1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Feng, W.
Fan, J.
Jiang, M.
Shi, Y.
Zhang, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
277
41140
41146
10.1074/jbc.M207206200
12196542
The PDZ7 of Glutamate Receptor Interacting Protein Binds to its Target via a Novel Hydrophobic Surface Area
2002
10.2210/pdb1m5z/pdb
pdb_00001m5z
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
9979.455
AMPA receptor interacting protein
The Seventh PDZ Domain of Glutamate Receptor Interacting Protein
1
man
polymer
GRIP
no
no
SPTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESG
NKLDLVISRNP
SPTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESG
NKLDLVISRNP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norway rat
Rattus
Escherichia
sample
10116
Rattus norvegicus
562
Escherichia coli
plasmid
pET32a
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2002-11-06
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
PDBJ
2002-07-11
REL
REL
structures with the lowest energy
200
20
2D NOESY
3D_15N-separated_NOESY
3D_13C-separated_NOESY
100mM potassium phosphate buffer
6.5
1
atm
298
K
the structures are based on a total of 1826 restraints, 1644 are NOE-derived
distance constraints, 126 dihedral angle restraints, 56 distance restraints
from hydrogen bonds
torsion angle dynamics
11
closest to the average
1.0 mM unlabelled PDZ7 in 99.9% D2O
99.9% D2O
1.0 mM 15N-labelled protein in 90% H2O/10% D2O
90% H2O/10% D2O
1.0 mM 15N/13C-labelled samples in 99.9% D2O
99.9% D2O
1.0 mM 15N/13C-labelled samples in 90% H2O/10% D2O
90% H2O/10% D2O
Brunger
structure solution
CNS
1.1
Brunger
refinement
CNS
1.1
500
Varian
INOVA
750
Varian
INOVA
SER
16
n
1
SER
16
A
PRO
17
n
2
PRO
17
A
THR
18
n
3
THR
18
A
PRO
19
n
4
PRO
19
A
VAL
20
n
5
VAL
20
A
GLU
21
n
6
GLU
21
A
LEU
22
n
7
LEU
22
A
HIS
23
n
8
HIS
23
A
LYS
24
n
9
LYS
24
A
VAL
25
n
10
VAL
25
A
THR
26
n
11
THR
26
A
LEU
27
n
12
LEU
27
A
TYR
28
n
13
TYR
28
A
LYS
29
n
14
LYS
29
A
ASP
30
n
15
ASP
30
A
SER
31
n
16
SER
31
A
GLY
32
n
17
GLY
32
A
MET
33
n
18
MET
33
A
GLU
34
n
19
GLU
34
A
ASP
35
n
20
ASP
35
A
PHE
36
n
21
PHE
36
A
GLY
37
n
22
GLY
37
A
PHE
38
n
23
PHE
38
A
SER
39
n
24
SER
39
A
VAL
40
n
25
VAL
40
A
ALA
41
n
26
ALA
41
A
ASP
42
n
27
ASP
42
A
GLY
43
n
28
GLY
43
A
LEU
44
n
29
LEU
44
A
LEU
45
n
30
LEU
45
A
GLU
46
n
31
GLU
46
A
LYS
47
n
32
LYS
47
A
GLY
48
n
33
GLY
48
A
VAL
49
n
34
VAL
49
A
TYR
50
n
35
TYR
50
A
VAL
51
n
36
VAL
51
A
LYS
52
n
37
LYS
52
A
ASN
53
n
38
ASN
53
A
ILE
54
n
39
ILE
54
A
ARG
55
n
40
ARG
55
A
PRO
56
n
41
PRO
56
A
ALA
57
n
42
ALA
57
A
GLY
58
n
43
GLY
58
A
PRO
59
n
44
PRO
59
A
GLY
60
n
45
GLY
60
A
ASP
61
n
46
ASP
61
A
LEU
62
n
47
LEU
62
A
GLY
63
n
48
GLY
63
A
GLY
64
n
49
GLY
64
A
LEU
65
n
50
LEU
65
A
LYS
66
n
51
LYS
66
A
PRO
67
n
52
PRO
67
A
TYR
68
n
53
TYR
68
A
ASP
69
n
54
ASP
69
A
ARG
70
n
55
ARG
70
A
LEU
71
n
56
LEU
71
A
LEU
72
n
57
LEU
72
A
GLN
73
n
58
GLN
73
A
VAL
74
n
59
VAL
74
A
ASN
75
n
60
ASN
75
A
HIS
76
n
61
HIS
76
A
VAL
77
n
62
VAL
77
A
ARG
78
n
63
ARG
78
A
THR
79
n
64
THR
79
A
ARG
80
n
65
ARG
80
A
ASP
81
n
66
ASP
81
A
PHE
82
n
67
PHE
82
A
ASP
83
n
68
ASP
83
A
CYS
84
n
69
CYS
84
A
CYS
85
n
70
CYS
85
A
LEU
86
n
71
LEU
86
A
VAL
87
n
72
VAL
87
A
VAL
88
n
73
VAL
88
A
PRO
89
n
74
PRO
89
A
LEU
90
n
75
LEU
90
A
ILE
91
n
76
ILE
91
A
ALA
92
n
77
ALA
92
A
GLU
93
n
78
GLU
93
A
SER
94
n
79
SER
94
A
GLY
95
n
80
GLY
95
A
ASN
96
n
81
ASN
96
A
LYS
97
n
82
LYS
97
A
LEU
98
n
83
LEU
98
A
ASP
99
n
84
ASP
99
A
LEU
100
n
85
LEU
100
A
VAL
101
n
86
VAL
101
A
ILE
102
n
87
ILE
102
A
SER
103
n
88
SER
103
A
ARG
104
n
89
ARG
104
A
ASN
105
n
90
ASN
105
A
PRO
106
n
91
PRO
106
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
25
A
N
VAL
10
A
O
LEU
100
A
O
LEU
85
A
O
VAL
101
A
O
VAL
86
A
N
GLN
73
A
N
GLN
58
A
N
VAL
74
A
N
VAL
59
A
O
VAL
77
A
O
VAL
62
A
N
ALA
41
A
N
ALA
26
A
O
TYR
50
A
O
TYR
35
1
A
THR
18
-163.00
-55.98
1
A
PRO
19
-47.72
95.70
1
A
VAL
20
-50.00
170.30
1
A
SER
31
-60.11
84.99
1
A
PHE
38
-174.04
134.45
1
A
GLU
46
-157.88
-83.78
1
A
LYS
47
-175.68
134.22
1
A
PRO
56
-55.53
109.17
1
A
ALA
57
83.38
38.14
1
A
PRO
67
-39.47
135.75
1
A
TYR
68
85.44
-5.31
1
A
ASP
69
-56.22
85.10
1
A
LEU
71
-54.50
107.28
1
A
HIS
76
86.59
-19.37
1
A
THR
79
-96.51
30.93
2
A
PRO
17
-61.79
-179.32
2
A
THR
18
59.03
146.06
2
A
PRO
19
-50.72
178.80
2
A
VAL
20
-46.07
170.11
2
A
PHE
38
-172.05
124.42
2
A
GLU
46
-150.12
25.44
2
A
LYS
47
26.26
63.08
2
A
ALA
57
83.10
29.35
2
A
TYR
68
90.32
-17.21
2
A
ASP
69
-53.34
83.75
2
A
ARG
70
-67.92
99.61
2
A
ASN
75
75.54
-59.11
2
A
HIS
76
-167.47
-14.71
2
A
ARG
78
-69.73
87.23
3
A
THR
18
-169.14
-52.98
3
A
VAL
20
-44.27
161.23
3
A
SER
31
-60.59
84.58
3
A
PHE
38
-173.31
130.62
3
A
GLU
46
-155.92
51.79
3
A
LYS
47
21.62
96.44
3
A
ALA
57
35.77
75.34
3
A
PRO
67
-66.92
66.67
3
A
TYR
68
-178.16
-24.18
3
A
ASP
69
-44.00
94.96
3
A
LEU
71
-53.98
107.05
3
A
ASN
75
72.11
-61.58
3
A
HIS
76
-168.07
-18.41
3
A
ARG
78
-69.69
93.61
3
A
THR
79
-95.75
34.41
4
A
THR
18
-167.49
-60.38
4
A
SER
31
-56.86
85.08
4
A
PHE
38
-174.38
128.01
4
A
GLU
46
-156.20
59.95
4
A
LYS
47
32.85
-166.85
4
A
ALA
57
82.99
28.77
4
A
TYR
68
82.98
-10.13
4
A
ASP
69
-54.74
88.21
4
A
LEU
71
-56.14
107.89
4
A
ASN
75
73.28
-58.84
4
A
HIS
76
-167.47
-12.10
5
A
PRO
19
-42.37
168.90
5
A
SER
31
-59.26
85.31
5
A
PHE
36
-97.87
32.15
5
A
PHE
38
-171.31
149.58
5
A
GLU
46
-152.69
29.78
5
A
LYS
47
26.99
91.23
5
A
LYS
52
-144.90
-42.12
5
A
PRO
56
-68.11
55.06
5
A
ALA
57
-173.82
-43.65
5
A
PRO
67
-65.55
64.43
5
A
TYR
68
-174.12
-30.08
5
A
ASP
69
-50.25
96.27
5
A
LEU
71
-54.42
108.42
5
A
ASN
75
75.31
-58.61
5
A
HIS
76
-167.67
-13.76
5
A
THR
79
-143.76
25.93
5
A
ASN
96
-163.12
16.76
6
A
VAL
20
-46.89
170.25
6
A
PHE
38
-174.44
117.30
6
A
GLU
46
-152.97
27.60
6
A
LYS
47
27.09
91.32
6
A
TYR
68
83.21
-10.01
6
A
ASP
69
-54.61
87.06
6
A
ARG
70
-66.93
97.51
6
A
LEU
71
-55.58
107.39
6
A
HIS
76
86.72
-14.89
6
A
THR
79
-144.24
27.97
6
A
ASN
96
-165.60
-34.99
7
A
PRO
17
-67.80
-80.18
7
A
PRO
19
-59.20
-144.31
7
A
PHE
36
-97.46
32.55
7
A
PHE
38
-172.14
135.29
7
A
LYS
47
30.03
88.46
7
A
ALA
57
38.65
33.94
7
A
TYR
68
85.44
-3.86
7
A
ASP
69
-53.19
89.71
7
A
ASN
75
76.25
-58.19
7
A
HIS
76
-167.06
-14.22
7
A
THR
79
-146.07
18.39
8
A
THR
18
59.82
150.08
8
A
PRO
19
-52.78
-147.94
8
A
VAL
20
-36.98
153.04
8
A
SER
31
-59.25
85.15
8
A
LYS
47
29.05
82.91
8
A
LYS
52
-147.00
-35.36
8
A
TYR
68
91.14
-21.13
8
A
ASP
69
-53.75
85.49
8
A
ASN
75
74.65
-58.59
8
A
HIS
76
-167.22
-18.02
8
A
ARG
78
-69.65
84.36
8
A
THR
79
-94.62
43.94
9
A
THR
18
176.98
-50.95
9
A
PRO
19
-58.17
92.73
9
A
VAL
20
-47.34
170.22
9
A
PHE
36
-97.46
32.75
9
A
PHE
38
-174.65
116.37
9
A
GLU
46
-153.07
27.01
9
A
LYS
47
26.99
95.47
9
A
LYS
52
-145.40
-36.97
9
A
ALA
57
87.77
-20.80
9
A
TYR
68
-176.32
-25.83
9
A
ASP
69
-39.56
90.84
9
A
ARG
70
-67.63
99.30
9
A
HIS
76
76.01
42.98
9
A
THR
79
-144.47
28.14
9
A
ASN
96
-166.35
-36.12
10
A
PRO
17
-74.36
49.36
10
A
THR
18
-169.77
-51.91
10
A
SER
31
-68.27
82.59
10
A
PHE
38
-171.60
148.69
10
A
LEU
45
-154.05
19.70
10
A
GLU
46
-155.36
22.24
10
A
LYS
47
24.82
50.22
10
A
LYS
52
-142.85
-34.13
10
A
ALA
57
-173.04
-51.63
10
A
TYR
68
88.62
-12.55
10
A
ASP
69
-52.88
85.73
10
A
HIS
76
85.81
-7.03
10
A
THR
79
-145.47
35.94
10
A
ASN
96
-165.98
-45.75
11
A
PHE
38
-174.15
119.82
11
A
GLU
46
-153.10
27.39
11
A
LYS
47
26.54
78.48
11
A
ALA
57
39.27
33.35
11
A
TYR
68
88.70
-13.12
11
A
ASP
69
-55.99
85.38
11
A
ASN
75
46.58
29.58
11
A
HIS
76
85.90
-19.10
11
A
THR
79
-141.53
38.77
11
A
ASN
96
-166.82
-35.06
12
A
PRO
17
-69.74
-74.65
12
A
THR
18
-167.99
-58.98
12
A
VAL
20
-40.48
160.30
12
A
PHE
38
-173.03
141.67
12
A
LYS
47
26.36
78.20
12
A
ALA
57
89.14
-28.88
12
A
TYR
68
84.42
0.62
12
A
ASP
69
-52.97
80.33
12
A
HIS
76
87.49
-22.66
12
A
THR
79
-144.91
25.02
13
A
PRO
19
-53.16
-171.12
13
A
PHE
38
-173.62
145.79
13
A
GLU
46
-153.36
33.51
13
A
LYS
47
25.24
91.42
13
A
ALA
57
39.06
33.83
13
A
TYR
68
85.50
7.49
13
A
ASP
69
-53.56
85.84
13
A
LEU
71
-53.33
107.88
13
A
HIS
76
87.21
-12.12
13
A
THR
79
-146.39
19.69
13
A
ASN
96
-162.71
18.29
13
A
LYS
97
-161.80
116.77
14
A
THR
18
-179.05
-61.67
14
A
SER
31
-61.75
84.16
14
A
PHE
38
-172.85
145.01
14
A
GLU
46
-153.17
25.22
14
A
LYS
47
27.38
80.86
14
A
ALA
57
39.57
33.77
14
A
TYR
68
84.16
3.15
14
A
ASP
69
-54.43
87.61
14
A
HIS
76
85.88
-14.79
14
A
THR
79
-144.50
32.01
14
A
ASN
96
-164.24
20.41
14
A
LYS
97
-165.55
113.03
15
A
PRO
19
-56.49
-164.18
15
A
SER
31
-58.82
84.41
15
A
PHE
38
-174.33
138.56
15
A
LEU
45
-155.53
-38.77
15
A
LYS
47
27.76
78.79
15
A
TYR
68
85.02
4.10
15
A
ASP
69
-52.50
89.72
15
A
LEU
71
-55.00
107.01
15
A
HIS
76
89.73
-17.94
15
A
ASN
96
-166.23
-41.32
16
A
VAL
20
-46.13
169.94
16
A
PHE
38
-172.73
127.48
16
A
LEU
45
-150.15
0.47
16
A
GLU
46
-158.17
31.45
16
A
LYS
47
28.59
90.77
16
A
ALA
57
84.58
-6.51
16
A
TYR
68
90.29
-22.25
16
A
ASP
69
-55.26
87.75
16
A
HIS
76
86.35
-15.94
16
A
THR
79
-143.08
28.22
17
A
VAL
20
-45.63
150.77
17
A
PHE
38
-172.24
147.76
17
A
GLU
46
-153.07
28.10
17
A
LYS
47
27.38
91.20
17
A
ALA
57
81.34
83.35
17
A
TYR
68
82.96
11.10
17
A
ASP
69
-53.74
88.44
17
A
LEU
71
-50.86
107.51
17
A
ASN
75
75.37
-59.37
17
A
HIS
76
-167.29
-11.22
17
A
THR
79
-143.17
32.75
17
A
ASP
81
-94.24
30.35
18
A
PRO
17
-71.23
-70.99
18
A
PRO
19
-58.67
-160.33
18
A
SER
31
-60.04
84.95
18
A
PHE
36
-98.15
31.99
18
A
PHE
38
-173.47
119.22
18
A
LYS
47
29.83
89.74
18
A
ALA
57
83.54
28.95
18
A
TYR
68
85.30
-7.82
18
A
ASP
69
-54.41
86.65
18
A
ASN
75
75.46
-57.46
18
A
HIS
76
-167.19
-14.69
18
A
THR
79
-142.69
32.44
19
A
THR
18
-168.86
-52.05
19
A
VAL
20
-46.08
168.41
19
A
PHE
38
-172.50
123.15
19
A
LYS
47
27.71
91.84
19
A
ALA
57
86.64
-14.67
19
A
TYR
68
85.32
-1.52
19
A
ASP
69
-53.08
88.23
19
A
HIS
76
87.60
-21.92
19
A
THR
79
-144.89
29.87
19
A
ASN
96
-166.24
-39.48
20
A
THR
18
178.76
-61.93
20
A
VAL
20
-45.95
160.49
20
A
PHE
38
-173.72
138.93
20
A
GLU
46
-153.85
22.92
20
A
LYS
47
24.09
79.84
20
A
PRO
56
-58.50
105.99
20
A
ALA
57
82.35
28.56
20
A
TYR
68
84.64
-5.39
20
A
ASP
69
-53.97
85.56
20
A
LEU
71
-58.93
107.76
20
A
HIS
76
87.66
-14.68
20
A
ARG
78
-69.01
87.09
20
A
THR
79
-95.95
32.08
The PDZ7 of Glutamate Receptor Interacting Protein Binds to its Target via a Novel Hydrophobic Surface Area
1
N
N
A
GLY
58
A
GLY
43
HELX_P
A
GLY
64
A
GLY
49
1
1
7
A
ASP
83
A
ASP
68
HELX_P
A
GLU
93
A
GLU
78
1
2
11
PROTEIN BINDING
six beta-strands and two alpha-helices, PROTEIN BINDING
GRIP1_RAT
UNP
1
980
P97879
SPTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESG
NKLDLVISRNP
980
1070
1M5Z
16
106
P97879
A
1
1
91
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
21
A
GLU
6
A
TYR
28
A
TYR
13
A
LYS
97
A
LYS
82
A
ARG
104
A
ARG
89
A
ARG
70
A
ARG
55
A
VAL
74
A
VAL
59
A
VAL
77
A
VAL
62
A
ARG
78
A
ARG
63
A
PHE
38
A
PHE
23
A
ASP
42
A
ASP
27
A
VAL
49
A
VAL
34
A
ILE
54
A
ILE
39