1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Hsu, C.-H.
Liao, Y.-D.
Wu, S.-H.
Chen, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
J.Biomol.Nmr
JBNME9
0800
0925-2738
19
87
88
10.1023/A:1008348302036
11246862
1H, 15N and 13C resonance assignments and secondary structure determination of the RC-RNase 2 from oocytes of bullfrog Rana catesbeiana.
2001
10.2210/pdb1m58/pdb
pdb_00001m58
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
12367.469
RC-RNase2 ribonuclease
M1Q
1
man
polymer
no
no
MQNWETFQKKHLTDTRDVKCDAEMKKALFDCKQKNTFIYARPGRVQALCKNIIVSKNVLSTDEFYLSDCNRIKLPCHYKL
KKSSNTICITCENKLPVHFVAVEECP
MQNWETFQKKHLTDTRDVKCDAEMKKALFDCKQKNTFIYARPGRVQALCKNIIVSKNVLSTDEFYLSDCNRIKLPCHYKL
KKSSNTICITCENKLPVHFVAVEECP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
bullfrog
Rana
Escherichia
Escherichia coli
sample
8400
Rana catesbeiana
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
plasmid
PET-11d
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Database references
1
0
2003-01-09
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
1
4
2022-12-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
RCSB
Y
PDBJ
2002-07-09
REL
This structure was determined using standard 3D heteronuclear techniques.
structures with the lowest energy
600
15
3D_13C-separated_NOESY
3D_15N-separated_NOESY
HNHA
3.5
1
atm
310
K
3.5
1
atm
310
K
simulated annealing
1
closest to the average
1.5 mM rRC-RNase2 U-15N,13C; 50mM phosphate buffer
90% H2O/10% D2O
1.5 mM rRC-RNase2 U-15N; 50mM phosphate buffer
90% H2O/10% D2O
Bruker
processing
XwinNMR
2.6
Bruker
data analysis
AURELIA
2.6
MSI
structure solution
X-PLOR
98
MSI
refinement
X-PLOR
98
600
Bruker
AVANCE
500
Bruker
AMX
MET
1
n
1
MET
1
A
GLN
2
n
2
GLN
2
A
ASN
3
n
3
ASN
3
A
TRP
4
n
4
TRP
4
A
GLU
5
n
5
GLU
5
A
THR
6
n
6
THR
6
A
PHE
7
n
7
PHE
7
A
GLN
8
n
8
GLN
8
A
LYS
9
n
9
LYS
9
A
LYS
10
n
10
LYS
10
A
HIS
11
n
11
HIS
11
A
LEU
12
n
12
LEU
12
A
THR
13
n
13
THR
13
A
ASP
14
n
14
ASP
14
A
THR
15
n
15
THR
15
A
ARG
16
n
16
ARG
16
A
ASP
17
n
17
ASP
17
A
VAL
18
n
18
VAL
18
A
LYS
19
n
19
LYS
19
A
CYS
20
n
20
CYS
20
A
ASP
21
n
21
ASP
21
A
ALA
22
n
22
ALA
22
A
GLU
23
n
23
GLU
23
A
MET
24
n
24
MET
24
A
LYS
25
n
25
LYS
25
A
LYS
26
n
26
LYS
26
A
ALA
27
n
27
ALA
27
A
LEU
28
n
28
LEU
28
A
PHE
29
n
29
PHE
29
A
ASP
30
n
30
ASP
30
A
CYS
31
n
31
CYS
31
A
LYS
32
n
32
LYS
32
A
GLN
33
n
33
GLN
33
A
LYS
34
n
34
LYS
34
A
ASN
35
n
35
ASN
35
A
THR
36
n
36
THR
36
A
PHE
37
n
37
PHE
37
A
ILE
38
n
38
ILE
38
A
TYR
39
n
39
TYR
39
A
ALA
40
n
40
ALA
40
A
ARG
41
n
41
ARG
41
A
PRO
42
n
42
PRO
42
A
GLY
43
n
43
GLY
43
A
ARG
44
n
44
ARG
44
A
VAL
45
n
45
VAL
45
A
GLN
46
n
46
GLN
46
A
ALA
47
n
47
ALA
47
A
LEU
48
n
48
LEU
48
A
CYS
49
n
49
CYS
49
A
LYS
50
n
50
LYS
50
A
ASN
51
n
51
ASN
51
A
ILE
52
n
52
ILE
52
A
ILE
53
n
53
ILE
53
A
VAL
54
n
54
VAL
54
A
SER
55
n
55
SER
55
A
LYS
56
n
56
LYS
56
A
ASN
57
n
57
ASN
57
A
VAL
58
n
58
VAL
58
A
LEU
59
n
59
LEU
59
A
SER
60
n
60
SER
60
A
THR
61
n
61
THR
61
A
ASP
62
n
62
ASP
62
A
GLU
63
n
63
GLU
63
A
PHE
64
n
64
PHE
64
A
TYR
65
n
65
TYR
65
A
LEU
66
n
66
LEU
66
A
SER
67
n
67
SER
67
A
ASP
68
n
68
ASP
68
A
CYS
69
n
69
CYS
69
A
ASN
70
n
70
ASN
70
A
ARG
71
n
71
ARG
71
A
ILE
72
n
72
ILE
72
A
LYS
73
n
73
LYS
73
A
LEU
74
n
74
LEU
74
A
PRO
75
n
75
PRO
75
A
CYS
76
n
76
CYS
76
A
HIS
77
n
77
HIS
77
A
TYR
78
n
78
TYR
78
A
LYS
79
n
79
LYS
79
A
LEU
80
n
80
LEU
80
A
LYS
81
n
81
LYS
81
A
LYS
82
n
82
LYS
82
A
SER
83
n
83
SER
83
A
SER
84
n
84
SER
84
A
ASN
85
n
85
ASN
85
A
THR
86
n
86
THR
86
A
ILE
87
n
87
ILE
87
A
CYS
88
n
88
CYS
88
A
ILE
89
n
89
ILE
89
A
THR
90
n
90
THR
90
A
CYS
91
n
91
CYS
91
A
GLU
92
n
92
GLU
92
A
ASN
93
n
93
ASN
93
A
LYS
94
n
94
LYS
94
A
LEU
95
n
95
LEU
95
A
PRO
96
n
96
PRO
96
A
VAL
97
n
97
VAL
97
A
HIS
98
n
98
HIS
98
A
PHE
99
n
99
PHE
99
A
VAL
100
n
100
VAL
100
A
ALA
101
n
101
ALA
101
A
VAL
102
n
102
VAL
102
A
GLU
103
n
103
GLU
103
A
GLU
104
n
104
GLU
104
A
CYS
105
n
105
CYS
105
A
PRO
106
n
106
PRO
106
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
13
A
N
THR
13
A
O
ILE
38
A
O
ILE
38
A
N
ASN
35
A
N
ASN
35
A
O
CYS
69
A
O
CYS
69
A
N
ASP
68
A
N
ASP
68
A
O
LYS
81
A
O
LYS
81
A
N
VAL
58
A
N
VAL
58
A
O
ILE
89
A
O
ILE
89
A
N
CYS
88
A
N
CYS
88
A
O
ALA
101
A
O
ALA
101
1
A
ARG
16
0.248
SIDE CHAIN
1
A
ARG
41
0.251
SIDE CHAIN
1
A
ARG
44
0.317
SIDE CHAIN
1
A
ARG
71
0.317
SIDE CHAIN
2
A
ARG
16
0.317
SIDE CHAIN
2
A
ARG
41
0.274
SIDE CHAIN
2
A
ARG
44
0.314
SIDE CHAIN
2
A
ARG
71
0.194
SIDE CHAIN
3
A
ARG
16
0.255
SIDE CHAIN
3
A
ARG
41
0.317
SIDE CHAIN
3
A
ARG
44
0.318
SIDE CHAIN
3
A
ARG
71
0.201
SIDE CHAIN
4
A
ARG
16
0.212
SIDE CHAIN
4
A
ARG
41
0.297
SIDE CHAIN
4
A
ARG
44
0.285
SIDE CHAIN
4
A
ARG
71
0.311
SIDE CHAIN
5
A
ARG
16
0.236
SIDE CHAIN
5
A
ARG
41
0.311
SIDE CHAIN
5
A
ARG
44
0.299
SIDE CHAIN
5
A
ARG
71
0.176
SIDE CHAIN
6
A
ARG
16
0.203
SIDE CHAIN
6
A
ARG
41
0.266
SIDE CHAIN
6
A
ARG
44
0.282
SIDE CHAIN
6
A
ARG
71
0.318
SIDE CHAIN
7
A
ARG
16
0.313
SIDE CHAIN
7
A
ARG
41
0.231
SIDE CHAIN
7
A
ARG
44
0.216
SIDE CHAIN
7
A
ARG
71
0.307
SIDE CHAIN
8
A
ARG
16
0.264
SIDE CHAIN
8
A
ARG
41
0.197
SIDE CHAIN
8
A
ARG
44
0.286
SIDE CHAIN
8
A
ARG
71
0.234
SIDE CHAIN
9
A
ARG
16
0.288
SIDE CHAIN
9
A
ARG
41
0.308
SIDE CHAIN
9
A
ARG
44
0.225
SIDE CHAIN
9
A
ARG
71
0.218
SIDE CHAIN
10
A
ARG
16
0.227
SIDE CHAIN
10
A
ARG
41
0.304
SIDE CHAIN
10
A
ARG
44
0.234
SIDE CHAIN
10
A
ARG
71
0.299
SIDE CHAIN
11
A
ARG
16
0.309
SIDE CHAIN
11
A
ARG
41
0.316
SIDE CHAIN
11
A
ARG
44
0.220
SIDE CHAIN
11
A
ARG
71
0.292
SIDE CHAIN
12
A
ARG
16
0.192
SIDE CHAIN
12
A
ARG
41
0.311
SIDE CHAIN
12
A
ARG
44
0.311
SIDE CHAIN
12
A
ARG
71
0.316
SIDE CHAIN
13
A
ARG
16
0.288
SIDE CHAIN
13
A
ARG
41
0.230
SIDE CHAIN
13
A
ARG
44
0.311
SIDE CHAIN
13
A
ARG
71
0.294
SIDE CHAIN
14
A
ARG
16
0.305
SIDE CHAIN
14
A
ARG
41
0.291
SIDE CHAIN
14
A
ARG
44
0.299
SIDE CHAIN
14
A
ARG
71
0.269
SIDE CHAIN
15
A
ARG
16
0.290
SIDE CHAIN
15
A
ARG
41
0.290
SIDE CHAIN
15
A
ARG
44
0.257
SIDE CHAIN
15
A
ARG
71
0.294
SIDE CHAIN
1
A
GLN
2
-131.98
-41.43
1
A
ASP
17
-98.77
50.58
1
A
ASP
30
74.07
49.29
1
A
LYS
50
-100.51
42.00
1
A
LYS
73
-171.80
99.90
1
A
LEU
74
-43.86
161.88
1
A
PRO
75
-79.02
-76.48
1
A
VAL
97
-140.38
-17.86
1
A
ALA
101
-167.33
-157.33
1
A
VAL
102
-109.19
-139.46
2
A
ASN
3
-129.83
-167.83
2
A
ASP
17
-99.36
37.03
2
A
ALA
27
55.40
16.89
2
A
LYS
32
-67.17
-173.45
2
A
LYS
50
-97.77
44.92
2
A
ASN
51
-141.53
-45.10
2
A
LYS
73
177.75
107.53
2
A
LEU
74
-49.25
169.26
2
A
GLU
92
-173.56
131.07
2
A
LYS
94
83.43
-7.96
2
A
ALA
101
-163.90
-163.76
2
A
VAL
102
-90.23
-152.19
3
A
ASP
17
-91.96
50.49
3
A
LYS
32
-55.67
-174.33
3
A
ASN
51
-132.44
-38.04
3
A
GLU
92
-172.85
132.41
3
A
LYS
94
59.60
17.53
3
A
ALA
101
-169.25
-163.56
3
A
VAL
102
-108.40
-141.39
4
A
VAL
18
-47.76
154.13
4
A
ASP
30
70.17
48.19
4
A
LYS
32
-66.52
-179.93
4
A
ASN
51
-142.27
26.52
4
A
LYS
73
-173.24
117.58
4
A
LEU
74
-48.28
169.35
4
A
ALA
101
-166.58
-163.14
4
A
VAL
102
-101.09
-147.25
5
A
ASP
17
-97.27
40.82
5
A
GLN
33
-58.46
-70.20
5
A
ALA
40
179.51
176.74
5
A
LYS
50
-107.08
42.55
5
A
ILE
72
-137.44
-47.82
5
A
LEU
74
-48.18
167.93
5
A
GLU
92
-173.06
135.10
5
A
VAL
97
-150.14
17.73
5
A
ALA
101
-169.37
-164.15
5
A
VAL
102
-92.37
-152.19
6
A
GLN
2
-145.82
-65.49
6
A
ASP
17
-95.64
46.42
6
A
LYS
32
-60.00
-172.10
6
A
LYS
50
-98.28
37.94
6
A
LYS
73
-175.10
107.11
6
A
LEU
74
-49.99
165.32
6
A
PRO
75
-83.61
-76.36
6
A
VAL
97
-145.32
11.14
6
A
ALA
101
-167.64
-162.82
6
A
VAL
102
-107.21
-135.44
7
A
ARG
16
-138.57
-44.63
7
A
ASP
17
-98.29
39.56
7
A
LYS
50
-100.93
40.69
7
A
ARG
71
-62.00
92.46
7
A
LYS
73
-174.96
116.95
7
A
PRO
75
-79.88
-70.15
7
A
VAL
97
-148.16
17.32
7
A
VAL
102
-94.77
-150.04
8
A
HIS
11
-100.09
-66.47
8
A
GLN
33
-43.94
-74.08
8
A
LYS
73
-163.65
110.64
8
A
LEU
74
-45.96
166.46
8
A
VAL
97
-141.98
-21.49
8
A
ALA
101
-163.98
-162.44
8
A
VAL
102
-105.30
-143.83
9
A
HIS
11
-96.79
-62.13
9
A
ASP
17
-97.18
44.09
9
A
LYS
32
-64.33
-173.22
9
A
LYS
73
-176.73
109.49
9
A
LEU
74
-56.06
170.68
9
A
GLU
92
-160.26
117.75
9
A
VAL
100
-83.23
-71.28
9
A
VAL
102
-89.14
-153.34
10
A
GLN
33
-56.93
-77.04
10
A
VAL
54
-61.85
-178.07
10
A
ILE
72
-142.71
-55.99
10
A
LYS
73
-171.47
117.22
10
A
LEU
74
-46.78
167.92
10
A
VAL
102
-104.10
-139.73
11
A
ASP
17
-97.94
34.57
11
A
ALA
40
179.38
169.27
11
A
LYS
50
-101.89
43.06
11
A
VAL
54
-64.66
-178.60
11
A
ARG
71
-68.96
98.93
11
A
LYS
73
-163.80
101.36
11
A
GLU
92
-177.96
131.57
11
A
VAL
97
-143.78
11.31
11
A
ALA
101
-168.16
-164.32
11
A
VAL
102
-94.30
-155.02
12
A
LYS
50
-95.35
46.32
12
A
GLU
92
-166.72
114.00
12
A
LYS
94
45.23
24.42
12
A
VAL
100
-91.16
-63.86
12
A
ALA
101
-164.85
-163.82
12
A
VAL
102
-105.10
-142.70
13
A
ASN
3
-122.11
-164.60
13
A
ASP
17
-95.17
49.29
13
A
ASP
30
70.17
41.76
13
A
LYS
50
-97.30
48.87
13
A
ASN
51
-130.15
-38.93
13
A
LYS
73
-173.48
104.22
13
A
ALA
101
-161.20
-161.68
13
A
VAL
102
-103.80
-142.06
14
A
ASP
17
-100.49
45.08
14
A
CYS
20
-62.96
-70.66
14
A
LYS
50
-97.22
39.98
14
A
LEU
74
-50.27
171.96
14
A
GLU
92
-177.66
125.25
14
A
VAL
97
-145.96
17.49
14
A
VAL
102
-96.91
-148.91
15
A
PHE
29
-132.72
-41.73
15
A
ASP
30
73.92
54.07
15
A
LYS
50
-108.80
43.88
15
A
LYS
73
-165.55
108.59
15
A
LEU
74
-47.66
167.57
15
A
PRO
75
-85.10
-71.76
15
A
GLU
92
-164.07
118.66
15
A
LYS
94
59.28
14.58
15
A
VAL
97
-145.04
13.97
15
A
VAL
102
-118.29
-82.85
Solution Structure of Cytotoxic RC-RNase2
1
N
N
A
ASN
3
A
ASN
3
HELX_P
A
HIS
11
A
HIS
11
1
1
9
A
LYS
19
A
LYS
19
HELX_P
A
LYS
25
A
LYS
25
1
2
7
A
ARG
41
A
ARG
41
HELX_P
A
ALA
47
A
ALA
47
1
3
7
disulf
2.021
A
CYS
20
A
SG
CYS
20
1_555
A
CYS
69
A
SG
CYS
69
1_555
disulf
2.021
A
CYS
31
A
SG
CYS
31
1_555
A
CYS
76
A
SG
CYS
76
1_555
disulf
2.018
A
CYS
49
A
SG
CYS
49
1_555
A
CYS
91
A
SG
CYS
91
1_555
disulf
2.022
A
CYS
88
A
SG
CYS
88
1_555
A
CYS
105
A
SG
CYS
105
1_555
HYDROLASE
bullfrog, cytotoxicity, ribonuclease, HYDROLASE
A
LEU
74
A
LEU
74
1
A
PRO
75
A
PRO
75
0.61
A
LEU
74
A
LEU
74
2
A
PRO
75
A
PRO
75
-0.49
A
LEU
74
A
LEU
74
3
A
PRO
75
A
PRO
75
-1.53
A
LEU
74
A
LEU
74
4
A
PRO
75
A
PRO
75
0.13
A
LEU
74
A
LEU
74
5
A
PRO
75
A
PRO
75
-0.15
A
LEU
74
A
LEU
74
6
A
PRO
75
A
PRO
75
-0.49
A
LEU
74
A
LEU
74
7
A
PRO
75
A
PRO
75
-0.09
A
LEU
74
A
LEU
74
8
A
PRO
75
A
PRO
75
-0.57
A
LEU
74
A
LEU
74
9
A
PRO
75
A
PRO
75
-0.17
A
LEU
74
A
LEU
74
10
A
PRO
75
A
PRO
75
0.41
A
LEU
74
A
LEU
74
11
A
PRO
75
A
PRO
75
-0.28
A
LEU
74
A
LEU
74
12
A
PRO
75
A
PRO
75
-0.65
A
LEU
74
A
LEU
74
13
A
PRO
75
A
PRO
75
0.32
A
LEU
74
A
LEU
74
14
A
PRO
75
A
PRO
75
-0.47
A
LEU
74
A
LEU
74
15
A
PRO
75
A
PRO
75
-1.19
Q9DFY8_RANCA
UNP
1
24
Q9DFY8
QNWETFQKKHLTDTRDVKCDAEMKKALFDCKQKNTFIYARPGRVQALCKNIIVSKNVLSTDEFYLSDCNRIKLPCHYKLK
KSSNTICITCENKLPVHFVAVEECP
24
128
1M58
2
106
Q9DFY8
A
1
2
106
1
initiating methionine
MET
1
1M58
A
Q9DFY8
UNP
1
4
3
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
12
A
LEU
12
A
THR
13
A
THR
13
A
ASN
35
A
ASN
35
A
TYR
39
A
TYR
39
A
PHE
64
A
PHE
64
A
LYS
73
A
LYS
73
A
HIS
77
A
HIS
77
A
ASN
85
A
ASN
85
A
LYS
56
A
LYS
56
A
LEU
59
A
LEU
59
A
CYS
88
A
CYS
88
A
GLU
92
A
GLU
92
A
LEU
95
A
LEU
95
A
ALA
101
A
ALA
101