
HOH
446
A
WAT
447
5
HOH
HOH
447
A
WAT
448
5
HOH
HOH
448
A
WAT
449
5
HOH
HOH
449
A
WAT
450
5
HOH
HOH
450
A
WAT
451
5
HOH
HOH
451
A
WAT
452
5
HOH
HOH
452
A
WAT
453
5
HOH
HOH
453
A
WAT
454
5
HOH
HOH
454
A
WAT
455
5
HOH
HOH
455
A
WAT
456
5
HOH
HOH
456
A
WAT
457
5
HOH
HOH
457
A
WAT
458
5
HOH
HOH
458
A
WAT
459
5
HOH
HOH
459
A
WAT
460
5
HOH
HOH
460
A
WAT
461
5
HOH
HOH
461
A
WAT
462
5
HOH
HOH
462
A
WAT
463
5
HOH
HOH
463
A
WAT
464
5
HOH
HOH
464
A
WAT
465
5
HOH
HOH
465
A
WAT
466
5
HOH
HOH
466
A
WAT
467
5
HOH
HOH
467
A
WAT
468
5
HOH
HOH
468
A
WAT
469
5
HOH
HOH
469
A
WAT
470
5
HOH
HOH
470
A
WAT
471
5
HOH
HOH
471
A
WAT
472
5
HOH
HOH
472
A
WAT
473
5
HOH
HOH
473
A
WAT
474
5
HOH
HOH
474
A
WAT
475
5
HOH
HOH
475
A
WAT
476
5
HOH
HOH
476
A
WAT
477
5
HOH
HOH
477
A
WAT
478
5
HOH
HOH
478
A
WAT
479
5
HOH
HOH
479
A
WAT
480
5
HOH
HOH
480
A
WAT
481
5
HOH
HOH
481
A
WAT
482
5
HOH
HOH
482
A
WAT
483
5
HOH
HOH
483
A
WAT
484
5
HOH
HOH
484
A
WAT
485
5
HOH
HOH
485
A
WAT
486
5
HOH
HOH
486
A
WAT
487
5
HOH
HOH
487
A
WAT
488
5
HOH
HOH
488
A
WAT
489
5
HOH
HOH
489
A
WAT
490
5
HOH
HOH
490
A
WAT
491
5
HOH
HOH
491
A
WAT
492
5
HOH
HOH
492
A
WAT
493
5
HOH
HOH
493
A
WAT
494
5
HOH
HOH
494
A
WAT
495
5
HOH
HOH
495
A
WAT
496
5
HOH
HOH
496
A
WAT
497
5
HOH
HOH
497
A
WAT
498
5
HOH
HOH
498
A
WAT
499
5
HOH
HOH
499
A
WAT
500
5
HOH
HOH
500
A
WAT
501
5
HOH
HOH
501
A
WAT
502
5
HOH
HOH
502
A
WAT
503
5
HOH
HOH
503
A
WAT
504
5
HOH
HOH
504
A
WAT
505
5
HOH
HOH
505
A
WAT
506
5
HOH
HOH
506
A
WAT
507
5
HOH
HOH
507
A
WAT
508
5
HOH
HOH
508
A
WAT
509
5
HOH
HOH
509
A
WAT
510
5
HOH
HOH
510
A
WAT
511
5
HOH
HOH
511
A
WAT
512
5
HOH
HOH
512
A
WAT
513
5
HOH
HOH
513
A
WAT
514
5
HOH
HOH
514
A
WAT
515
5
HOH
HOH
515
A
WAT
516
5
HOH
HOH
516
A
WAT
517
5
HOH
HOH
517
A
WAT
518
5
HOH
HOH
518
A
WAT
519
5
HOH
HOH
519
A
WAT
520
5
HOH
HOH
520
A
WAT
521
5
HOH
HOH
521
A
WAT
522
5
HOH
HOH
522
A
WAT
523
5
HOH
HOH
523
A
WAT
524
5
HOH
HOH
524
A
WAT
525
5
HOH
HOH
525
A
WAT
526
5
HOH
HOH
526
A
WAT
527
5
HOH
HOH
527
A
WAT
528
5
HOH
HOH
528
A
WAT
529
5
HOH
HOH
529
A
WAT
530
5
HOH
HOH
530
A
WAT
531
5
HOH
HOH
531
A
WAT
532
5
HOH
HOH
532
A
WAT
533
5
HOH
HOH
533
A
WAT
534
5
HOH
HOH
534
A
WAT
535
5
HOH
HOH
535
A
WAT
536
5
HOH
HOH
536
A
WAT
537
5
HOH
HOH
537
A
WAT
538
5
HOH
HOH
538
A
WAT
539
5
HOH
HOH
539
A
WAT
540
5
HOH
HOH
540
A
WAT
541
5
HOH
HOH
541
A
WAT
542
5
HOH
HOH
542
A
WAT
543
5
HOH
HOH
543
A
WAT
544
5
HOH
HOH
544
A
WAT
545
5
HOH
HOH
545
A
WAT
546
5
HOH
HOH
546
A
WAT
547
5
HOH
HOH
547
A
WAT
548
5
HOH
HOH
548
A
WAT
549
5
HOH
HOH
549
A
WAT
550
5
HOH
HOH
550
A
WAT
551
5
HOH
HOH
551
A
WAT
552
5
HOH
HOH
552
A
WAT
553
5
HOH
HOH
553
A
WAT
554
5
HOH
HOH
554
A
WAT
555
5
HOH
HOH
555
A
WAT
556
5
HOH
HOH
556
A
WAT
557
5
HOH
HOH
557
A
WAT
558
5
HOH
HOH
558
A
WAT
559
5
HOH
HOH
559
A
WAT
560
5
HOH
HOH
560
A
WAT
561
5
HOH
HOH
561
A
WAT
562
5
HOH
HOH
562
A
WAT
563
5
HOH
HOH
563
A
WAT
564
5
HOH
HOH
564
A
WAT
565
5
HOH
HOH
565
A
WAT
566
5
HOH
HOH
566
A
WAT
567
5
HOH
HOH
567
A
WAT
568
5
HOH
HOH
568
A
WAT
569
5
HOH
HOH
569
A
WAT
570
5
HOH
HOH
570
A
WAT
571
5
HOH
HOH
571
A
WAT
572
5
HOH
HOH
572
A
WAT
573
5
HOH
HOH
573
A
WAT
574
5
HOH
HOH
574
A
WAT
575
5
HOH
HOH
575
A
WAT
576
5
HOH
HOH
576
A
WAT
577
5
HOH
HOH
577
A
WAT
578
5
HOH
HOH
578
A
WAT
579
5
HOH
HOH
579
A
WAT
580
5
HOH
HOH
580
A
WAT
581
5
HOH
HOH
581
A
WAT
582
5
HOH
HOH
582
A
WAT
583
5
HOH
HOH
583
A
WAT
584
5
HOH
HOH
584
A
WAT
585
5
HOH
HOH
585
A
WAT
586
5
HOH
HOH
586
A
WAT
587
5
HOH
HOH
587
A
WAT
588
5
HOH
HOH
588
A
WAT
589
5
HOH
HOH
589
A
WAT
590
5
HOH
HOH
590
A
WAT
591
5
HOH
HOH
591
A
WAT
592
5
HOH
HOH
592
A
WAT
593
5
HOH
HOH
593
A
WAT
594
5
HOH
HOH
594
A
WAT
595
5
HOH
HOH
595
A
WAT
596
5
HOH
HOH
596
A
WAT
597
5
HOH
HOH
597
A
WAT
598
5
HOH
HOH
598
A
WAT
599
5
HOH
HOH
599
A
WAT
600
5
HOH
HOH
600
A
WAT
601
5
HOH
HOH
601
A
WAT
602
5
HOH
HOH
602
A
WAT
603
5
HOH
HOH
603
A
WAT
604
5
HOH
HOH
604
A
n
1
1
A
n
2
2
A
LEU
3
n
3
LEU
3
A
ASN
4
n
4
ASN
4
A
ASP
5
n
5
ASP
5
A
ASP
6
n
6
ASP
6
A
ALA
7
n
7
ALA
7
A
THR
8
n
8
THR
8
A
PHE
9
n
9
PHE
9
A
TRP
10
n
10
TRP
10
A
ARG
11
n
11
ARG
11
A
ASN
12
n
12
ASN
12
A
ALA
13
n
13
ALA
13
A
ARG
14
n
14
ARG
14
A
HIS
15
n
15
HIS
15
A
HIS
16
n
16
HIS
16
A
LEU
17
n
17
LEU
17
A
VAL
18
n
18
VAL
18
A
ARG
19
n
19
ARG
19
A
TYR
20
n
20
TYR
20
A
GLY
21
n
21
GLY
21
A
GLY
22
n
22
GLY
22
A
THR
23
n
23
THR
23
A
PHE
24
n
24
PHE
24
A
GLU
25
n
25
GLU
25
A
PRO
26
n
26
PRO
26
A
MET
27
n
27
MET
27
A
ILE
28
n
28
ILE
28
A
ILE
29
n
29
ILE
29
A
GLU
30
n
30
GLU
30
A
ARG
31
n
31
ARG
31
A
ALA
32
n
32
ALA
32
A
LYS
33
n
33
LYS
33
A
GLY
34
n
34
GLY
34
A
SER
35
n
35
SER
35
A
PHE
36
n
36
PHE
36
A
VAL
37
n
37
VAL
37
A
TYR
38
n
38
TYR
38
A
ASP
39
n
39
ASP
39
A
ALA
40
n
40
ALA
40
A
ASP
41
n
41
ASP
41
A
GLY
42
n
42
GLY
42
A
ARG
43
n
43
ARG
43
A
ALA
44
n
44
ALA
44
A
ILE
45
n
45
ILE
45
A
LEU
46
n
46
LEU
46
A
ASP
47
n
47
ASP
47
A
PHE
48
n
48
PHE
48
A
THR
49
n
49
THR
49
A
SER
50
n
50
SER
50
A
GLY
51
n
51
GLY
51
A
GLN
52
n
52
GLN
52
A
MET
53
n
53
MET
53
A
SER
54
n
54
SER
54
A
ALA
55
n
55
ALA
55
A
VAL
56
n
56
VAL
56
A
LEU
57
n
57
LEU
57
A
GLY
58
n
58
GLY
58
A
HIS
59
n
59
HIS
59
A
CYS
60
n
60
CYS
60
A
HIS
61
n
61
HIS
61
A
PRO
62
n
62
PRO
62
A
GLU
63
n
63
GLU
63
A
ILE
64
n
64
ILE
64
A
VAL
65
n
65
VAL
65
A
SER
66
n
66
SER
66
A
VAL
67
n
67
VAL
67
A
ILE
68
n
68
ILE
68
A
GLY
69
n
69
GLY
69
A
GLU
70
n
70
GLU
70
A
TYR
71
n
71
TYR
71
A
ALA
72
n
72
ALA
72
A
GLY
73
n
73
GLY
73
A
LYS
74
n
74
LYS
74
A
LEU
75
n
75
LEU
75
A
ASP
76
n
76
ASP
76
A
HIS
77
n
77
HIS
77
A
LEU
78
n
78
LEU
78
A
PHE
79
n
79
PHE
79
A
SER
80
n
80
SER
80
A
GLU
81
n
81
GLU
81
A
MET
82
n
82
MET
82
A
LEU
83
n
83
LEU
83
A
SER
84
n
84
SER
84
A
ARG
85
n
85
ARG
85
A
PRO
86
n
86
PRO
86
A
VAL
87
n
87
VAL
87
A
VAL
88
n
88
VAL
88
A
ASP
89
n
89
ASP
89
A
LEU
90
n
90
LEU
90
A
ALA
91
n
91
ALA
91
A
THR
92
n
92
THR
92
A
ARG
93
n
93
ARG
93
A
LEU
94
n
94
LEU
94
A
ALA
95
n
95
ALA
95
A
ASN
96
n
96
ASN
96
A
ILE
97
n
97
ILE
97
A
THR
98
n
98
THR
98
A
PRO
99
n
99
PRO
99
A
PRO
100
n
100
PRO
100
A
GLY
101
n
101
GLY
101
A
LEU
102
n
102
LEU
102
A
ASP
103
n
103
ASP
103
A
ARG
104
n
104
ARG
104
A
ALA
105
n
105
ALA
105
A
LEU
106
n
106
LEU
106
A
LEU
107
n
107
LEU
107
A
LEU
108
n
108
LEU
108
A
SER
109
n
109
SER
109
A
THR
110
n
110
THR
110
A
GLY
111
n
111
GLY
111
A
ALA
112
n
112
ALA
112
A
GLU
113
n
113
GLU
113
A
SER
114
n
114
SER
114
A
ASN
115
n
115
ASN
115
A
GLU
116
n
116
GLU
116
A
ALA
117
n
117
ALA
117
A
ALA
118
n
118
ALA
118
A
ILE
119
n
119
ILE
119
A
ARG
120
n
120
ARG
120
A
MET
121
n
121
MET
121
A
ALA
122
n
122
ALA
122
A
LYS
123
n
123
LYS
123
A
LEU
124
n
124
LEU
124
A
VAL
125
n
125
VAL
125
A
THR
126
n
126
THR
126
A
GLY
127
n
127
GLY
127
A
LYS
128
n
128
LYS
128
A
TYR
129
n
129
TYR
129
A
GLU
130
n
130
GLU
130
A
ILE
131
n
131
ILE
131
A
VAL
132
n
132
VAL
132
A
GLY
133
n
133
GLY
133
A
PHE
134
n
134
PHE
134
A
ALA
135
n
135
ALA
135
A
GLN
136
n
136
GLN
136
A
SER
137
n
137
SER
137
A
TRP
138
n
138
TRP
138
A
HIS
139
n
139
HIS
139
A
GLY
140
n
140
GLY
140
A
MET
141
n
141
MET
141
A
THR
142
n
142
THR
142
A
GLY
143
n
143
GLY
143
A
ALA
144
n
144
ALA
144
A
ALA
145
n
145
ALA
145
A
ALA
146
n
146
ALA
146
A
SER
147
n
147
SER
147
A
ALA
148
n
148
ALA
148
A
THR
149
n
149
THR
149
A
TYR
150
n
150
TYR
150
A
SER
151
n
151
SER
151
A
ALA
152
n
152
ALA
152
A
GLY
153
n
153
GLY
153
A
ARG
154
n
154
ARG
154
A
LYS
155
n
155
LYS
155
A
GLY
156
n
156
GLY
156
A
VAL
157
n
157
VAL
157
A
GLY
158
n
158
GLY
158
A
PRO
159
n
159
PRO
159
A
ALA
160
n
160
ALA
160
A
ALA
161
n
161
ALA
161
A
VAL
162
n
162
VAL
162
A
GLY
163
n
163
GLY
163
A
SER
164
n
164
SER
164
A
PHE
165
n
165
PHE
165
A
ALA
166
n
166
ALA
166
A
ILE
167
n
167
ILE
167
A
PRO
168
n
168
PRO
168
A
ALA
169
n
169
ALA
169
A
PRO
170
n
170
PRO
170
A
PHE
171
n
171
PHE
171
A
THR
172
n
172
THR
172
A
TYR
173
n
173
TYR
173
A
ARG
174
n
174
ARG
174
A
PRO
175
n
175
PRO
175
A
ARG
176
n
176
ARG
176
A
PHE
177
n
177
PHE
177
A
GLU
178
n
178
GLU
178
A
ARG
179
n
179
ARG
179
A
ASN
180
n
180
ASN
180
A
GLY
181
n
181
GLY
181
A
ALA
182
n
182
ALA
182
A
TYR
183
n
183
TYR
183
A
ASP
184
n
184
ASP
184
A
TYR
185
n
185
TYR
185
A
LEU
186
n
186
LEU
186
A
ALA
187
n
187
ALA
187
A
GLU
188
n
188
GLU
188
A
LEU
189
n
189
LEU
189
A
ASP
190
n
190
ASP
190
A
TYR
191
n
191
TYR
191
A
ALA
192
n
192
ALA
192
A
PHE
193
n
193
PHE
193
A
ASP
194
n
194
ASP
194
A
LEU
195
n
195
LEU
195
A
ILE
196
n
196
ILE
196
A
ASP
197
n
197
ASP
197
A
ARG
198
n
198
ARG
198
A
GLN
199
n
199
GLN
199
A
SER
200
n
200
SER
200
A
SER
201
n
201
SER
201
A
GLY
202
n
202
GLY
202
A
ASN
203
n
203
ASN
203
A
LEU
204
n
204
LEU
204
A
ALA
205
n
205
ALA
205
A
ALA
206
n
206
ALA
206
A
PHE
207
n
207
PHE
207
A
ILE
208
n
208
ILE
208
A
ALA
209
n
209
ALA
209
A
GLU
210
n
210
GLU
210
A
PRO
211
n
211
PRO
211
A
ILE
212
n
212
ILE
212
A
LEU
213
n
213
LEU
213
A
SER
214
n
214
SER
214
A
SER
215
n
215
SER
215
A
GLY
216
n
216
GLY
216
A
GLY
217
n
217
GLY
217
A
ILE
218
n
218
ILE
218
A
ILE
219
n
219
ILE
219
A
GLU
220
n
220
GLU
220
A
LEU
221
n
221
LEU
221
A
PRO
222
n
222
PRO
222
A
ASP
223
n
223
ASP
223
A
GLY
224
n
224
GLY
224
A
TYR
225
n
225
TYR
225
A
MET
226
n
226
MET
226
A
ALA
227
n
227
ALA
227
A
ALA
228
n
228
ALA
228
A
LEU
229
n
229
LEU
229
A
LYS
230
n
230
LYS
230
A
ARG
231
n
231
ARG
231
A
LYS
232
n
232
LYS
232
A
CYS
233
n
233
CYS
233
A
GLU
234
n
234
GLU
234
A
ALA
235
n
235
ALA
235
A
ARG
236
n
236
ARG
236
A
GLY
237
n
237
GLY
237
A
MET
238
n
238
MET
238
A
LEU
239
n
239
LEU
239
A
LEU
240
n
240
LEU
240
A
ILE
241
n
241
ILE
241
A
LEU
242
n
242
LEU
242
A
ASP
243
n
243
ASP
243
A
GLU
244
n
244
GLU
244
A
ALA
245
n
245
ALA
245
A
GLN
246
n
246
GLN
246
A
THR
247
n
247
THR
247
A
GLY
248
n
248
GLY
248
A
VAL
249
n
249
VAL
249
A
GLY
250
n
250
GLY
250
A
ARG
251
n
251
ARG
251
A
THR
252
n
252
THR
252
A
GLY
253
n
253
GLY
253
A
THR
254
n
254
THR
254
A
MET
255
n
255
MET
255
A
PHE
256
n
256
PHE
256
A
ALA
257
n
257
ALA
257
A
CYS
258
n
258
CYS
258
A
GLN
259
n
259
GLN
259
A
ARG
260
n
260
ARG
260
A
ASP
261
n
261
ASP
261
A
GLY
262
n
262
GLY
262
A
VAL
263
n
263
VAL
263
A
THR
264
n
264
THR
264
A
PRO
265
n
265
PRO
265
A
ASP
266
n
266
ASP
266
A
ILE
267
n
267
ILE
267
A
LEU
268
n
268
LEU
268
A
THR
269
n
269
THR
269
A
LEU
270
n
270
LEU
270
A
SER
271
n
271
SER
271
A
LYS
272
n
272
LYS
272
A
THR
273
n
273
THR
273
A
LEU
274
n
274
LEU
274
A
GLY
275
n
275
GLY
275
A
ALA
276
n
276
ALA
276
A
GLY
277
n
277
GLY
277
A
LEU
278
n
278
LEU
278
A
PRO
279
n
279
PRO
279
A
LEU
280
n
280
LEU
280
A
ALA
281
n
281
ALA
281
A
ALA
282
n
282
ALA
282
A
ILE
283
n
283
ILE
283
A
VAL
284
n
284
VAL
284
A
THR
285
n
285
THR
285
A
SER
286
n
286
SER
286
A
ALA
287
n
287
ALA
287
A
ALA
288
n
288
ALA
288
A
ILE
289
n
289
ILE
289
A
GLU
290
n
290
GLU
290
A
GLU
291
n
291
GLU
291
A
ARG
292
n
292
ARG
292
A
ALA
293
n
293
ALA
293
A
HIS
294
n
294
HIS
294
A
GLU
295
n
295
GLU
295
A
LEU
296
n
296
LEU
296
A
GLY
297
n
297
GLY
297
A
TYR
298
n
298
TYR
298
A
LEU
299
n
299
LEU
299
A
PHE
300
n
300
PHE
300
A
TYR
301
n
301
TYR
301
A
THR
302
n
302
THR
302
A
THR
303
n
303
THR
303
A
HIS
304
n
304
HIS
304
A
VAL
305
n
305
VAL
305
A
SER
306
n
306
SER
306
A
ASP
307
n
307
ASP
307
A
PRO
308
n
308
PRO
308
A
LEU
309
n
309
LEU
309
A
PRO
310
n
310
PRO
310
A
ALA
311
n
311
ALA
311
A
ALA
312
n
312
ALA
312
A
VAL
313
n
313
VAL
313
A
GLY
314
n
314
GLY
314
A
LEU
315
n
315
LEU
315
A
ARG
316
n
316
ARG
316
A
VAL
317
n
317
VAL
317
A
LEU
318
n
318
LEU
318
A
ASP
319
n
319
ASP
319
A
VAL
320
n
320
VAL
320
A
VAL
321
n
321
VAL
321
A
GLN
322
n
322
GLN
322
A
ARG
323
n
323
ARG
323
A
ASP
324
n
324
ASP
324
A
GLY
325
n
325
GLY
325
A
LEU
326
n
326
LEU
326
A
VAL
327
n
327
VAL
327
A
ALA
328
n
328
ALA
328
A
ARG
329
n
329
ARG
329
A
ALA
330
n
330
ALA
330
A
ASN
331
n
331
ASN
331
A
VAL
332
n
332
VAL
332
A
MET
333
n
333
MET
333
A
GLY
334
n
334
GLY
334
A
ASP
335
n
335
ASP
335
A
ARG
336
n
336
ARG
336
A
LEU
337
n
337
LEU
337
A
ARG
338
n
338
ARG
338
A
ARG
339
n
339
ARG
339
A
GLY
340
n
340
GLY
340
A
LEU
341
n
341
LEU
341
A
LEU
342
n
342
LEU
342
A
ASP
343
n
343
ASP
343
A
LEU
344
n
344
LEU
344
A
MET
345
n
345
MET
345
A
GLU
346
n
346
GLU
346
A
ARG
347
n
347
ARG
347
A
PHE
348
n
348
PHE
348
A
ASP
349
n
349
ASP
349
A
CYS
350
n
350
CYS
350
A
ILE
351
n
351
ILE
351
A
GLY
352
n
352
GLY
352
A
ASP
353
n
353
ASP
353
A
VAL
354
n
354
VAL
354
A
ARG
355
n
355
ARG
355
A
GLY
356
n
356
GLY
356
A
ARG
357
n
357
ARG
357
A
GLY
358
n
358
GLY
358
A
LEU
359
n
359
LEU
359
A
LEU
360
n
360
LEU
360
A
LEU
361
n
361
LEU
361
A
GLY
362
n
362
GLY
362
A
VAL
363
n
363
VAL
363
A
GLU
364
n
364
GLU
364
A
ILE
365
n
365
ILE
365
A
VAL
366
n
366
VAL
366
A
LYS
367
n
367
LYS
367
A
ASP
368
n
368
ASP
368
A
ARG
369
n
369
ARG
369
A
ARG
370
n
370
ARG
370
A
THR
371
n
371
THR
371
A
LYS
372
n
372
LYS
372
A
GLU
373
n
373
GLU
373
A
PRO
374
n
374
PRO
374
A
ALA
375
n
375
ALA
375
A
ASP
376
n
376
ASP
376
A
GLY
377
n
377
GLY
377
A
LEU
378
n
378
LEU
378
A
GLY
379
n
379
GLY
379
A
ALA
380
n
380
ALA
380
A
LYS
381
n
381
LYS
381
A
ILE
382
n
382
ILE
382
A
THR
383
n
383
THR
383
A
ARG
384
n
384
ARG
384
A
GLU
385
n
385
GLU
385
A
CYS
386
n
386
CYS
386
A
MET
387
n
387
MET
387
A
ASN
388
n
388
ASN
388
A
LEU
389
n
389
LEU
389
A
GLY
390
n
390
GLY
390
A
LEU
391
n
391
LEU
391
A
SER
392
n
392
SER
392
A
MET
393
n
393
MET
393
A
ASN
394
n
394
ASN
394
A
ILE
395
n
395
ILE
395
A
VAL
396
n
396
VAL
396
A
GLN
397
n
397
GLN
397
A
LEU
398
n
398
LEU
398
A
PRO
399
n
399
PRO
399
A
GLY
400
n
400
GLY
400
A
MET
401
n
401
MET
401
A
GLY
402
n
402
GLY
402
A
GLY
403
n
403
GLY
403
A
VAL
404
n
404
VAL
404
A
PHE
405
n
405
PHE
405
A
ARG
406
n
406
ARG
406
A
ILE
407
n
407
ILE
407
A
ALA
408
n
408
ALA
408
A
PRO
409
n
409
PRO
409
A
PRO
410
n
410
PRO
410
A
LEU
411
n
411
LEU
411
A
THR
412
n
412
THR
412
A
VAL
413
n
413
VAL
413
A
SER
414
n
414
SER
414
A
GLU
415
n
415
GLU
415
A
ASP
416
n
416
ASP
416
A
GLU
417
n
417
GLU
417
A
ILE
418
n
418
ILE
418
A
ASP
419
n
419
ASP
419
A
LEU
420
n
420
LEU
420
A
GLY
421
n
421
GLY
421
A
LEU
422
n
422
LEU
422
A
SER
423
n
423
SER
423
A
LEU
424
n
424
LEU
424
A
LEU
425
n
425
LEU
425
A
GLY
426
n
426
GLY
426
A
GLN
427
n
427
GLN
427
A
ALA
428
n
428
ALA
428
A
ILE
429
n
429
ILE
429
A
GLU
430
n
430
GLU
430
A
ARG
431
n
431
ARG
431
A
ALA
432
n
432
ALA
432
A
LEU
433
n
433
LEU
433
A
author_defined_assembly
4
tetrameric
A
LEU
78
A
O
LEU
78
1_555
A
K
435
B
K
K
1_555
A
SER
80
A
OG
SER
80
1_555
101.7
A
LEU
78
A
O
LEU
78
1_555
A
K
435
B
K
K
1_555
A
THR
303
A
O
THR
303
1_555
105.2
A
SER
80
A
OG
SER
80
1_555
A
K
435
B
K
K
1_555
A
THR
303
A
O
THR
303
1_555
72.3
A
LEU
78
A
O
LEU
78
1_555
A
K
435
B
K
K
1_555
A
VAL
305
A
O
VAL
305
1_555
154.4
A
SER
80
A
OG
SER
80
1_555
A
K
435
B
K
K
1_555
A
VAL
305
A
O
VAL
305
1_555
83.6
A
THR
303
A
O
THR
303
1_555
A
K
435
B
K
K
1_555
A
VAL
305
A
O
VAL
305
1_555
100.3
A
LEU
78
A
O
LEU
78
1_555
A
K
435
B
K
K
1_555
A
ASP
307
A
OD1
ASP
307
1_555
87.3
A
SER
80
A
OG
SER
80
1_555
A
K
435
B
K
K
1_555
A
ASP
307
A
OD1
ASP
307
1_555
162.0
A
THR
303
A
O
THR
303
1_555
A
K
435
B
K
K
1_555
A
ASP
307
A
OD1
ASP
307
1_555
90.4
A
VAL
305
A
O
VAL
305
1_555
A
K
435
B
K
K
1_555
A
ASP
307
A
OD1
ASP
307
1_555
95.0
A
LEU
78
A
O
LEU
78
1_555
A
K
435
B
K
K
1_555
A
HOH
458
E
O
HOH
1_555
74.8
A
SER
80
A
OG
SER
80
1_555
A
K
435
B
K
K
1_555
A
HOH
458
E
O
HOH
1_555
102.1
A
THR
303
A
O
THR
303
1_555
A
K
435
B
K
K
1_555
A
HOH
458
E
O
HOH
1_555
174.3
A
VAL
305
A
O
VAL
305
1_555
A
K
435
B
K
K
1_555
A
HOH
458
E
O
HOH
1_555
79.5
A
ASP
307
A
OD1
ASP
307
1_555
A
K
435
B
K
K
1_555
A
HOH
458
E
O
HOH
1_555
95.3
A
ALA
95
A
O
ALA
95
1_555
A
NA
436
C
NA
NA
1_555
A
THR
98
A
OG1
THR
98
1_555
73.2
A
ALA
95
A
O
ALA
95
1_555
A
NA
436
C
NA
NA
1_555
A
THR
98
A
O
THR
98
1_555
85.0
A
THR
98
A
OG1
THR
98
1_555
A
NA
436
C
NA
NA
1_555
A
THR
98
A
O
THR
98
1_555
78.9
A
ALA
95
A
O
ALA
95
1_555
A
NA
436
C
NA
NA
1_555
A
PRO
99
A
O
PRO
99
1_555
165.5
A
THR
98
A
OG1
THR
98
1_555
A
NA
436
C
NA
NA
1_555
A
PRO
99
A
O
PRO
99
1_555
102.5
A
THR
98
A
O
THR
98
1_555
A
NA
436
C
NA
NA
1_555
A
PRO
99
A
O
PRO
99
1_555
80.6
A
ALA
95
A
O
ALA
95
1_555
A
NA
436
C
NA
NA
1_555
A
LEU
102
A
O
LEU
102
1_555
94.6
A
THR
98
A
OG1
THR
98
1_555
A
NA
436
C
NA
NA
1_555
A
LEU
102
A
O
LEU
102
1_555
82.5
A
THR
98
A
O
THR
98
1_555
A
NA
436
C
NA
NA
1_555
A
LEU
102
A
O
LEU
102
1_555
160.7
A
PRO
99
A
O
PRO
99
1_555
A
NA
436
C
NA
NA
1_555
A
LEU
102
A
O
LEU
102
1_555
98.5
A
ALA
95
A
O
ALA
95
1_555
A
NA
436
C
NA
NA
1_555
A
HOH
500
E
O
HOH
1_555
93.5
A
THR
98
A
OG1
THR
98
1_555
A
NA
436
C
NA
NA
1_555
A
HOH
500
E
O
HOH
1_555
156.5
A
THR
98
A
O
THR
98
1_555
A
NA
436
C
NA
NA
1_555
A
HOH
500
E
O
HOH
1_555
120.0
A
PRO
99
A
O
PRO
99
1_555
A
NA
436
C
NA
NA
1_555
A
HOH
500
E
O
HOH
1_555
94.8
A
LEU
102
A
O
LEU
102
1_555
A
NA
436
C
NA
NA
1_555
A
HOH
500
E
O
HOH
1_555
79.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_665
-x+1,-y+1,z
crystal symmetry operation
76.4200000000
132.3633227144
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z+1/3
crystal symmetry operation
0.0000000000
0.0000000000
28.7866666667
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_665
-y+1,-x+1,-z+1/3
crystal symmetry operation
76.4200000000
132.3633227144
28.7866666667
A
N
ARG
31
A
N
ARG
31
A
O
TYR
38
A
O
TYR
38
A
N
VAL
37
A
N
VAL
37
A
O
ILE
45
A
O
ILE
45
A
N
LEU
46
A
N
LEU
46
A
O
SER
392
A
O
SER
392
A
N
ARG
104
A
N
ARG
104
A
O
THR
285
A
O
THR
285
A
O
VAL
284
A
O
VAL
284
A
N
LEU
268
A
N
LEU
268
A
O
THR
269
A
O
THR
269
A
N
LEU
242
A
N
LEU
242
A
O
ASP
243
A
O
ASP
243
A
N
ALA
209
A
N
ALA
209
A
O
ALA
205
A
O
ALA
205
A
N
GLU
130
A
N
GLU
130
A
N
GLY
133
A
N
GLY
133
A
O
ILE
167
A
O
ILE
167
A
N
ARG
179
A
N
ARG
179
A
O
ALA
182
A
O
ALA
182
A
N
LEU
213
A
N
LEU
213
A
O
ILE
219
A
O
ILE
219
A
N
ARG
355
A
N
ARG
355
A
O
GLY
362
A
O
GLY
362
A
N
ILE
365
A
N
ILE
365
A
O
GLY
403
A
O
GLY
403
A
O
VAL
404
A
O
VAL
404
A
N
VAL
396
A
N
VAL
396
1
A
MET
1
A
MET
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
-4.52
0.50
120.30
115.78
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
93
93
93
N
1
-78.67
2.80
113.90
35.23
A
A
A
CB
CG1
CD1
ILE
ILE
ILE
208
208
208
N
1
A
A
CG
CD
GLU
GLU
70
70
0.098
0.015
1.515
1.613
N
1
A
A
CG1
CD1
ILE
ILE
208
208
2.207
0.069
1.500
3.707
N
1
A
A
CB
CG2
VAL
VAL
366
366
-0.158
0.021
1.524
1.366
N
1
A
ASP
6
-25.71
99.59
1
A
ALA
55
-67.94
73.26
1
A
ASP
76
-100.53
-63.82
1
A
LEU
108
-118.58
-154.43
1
A
SER
271
-170.03
-78.75
1
A
PHE
300
-158.07
71.02
1
A
ALA
408
-154.99
73.47
0.2010000
0.1390000
0.1440000
2.4
20
1187
23728
5
99.9
random
1
RESTRAINED
THROUGHOUT
2
FOURIER SYNTHESIS
PDB entry 1DKA
Engh & Huber
177
.73
2.4
20
168
3446
26
0
3252
0.024
3332
0.8
1.78
4496
1.3
17.7
2010
0
0.019
523
5
0.16
72
2
2.4
30
1M0O
23748
23748
2
-2
0.0870000
1
10.7
9.1
100
0.3490000
2.4
2.49
10.1
7.9
100
refinement
TNT
data scaling
SCALEPACK
refinement
CNS
data reduction
DENZO
phasing
CNS
Structure of Dialkylglycine Decarboxylase Complexed with 1-Amino-1-methylpropanephosphonate
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
ASP
6
A
ASP
6
HELX_P
A
LEU
17
A
LEU
17
1
1
12
A
THR
49
A
THR
49
HELX_P
A
SER
54
A
SER
54
1
2
6
A
HIS
61
A
HIS
61
HELX_P
A
LEU
75
A
LEU
75
1
3
15
A
SER
84
A
SER
84
HELX_P
A
THR
98
A
THR
98
1
4
15
A
THR
110
A
THR
110
HELX_P
A
GLY
127
A
GLY
127
1
5
18
A
THR
142
A
THR
142
HELX_P
A
ALA
148
A
ALA
148
1
6
7
A
ASP
184
A
ASP
184
HELX_P
A
SER
200
A
SER
200
1
7
17
A
GLY
224
A
GLY
224
HELX_P
A
ARG
236
A
ARG
236
1
8
13
A
PHE
256
A
PHE
256
HELX_P
A
GLY
262
A
GLY
262
1
9
7
A
SER
271
A
SER
271
HELX_P
A
ALA
276
A
ALA
276
1
10
6
A
SER
286
A
SER
286
HELX_P
A
LEU
296
A
LEU
296
1
11
11
A
ASP
307
A
ASP
307
HELX_P
A
ASP
324
A
ASP
324
1
12
18
A
GLY
325
A
GLY
325
HELX_P
A
PHE
348
A
PHE
348
1
13
24
A
GLY
377
A
GLY
377
HELX_P
A
GLY
390
A
GLY
390
1
14
14
A
SER
414
A
SER
414
HELX_P
A
LEU
433
A
LEU
433
1
15
20
metalc
2.627
A
LEU
78
A
O
LEU
78
1_555
A
K
435
B
K
K
1_555
metalc
2.621
A
SER
80
A
OG
SER
80
1_555
A
K
435
B
K
K
1_555
metalc
2.359
A
ALA
95
A
O
ALA
95
1_555
A
NA
436
C
NA
NA
1_555
metalc
2.542
A
THR
98
A
OG1
THR
98
1_555
A
NA
436
C
NA
NA
1_555
metalc
2.402
A
THR
98
A
O
THR
98
1_555
A
NA
436
C
NA
NA
1_555
metalc
2.387
A
PRO
99
A
O
PRO
99
1_555
A
NA
436
C
NA
NA
1_555
metalc
2.455
A
LEU
102
A
O
LEU
102
1_555
A
NA
436
C
NA
NA
1_555
metalc
2.970
A
THR
303
A
O
THR
303
1_555
A
K
435
B
K
K
1_555
metalc
2.822
A
VAL
305
A
O
VAL
305
1_555
A
K
435
B
K
K
1_555
metalc
2.506
A
ASP
307
A
OD1
ASP
307
1_555
A
K
435
B
K
K
1_555
metalc
2.860
A
K
435
B
K
K
1_555
A
HOH
458
E
O
HOH
1_555
metalc
2.125
A
NA
436
C
NA
NA
1_555
A
HOH
500
E
O
HOH
1_555
LYASE
Decarboxylase, pyridoxal phosphate, Lyase
DGDA_BURCE
UNP
1
1
P16932
MSLNDDATFWRNARQHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFS
GMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPA
AVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLL
ILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDV
VQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG
MGGVFRIAPPLTVSEDEIDLGLSLLGQAIERAL
1
433
1M0O
1
433
P16932
A
1
1
433
1
GLN
SEE REMARK 999
HIS
15
1M0O
A
P16932
UNP
15
15
1
GLY
SEE REMARK 999
GLU
81
1M0O
A
P16932
UNP
81
81
4
7
2
2
4
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
31
A
ARG
31
A
LYS
33
A
LYS
33
A
PHE
36
A
PHE
36
A
TYR
38
A
TYR
38
A
ALA
44
A
ALA
44
A
ASP
47
A
ASP
47
A
LEU
391
A
LEU
391
A
SER
392
A
SER
392
A
ARG
104
A
ARG
104
A
LEU
108
A
LEU
108
A
ALA
281
A
ALA
281
A
THR
285
A
THR
285
A
ILE
267
A
ILE
267
A
LEU
270
A
LEU
270
A
LEU
239
A
LEU
239
A
ASP
243
A
ASP
243
A
LEU
204
A
LEU
204
A
ALA
209
A
ALA
209
A
GLU
130
A
GLU
130
A
PHE
134
A
PHE
134
A
SER
164
A
SER
164
A
ILE
167
A
ILE
167
A
GLU
178
A
GLU
178
A
ARG
179
A
ARG
179
A
ALA
182
A
ALA
182
A
TYR
183
A
TYR
183
A
ILE
212
A
ILE
212
A
LEU
213
A
LEU
213
A
ILE
219
A
ILE
219
A
GLU
220
A
GLU
220
A
ILE
351
A
ILE
351
A
ARG
357
A
ARG
357
A
LEU
360
A
LEU
360
A
ILE
365
A
ILE
365
A
GLY
403
A
GLY
403
A
ILE
407
A
ILE
407
A
ILE
395
A
ILE
395
A
GLN
397
A
GLN
397
BINDING SITE FOR RESIDUE K A 435
A
K
435
Software
6
BINDING SITE FOR RESIDUE NA A 436
A
NA
436
Software
5
BINDING SITE FOR RESIDUE MPM A 434
A
MPM
434
Software
21
A
LEU
78
A
LEU
78
6
1_555
A
SER
80
A
SER
80
6
1_555
A
THR
303
A
THR
303
6
1_555
A
VAL
305
A
VAL
305
6
1_555
A
ASP
307
A
ASP
307
6
1_555
A
HOH
458
E
HOH
6
1_555
A
ALA
95
A
ALA
95
5
1_555
A
THR
98
A
THR
98
5
1_555
A
PRO
99
A
PRO
99
5
1_555
A
LEU
102
A
LEU
102
5
1_555
A
HOH
500
E
HOH
5
1_555
A
GLN
52
A
GLN
52
21
1_555
A
MET
53
A
MET
53
21
1_555
A
GLY
111
A
GLY
111
21
1_555
A
ALA
112
A
ALA
112
21
1_555
A
ASN
115
A
ASN
115
21
1_555
A
TRP
138
A
TRP
138
21
1_555
A
HIS
139
A
HIS
139
21
1_555
A
GLU
210
A
GLU
210
21
1_555
A
SER
215
A
SER
215
21
1_555
A
ASP
243
A
ASP
243
21
1_555
A
GLN
246
A
GLN
246
21
1_555
A
LYS
272
A
LYS
272
21
1_555
A
THR
302
A
THR
302
21
7_555
A
THR
303
A
THR
303
21
7_555
A
ARG
406
A
ARG
406
21
1_555
A
HOH
439
E
HOH
21
1_555
A
HOH
441
E
HOH
21
7_555
A
HOH
457
E
HOH
21
1_555
A
HOH
461
E
HOH
21
1_555
A
HOH
469
E
HOH
21
1_555
A
HOH
477
E
HOH
21
1_555
181
P 64 2 2