0.013873 0.008010 0.000000 0.000000 0.016020 0.000000 0.000000 0.000000 0.004072 0.00000 0.00000 0.00000 Sanishvili, R. Wu, R. Kim, D.E. Collart, F. Joachimiak, A. Midwest Center for Structural Genomics (MCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.00 90.00 120.00 72.080 72.080 245.560 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C Y 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N N N 277 S C N 278 N C N 279 N O N 280 N C N 281 N O N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 R C N 295 N O N 296 N C N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N C Y 316 N C Y 317 N C N 318 N O N 319 N O N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C N 336 N C N 337 N C N 338 N O N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N doub N 309 N sing Y 310 N doub N 311 N sing Y 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing US J.Struct.Biol. JSBIEM 0803 1047-8477 148 98 109 10.1016/j.jsb.2004.04.006 15363790 Crystal structure of Bacillus subtilis YckF: structural and functional evolution. 2004 10.2210/pdb1m3s/pdb pdb_00001m3s 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 110 1 110 1 Sagitally focusing double crystal monochromator and vertically focusing mirror CCD 2002-03-17 CUSTOM-MADE Sagitally focusing double crystal monochromator and vertically focusing mirror CCD 2002-06-07 CUSTOM-MADE Si(111) MAD M x-ray 1 Si(111) SINGLE WAVELENGTH M x-ray 1 0.9795 1.0 0.9793 1.0 0.9537 1.0 1.0332 1.0 19-ID APS 0.9795, 0.9793, 0.9537 SYNCHROTRON APS BEAMLINE 19-ID 19-ID APS 1.0332 SYNCHROTRON APS BEAMLINE 19-ID 20042.949 Hypothetical protein yckf 2 man polymer 18.015 water 203 nat water no no GMKTTEYVAEILNELHNSAAYISNEEADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEG DLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFY DAVILKLMEKKGLDSETMFTHHANLE GMKTTEYVAEILNELHNSAAYISNEEADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEG DLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFY DAVILKLMEKKGLDSETMFTHHANLE A,B APC1056 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample YckF 1423 Bacillus subtilis 511693 Escherichia coli BL21 Plasmid pMCSG7 2 2.30 46.45 VAPOR DIFFUSION, HANGING DROP 6.5 PEG 8000, Na cacodylate, Ca acetate, Glycerol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K 295 Midwest Center for Structural Genomics MCSG PSI, Protein Structure Initiative software software chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Refinement description Data collection Refinement description Data collection Database references 1 0 2003-01-21 1 1 2007-10-16 1 2 2011-07-13 1 3 2017-10-11 1 4 2019-07-24 1 5 2024-02-14 _software.classification _software.name _software.classification _software.name _software.version _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details Y RCSB Y RCSB 2002-06-28 REL HOH water HOH 9 2 HOH HOH 186 A HOH 10 2 HOH HOH 187 A HOH 11 2 HOH HOH 188 A HOH 12 2 HOH HOH 189 A HOH 13 2 HOH HOH 190 A HOH 14 2 HOH HOH 191 A HOH 15 2 HOH HOH 192 A HOH 16 2 HOH HOH 193 A HOH 17 2 HOH HOH 194 A HOH 18 2 HOH HOH 195 A HOH 19 2 HOH HOH 196 A HOH 20 2 HOH HOH 197 A HOH 21 2 HOH HOH 198 A HOH 22 2 HOH HOH 199 A HOH 23 2 HOH HOH 200 A HOH 33 2 HOH HOH 201 A HOH 34 2 HOH HOH 202 A HOH 35 2 HOH HOH 203 A HOH 36 2 HOH HOH 204 A HOH 37 2 HOH HOH 205 A HOH 42 2 HOH HOH 206 A HOH 43 2 HOH HOH 207 A HOH 44 2 HOH HOH 208 A HOH 45 2 HOH HOH 209 A HOH 46 2 HOH HOH 210 A HOH 58 2 HOH HOH 211 A HOH 59 2 HOH HOH 212 A HOH 60 2 HOH HOH 213 A HOH 61 2 HOH HOH 214 A HOH 62 2 HOH HOH 215 A HOH 65 2 HOH HOH 216 A HOH 68 2 HOH HOH 217 A HOH 69 2 HOH HOH 218 A HOH 70 2 HOH HOH 219 A HOH 71 2 HOH HOH 220 A HOH 72 2 HOH HOH 221 A HOH 73 2 HOH HOH 222 A HOH 79 2 HOH HOH 223 A HOH 80 2 HOH HOH 224 A HOH 81 2 HOH HOH 225 A HOH 82 2 HOH HOH 226 A HOH 83 2 HOH HOH 227 A HOH 84 2 HOH HOH 228 A HOH 85 2 HOH HOH 229 A HOH 86 2 HOH HOH 230 A HOH 87 2 HOH HOH 231 A HOH 88 2 HOH HOH 232 A HOH 89 2 HOH HOH 233 A HOH 90 2 HOH HOH 234 A HOH 91 2 HOH HOH 235 A HOH 92 2 HOH HOH 236 A HOH 93 2 HOH HOH 237 A HOH 94 2 HOH HOH 238 A HOH 96 2 HOH HOH 239 A HOH 103 2 HOH HOH 240 A HOH 105 2 HOH HOH 241 A HOH 108 2 HOH HOH 242 A HOH 112 2 HOH HOH 243 A HOH 113 2 HOH HOH 244 A HOH 115 2 HOH HOH 245 A HOH 116 2 HOH HOH 246 A HOH 121 2 HOH HOH 247 A HOH 122 2 HOH HOH 248 A HOH 123 2 HOH HOH 249 A HOH 124 2 HOH HOH 250 A HOH 125 2 HOH HOH 251 A HOH 126 2 HOH HOH 252 A HOH 127 2 HOH HOH 253 A HOH 128 2 HOH HOH 254 A HOH 129 2 HOH HOH 255 A HOH 130 2 HOH HOH 256 A HOH 131 2 HOH HOH 257 A HOH 132 2 HOH HOH 258 A HOH 133 2 HOH HOH 259 A HOH 137 2 HOH HOH 260 A HOH 138 2 HOH HOH 261 A HOH 139 2 HOH HOH 262 A HOH 140 2 HOH HOH 263 A HOH 141 2 HOH HOH 264 A HOH 142 2 HOH HOH 265 A HOH 144 2 HOH HOH 266 A HOH 145 2 HOH HOH 267 A HOH 146 2 HOH HOH 268 A HOH 147 2 HOH HOH 269 A HOH 148 2 HOH HOH 270 A HOH 149 2 HOH HOH 271 A HOH 150 2 HOH HOH 272 A HOH 151 2 HOH HOH 273 A HOH 153 2 HOH HOH 274 A HOH 154 2 HOH HOH 275 A HOH 155 2 HOH HOH 276 A HOH 156 2 HOH HOH 277 A HOH 157 2 HOH HOH 278 A HOH 158 2 HOH HOH 279 A HOH 159 2 HOH HOH 280 A HOH 160 2 HOH HOH 281 A HOH 161 2 HOH HOH 282 A HOH 162 2 HOH HOH 283 A HOH 163 2 HOH HOH 284 A HOH 164 2 HOH HOH 285 A HOH 165 2 HOH HOH 286 A HOH 173 2 HOH HOH 287 A HOH 177 2 HOH HOH 288 A HOH 187 2 HOH HOH 289 A HOH 190 2 HOH HOH 290 A HOH 197 2 HOH HOH 291 A HOH 198 2 HOH HOH 292 A HOH 199 2 HOH HOH 293 A HOH 200 2 HOH HOH 294 A HOH 1 2 HOH HOH 186 B HOH 2 2 HOH HOH 187 B HOH 3 2 HOH HOH 188 B HOH 4 2 HOH HOH 189 B HOH 5 2 HOH HOH 190 B HOH 6 2 HOH HOH 191 B HOH 7 2 HOH HOH 192 B HOH 8 2 HOH HOH 193 B HOH 24 2 HOH HOH 194 B HOH 25 2 HOH HOH 195 B HOH 26 2 HOH HOH 196 B HOH 27 2 HOH HOH 197 B HOH 28 2 HOH HOH 198 B HOH 29 2 HOH HOH 199 B HOH 30 2 HOH HOH 200 B HOH 31 2 HOH HOH 201 B HOH 32 2 HOH HOH 202 B HOH 38 2 HOH HOH 203 B HOH 39 2 HOH HOH 204 B HOH 40 2 HOH HOH 205 B HOH 41 2 HOH HOH 206 B HOH 47 2 HOH HOH 207 B HOH 48 2 HOH HOH 208 B HOH 49 2 HOH HOH 209 B HOH 50 2 HOH HOH 210 B HOH 51 2 HOH HOH 211 B HOH 52 2 HOH HOH 212 B HOH 53 2 HOH HOH 213 B HOH 54 2 HOH HOH 214 B HOH 55 2 HOH HOH 215 B HOH 56 2 HOH HOH 216 B HOH 57 2 HOH HOH 217 B HOH 63 2 HOH HOH 218 B HOH 64 2 HOH HOH 219 B HOH 66 2 HOH HOH 220 B HOH 67 2 HOH HOH 221 B HOH 74 2 HOH HOH 222 B HOH 75 2 HOH HOH 223 B HOH 76 2 HOH HOH 224 B HOH 77 2 HOH HOH 225 B HOH 78 2 HOH HOH 226 B HOH 95 2 HOH HOH 227 B HOH 97 2 HOH HOH 228 B HOH 98 2 HOH HOH 229 B HOH 99 2 HOH HOH 230 B HOH 100 2 HOH HOH 231 B HOH 101 2 HOH HOH 232 B HOH 102 2 HOH HOH 233 B HOH 104 2 HOH HOH 234 B HOH 106 2 HOH HOH 235 B HOH 107 2 HOH HOH 236 B HOH 109 2 HOH HOH 237 B HOH 110 2 HOH HOH 238 B HOH 111 2 HOH HOH 239 B HOH 114 2 HOH HOH 240 B HOH 117 2 HOH HOH 241 B HOH 118 2 HOH HOH 242 B HOH 119 2 HOH HOH 243 B HOH 120 2 HOH HOH 244 B HOH 134 2 HOH HOH 245 B HOH 135 2 HOH HOH 246 B HOH 136 2 HOH HOH 247 B HOH 143 2 HOH HOH 248 B HOH 152 2 HOH HOH 249 B HOH 166 2 HOH HOH 250 B HOH 167 2 HOH HOH 251 B HOH 168 2 HOH HOH 252 B HOH 169 2 HOH HOH 253 B HOH 170 2 HOH HOH 254 B HOH 171 2 HOH HOH 255 B HOH 172 2 HOH HOH 256 B HOH 174 2 HOH HOH 257 B HOH 175 2 HOH HOH 258 B HOH 176 2 HOH HOH 259 B HOH 178 2 HOH HOH 260 B HOH 179 2 HOH HOH 261 B HOH 180 2 HOH HOH 262 B HOH 181 2 HOH HOH 263 B HOH 182 2 HOH HOH 264 B HOH 183 2 HOH HOH 265 B HOH 184 2 HOH HOH 266 B HOH 185 2 HOH HOH 267 B HOH 186 2 HOH HOH 268 B HOH 188 2 HOH HOH 269 B HOH 189 2 HOH HOH 270 B HOH 191 2 HOH HOH 271 B HOH 192 2 HOH HOH 272 B HOH 193 2 HOH HOH 273 B HOH 194 2 HOH HOH 274 B HOH 195 2 HOH HOH 275 B HOH 196 2 HOH HOH 276 B HOH 201 2 HOH HOH 277 B HOH 202 2 HOH HOH 278 B HOH 203 2 HOH HOH 279 B GLY 0 n 1 GLY 0 A MET 1 n 2 MET 1 A LYS 2 n 3 LYS 2 A THR 3 n 4 THR 3 A THR 4 n 5 THR 4 A GLU 5 n 6 GLU 5 A TYR 6 n 7 TYR 6 A VAL 7 n 8 VAL 7 A ALA 8 n 9 ALA 8 A GLU 9 n 10 GLU 9 A ILE 10 n 11 ILE 10 A LEU 11 n 12 LEU 11 A ASN 12 n 13 ASN 12 A GLU 13 n 14 GLU 13 A LEU 14 n 15 LEU 14 A HIS 15 n 16 HIS 15 A ASN 16 n 17 ASN 16 A SER 17 n 18 SER 17 A ALA 18 n 19 ALA 18 A ALA 19 n 20 ALA 19 A TYR 20 n 21 TYR 20 A ILE 21 n 22 ILE 21 A SER 22 n 23 SER 22 A ASN 23 n 24 ASN 23 A GLU 24 n 25 GLU 24 A GLU 25 n 26 GLU 25 A ALA 26 n 27 ALA 26 A ASP 27 n 28 ASP 27 A GLN 28 n 29 GLN 28 A LEU 29 n 30 LEU 29 A ALA 30 n 31 ALA 30 A ASP 31 n 32 ASP 31 A HIS 32 n 33 HIS 32 A ILE 33 n 34 ILE 33 A LEU 34 n 35 LEU 34 A SER 35 n 36 SER 35 A SER 36 n 37 SER 36 A HIS 37 n 38 HIS 37 A GLN 38 n 39 GLN 38 A ILE 39 n 40 ILE 39 A PHE 40 n 41 PHE 40 A THR 41 n 42 THR 41 A ALA 42 n 43 ALA 42 A GLY 43 n 44 GLY 43 A ALA 44 n 45 ALA 44 A GLY 45 n 46 GLY 45 A ARG 46 n 47 ARG 46 A SER 47 n 48 SER 47 A GLY 48 n 49 GLY 48 A LEU 49 n 50 LEU 49 A MET 50 n 51 MET 50 A ALA 51 n 52 ALA 51 A LYS 52 n 53 LYS 52 A SER 53 n 54 SER 53 A PHE 54 n 55 PHE 54 A ALA 55 n 56 ALA 55 A MET 56 n 57 MET 56 A ARG 57 n 58 ARG 57 A LEU 58 n 59 LEU 58 A MET 59 n 60 MET 59 A HIS 60 n 61 HIS 60 A MET 61 n 62 MET 61 A GLY 62 n 63 GLY 62 A PHE 63 n 64 PHE 63 A ASN 64 n 65 ASN 64 A ALA 65 n 66 ALA 65 A HIS 66 n 67 HIS 66 A ILE 67 n 68 ILE 67 A VAL 68 n 69 VAL 68 A GLY 69 n 70 GLY 69 A GLU 70 n 71 GLU 70 A ILE 71 n 72 ILE 71 A LEU 72 n 73 LEU 72 A THR 73 n 74 THR 73 A PRO 74 n 75 PRO 74 A PRO 75 n 76 PRO 75 A LEU 76 n 77 LEU 76 A ALA 77 n 78 ALA 77 A GLU 78 n 79 GLU 78 A GLY 79 n 80 GLY 79 A ASP 80 n 81 ASP 80 A LEU 81 n 82 LEU 81 A VAL 82 n 83 VAL 82 A ILE 83 n 84 ILE 83 A ILE 84 n 85 ILE 84 A GLY 85 n 86 GLY 85 A SER 86 n 87 SER 86 A GLY 87 n 88 GLY 87 A SER 88 n 89 SER 88 A GLY 89 n 90 GLY 89 A GLU 90 n 91 GLU 90 A THR 91 n 92 THR 91 A LYS 92 n 93 LYS 92 A SER 93 n 94 SER 93 A LEU 94 n 95 LEU 94 A ILE 95 n 96 ILE 95 A HIS 96 n 97 HIS 96 A THR 97 n 98 THR 97 A ALA 98 n 99 ALA 98 A ALA 99 n 100 ALA 99 A LYS 100 n 101 LYS 100 A ALA 101 n 102 ALA 101 A LYS 102 n 103 LYS 102 A SER 103 n 104 SER 103 A LEU 104 n 105 LEU 104 A HIS 105 n 106 HIS 105 A GLY 106 n 107 GLY 106 A ILE 107 n 108 ILE 107 A VAL 108 n 109 VAL 108 A ALA 109 n 110 ALA 109 A ALA 110 n 111 ALA 110 A LEU 111 n 112 LEU 111 A THR 112 n 113 THR 112 A ILE 113 n 114 ILE 113 A ASN 114 n 115 ASN 114 A PRO 115 n 116 PRO 115 A GLU 116 n 117 GLU 116 A SER 117 n 118 SER 117 A SER 118 n 119 SER 118 A ILE 119 n 120 ILE 119 A GLY 120 n 121 GLY 120 A LYS 121 n 122 LYS 121 A GLN 122 n 123 GLN 122 A ALA 123 n 124 ALA 123 A ASP 124 n 125 ASP 124 A LEU 125 n 126 LEU 125 A ILE 126 n 127 ILE 126 A ILE 127 n 128 ILE 127 A ARG 128 n 129 ARG 128 A MET 129 n 130 MET 129 A PRO 130 n 131 PRO 130 A GLY 131 n 132 GLY 131 A SER 132 n 133 SER 132 A PRO 133 n 134 PRO 133 A LYS 134 n 135 LYS 134 A ASP 135 n 136 ASP 135 A n 137 136 A n 138 137 A n 139 138 A n 140 139 A n 141 140 A TYR 141 n 142 TYR 141 A LYS 142 n 143 LYS 142 A THR 143 n 144 THR 143 A ILE 144 n 145 ILE 144 A GLN 145 n 146 GLN 145 A PRO 146 n 147 PRO 146 A MET 147 n 148 MET 147 A GLY 148 n 149 GLY 148 A SER 149 n 150 SER 149 A LEU 150 n 151 LEU 150 A PHE 151 n 152 PHE 151 A GLU 152 n 153 GLU 152 A GLN 153 n 154 GLN 153 A THR 154 n 155 THR 154 A LEU 155 n 156 LEU 155 A LEU 156 n 157 LEU 156 A LEU 157 n 158 LEU 157 A PHE 158 n 159 PHE 158 A TYR 159 n 160 TYR 159 A ASP 160 n 161 ASP 160 A ALA 161 n 162 ALA 161 A VAL 162 n 163 VAL 162 A ILE 163 n 164 ILE 163 A LEU 164 n 165 LEU 164 A LYS 165 n 166 LYS 165 A LEU 166 n 167 LEU 166 A MET 167 n 168 MET 167 A GLU 168 n 169 GLU 168 A LYS 169 n 170 LYS 169 A LYS 170 n 171 LYS 170 A GLY 171 n 172 GLY 171 A LEU 172 n 173 LEU 172 A ASP 173 n 174 ASP 173 A SER 174 n 175 SER 174 A GLU 175 n 176 GLU 175 A THR 176 n 177 THR 176 A MET 177 n 178 MET 177 A PHE 178 n 179 PHE 178 A THR 179 n 180 THR 179 A HIS 180 n 181 HIS 180 A HIS 181 n 182 HIS 181 A ALA 182 n 183 ALA 182 A ASN 183 n 184 ASN 183 A LEU 184 n 185 LEU 184 A GLU 185 n 186 GLU 185 A GLY 0 n 1 GLY 0 B MET 1 n 2 MET 1 B LYS 2 n 3 LYS 2 B THR 3 n 4 THR 3 B THR 4 n 5 THR 4 B GLU 5 n 6 GLU 5 B TYR 6 n 7 TYR 6 B VAL 7 n 8 VAL 7 B ALA 8 n 9 ALA 8 B GLU 9 n 10 GLU 9 B ILE 10 n 11 ILE 10 B LEU 11 n 12 LEU 11 B ASN 12 n 13 ASN 12 B GLU 13 n 14 GLU 13 B LEU 14 n 15 LEU 14 B HIS 15 n 16 HIS 15 B ASN 16 n 17 ASN 16 B SER 17 n 18 SER 17 B ALA 18 n 19 ALA 18 B ALA 19 n 20 ALA 19 B TYR 20 n 21 TYR 20 B ILE 21 n 22 ILE 21 B SER 22 n 23 SER 22 B ASN 23 n 24 ASN 23 B GLU 24 n 25 GLU 24 B GLU 25 n 26 GLU 25 B ALA 26 n 27 ALA 26 B ASP 27 n 28 ASP 27 B GLN 28 n 29 GLN 28 B LEU 29 n 30 LEU 29 B ALA 30 n 31 ALA 30 B ASP 31 n 32 ASP 31 B HIS 32 n 33 HIS 32 B ILE 33 n 34 ILE 33 B LEU 34 n 35 LEU 34 B SER 35 n 36 SER 35 B SER 36 n 37 SER 36 B HIS 37 n 38 HIS 37 B GLN 38 n 39 GLN 38 B ILE 39 n 40 ILE 39 B PHE 40 n 41 PHE 40 B THR 41 n 42 THR 41 B ALA 42 n 43 ALA 42 B GLY 43 n 44 GLY 43 B ALA 44 n 45 ALA 44 B GLY 45 n 46 GLY 45 B ARG 46 n 47 ARG 46 B SER 47 n 48 SER 47 B GLY 48 n 49 GLY 48 B LEU 49 n 50 LEU 49 B MET 50 n 51 MET 50 B ALA 51 n 52 ALA 51 B LYS 52 n 53 LYS 52 B SER 53 n 54 SER 53 B PHE 54 n 55 PHE 54 B ALA 55 n 56 ALA 55 B MET 56 n 57 MET 56 B ARG 57 n 58 ARG 57 B LEU 58 n 59 LEU 58 B MET 59 n 60 MET 59 B HIS 60 n 61 HIS 60 B MET 61 n 62 MET 61 B GLY 62 n 63 GLY 62 B PHE 63 n 64 PHE 63 B ASN 64 n 65 ASN 64 B ALA 65 n 66 ALA 65 B HIS 66 n 67 HIS 66 B ILE 67 n 68 ILE 67 B VAL 68 n 69 VAL 68 B GLY 69 n 70 GLY 69 B GLU 70 n 71 GLU 70 B ILE 71 n 72 ILE 71 B LEU 72 n 73 LEU 72 B THR 73 n 74 THR 73 B PRO 74 n 75 PRO 74 B PRO 75 n 76 PRO 75 B LEU 76 n 77 LEU 76 B ALA 77 n 78 ALA 77 B GLU 78 n 79 GLU 78 B GLY 79 n 80 GLY 79 B ASP 80 n 81 ASP 80 B LEU 81 n 82 LEU 81 B VAL 82 n 83 VAL 82 B ILE 83 n 84 ILE 83 B ILE 84 n 85 ILE 84 B GLY 85 n 86 GLY 85 B SER 86 n 87 SER 86 B GLY 87 n 88 GLY 87 B SER 88 n 89 SER 88 B GLY 89 n 90 GLY 89 B GLU 90 n 91 GLU 90 B THR 91 n 92 THR 91 B LYS 92 n 93 LYS 92 B SER 93 n 94 SER 93 B LEU 94 n 95 LEU 94 B ILE 95 n 96 ILE 95 B HIS 96 n 97 HIS 96 B THR 97 n 98 THR 97 B ALA 98 n 99 ALA 98 B ALA 99 n 100 ALA 99 B LYS 100 n 101 LYS 100 B ALA 101 n 102 ALA 101 B LYS 102 n 103 LYS 102 B SER 103 n 104 SER 103 B LEU 104 n 105 LEU 104 B HIS 105 n 106 HIS 105 B GLY 106 n 107 GLY 106 B ILE 107 n 108 ILE 107 B VAL 108 n 109 VAL 108 B ALA 109 n 110 ALA 109 B ALA 110 n 111 ALA 110 B LEU 111 n 112 LEU 111 B THR 112 n 113 THR 112 B ILE 113 n 114 ILE 113 B ASN 114 n 115 ASN 114 B PRO 115 n 116 PRO 115 B GLU 116 n 117 GLU 116 B SER 117 n 118 SER 117 B SER 118 n 119 SER 118 B ILE 119 n 120 ILE 119 B GLY 120 n 121 GLY 120 B LYS 121 n 122 LYS 121 B GLN 122 n 123 GLN 122 B ALA 123 n 124 ALA 123 B ASP 124 n 125 ASP 124 B LEU 125 n 126 LEU 125 B ILE 126 n 127 ILE 126 B ILE 127 n 128 ILE 127 B ARG 128 n 129 ARG 128 B MET 129 n 130 MET 129 B PRO 130 n 131 PRO 130 B GLY 131 n 132 GLY 131 B SER 132 n 133 SER 132 B PRO 133 n 134 PRO 133 B ALA 134 n 135 LYS 134 B ASP 135 n 136 ASP 135 B GLN 136 n 137 GLN 136 B SER 137 n 138 SER 137 B ASN 138 n 139 ASN 138 B GLY 139 n 140 GLY 139 B SER 140 n 141 SER 140 B TYR 141 n 142 TYR 141 B LYS 142 n 143 LYS 142 B THR 143 n 144 THR 143 B ILE 144 n 145 ILE 144 B GLN 145 n 146 GLN 145 B PRO 146 n 147 PRO 146 B MET 147 n 148 MET 147 B GLY 148 n 149 GLY 148 B SER 149 n 150 SER 149 B LEU 150 n 151 LEU 150 B PHE 151 n 152 PHE 151 B GLU 152 n 153 GLU 152 B GLN 153 n 154 GLN 153 B THR 154 n 155 THR 154 B LEU 155 n 156 LEU 155 B LEU 156 n 157 LEU 156 B LEU 157 n 158 LEU 157 B PHE 158 n 159 PHE 158 B TYR 159 n 160 TYR 159 B ASP 160 n 161 ASP 160 B ALA 161 n 162 ALA 161 B VAL 162 n 163 VAL 162 B ILE 163 n 164 ILE 163 B LEU 164 n 165 LEU 164 B LYS 165 n 166 LYS 165 B LEU 166 n 167 LEU 166 B MET 167 n 168 MET 167 B GLU 168 n 169 GLU 168 B LYS 169 n 170 LYS 169 B LYS 170 n 171 LYS 170 B GLY 171 n 172 GLY 171 B LEU 172 n 173 LEU 172 B n 174 173 B n 175 174 B n 176 175 B THR 176 n 177 THR 176 B MET 177 n 178 MET 177 B PHE 178 n 179 PHE 178 B THR 179 n 180 THR 179 B HIS 180 n 181 HIS 180 B HIS 181 n 182 HIS 181 B ALA 182 n 183 ALA 182 B ASN 183 n 184 ASN 183 B LEU 184 n 185 LEU 184 B GLU 185 n 186 GLU 185 B 2.5311 0.2270 0.0972 1.8310 0.3202 2.6660 0.1483 0.0400 0.3375 -0.1638 -0.0291 -0.2212 -0.3502 0.1268 -0.1192 0.1880 -0.0354 0.0849 0.0094 0.0001 0.1331 refined 16.1916 51.8158 16.3063 X-RAY DIFFRACTION 3.3124 0.4034 -0.4512 1.3045 -0.1724 1.6703 0.1409 0.2074 -0.4953 -0.2093 -0.0337 0.0100 0.3463 0.0926 -0.1073 0.2748 0.0418 -0.0494 0.0406 -0.0601 0.1784 refined 13.0884 18.3364 8.9573 X-RAY DIFFRACTION 1.0395 0.1262 0.0962 1.1398 0.1678 0.8797 0.1100 0.0873 -0.0222 -0.2398 -0.0561 -0.0435 -0.0380 -0.0066 -0.0539 0.2486 -0.0022 0.0224 0.2028 0.0073 0.2320 refined 13.8071 35.7110 12.5807 X-RAY DIFFRACTION A 0 A 1 A 185 A 186 X-RAY DIFFRACTION 1 B 0 B 1 B 185 B 186 X-RAY DIFFRACTION 2 A 186 A 1 B 203 B 279 X-RAY DIFFRACTION 3 software_defined_assembly PISA 4 tetrameric software_defined_assembly PISA 2 dimeric 14120 -114 26710 4320 -31 16090 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 10_665 -y+1,-x+1,-z+1/6 crystal symmetry operation 36.0400000000 62.4231111048 40.9266666667 A O HIS 66 A O HIS 67 A N THR 41 A N THR 42 A N PHE 40 A N PHE 41 A O LEU 81 A O LEU 82 A N ILE 84 A N ILE 85 A O ALA 109 A O ALA 110 A N ALA 110 A N ALA 111 A O LEU 125 A O LEU 126 B O HIS 66 B O HIS 67 B N ILE 39 B N ILE 40 B N PHE 40 B N PHE 41 B O ILE 83 B O ILE 84 B N VAL 82 B N VAL 83 B O ILE 107 B O ILE 108 B N ALA 110 B N ALA 111 B O ILE 127 B O ILE 128 1 A CD LYS 2 A CD LYS 3 1 Y 1 A CE LYS 2 A CE LYS 3 1 Y 1 A NZ LYS 2 A NZ LYS 3 1 Y 1 A CG GLU 24 A CG GLU 25 1 Y 1 A CD GLU 24 A CD GLU 25 1 Y 1 A OE1 GLU 24 A OE1 GLU 25 1 Y 1 A OE2 GLU 24 A OE2 GLU 25 1 Y 1 B CG LYS 121 B CG LYS 122 1 Y 1 B CD LYS 121 B CD LYS 122 1 Y 1 B CE LYS 121 B CE LYS 122 1 Y 1 B NZ LYS 121 B NZ LYS 122 1 Y 1 B CG LYS 134 B CG LYS 135 1 Y 1 B CD LYS 134 B CD LYS 135 1 Y 1 B CE LYS 134 B CE LYS 135 1 Y 1 B NZ LYS 134 B NZ LYS 135 1 Y 1 B OG1 THR 176 B OG1 THR 177 1 Y 1 B CG2 THR 176 B CG2 THR 177 1 Y 1 B CG MET 177 B CG MET 178 1 Y 1 B SD MET 177 B SD MET 178 1 Y 1 B CE MET 177 B CE MET 178 1 Y 1 B CG PHE 178 B CG PHE 179 1 Y 1 B CD1 PHE 178 B CD1 PHE 179 1 Y 1 B CD2 PHE 178 B CD2 PHE 179 1 Y 1 B CE1 PHE 178 B CE1 PHE 179 1 Y 1 B CE2 PHE 178 B CE2 PHE 179 1 Y 1 B CZ PHE 178 B CZ PHE 179 1 Y 1 A GLN 136 A GLN 137 1 Y 1 A SER 137 A SER 138 1 Y 1 A ASN 138 A ASN 139 1 Y 1 A GLY 139 A GLY 140 1 Y 1 A SER 140 A SER 141 1 Y 1 B ASP 173 B ASP 174 1 Y 1 B SER 174 B SER 175 1 Y 1 B GLU 175 B GLU 176 1 Y 1 8.41 0.90 118.30 126.71 A A A CB CG OD2 ASP ASP ASP 135 135 135 N 1 5.62 0.90 118.30 123.92 A A A CB CG OD2 ASP ASP ASP 160 160 160 N 1 3.59 0.50 120.30 123.89 B B B NE CZ NH1 ARG ARG ARG 57 57 57 N 1 -4.43 0.50 120.30 115.87 B B B NE CZ NH2 ARG ARG ARG 57 57 57 N 1 A ALA 19 -64.27 18.63 1 A MET 147 -18.36 -77.67 1 B MET 1 178.10 142.70 1 B GLU 78 -39.63 135.18 1 B MET 147 47.78 -140.15 1 B LYS 170 -102.94 -155.54 1 B PHE 178 -66.89 66.17 18.524 0.45 0.23 0.00 0.45 0.00 -0.68 0.956 0.942 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.22493 0.18708 0.18897 0.18897 1.95 62.02 1389 28572 26023 5.1 95.85 3.878 0.109 RANDOM 1 THROUGHOUT 0 MAD 0.175 0.154 0.80 0.80 1.40 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.95 62.02 205 3012 0 0 2807 0.024 0.021 2861 0.003 0.020 2646 1.814 1.967 3873 1.176 3.000 6209 5.646 5.000 378 19.146 15.000 543 0.110 0.200 457 0.008 0.020 3158 0.003 0.020 504 0.244 0.200 600 0.268 0.200 2913 0.092 0.200 1607 0.178 0.200 127 0.246 0.200 25 0.284 0.200 132 0.207 0.200 23 1.129 1.500 1835 1.875 2.000 2947 2.941 3.000 1026 4.486 4.500 917 0.269 0.202 2.001 101 1745 20 1.95 60 1M3S 28687 28572 0 0.072 1,2 31.6 99.6 1.95 2.01 5 2457 0.468 100 refinement REFMAC 5.0 data collection dtDisplay data reduction HKL-2000 refinement CNS data scaling d*TREK data reduction d*TREK data reduction DTDISPLAY data scaling HKL-2000 phasing CNS Crystal structure of YckF from Bacillus subtilis 1 N N 1 N N 2 N N 2 N N A LYS 2 A LYS 3 HELX_P A ALA 19 A ALA 20 1 1 18 A SER 22 A SER 23 HELX_P A SER 36 A SER 37 1 2 15 A ALA 44 A ALA 45 HELX_P A MET 61 A MET 62 1 3 18 A THR 91 A THR 92 HELX_P A LEU 104 A LEU 105 1 4 14 A SER 117 A SER 118 HELX_P A ALA 123 A ALA 124 1 5 7 A GLY 148 A GLY 149 HELX_P A LYS 170 A LYS 171 1 6 23 B LYS 2 B LYS 3 HELX_P B ILE 21 B ILE 22 1 7 20 B SER 22 B SER 23 HELX_P B SER 36 B SER 37 1 8 15 B ALA 44 B ALA 45 HELX_P B MET 61 B MET 62 1 9 18 B THR 91 B THR 92 HELX_P B LEU 104 B LEU 105 1 10 14 B SER 117 B SER 118 HELX_P B ALA 123 B ALA 124 1 11 7 B SER 132 B SER 133 HELX_P B ASN 138 B ASN 139 1 12 7 B GLY 148 B GLY 149 HELX_P B LYS 170 B LYS 171 1 13 23 STRUCTURAL GENOMICS, UNKNOWN FUNCTION STRUCTURAL GENOMICS, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION HXLB_BACSU UNP 1 1 P42404 MKTTEYVAEILNELHNSAAYISNEEADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGD LVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFYD AVILKLMEKKGLDSETMFTHHANLE 1 185 1M3S 1 185 P42404 A 1 2 186 1 185 1M3S 1 185 P42404 B 1 2 186 1 expression tag GLY 0 1M3S A P42404 UNP 1 2 expression tag GLY 0 1M3S B P42404 UNP 1 5 5 parallel parallel parallel parallel parallel parallel parallel parallel A ALA 65 A ALA 66 A ILE 67 A ILE 68 A ILE 39 A ILE 40 A ALA 42 A ALA 43 A LEU 81 A LEU 82 A GLY 85 A GLY 86 A ILE 107 A ILE 108 A THR 112 A THR 113 A LEU 125 A LEU 126 A ARG 128 A ARG 129 B ALA 65 B ALA 66 B ILE 67 B ILE 68 B ILE 39 B ILE 40 B ALA 42 B ALA 43 B LEU 81 B LEU 82 B GLY 85 B GLY 86 B ILE 107 B ILE 108 B THR 112 B THR 113 B LEU 125 B LEU 126 B ARG 128 B ARG 129 179 P 65 2 2