1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Feng, W. Fan, J. Jiang, M. Shi, Y. Zhang, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 277 41140 41146 10.1074/jbc.M207206200 12196542 The PDZ7 of Glutamate Receptor Interacting Protein Binds to its Target via a Novel Hydrophobic Surface Area 2002 10.2210/pdb1m5z/pdb pdb_00001m5z 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 9979.455 AMPA receptor interacting protein The Seventh PDZ Domain of Glutamate Receptor Interacting Protein 1 man polymer GRIP no no SPTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESG NKLDLVISRNP SPTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESG NKLDLVISRNP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Norway rat Rattus Escherichia sample 10116 Rattus norvegicus 562 Escherichia coli plasmid pET32a database_2 pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2002-11-06 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession RCSB Y PDBJ 2002-07-11 REL REL structures with the lowest energy 200 20 2D NOESY 3D_15N-separated_NOESY 3D_13C-separated_NOESY 100mM potassium phosphate buffer 6.5 1 atm 298 K the structures are based on a total of 1826 restraints, 1644 are NOE-derived distance constraints, 126 dihedral angle restraints, 56 distance restraints from hydrogen bonds torsion angle dynamics 11 closest to the average 1.0 mM unlabelled PDZ7 in 99.9% D2O 99.9% D2O 1.0 mM 15N-labelled protein in 90% H2O/10% D2O 90% H2O/10% D2O 1.0 mM 15N/13C-labelled samples in 99.9% D2O 99.9% D2O 1.0 mM 15N/13C-labelled samples in 90% H2O/10% D2O 90% H2O/10% D2O Brunger structure solution CNS 1.1 Brunger refinement CNS 1.1 500 Varian INOVA 750 Varian INOVA SER 16 n 1 SER 16 A PRO 17 n 2 PRO 17 A THR 18 n 3 THR 18 A PRO 19 n 4 PRO 19 A VAL 20 n 5 VAL 20 A GLU 21 n 6 GLU 21 A LEU 22 n 7 LEU 22 A HIS 23 n 8 HIS 23 A LYS 24 n 9 LYS 24 A VAL 25 n 10 VAL 25 A THR 26 n 11 THR 26 A LEU 27 n 12 LEU 27 A TYR 28 n 13 TYR 28 A LYS 29 n 14 LYS 29 A ASP 30 n 15 ASP 30 A SER 31 n 16 SER 31 A GLY 32 n 17 GLY 32 A MET 33 n 18 MET 33 A GLU 34 n 19 GLU 34 A ASP 35 n 20 ASP 35 A PHE 36 n 21 PHE 36 A GLY 37 n 22 GLY 37 A PHE 38 n 23 PHE 38 A SER 39 n 24 SER 39 A VAL 40 n 25 VAL 40 A ALA 41 n 26 ALA 41 A ASP 42 n 27 ASP 42 A GLY 43 n 28 GLY 43 A LEU 44 n 29 LEU 44 A LEU 45 n 30 LEU 45 A GLU 46 n 31 GLU 46 A LYS 47 n 32 LYS 47 A GLY 48 n 33 GLY 48 A VAL 49 n 34 VAL 49 A TYR 50 n 35 TYR 50 A VAL 51 n 36 VAL 51 A LYS 52 n 37 LYS 52 A ASN 53 n 38 ASN 53 A ILE 54 n 39 ILE 54 A ARG 55 n 40 ARG 55 A PRO 56 n 41 PRO 56 A ALA 57 n 42 ALA 57 A GLY 58 n 43 GLY 58 A PRO 59 n 44 PRO 59 A GLY 60 n 45 GLY 60 A ASP 61 n 46 ASP 61 A LEU 62 n 47 LEU 62 A GLY 63 n 48 GLY 63 A GLY 64 n 49 GLY 64 A LEU 65 n 50 LEU 65 A LYS 66 n 51 LYS 66 A PRO 67 n 52 PRO 67 A TYR 68 n 53 TYR 68 A ASP 69 n 54 ASP 69 A ARG 70 n 55 ARG 70 A LEU 71 n 56 LEU 71 A LEU 72 n 57 LEU 72 A GLN 73 n 58 GLN 73 A VAL 74 n 59 VAL 74 A ASN 75 n 60 ASN 75 A HIS 76 n 61 HIS 76 A VAL 77 n 62 VAL 77 A ARG 78 n 63 ARG 78 A THR 79 n 64 THR 79 A ARG 80 n 65 ARG 80 A ASP 81 n 66 ASP 81 A PHE 82 n 67 PHE 82 A ASP 83 n 68 ASP 83 A CYS 84 n 69 CYS 84 A CYS 85 n 70 CYS 85 A LEU 86 n 71 LEU 86 A VAL 87 n 72 VAL 87 A VAL 88 n 73 VAL 88 A PRO 89 n 74 PRO 89 A LEU 90 n 75 LEU 90 A ILE 91 n 76 ILE 91 A ALA 92 n 77 ALA 92 A GLU 93 n 78 GLU 93 A SER 94 n 79 SER 94 A GLY 95 n 80 GLY 95 A ASN 96 n 81 ASN 96 A LYS 97 n 82 LYS 97 A LEU 98 n 83 LEU 98 A ASP 99 n 84 ASP 99 A LEU 100 n 85 LEU 100 A VAL 101 n 86 VAL 101 A ILE 102 n 87 ILE 102 A SER 103 n 88 SER 103 A ARG 104 n 89 ARG 104 A ASN 105 n 90 ASN 105 A PRO 106 n 91 PRO 106 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 25 A N VAL 10 A O LEU 100 A O LEU 85 A O VAL 101 A O VAL 86 A N GLN 73 A N GLN 58 A N VAL 74 A N VAL 59 A O VAL 77 A O VAL 62 A N ALA 41 A N ALA 26 A O TYR 50 A O TYR 35 1 A THR 18 -163.00 -55.98 1 A PRO 19 -47.72 95.70 1 A VAL 20 -50.00 170.30 1 A SER 31 -60.11 84.99 1 A PHE 38 -174.04 134.45 1 A GLU 46 -157.88 -83.78 1 A LYS 47 -175.68 134.22 1 A PRO 56 -55.53 109.17 1 A ALA 57 83.38 38.14 1 A PRO 67 -39.47 135.75 1 A TYR 68 85.44 -5.31 1 A ASP 69 -56.22 85.10 1 A LEU 71 -54.50 107.28 1 A HIS 76 86.59 -19.37 1 A THR 79 -96.51 30.93 2 A PRO 17 -61.79 -179.32 2 A THR 18 59.03 146.06 2 A PRO 19 -50.72 178.80 2 A VAL 20 -46.07 170.11 2 A PHE 38 -172.05 124.42 2 A GLU 46 -150.12 25.44 2 A LYS 47 26.26 63.08 2 A ALA 57 83.10 29.35 2 A TYR 68 90.32 -17.21 2 A ASP 69 -53.34 83.75 2 A ARG 70 -67.92 99.61 2 A ASN 75 75.54 -59.11 2 A HIS 76 -167.47 -14.71 2 A ARG 78 -69.73 87.23 3 A THR 18 -169.14 -52.98 3 A VAL 20 -44.27 161.23 3 A SER 31 -60.59 84.58 3 A PHE 38 -173.31 130.62 3 A GLU 46 -155.92 51.79 3 A LYS 47 21.62 96.44 3 A ALA 57 35.77 75.34 3 A PRO 67 -66.92 66.67 3 A TYR 68 -178.16 -24.18 3 A ASP 69 -44.00 94.96 3 A LEU 71 -53.98 107.05 3 A ASN 75 72.11 -61.58 3 A HIS 76 -168.07 -18.41 3 A ARG 78 -69.69 93.61 3 A THR 79 -95.75 34.41 4 A THR 18 -167.49 -60.38 4 A SER 31 -56.86 85.08 4 A PHE 38 -174.38 128.01 4 A GLU 46 -156.20 59.95 4 A LYS 47 32.85 -166.85 4 A ALA 57 82.99 28.77 4 A TYR 68 82.98 -10.13 4 A ASP 69 -54.74 88.21 4 A LEU 71 -56.14 107.89 4 A ASN 75 73.28 -58.84 4 A HIS 76 -167.47 -12.10 5 A PRO 19 -42.37 168.90 5 A SER 31 -59.26 85.31 5 A PHE 36 -97.87 32.15 5 A PHE 38 -171.31 149.58 5 A GLU 46 -152.69 29.78 5 A LYS 47 26.99 91.23 5 A LYS 52 -144.90 -42.12 5 A PRO 56 -68.11 55.06 5 A ALA 57 -173.82 -43.65 5 A PRO 67 -65.55 64.43 5 A TYR 68 -174.12 -30.08 5 A ASP 69 -50.25 96.27 5 A LEU 71 -54.42 108.42 5 A ASN 75 75.31 -58.61 5 A HIS 76 -167.67 -13.76 5 A THR 79 -143.76 25.93 5 A ASN 96 -163.12 16.76 6 A VAL 20 -46.89 170.25 6 A PHE 38 -174.44 117.30 6 A GLU 46 -152.97 27.60 6 A LYS 47 27.09 91.32 6 A TYR 68 83.21 -10.01 6 A ASP 69 -54.61 87.06 6 A ARG 70 -66.93 97.51 6 A LEU 71 -55.58 107.39 6 A HIS 76 86.72 -14.89 6 A THR 79 -144.24 27.97 6 A ASN 96 -165.60 -34.99 7 A PRO 17 -67.80 -80.18 7 A PRO 19 -59.20 -144.31 7 A PHE 36 -97.46 32.55 7 A PHE 38 -172.14 135.29 7 A LYS 47 30.03 88.46 7 A ALA 57 38.65 33.94 7 A TYR 68 85.44 -3.86 7 A ASP 69 -53.19 89.71 7 A ASN 75 76.25 -58.19 7 A HIS 76 -167.06 -14.22 7 A THR 79 -146.07 18.39 8 A THR 18 59.82 150.08 8 A PRO 19 -52.78 -147.94 8 A VAL 20 -36.98 153.04 8 A SER 31 -59.25 85.15 8 A LYS 47 29.05 82.91 8 A LYS 52 -147.00 -35.36 8 A TYR 68 91.14 -21.13 8 A ASP 69 -53.75 85.49 8 A ASN 75 74.65 -58.59 8 A HIS 76 -167.22 -18.02 8 A ARG 78 -69.65 84.36 8 A THR 79 -94.62 43.94 9 A THR 18 176.98 -50.95 9 A PRO 19 -58.17 92.73 9 A VAL 20 -47.34 170.22 9 A PHE 36 -97.46 32.75 9 A PHE 38 -174.65 116.37 9 A GLU 46 -153.07 27.01 9 A LYS 47 26.99 95.47 9 A LYS 52 -145.40 -36.97 9 A ALA 57 87.77 -20.80 9 A TYR 68 -176.32 -25.83 9 A ASP 69 -39.56 90.84 9 A ARG 70 -67.63 99.30 9 A HIS 76 76.01 42.98 9 A THR 79 -144.47 28.14 9 A ASN 96 -166.35 -36.12 10 A PRO 17 -74.36 49.36 10 A THR 18 -169.77 -51.91 10 A SER 31 -68.27 82.59 10 A PHE 38 -171.60 148.69 10 A LEU 45 -154.05 19.70 10 A GLU 46 -155.36 22.24 10 A LYS 47 24.82 50.22 10 A LYS 52 -142.85 -34.13 10 A ALA 57 -173.04 -51.63 10 A TYR 68 88.62 -12.55 10 A ASP 69 -52.88 85.73 10 A HIS 76 85.81 -7.03 10 A THR 79 -145.47 35.94 10 A ASN 96 -165.98 -45.75 11 A PHE 38 -174.15 119.82 11 A GLU 46 -153.10 27.39 11 A LYS 47 26.54 78.48 11 A ALA 57 39.27 33.35 11 A TYR 68 88.70 -13.12 11 A ASP 69 -55.99 85.38 11 A ASN 75 46.58 29.58 11 A HIS 76 85.90 -19.10 11 A THR 79 -141.53 38.77 11 A ASN 96 -166.82 -35.06 12 A PRO 17 -69.74 -74.65 12 A THR 18 -167.99 -58.98 12 A VAL 20 -40.48 160.30 12 A PHE 38 -173.03 141.67 12 A LYS 47 26.36 78.20 12 A ALA 57 89.14 -28.88 12 A TYR 68 84.42 0.62 12 A ASP 69 -52.97 80.33 12 A HIS 76 87.49 -22.66 12 A THR 79 -144.91 25.02 13 A PRO 19 -53.16 -171.12 13 A PHE 38 -173.62 145.79 13 A GLU 46 -153.36 33.51 13 A LYS 47 25.24 91.42 13 A ALA 57 39.06 33.83 13 A TYR 68 85.50 7.49 13 A ASP 69 -53.56 85.84 13 A LEU 71 -53.33 107.88 13 A HIS 76 87.21 -12.12 13 A THR 79 -146.39 19.69 13 A ASN 96 -162.71 18.29 13 A LYS 97 -161.80 116.77 14 A THR 18 -179.05 -61.67 14 A SER 31 -61.75 84.16 14 A PHE 38 -172.85 145.01 14 A GLU 46 -153.17 25.22 14 A LYS 47 27.38 80.86 14 A ALA 57 39.57 33.77 14 A TYR 68 84.16 3.15 14 A ASP 69 -54.43 87.61 14 A HIS 76 85.88 -14.79 14 A THR 79 -144.50 32.01 14 A ASN 96 -164.24 20.41 14 A LYS 97 -165.55 113.03 15 A PRO 19 -56.49 -164.18 15 A SER 31 -58.82 84.41 15 A PHE 38 -174.33 138.56 15 A LEU 45 -155.53 -38.77 15 A LYS 47 27.76 78.79 15 A TYR 68 85.02 4.10 15 A ASP 69 -52.50 89.72 15 A LEU 71 -55.00 107.01 15 A HIS 76 89.73 -17.94 15 A ASN 96 -166.23 -41.32 16 A VAL 20 -46.13 169.94 16 A PHE 38 -172.73 127.48 16 A LEU 45 -150.15 0.47 16 A GLU 46 -158.17 31.45 16 A LYS 47 28.59 90.77 16 A ALA 57 84.58 -6.51 16 A TYR 68 90.29 -22.25 16 A ASP 69 -55.26 87.75 16 A HIS 76 86.35 -15.94 16 A THR 79 -143.08 28.22 17 A VAL 20 -45.63 150.77 17 A PHE 38 -172.24 147.76 17 A GLU 46 -153.07 28.10 17 A LYS 47 27.38 91.20 17 A ALA 57 81.34 83.35 17 A TYR 68 82.96 11.10 17 A ASP 69 -53.74 88.44 17 A LEU 71 -50.86 107.51 17 A ASN 75 75.37 -59.37 17 A HIS 76 -167.29 -11.22 17 A THR 79 -143.17 32.75 17 A ASP 81 -94.24 30.35 18 A PRO 17 -71.23 -70.99 18 A PRO 19 -58.67 -160.33 18 A SER 31 -60.04 84.95 18 A PHE 36 -98.15 31.99 18 A PHE 38 -173.47 119.22 18 A LYS 47 29.83 89.74 18 A ALA 57 83.54 28.95 18 A TYR 68 85.30 -7.82 18 A ASP 69 -54.41 86.65 18 A ASN 75 75.46 -57.46 18 A HIS 76 -167.19 -14.69 18 A THR 79 -142.69 32.44 19 A THR 18 -168.86 -52.05 19 A VAL 20 -46.08 168.41 19 A PHE 38 -172.50 123.15 19 A LYS 47 27.71 91.84 19 A ALA 57 86.64 -14.67 19 A TYR 68 85.32 -1.52 19 A ASP 69 -53.08 88.23 19 A HIS 76 87.60 -21.92 19 A THR 79 -144.89 29.87 19 A ASN 96 -166.24 -39.48 20 A THR 18 178.76 -61.93 20 A VAL 20 -45.95 160.49 20 A PHE 38 -173.72 138.93 20 A GLU 46 -153.85 22.92 20 A LYS 47 24.09 79.84 20 A PRO 56 -58.50 105.99 20 A ALA 57 82.35 28.56 20 A TYR 68 84.64 -5.39 20 A ASP 69 -53.97 85.56 20 A LEU 71 -58.93 107.76 20 A HIS 76 87.66 -14.68 20 A ARG 78 -69.01 87.09 20 A THR 79 -95.95 32.08 The PDZ7 of Glutamate Receptor Interacting Protein Binds to its Target via a Novel Hydrophobic Surface Area 1 N N A GLY 58 A GLY 43 HELX_P A GLY 64 A GLY 49 1 1 7 A ASP 83 A ASP 68 HELX_P A GLU 93 A GLU 78 1 2 11 PROTEIN BINDING six beta-strands and two alpha-helices, PROTEIN BINDING GRIP1_RAT UNP 1 980 P97879 SPTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESG NKLDLVISRNP 980 1070 1M5Z 16 106 P97879 A 1 1 91 4 2 anti-parallel anti-parallel anti-parallel anti-parallel A GLU 21 A GLU 6 A TYR 28 A TYR 13 A LYS 97 A LYS 82 A ARG 104 A ARG 89 A ARG 70 A ARG 55 A VAL 74 A VAL 59 A VAL 77 A VAL 62 A ARG 78 A ARG 63 A PHE 38 A PHE 23 A ASP 42 A ASP 27 A VAL 49 A VAL 34 A ILE 54 A ILE 39