0.037175
0.000000
0.009753
0.000000
0.020492
0.000000
0.000000
0.000000
0.022138
0.00000
0.00000
0.00000
Huang, S.S.
Gibney, B.R.
Stayrook, S.E.
Dutton, P.L.
Lewis, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
104.70
90.00
26.900
48.800
46.700
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
Hg 2
200.590
MERCURY (II) ION
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
326
1219
1225
10.1016/S0022-2836(02)01441-9
12589764
X-ray Structure of a Maquette Scaffold
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2000-04-12
BRANDEIS
Si(111)
MAD
M
x-ray
1
0.98245
1.0
1.00191
1.0
1.009757
1.0
X12C
NSLS
0.98245, 1.00191, 1.009757
SYNCHROTRON
NSLS BEAMLINE X12C
Molecular Maquette Scaffold
3806.542
H10H24
4
syn
polymer
200.590
MERCURY (II) ION
2
syn
non-polymer
no
yes
CGGGEIWKLHEEFLKKFEELLKLHEERLKKM(NH2)
CGGGEIWKLHEEFLKKFEELLKLHEERLKKMX
A,B,C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
1.95
36.83
VAPOR DIFFUSION, HANGING DROP
7.0
PEG 2000MME, HEPES, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 300K
300
repository
Initial release
Version format compliance
Version format compliance
1
0
2003-02-18
1
1
2008-04-28
1
2
2011-07-13
RCSB
Y
RCSB
2002-07-01
REL
REL
HG
MERCURY (II) ION
THIS PROTEIN WAS CHEMICALLY SYNTHESIZED BY Solid phase protein synthesis using Fmoc protected amino acids.
sample
HG
1
2
HG
HG
41
A
HG
1
2
HG
HG
41
C
n
1
1
A
GLY
2
n
2
GLY
2
A
GLY
3
n
3
GLY
3
A
GLY
4
n
4
GLY
4
A
GLU
5
n
5
GLU
5
A
ILE
6
n
6
ILE
6
A
TRP
7
n
7
TRP
7
A
LYS
8
n
8
LYS
8
A
LEU
9
n
9
LEU
9
A
HIS
10
n
10
HIS
10
A
GLU
11
n
11
GLU
11
A
GLU
12
n
12
GLU
12
A
PHE
13
n
13
PHE
13
A
LEU
14
n
14
LEU
14
A
LYS
15
n
15
LYS
15
A
LYS
16
n
16
LYS
16
A
PHE
17
n
17
PHE
17
A
GLU
18
n
18
GLU
18
A
GLU
19
n
19
GLU
19
A
LEU
20
n
20
LEU
20
A
LEU
21
n
21
LEU
21
A
LYS
22
n
22
LYS
22
A
LEU
23
n
23
LEU
23
A
HIS
24
n
24
HIS
24
A
GLU
25
n
25
GLU
25
A
GLU
26
n
26
GLU
26
A
ARG
27
n
27
ARG
27
A
LEU
28
n
28
LEU
28
A
LYS
29
n
29
LYS
29
A
LYS
30
n
30
LYS
30
A
MET
31
n
31
MET
31
A
NHH
32
n
32
NH2
32
A
n
1
1
B
GLY
2
n
2
GLY
2
B
GLY
3
n
3
GLY
3
B
GLY
4
n
4
GLY
4
B
GLU
5
n
5
GLU
5
B
ILE
6
n
6
ILE
6
B
TRP
7
n
7
TRP
7
B
LYS
8
n
8
LYS
8
B
LEU
9
n
9
LEU
9
B
HIS
10
n
10
HIS
10
B
GLU
11
n
11
GLU
11
B
GLU
12
n
12
GLU
12
B
PHE
13
n
13
PHE
13
B
LEU
14
n
14
LEU
14
B
LYS
15
n
15
LYS
15
B
LYS
16
n
16
LYS
16
B
PHE
17
n
17
PHE
17
B
GLU
18
n
18
GLU
18
B
GLU
19
n
19
GLU
19
B
LEU
20
n
20
LEU
20
B
LEU
21
n
21
LEU
21
B
LYS
22
n
22
LYS
22
B
LEU
23
n
23
LEU
23
B
HIS
24
n
24
HIS
24
B
GLU
25
n
25
GLU
25
B
GLU
26
n
26
GLU
26
B
ARG
27
n
27
ARG
27
B
LEU
28
n
28
LEU
28
B
LYS
29
n
29
LYS
29
B
LYS
30
n
30
LYS
30
B
MET
31
n
31
MET
31
B
NHH
32
n
32
NH2
32
B
n
1
1
C
GLY
2
n
2
GLY
2
C
GLY
3
n
3
GLY
3
C
GLY
4
n
4
GLY
4
C
GLU
5
n
5
GLU
5
C
ILE
6
n
6
ILE
6
C
TRP
7
n
7
TRP
7
C
LYS
8
n
8
LYS
8
C
LEU
9
n
9
LEU
9
C
HIS
10
n
10
HIS
10
C
GLU
11
n
11
GLU
11
C
GLU
12
n
12
GLU
12
C
PHE
13
n
13
PHE
13
C
LEU
14
n
14
LEU
14
C
LYS
15
n
15
LYS
15
C
LYS
16
n
16
LYS
16
C
PHE
17
n
17
PHE
17
C
GLU
18
n
18
GLU
18
C
GLU
19
n
19
GLU
19
C
LEU
20
n
20
LEU
20
C
LEU
21
n
21
LEU
21
C
LYS
22
n
22
LYS
22
C
LEU
23
n
23
LEU
23
C
HIS
24
n
24
HIS
24
C
GLU
25
n
25
GLU
25
C
GLU
26
n
26
GLU
26
C
ARG
27
n
27
ARG
27
C
LEU
28
n
28
LEU
28
C
LYS
29
n
29
LYS
29
C
LYS
30
n
30
LYS
30
C
MET
31
n
31
MET
31
C
NHH
32
n
32
NH2
32
C
n
1
1
D
GLY
2
n
2
GLY
2
D
GLY
3
n
3
GLY
3
D
GLY
4
n
4
GLY
4
D
GLU
5
n
5
GLU
5
D
ILE
6
n
6
ILE
6
D
TRP
7
n
7
TRP
7
D
LYS
8
n
8
LYS
8
D
LEU
9
n
9
LEU
9
D
HIS
10
n
10
HIS
10
D
GLU
11
n
11
GLU
11
D
GLU
12
n
12
GLU
12
D
PHE
13
n
13
PHE
13
D
LEU
14
n
14
LEU
14
D
LYS
15
n
15
LYS
15
D
LYS
16
n
16
LYS
16
D
PHE
17
n
17
PHE
17
D
GLU
18
n
18
GLU
18
D
GLU
19
n
19
GLU
19
D
LEU
20
n
20
LEU
20
D
LEU
21
n
21
LEU
21
D
LYS
22
n
22
LYS
22
D
LEU
23
n
23
LEU
23
D
HIS
24
n
24
HIS
24
D
GLU
25
n
25
GLU
25
D
GLU
26
n
26
GLU
26
D
ARG
27
n
27
ARG
27
D
LEU
28
n
28
LEU
28
D
LYS
29
n
29
LYS
29
D
LYS
30
n
30
LYS
30
D
MET
31
n
31
MET
31
D
NHH
32
n
32
NH2
32
D
author_and_software_defined_assembly
PISA
4
tetrameric
6320
-119
7590
A
HIS
24
A
ND1
HIS
24
1_555
A
HG
41
E
HG
HG
1_555
B
HIS
24
B
NE2
HIS
24
1_555
66.9
C
HIS
24
C
ND1
HIS
24
1_555
C
HG
41
F
HG
HG
1_555
D
HIS
24
D
NE2
HIS
24
1_555
71.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CYS
1
A
CYS
1
1
Y
1
B
CYS
1
B
CYS
1
1
Y
1
C
CYS
1
C
CYS
1
1
Y
1
D
CYS
1
D
CYS
1
1
Y
1
-19.97
3.00
112.40
92.43
C
C
C
CB
CG
SD
MET
MET
MET
31
31
31
N
1
A
LYS
30
-55.14
-5.86
1
C
LYS
30
-55.29
-6.70
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA_REP.PARAM
DNA-RNA.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
CAPPING.PARAM
CAPPING.TOP
39.5
8.86
0.00
8.61
-5.83
0.00
-3.03
bulk solvent correction by CNS1.1, density level 0.44 e/A^3, B-factor 36.7456 A^2
0.278
0.024
0.234
0.2357
0.234
2.80
9.99
135
2822
2820
4.8
98.0
RANDOM
618561.91
0.000000
1
RESTRAINED
THROUGHOUT
2.0
MAD
FLAT MODEL
36.8175
0.447641
0.41
0.35
5.00
0.41
0.36
2.80
9.99
0
1046
2
0
1044
0.011
1.3
15.4
0.75
4.78
1.50
5.85
2.00
4.69
2.00
5.15
2.50
0.338
0.082
0.285
2.97
17
430
6
3.8
93.1
90.3
2.73
20.0
1M3W
4649
3188
2
1
0.047
1
23.3
2.9
86.4
2.73
2.83
12
324
0.105
2.8
96.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
SOLVE
refinement
CNS
1.0
H10H24
Crystal Structure of a Molecular Maquette Scaffold
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
A
GLY
2
A
GLY
2
HELX_P
A
LYS
30
A
LYS
30
1
1
29
B
GLY
3
B
GLY
3
HELX_P
B
MET
31
B
MET
31
1
2
29
C
GLY
2
C
GLY
2
HELX_P
C
LYS
30
C
LYS
30
1
3
29
D
GLY
3
D
GLY
3
HELX_P
D
MET
31
D
MET
31
1
4
29
covale
1.337
A
MET
31
A
C
MET
31
1_555
A
NH2
32
A
N
NH2
32
1_555
covale
1.322
B
MET
31
B
C
MET
31
1_555
B
NH2
32
B
N
NH2
32
1_555
covale
1.330
C
MET
31
C
C
MET
31
1_555
C
NH2
32
C
N
NH2
32
1_555
covale
1.318
D
MET
31
D
C
MET
31
1_555
D
NH2
32
D
N
NH2
32
1_555
metalc
2.623
A
HG
41
E
HG
HG
1_555
A
HIS
24
A
ND1
HIS
24
1_555
metalc
2.985
A
HG
41
E
HG
HG
1_555
B
HIS
24
B
NE2
HIS
24
1_555
metalc
2.491
C
HG
41
F
HG
HG
1_555
C
HIS
24
C
ND1
HIS
24
1_555
metalc
2.806
C
HG
41
F
HG
HG
1_555
D
HIS
24
D
NE2
HIS
24
1_555
DE NOVO PROTEIN
four-helix bundle, heme binding, maquette, heme binding protein, electron transport, DE NOVO PROTEIN
1M3W
PDB
1
1M3W
1
32
1M3W
1
32
1M3W
A
1
1
32
1
32
1M3W
1
32
1M3W
B
1
1
32
1
32
1M3W
1
32
1M3W
C
1
1
32
1
32
1M3W
1
32
1M3W
D
1
1
32
BINDING SITE FOR RESIDUE HG C 41
Software
2
BINDING SITE FOR RESIDUE HG A 41
Software
2
C
HIS
24
C
HIS
24
2
1_555
D
HIS
24
D
HIS
24
2
1_555
A
HIS
24
A
HIS
24
2
1_555
B
HIS
24
B
HIS
24
2
1_555
4
P 1 21 1