1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Deane, J.E.
Mackay, J.P.
Kwan, A.H.Y.
Sum, E.Y.
Visvader, J.E.
Matthews, J.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
UK
EMBO J.
EMJODG
0897
0261-4189
22
2224
2233
10.1093/emboj/cdg196
12727888
Structural basis for the recognition of ldb1 by the N-terminal LIM domains of LMO2 and LMO4
2003
NE
J.Biomol.NMR
JBNME9
0800
0925-2738
23
165
166
10.1023/A:1016363414644
1H, 15N and 13C assignments of FLIN4, an intramolecular LMO4:ldb1 complex.
2002
UK
Protein Eng.
PRENE9
0859
0269-2139
14
493
499
10.1093/protein/14.7.493
Design, production and characterization of FLIN2 and FLIN4: the engineering of intramolecular ldb1:LMO complexes
2001
10.2210/pdb1m3v/pdb
pdb_00001m3v
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
Fusion protein comprises LIM domain transcription factor LMO4 (residues 16-86) via glycine-rich linker (GGSGGHMGSGG), LIM domain-binding protein 1 (residues 300-339).
13017.508
fusion of the LIM interacting domain of ldb1 and the N-terminal LIM domain of LMO4
C37S, C49S
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
FLIN4
no
no
GSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS
GGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDE
GSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS
GGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
Escherichia coli
sample
10090
Mus musculus
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
plasmid
pGEX-2T
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
pdbx_database_status
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
Database references
Derived calculations
Other
1
0
2003-05-13
1
1
2008-04-28
1
2
2011-07-13
1
3
2020-02-26
1
4
2021-11-10
1
5
2023-06-14
_pdbx_database_status.status_code_cs
_pdbx_nmr_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_pdbx_database_status.status_code_nmr_data
5309 contains Deposition of 1H, 15N and 13C assignments of FLIN4
RCSB
Y
PDBJ
2002-06-30
REL
REL
REL
REL
ZN
ZINC ION
This structure was solved using triple resonance NMR techniques. In addition to the experiments listed above HNCO, HN(CA)CO, CC(CO)NH-TOCSY and HCC(CO)NH-TOCSY were also used for backbone and side chain assignments.
structures with the lowest energy
200
20
2D NOESY
2D TOCSY
DQF-COSY
3D_15N-separated_NOESY
HNHA
HNCA
HN(CO)CA
HNCACB
CBCA(CO)NH
HCCH-TOCSY
7.0
ambient
298
K
Structure calculations were performed using ARIA 1.1. Final structures are based on 1804 unambiguous and 81 ambiguous NOE-derived distance restraints and 112 angle constraints from coupling constant data and predictions from chemical shift analysis using TALOS.
simulated annealing molecular dynamics torsion angle dynamics
1
lowest energy
0.2mM FLIN4, 20mM NaH2PO4, pH7.0, 50mM NaCl, 1mM DTT, 20uM d4-TSP
95% H2O/5% D2O
0.5mM [15N]-FLIN4, 20mM NaH2PO4, pH7.0, 50mM NaCl, 1mM DTT, 20uM d4-TSP
95% H2O/5% D2O
1.0mM [13C,15N]-FLIN4, 20mM NaH2PO4, pH7.0, 50mM NaCl, 1mM DTT, 20uM d4-TSP
95% H2O/5% D2O
Bruker
processing
XwinNMR
2.5
Bartels et al
data analysis
XEASY
1.3.13
Guntert et al
refinement
DYANA
1.5
Linge et al
structure solution
ARIA
1.1.2
Cornilescu et al
structure solution
TALOS
98.040.21.02
600
Bruker
DRX
ZN
123
2
ZN
ZN
123
A
ZN
124
2
ZN
ZN
124
A
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
LEU
3
n
3
LEU
3
A
SER
4
n
4
SER
4
A
TRP
5
n
5
TRP
5
A
LYS
6
n
6
LYS
6
A
ARG
7
n
7
ARG
7
A
CYS
8
n
8
CYS
8
A
ALA
9
n
9
ALA
9
A
GLY
10
n
10
GLY
10
A
CYS
11
n
11
CYS
11
A
GLY
12
n
12
GLY
12
A
GLY
13
n
13
GLY
13
A
LYS
14
n
14
LYS
14
A
ILE
15
n
15
ILE
15
A
ALA
16
n
16
ALA
16
A
ASP
17
n
17
ASP
17
A
ARG
18
n
18
ARG
18
A
PHE
19
n
19
PHE
19
A
LEU
20
n
20
LEU
20
A
LEU
21
n
21
LEU
21
A
TYR
22
n
22
TYR
22
A
ALA
23
n
23
ALA
23
A
MET
24
n
24
MET
24
A
ASP
25
n
25
ASP
25
A
SER
26
n
26
SER
26
A
TYR
27
n
27
TYR
27
A
TRP
28
n
28
TRP
28
A
HIS
29
n
29
HIS
29
A
SER
30
n
30
SER
30
A
ARG
31
n
31
ARG
31
A
CYS
32
n
32
CYS
32
A
LEU
33
n
33
LEU
33
A
LYS
34
n
34
LYS
34
A
CYS
35
n
35
CYS
35
A
SER
36
n
36
SER
36
A
SER
37
n
37
SER
37
A
CYS
38
n
38
CYS
38
A
GLN
39
n
39
GLN
39
A
ALA
40
n
40
ALA
40
A
GLN
41
n
41
GLN
41
A
LEU
42
n
42
LEU
42
A
GLY
43
n
43
GLY
43
A
ASP
44
n
44
ASP
44
A
ILE
45
n
45
ILE
45
A
GLY
46
n
46
GLY
46
A
THR
47
n
47
THR
47
A
SER
48
n
48
SER
48
A
SER
49
n
49
SER
49
A
TYR
50
n
50
TYR
50
A
THR
51
n
51
THR
51
A
LYS
52
n
52
LYS
52
A
SER
53
n
53
SER
53
A
GLY
54
n
54
GLY
54
A
MET
55
n
55
MET
55
A
ILE
56
n
56
ILE
56
A
LEU
57
n
57
LEU
57
A
CYS
58
n
58
CYS
58
A
ARG
59
n
59
ARG
59
A
ASN
60
n
60
ASN
60
A
ASP
61
n
61
ASP
61
A
TYR
62
n
62
TYR
62
A
ILE
63
n
63
ILE
63
A
ARG
64
n
64
ARG
64
A
LEU
65
n
65
LEU
65
A
PHE
66
n
66
PHE
66
A
GLY
67
n
67
GLY
67
A
ASN
68
n
68
ASN
68
A
SER
69
n
69
SER
69
A
GLY
70
n
70
GLY
70
A
ALA
71
n
71
ALA
71
A
GLY
72
n
72
GLY
72
A
GLY
73
n
73
GLY
73
A
SER
74
n
74
SER
74
A
GLY
75
n
75
GLY
75
A
GLY
76
n
76
GLY
76
A
HIS
77
n
77
HIS
77
A
MET
78
n
78
MET
78
A
GLY
79
n
79
GLY
79
A
SER
80
n
80
SER
80
A
GLY
81
n
81
GLY
81
A
GLY
82
n
82
GLY
82
A
ASP
83
n
83
ASP
83
A
VAL
84
n
84
VAL
84
A
MET
85
n
85
MET
85
A
VAL
86
n
86
VAL
86
A
VAL
87
n
87
VAL
87
A
GLY
88
n
88
GLY
88
A
GLU
89
n
89
GLU
89
A
PRO
90
n
90
PRO
90
A
THR
91
n
91
THR
91
A
LEU
92
n
92
LEU
92
A
MET
93
n
93
MET
93
A
GLY
94
n
94
GLY
94
A
GLY
95
n
95
GLY
95
A
GLU
96
n
96
GLU
96
A
PHE
97
n
97
PHE
97
A
GLY
98
n
98
GLY
98
A
ASP
99
n
99
ASP
99
A
GLU
100
n
100
GLU
100
A
ASP
101
n
101
ASP
101
A
GLU
102
n
102
GLU
102
A
ARG
103
n
103
ARG
103
A
LEU
104
n
104
LEU
104
A
ILE
105
n
105
ILE
105
A
THR
106
n
106
THR
106
A
ARG
107
n
107
ARG
107
A
LEU
108
n
108
LEU
108
A
GLU
109
n
109
GLU
109
A
ASN
110
n
110
ASN
110
A
THR
111
n
111
THR
111
A
GLN
112
n
112
GLN
112
A
PHE
113
n
113
PHE
113
A
ASP
114
n
114
ASP
114
A
ALA
115
n
115
ALA
115
A
ALA
116
n
116
ALA
116
A
ASN
117
n
117
ASN
117
A
GLY
118
n
118
GLY
118
A
ILE
119
n
119
ILE
119
A
ASP
120
n
120
ASP
120
A
ASP
121
n
121
ASP
121
A
GLU
122
n
122
GLU
122
A
author_defined_assembly
1
monomeric
A
CYS
8
A
SG
CYS
8
1_555
A
ZN
123
B
ZN
ZN
1_555
A
CYS
11
A
SG
CYS
11
1_555
109.7
A
CYS
8
A
SG
CYS
8
1_555
A
ZN
123
B
ZN
ZN
1_555
A
HIS
29
A
ND1
HIS
29
1_555
109.8
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
123
B
ZN
ZN
1_555
A
HIS
29
A
ND1
HIS
29
1_555
108.3
A
CYS
8
A
SG
CYS
8
1_555
A
ZN
123
B
ZN
ZN
1_555
A
CYS
32
A
SG
CYS
32
1_555
109.4
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
123
B
ZN
ZN
1_555
A
CYS
32
A
SG
CYS
32
1_555
110.8
A
HIS
29
A
ND1
HIS
29
1_555
A
ZN
123
B
ZN
ZN
1_555
A
CYS
32
A
SG
CYS
32
1_555
108.9
A
CYS
35
A
SG
CYS
35
1_555
A
ZN
124
C
ZN
ZN
1_555
A
CYS
38
A
SG
CYS
38
1_555
117.2
A
CYS
35
A
SG
CYS
35
1_555
A
ZN
124
C
ZN
ZN
1_555
A
CYS
58
A
SG
CYS
58
1_555
117.7
A
CYS
38
A
SG
CYS
38
1_555
A
ZN
124
C
ZN
ZN
1_555
A
CYS
58
A
SG
CYS
58
1_555
118.2
A
CYS
35
A
SG
CYS
35
1_555
A
ZN
124
C
ZN
ZN
1_555
A
ASP
61
A
OD1
ASP
61
1_555
122.1
A
CYS
38
A
SG
CYS
38
1_555
A
ZN
124
C
ZN
ZN
1_555
A
ASP
61
A
OD1
ASP
61
1_555
71.0
A
CYS
58
A
SG
CYS
58
1_555
A
ZN
124
C
ZN
ZN
1_555
A
ASP
61
A
OD1
ASP
61
1_555
101.1
A
CYS
35
A
SG
CYS
35
1_555
A
ZN
124
C
ZN
ZN
1_555
A
ASP
61
A
OD2
ASP
61
1_555
97.7
A
CYS
38
A
SG
CYS
38
1_555
A
ZN
124
C
ZN
ZN
1_555
A
ASP
61
A
OD2
ASP
61
1_555
98.2
A
CYS
58
A
SG
CYS
58
1_555
A
ZN
124
C
ZN
ZN
1_555
A
ASP
61
A
OD2
ASP
61
1_555
100.4
A
ASP
61
A
OD1
ASP
61
1_555
A
ZN
124
C
ZN
ZN
1_555
A
ASP
61
A
OD2
ASP
61
1_555
30.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TRP
28
A
O
TRP
28
A
N
LEU
21
A
N
LEU
21
A
N
TYR
22
A
N
TYR
22
A
O
THR
106
A
O
THR
106
A
N
THR
47
A
N
THR
47
A
O
GLY
82
A
O
GLY
82
A
N
TYR
50
A
N
TYR
50
A
O
LEU
57
A
O
LEU
57
2
A
A
HA
HD2
LYS
TYR
6
27
1.16
3
A
A
HB3
H
LEU
MET
92
93
1.32
3
A
A
HA
HA3
SER
GLY
69
81
1.33
4
A
A
HZ1
OE2
LYS
GLU
6
109
1.59
5
A
A
HE3
HE3
TRP
LYS
5
14
1.28
6
A
A
HE1
HB3
TYR
ASP
50
101
1.29
6
A
A
HH12
OE2
ARG
GLU
59
102
1.59
7
A
A
HB
HA
THR
ALA
111
115
1.34
8
A
A
HZ1
OXT
LYS
GLU
6
122
1.59
9
A
A
HZ3
H
TRP
ILE
5
15
1.27
9
A
A
OD2
HH12
ASP
ARG
17
107
1.58
13
A
A
HA
HD2
LYS
TYR
6
27
1.15
15
A
A
HB2
HA
ALA
VAL
23
84
1.25
15
A
A
HG2
HB2
GLN
ASP
41
44
1.33
17
A
A
HA3
HB3
GLY
CYS
10
32
1.24
18
A
A
HB3
H
HIS
SER
29
30
1.31
18
A
A
HZ2
OE2
LYS
GLU
6
109
1.56
18
A
A
OD2
HH22
ASP
ARG
99
103
1.58
19
A
A
OE1
HG1
GLU
THR
89
91
1.58
20
A
A
HA3
HB3
GLY
CYS
10
32
1.24
1
A
ARG
7
62.64
154.29
1
A
CYS
11
-116.61
-121.39
1
A
LEU
33
-60.50
-72.98
1
A
LYS
34
56.31
166.66
1
A
ALA
40
-100.07
-161.31
1
A
SER
69
-63.68
97.72
1
A
PRO
90
-56.59
102.75
1
A
MET
93
-88.71
46.03
1
A
GLU
102
-85.89
-139.58
1
A
ASN
110
177.29
-169.48
1
A
PHE
113
-101.25
-161.19
1
A
ASP
114
-78.36
44.69
2
A
SER
2
60.35
84.93
2
A
SER
49
-175.34
147.51
2
A
ASN
68
72.90
-57.39
2
A
ALA
71
62.20
81.62
2
A
GLU
89
58.01
77.06
2
A
PRO
90
-81.37
31.49
2
A
ASN
117
75.60
-3.79
2
A
ASP
121
-128.43
-68.82
3
A
ARG
7
66.78
156.76
3
A
CYS
11
-112.35
-88.26
3
A
ASP
25
74.38
-40.64
3
A
ALA
40
-100.17
-155.24
3
A
ILE
45
-94.90
52.78
3
A
SER
48
-162.02
111.42
3
A
LEU
65
-113.54
-70.28
3
A
MET
85
-165.17
67.09
3
A
GLU
89
-153.11
73.85
3
A
LEU
92
-163.48
-135.72
3
A
GLN
112
-103.02
-100.79
3
A
ASN
117
-99.18
36.54
4
A
ARG
7
70.13
107.60
4
A
CYS
11
-122.39
-120.32
4
A
PHE
19
-160.04
67.86
4
A
ALA
40
-91.11
-149.87
4
A
SER
80
-68.42
99.66
4
A
MET
85
-135.00
-158.85
4
A
VAL
87
-144.00
-19.44
4
A
GLU
100
-79.06
43.51
4
A
ASP
101
-99.65
33.06
4
A
ASN
110
172.50
-48.12
4
A
THR
111
-143.40
31.27
4
A
GLN
112
-92.50
-81.52
4
A
ALA
115
-98.72
54.39
5
A
CYS
11
-106.42
-73.78
5
A
SER
48
-161.04
111.24
5
A
PRO
90
-75.34
29.19
5
A
PHE
97
-162.42
71.92
5
A
GLU
100
-87.11
49.02
5
A
THR
111
69.35
80.27
5
A
ASP
121
-172.24
-38.91
6
A
LEU
3
-104.10
-139.66
6
A
SER
4
52.88
-148.76
6
A
CYS
11
-110.34
-95.19
6
A
ILE
15
-73.45
-71.85
6
A
ASN
68
73.19
-63.89
6
A
HIS
77
-154.52
-84.26
6
A
SER
80
67.58
-69.32
6
A
VAL
84
160.56
-25.65
6
A
MET
93
-96.71
54.64
6
A
GLU
102
-100.64
-124.76
6
A
GLN
112
-92.75
44.06
7
A
SER
4
-81.63
41.90
7
A
TRP
5
46.50
-133.03
7
A
CYS
11
-108.67
-86.81
7
A
ASP
25
59.80
17.20
7
A
HIS
29
-83.60
-152.00
7
A
SER
69
63.69
-99.19
7
A
ASP
99
79.21
-40.06
7
A
GLU
102
-85.09
-116.67
7
A
ASN
110
-59.30
107.56
7
A
THR
111
71.33
-37.23
7
A
GLN
112
66.20
-85.35
7
A
ASP
114
62.46
63.05
7
A
ILE
119
72.55
-60.18
8
A
SER
2
52.57
-106.07
8
A
LEU
3
69.15
138.07
8
A
HIS
29
-86.73
-126.58
8
A
ILE
45
-82.32
49.07
8
A
ASN
68
-172.40
106.55
8
A
HIS
77
-146.47
-35.68
8
A
ASP
83
-169.43
-164.19
8
A
GLU
89
66.52
96.35
8
A
PHE
97
-149.15
41.96
8
A
GLU
100
-91.83
35.67
8
A
GLU
102
-77.94
-152.48
8
A
LEU
108
-63.66
-163.88
8
A
PHE
113
-89.34
-76.58
9
A
LEU
3
58.44
-147.44
9
A
ARG
7
-64.82
-174.15
9
A
CYS
11
-123.10
-115.26
9
A
PHE
19
-119.41
-153.06
9
A
GLN
41
-55.18
109.91
9
A
PHE
66
-134.32
-36.83
9
A
ASN
68
-179.11
-72.24
9
A
SER
69
-156.38
44.93
9
A
ALA
71
59.21
-152.85
9
A
SER
74
55.90
-105.21
9
A
HIS
77
-160.18
35.06
9
A
MET
78
-90.24
-61.28
9
A
VAL
86
-85.16
39.99
9
A
ASP
99
64.32
155.01
9
A
ARG
103
-172.50
29.10
9
A
ASN
110
-49.05
101.55
9
A
ASN
117
66.63
94.81
9
A
ASP
120
-128.38
-79.30
10
A
LYS
6
69.99
165.78
10
A
CYS
11
-120.14
-88.03
10
A
ASP
25
69.93
-0.11
10
A
LEU
33
-68.32
-70.21
10
A
LYS
34
50.05
-174.13
10
A
ALA
40
-100.15
-154.54
10
A
HIS
77
-166.10
61.90
10
A
SER
80
66.89
176.26
10
A
ASP
83
-83.46
46.60
10
A
VAL
87
79.17
-52.93
10
A
GLU
100
-93.80
39.40
10
A
ASP
101
-73.27
46.59
10
A
GLU
102
-100.71
-119.51
10
A
ASP
114
74.72
-65.35
10
A
ILE
119
58.33
71.20
11
A
SER
4
-69.64
94.05
11
A
LYS
6
49.48
140.10
11
A
CYS
11
-103.30
-87.11
11
A
ASN
68
174.82
-59.88
11
A
VAL
86
71.28
116.69
11
A
ASP
99
-84.90
-141.30
11
A
GLU
102
-102.05
-161.77
11
A
ASN
117
-172.28
62.04
11
A
ASP
121
61.92
-110.07
12
A
SER
37
-108.42
-72.11
12
A
GLN
41
-51.39
103.67
12
A
MET
78
71.78
-61.56
12
A
GLU
89
57.05
76.53
12
A
PRO
90
-80.23
47.91
12
A
LEU
92
-128.49
-51.90
12
A
GLU
102
-77.66
-166.50
12
A
PHE
113
-86.70
-73.80
12
A
ASP
120
-102.35
-80.32
12
A
ASP
121
-170.01
117.87
13
A
LEU
3
-115.49
57.21
13
A
SER
4
-143.15
-153.50
13
A
LYS
6
48.67
-104.95
13
A
ARG
7
65.70
92.85
13
A
LYS
14
-67.26
98.60
13
A
ILE
15
-51.32
-72.56
13
A
LYS
34
42.13
-178.69
13
A
ASN
68
72.53
-57.49
13
A
ALA
71
-141.11
-18.51
13
A
MET
78
-165.86
50.08
13
A
MET
85
-104.75
-123.70
13
A
LEU
92
-76.90
-81.00
13
A
MET
93
55.57
-101.40
13
A
PHE
97
-140.24
32.88
13
A
ASP
99
-170.33
1.94
13
A
LEU
108
-63.33
-174.23
13
A
ASN
110
-162.03
20.30
13
A
THR
111
71.80
-49.65
13
A
ALA
116
-101.01
69.53
13
A
ASP
121
-108.16
-97.62
14
A
LEU
3
-90.48
53.01
14
A
LYS
6
-67.85
89.77
14
A
ASN
68
57.80
-112.10
14
A
SER
69
-83.82
30.85
14
A
MET
78
-168.89
-50.06
14
A
VAL
84
60.22
71.84
14
A
MET
85
75.58
172.75
14
A
VAL
86
88.11
-19.76
14
A
MET
93
-165.59
-161.04
14
A
ARG
103
62.48
71.02
14
A
GLN
112
-174.91
-50.87
14
A
ILE
119
-111.14
57.50
15
A
TRP
5
-74.70
-80.67
15
A
LYS
6
55.35
-128.99
15
A
ILE
15
-89.77
-94.96
15
A
ASP
25
71.58
-33.56
15
A
SER
37
-121.90
-77.05
15
A
ALA
40
-84.45
-154.36
15
A
ASP
44
-152.38
48.33
15
A
SER
48
-166.16
113.86
15
A
SER
80
-101.02
-165.30
15
A
VAL
84
-159.04
53.85
15
A
GLU
96
-101.21
-166.86
15
A
ARG
103
-93.94
-145.65
15
A
ASP
114
-149.58
-49.36
15
A
ASN
117
66.84
-76.91
16
A
LYS
6
-65.66
81.57
16
A
CYS
11
-117.20
-88.26
16
A
GLN
39
75.00
-37.39
16
A
ASP
44
-122.15
-62.99
16
A
ILE
45
-81.87
41.08
16
A
SER
48
-160.05
114.40
16
A
MET
93
-108.81
56.90
16
A
ASP
101
-177.98
53.04
16
A
GLU
102
-99.71
-159.47
16
A
ASN
110
-46.30
103.92
16
A
THR
111
75.77
-51.41
16
A
GLN
112
66.24
-74.21
16
A
PHE
113
-58.38
109.54
16
A
ASP
121
-133.66
-43.02
17
A
LEU
3
-132.18
-57.66
17
A
ARG
7
63.46
166.61
17
A
CYS
11
-122.11
-94.23
17
A
LYS
14
-63.82
95.51
17
A
SER
48
-162.40
111.85
17
A
MET
85
-107.33
59.36
17
A
VAL
87
54.42
-113.15
17
A
LEU
92
-93.59
50.52
17
A
GLU
102
-101.10
-157.25
17
A
LEU
104
-88.05
36.41
17
A
ASN
110
-68.84
5.68
17
A
GLN
112
-79.63
-152.81
18
A
LEU
3
-119.58
78.39
18
A
ASP
25
73.07
-15.11
18
A
HIS
29
-81.37
-143.33
18
A
SER
48
-162.78
117.32
18
A
ASN
68
-50.77
106.22
18
A
SER
74
-155.82
-24.56
18
A
MET
78
-157.26
53.60
18
A
PRO
90
-60.90
89.28
18
A
ASP
99
-99.65
-97.25
18
A
GLU
100
-100.29
-102.39
18
A
ASP
101
-174.56
-51.42
18
A
ARG
103
-163.04
23.42
18
A
LEU
104
-79.71
41.69
18
A
ASN
110
175.63
-59.31
18
A
THR
111
-146.68
38.95
19
A
CYS
11
-84.91
-81.93
19
A
MET
85
70.54
-51.39
19
A
PHE
97
75.61
78.23
19
A
GLU
100
-100.23
-119.55
19
A
ASP
101
-177.59
-68.90
19
A
ARG
103
-118.66
-112.07
19
A
ASN
110
0.21
76.22
19
A
ASP
114
-156.09
-145.89
19
A
ASN
117
-128.68
-63.10
20
A
LEU
3
64.57
-77.75
20
A
LYS
6
59.30
-154.06
20
A
CYS
11
-107.35
-101.19
20
A
ASP
44
-156.29
-52.31
20
A
ILE
45
-90.05
50.72
20
A
SER
80
-133.66
-145.18
20
A
GLU
89
60.81
79.06
20
A
ASP
99
-67.93
-78.87
20
A
ASP
101
-149.02
-52.84
20
A
ARG
103
-160.38
23.73
20
A
ASP
114
-137.95
-47.92
20
A
ASN
117
-97.44
-62.25
20
A
ILE
119
-175.86
-37.10
20
A
ASP
120
27.21
-88.52
20
A
ASP
121
72.56
44.34
FLIN4: Fusion of the LIM binding domain of Ldb1 and the N-terminal LIM domain of LMO4
1
N
N
2
N
N
2
N
N
A
HIS
29
A
HIS
29
HELX_P
A
LYS
34
A
LYS
34
1
1
6
A
CYS
58
A
CYS
58
HELX_P
A
GLY
67
A
GLY
67
1
2
10
metalc
2.279
A
CYS
8
A
SG
CYS
8
1_555
A
ZN
123
B
ZN
ZN
1_555
metalc
2.295
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
123
B
ZN
ZN
1_555
metalc
1.985
A
HIS
29
A
ND1
HIS
29
1_555
A
ZN
123
B
ZN
ZN
1_555
metalc
2.310
A
CYS
32
A
SG
CYS
32
1_555
A
ZN
123
B
ZN
ZN
1_555
metalc
2.260
A
CYS
35
A
SG
CYS
35
1_555
A
ZN
124
C
ZN
ZN
1_555
metalc
2.298
A
CYS
38
A
SG
CYS
38
1_555
A
ZN
124
C
ZN
ZN
1_555
metalc
2.281
A
CYS
58
A
SG
CYS
58
1_555
A
ZN
124
C
ZN
ZN
1_555
metalc
3.703
A
ASP
61
A
OD1
ASP
61
1_555
A
ZN
124
C
ZN
ZN
1_555
metalc
2.048
A
ASP
61
A
OD2
ASP
61
1_555
A
ZN
124
C
ZN
ZN
1_555
METAL BINDING PROTEIN
LIM domain, fusion protein, LMO proteins, Ldb1, METAL BINDING PROTEIN
LDB1_MOUSE
UNP
1
P70662
16
86
1M3V
1
71
P70662
A
1
1
71
300
339
1M3V
83
122
P70662
A
1
83
122
1
CYS
engineered mutation
SER
37
1M3V
A
P70662
UNP
52
37
1
CYS
engineered mutation
SER
49
1M3V
A
P70662
UNP
64
49
3
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
26
A
SER
26
A
TRP
28
A
TRP
28
A
LEU
21
A
LEU
21
A
ALA
23
A
ALA
23
A
THR
106
A
THR
106
A
ARG
107
A
ARG
107
A
GLY
46
A
GLY
46
A
THR
47
A
THR
47
A
GLY
82
A
GLY
82
A
ASP
83
A
ASP
83
A
TYR
50
A
TYR
50
A
LYS
52
A
LYS
52
A
MET
55
A
MET
55
A
LEU
57
A
LEU
57
BINDING SITE FOR RESIDUE ZN A 123
A
ZN
123
Software
4
BINDING SITE FOR RESIDUE ZN A 124
A
ZN
124
Software
4
A
CYS
8
A
CYS
8
4
1_555
A
CYS
11
A
CYS
11
4
1_555
A
HIS
29
A
HIS
29
4
1_555
A
CYS
32
A
CYS
32
4
1_555
A
CYS
35
A
CYS
35
4
1_555
A
CYS
38
A
CYS
38
4
1_555
A
CYS
58
A
CYS
58
4
1_555
A
ASP
61
A
ASP
61
4
1_555