1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Hsu, C.-H. Liao, Y.-D. Wu, S.-H. Chen, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking NE J.Biomol.Nmr JBNME9 0800 0925-2738 19 87 88 10.1023/A:1008348302036 11246862 1H, 15N and 13C resonance assignments and secondary structure determination of the RC-RNase 2 from oocytes of bullfrog Rana catesbeiana. 2001 10.2210/pdb1m58/pdb pdb_00001m58 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 12367.469 RC-RNase2 ribonuclease M1Q 1 man polymer no no MQNWETFQKKHLTDTRDVKCDAEMKKALFDCKQKNTFIYARPGRVQALCKNIIVSKNVLSTDEFYLSDCNRIKLPCHYKL KKSSNTICITCENKLPVHFVAVEECP MQNWETFQKKHLTDTRDVKCDAEMKKALFDCKQKNTFIYARPGRVQALCKNIIVSKNVLSTDEFYLSDCNRIKLPCHYKL KKSSNTICITCENKLPVHFVAVEECP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n bullfrog Rana Escherichia Escherichia coli sample 8400 Rana catesbeiana 469008 Escherichia coli BL21(DE3) BL21 (DE3) plasmid PET-11d database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Database references 1 0 2003-01-09 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 1 4 2022-12-21 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details RCSB Y PDBJ 2002-07-09 REL This structure was determined using standard 3D heteronuclear techniques. structures with the lowest energy 600 15 3D_13C-separated_NOESY 3D_15N-separated_NOESY HNHA 3.5 1 atm 310 K 3.5 1 atm 310 K simulated annealing 1 closest to the average 1.5 mM rRC-RNase2 U-15N,13C; 50mM phosphate buffer 90% H2O/10% D2O 1.5 mM rRC-RNase2 U-15N; 50mM phosphate buffer 90% H2O/10% D2O Bruker processing XwinNMR 2.6 Bruker data analysis AURELIA 2.6 MSI structure solution X-PLOR 98 MSI refinement X-PLOR 98 600 Bruker AVANCE 500 Bruker AMX MET 1 n 1 MET 1 A GLN 2 n 2 GLN 2 A ASN 3 n 3 ASN 3 A TRP 4 n 4 TRP 4 A GLU 5 n 5 GLU 5 A THR 6 n 6 THR 6 A PHE 7 n 7 PHE 7 A GLN 8 n 8 GLN 8 A LYS 9 n 9 LYS 9 A LYS 10 n 10 LYS 10 A HIS 11 n 11 HIS 11 A LEU 12 n 12 LEU 12 A THR 13 n 13 THR 13 A ASP 14 n 14 ASP 14 A THR 15 n 15 THR 15 A ARG 16 n 16 ARG 16 A ASP 17 n 17 ASP 17 A VAL 18 n 18 VAL 18 A LYS 19 n 19 LYS 19 A CYS 20 n 20 CYS 20 A ASP 21 n 21 ASP 21 A ALA 22 n 22 ALA 22 A GLU 23 n 23 GLU 23 A MET 24 n 24 MET 24 A LYS 25 n 25 LYS 25 A LYS 26 n 26 LYS 26 A ALA 27 n 27 ALA 27 A LEU 28 n 28 LEU 28 A PHE 29 n 29 PHE 29 A ASP 30 n 30 ASP 30 A CYS 31 n 31 CYS 31 A LYS 32 n 32 LYS 32 A GLN 33 n 33 GLN 33 A LYS 34 n 34 LYS 34 A ASN 35 n 35 ASN 35 A THR 36 n 36 THR 36 A PHE 37 n 37 PHE 37 A ILE 38 n 38 ILE 38 A TYR 39 n 39 TYR 39 A ALA 40 n 40 ALA 40 A ARG 41 n 41 ARG 41 A PRO 42 n 42 PRO 42 A GLY 43 n 43 GLY 43 A ARG 44 n 44 ARG 44 A VAL 45 n 45 VAL 45 A GLN 46 n 46 GLN 46 A ALA 47 n 47 ALA 47 A LEU 48 n 48 LEU 48 A CYS 49 n 49 CYS 49 A LYS 50 n 50 LYS 50 A ASN 51 n 51 ASN 51 A ILE 52 n 52 ILE 52 A ILE 53 n 53 ILE 53 A VAL 54 n 54 VAL 54 A SER 55 n 55 SER 55 A LYS 56 n 56 LYS 56 A ASN 57 n 57 ASN 57 A VAL 58 n 58 VAL 58 A LEU 59 n 59 LEU 59 A SER 60 n 60 SER 60 A THR 61 n 61 THR 61 A ASP 62 n 62 ASP 62 A GLU 63 n 63 GLU 63 A PHE 64 n 64 PHE 64 A TYR 65 n 65 TYR 65 A LEU 66 n 66 LEU 66 A SER 67 n 67 SER 67 A ASP 68 n 68 ASP 68 A CYS 69 n 69 CYS 69 A ASN 70 n 70 ASN 70 A ARG 71 n 71 ARG 71 A ILE 72 n 72 ILE 72 A LYS 73 n 73 LYS 73 A LEU 74 n 74 LEU 74 A PRO 75 n 75 PRO 75 A CYS 76 n 76 CYS 76 A HIS 77 n 77 HIS 77 A TYR 78 n 78 TYR 78 A LYS 79 n 79 LYS 79 A LEU 80 n 80 LEU 80 A LYS 81 n 81 LYS 81 A LYS 82 n 82 LYS 82 A SER 83 n 83 SER 83 A SER 84 n 84 SER 84 A ASN 85 n 85 ASN 85 A THR 86 n 86 THR 86 A ILE 87 n 87 ILE 87 A CYS 88 n 88 CYS 88 A ILE 89 n 89 ILE 89 A THR 90 n 90 THR 90 A CYS 91 n 91 CYS 91 A GLU 92 n 92 GLU 92 A ASN 93 n 93 ASN 93 A LYS 94 n 94 LYS 94 A LEU 95 n 95 LEU 95 A PRO 96 n 96 PRO 96 A VAL 97 n 97 VAL 97 A HIS 98 n 98 HIS 98 A PHE 99 n 99 PHE 99 A VAL 100 n 100 VAL 100 A ALA 101 n 101 ALA 101 A VAL 102 n 102 VAL 102 A GLU 103 n 103 GLU 103 A GLU 104 n 104 GLU 104 A CYS 105 n 105 CYS 105 A PRO 106 n 106 PRO 106 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 13 A N THR 13 A O ILE 38 A O ILE 38 A N ASN 35 A N ASN 35 A O CYS 69 A O CYS 69 A N ASP 68 A N ASP 68 A O LYS 81 A O LYS 81 A N VAL 58 A N VAL 58 A O ILE 89 A O ILE 89 A N CYS 88 A N CYS 88 A O ALA 101 A O ALA 101 1 A ARG 16 0.248 SIDE CHAIN 1 A ARG 41 0.251 SIDE CHAIN 1 A ARG 44 0.317 SIDE CHAIN 1 A ARG 71 0.317 SIDE CHAIN 2 A ARG 16 0.317 SIDE CHAIN 2 A ARG 41 0.274 SIDE CHAIN 2 A ARG 44 0.314 SIDE CHAIN 2 A ARG 71 0.194 SIDE CHAIN 3 A ARG 16 0.255 SIDE CHAIN 3 A ARG 41 0.317 SIDE CHAIN 3 A ARG 44 0.318 SIDE CHAIN 3 A ARG 71 0.201 SIDE CHAIN 4 A ARG 16 0.212 SIDE CHAIN 4 A ARG 41 0.297 SIDE CHAIN 4 A ARG 44 0.285 SIDE CHAIN 4 A ARG 71 0.311 SIDE CHAIN 5 A ARG 16 0.236 SIDE CHAIN 5 A ARG 41 0.311 SIDE CHAIN 5 A ARG 44 0.299 SIDE CHAIN 5 A ARG 71 0.176 SIDE CHAIN 6 A ARG 16 0.203 SIDE CHAIN 6 A ARG 41 0.266 SIDE CHAIN 6 A ARG 44 0.282 SIDE CHAIN 6 A ARG 71 0.318 SIDE CHAIN 7 A ARG 16 0.313 SIDE CHAIN 7 A ARG 41 0.231 SIDE CHAIN 7 A ARG 44 0.216 SIDE CHAIN 7 A ARG 71 0.307 SIDE CHAIN 8 A ARG 16 0.264 SIDE CHAIN 8 A ARG 41 0.197 SIDE CHAIN 8 A ARG 44 0.286 SIDE CHAIN 8 A ARG 71 0.234 SIDE CHAIN 9 A ARG 16 0.288 SIDE CHAIN 9 A ARG 41 0.308 SIDE CHAIN 9 A ARG 44 0.225 SIDE CHAIN 9 A ARG 71 0.218 SIDE CHAIN 10 A ARG 16 0.227 SIDE CHAIN 10 A ARG 41 0.304 SIDE CHAIN 10 A ARG 44 0.234 SIDE CHAIN 10 A ARG 71 0.299 SIDE CHAIN 11 A ARG 16 0.309 SIDE CHAIN 11 A ARG 41 0.316 SIDE CHAIN 11 A ARG 44 0.220 SIDE CHAIN 11 A ARG 71 0.292 SIDE CHAIN 12 A ARG 16 0.192 SIDE CHAIN 12 A ARG 41 0.311 SIDE CHAIN 12 A ARG 44 0.311 SIDE CHAIN 12 A ARG 71 0.316 SIDE CHAIN 13 A ARG 16 0.288 SIDE CHAIN 13 A ARG 41 0.230 SIDE CHAIN 13 A ARG 44 0.311 SIDE CHAIN 13 A ARG 71 0.294 SIDE CHAIN 14 A ARG 16 0.305 SIDE CHAIN 14 A ARG 41 0.291 SIDE CHAIN 14 A ARG 44 0.299 SIDE CHAIN 14 A ARG 71 0.269 SIDE CHAIN 15 A ARG 16 0.290 SIDE CHAIN 15 A ARG 41 0.290 SIDE CHAIN 15 A ARG 44 0.257 SIDE CHAIN 15 A ARG 71 0.294 SIDE CHAIN 1 A GLN 2 -131.98 -41.43 1 A ASP 17 -98.77 50.58 1 A ASP 30 74.07 49.29 1 A LYS 50 -100.51 42.00 1 A LYS 73 -171.80 99.90 1 A LEU 74 -43.86 161.88 1 A PRO 75 -79.02 -76.48 1 A VAL 97 -140.38 -17.86 1 A ALA 101 -167.33 -157.33 1 A VAL 102 -109.19 -139.46 2 A ASN 3 -129.83 -167.83 2 A ASP 17 -99.36 37.03 2 A ALA 27 55.40 16.89 2 A LYS 32 -67.17 -173.45 2 A LYS 50 -97.77 44.92 2 A ASN 51 -141.53 -45.10 2 A LYS 73 177.75 107.53 2 A LEU 74 -49.25 169.26 2 A GLU 92 -173.56 131.07 2 A LYS 94 83.43 -7.96 2 A ALA 101 -163.90 -163.76 2 A VAL 102 -90.23 -152.19 3 A ASP 17 -91.96 50.49 3 A LYS 32 -55.67 -174.33 3 A ASN 51 -132.44 -38.04 3 A GLU 92 -172.85 132.41 3 A LYS 94 59.60 17.53 3 A ALA 101 -169.25 -163.56 3 A VAL 102 -108.40 -141.39 4 A VAL 18 -47.76 154.13 4 A ASP 30 70.17 48.19 4 A LYS 32 -66.52 -179.93 4 A ASN 51 -142.27 26.52 4 A LYS 73 -173.24 117.58 4 A LEU 74 -48.28 169.35 4 A ALA 101 -166.58 -163.14 4 A VAL 102 -101.09 -147.25 5 A ASP 17 -97.27 40.82 5 A GLN 33 -58.46 -70.20 5 A ALA 40 179.51 176.74 5 A LYS 50 -107.08 42.55 5 A ILE 72 -137.44 -47.82 5 A LEU 74 -48.18 167.93 5 A GLU 92 -173.06 135.10 5 A VAL 97 -150.14 17.73 5 A ALA 101 -169.37 -164.15 5 A VAL 102 -92.37 -152.19 6 A GLN 2 -145.82 -65.49 6 A ASP 17 -95.64 46.42 6 A LYS 32 -60.00 -172.10 6 A LYS 50 -98.28 37.94 6 A LYS 73 -175.10 107.11 6 A LEU 74 -49.99 165.32 6 A PRO 75 -83.61 -76.36 6 A VAL 97 -145.32 11.14 6 A ALA 101 -167.64 -162.82 6 A VAL 102 -107.21 -135.44 7 A ARG 16 -138.57 -44.63 7 A ASP 17 -98.29 39.56 7 A LYS 50 -100.93 40.69 7 A ARG 71 -62.00 92.46 7 A LYS 73 -174.96 116.95 7 A PRO 75 -79.88 -70.15 7 A VAL 97 -148.16 17.32 7 A VAL 102 -94.77 -150.04 8 A HIS 11 -100.09 -66.47 8 A GLN 33 -43.94 -74.08 8 A LYS 73 -163.65 110.64 8 A LEU 74 -45.96 166.46 8 A VAL 97 -141.98 -21.49 8 A ALA 101 -163.98 -162.44 8 A VAL 102 -105.30 -143.83 9 A HIS 11 -96.79 -62.13 9 A ASP 17 -97.18 44.09 9 A LYS 32 -64.33 -173.22 9 A LYS 73 -176.73 109.49 9 A LEU 74 -56.06 170.68 9 A GLU 92 -160.26 117.75 9 A VAL 100 -83.23 -71.28 9 A VAL 102 -89.14 -153.34 10 A GLN 33 -56.93 -77.04 10 A VAL 54 -61.85 -178.07 10 A ILE 72 -142.71 -55.99 10 A LYS 73 -171.47 117.22 10 A LEU 74 -46.78 167.92 10 A VAL 102 -104.10 -139.73 11 A ASP 17 -97.94 34.57 11 A ALA 40 179.38 169.27 11 A LYS 50 -101.89 43.06 11 A VAL 54 -64.66 -178.60 11 A ARG 71 -68.96 98.93 11 A LYS 73 -163.80 101.36 11 A GLU 92 -177.96 131.57 11 A VAL 97 -143.78 11.31 11 A ALA 101 -168.16 -164.32 11 A VAL 102 -94.30 -155.02 12 A LYS 50 -95.35 46.32 12 A GLU 92 -166.72 114.00 12 A LYS 94 45.23 24.42 12 A VAL 100 -91.16 -63.86 12 A ALA 101 -164.85 -163.82 12 A VAL 102 -105.10 -142.70 13 A ASN 3 -122.11 -164.60 13 A ASP 17 -95.17 49.29 13 A ASP 30 70.17 41.76 13 A LYS 50 -97.30 48.87 13 A ASN 51 -130.15 -38.93 13 A LYS 73 -173.48 104.22 13 A ALA 101 -161.20 -161.68 13 A VAL 102 -103.80 -142.06 14 A ASP 17 -100.49 45.08 14 A CYS 20 -62.96 -70.66 14 A LYS 50 -97.22 39.98 14 A LEU 74 -50.27 171.96 14 A GLU 92 -177.66 125.25 14 A VAL 97 -145.96 17.49 14 A VAL 102 -96.91 -148.91 15 A PHE 29 -132.72 -41.73 15 A ASP 30 73.92 54.07 15 A LYS 50 -108.80 43.88 15 A LYS 73 -165.55 108.59 15 A LEU 74 -47.66 167.57 15 A PRO 75 -85.10 -71.76 15 A GLU 92 -164.07 118.66 15 A LYS 94 59.28 14.58 15 A VAL 97 -145.04 13.97 15 A VAL 102 -118.29 -82.85 Solution Structure of Cytotoxic RC-RNase2 1 N N A ASN 3 A ASN 3 HELX_P A HIS 11 A HIS 11 1 1 9 A LYS 19 A LYS 19 HELX_P A LYS 25 A LYS 25 1 2 7 A ARG 41 A ARG 41 HELX_P A ALA 47 A ALA 47 1 3 7 disulf 2.021 A CYS 20 A SG CYS 20 1_555 A CYS 69 A SG CYS 69 1_555 disulf 2.021 A CYS 31 A SG CYS 31 1_555 A CYS 76 A SG CYS 76 1_555 disulf 2.018 A CYS 49 A SG CYS 49 1_555 A CYS 91 A SG CYS 91 1_555 disulf 2.022 A CYS 88 A SG CYS 88 1_555 A CYS 105 A SG CYS 105 1_555 HYDROLASE bullfrog, cytotoxicity, ribonuclease, HYDROLASE A LEU 74 A LEU 74 1 A PRO 75 A PRO 75 0.61 A LEU 74 A LEU 74 2 A PRO 75 A PRO 75 -0.49 A LEU 74 A LEU 74 3 A PRO 75 A PRO 75 -1.53 A LEU 74 A LEU 74 4 A PRO 75 A PRO 75 0.13 A LEU 74 A LEU 74 5 A PRO 75 A PRO 75 -0.15 A LEU 74 A LEU 74 6 A PRO 75 A PRO 75 -0.49 A LEU 74 A LEU 74 7 A PRO 75 A PRO 75 -0.09 A LEU 74 A LEU 74 8 A PRO 75 A PRO 75 -0.57 A LEU 74 A LEU 74 9 A PRO 75 A PRO 75 -0.17 A LEU 74 A LEU 74 10 A PRO 75 A PRO 75 0.41 A LEU 74 A LEU 74 11 A PRO 75 A PRO 75 -0.28 A LEU 74 A LEU 74 12 A PRO 75 A PRO 75 -0.65 A LEU 74 A LEU 74 13 A PRO 75 A PRO 75 0.32 A LEU 74 A LEU 74 14 A PRO 75 A PRO 75 -0.47 A LEU 74 A LEU 74 15 A PRO 75 A PRO 75 -1.19 Q9DFY8_RANCA UNP 1 24 Q9DFY8 QNWETFQKKHLTDTRDVKCDAEMKKALFDCKQKNTFIYARPGRVQALCKNIIVSKNVLSTDEFYLSDCNRIKLPCHYKLK KSSNTICITCENKLPVHFVAVEECP 24 128 1M58 2 106 Q9DFY8 A 1 2 106 1 initiating methionine MET 1 1M58 A Q9DFY8 UNP 1 4 3 parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 12 A LEU 12 A THR 13 A THR 13 A ASN 35 A ASN 35 A TYR 39 A TYR 39 A PHE 64 A PHE 64 A LYS 73 A LYS 73 A HIS 77 A HIS 77 A ASN 85 A ASN 85 A LYS 56 A LYS 56 A LEU 59 A LEU 59 A CYS 88 A CYS 88 A GLU 92 A GLU 92 A LEU 95 A LEU 95 A ALA 101 A ALA 101