1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Malliavin, T.E.
Snoussi, K.
Leroy, J.-L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
UK
MAGN.RESON.CHEM.
MRCHEG
0731
0749-1581
41
18
25
-1
The NMR structure of [Xd(C2)]4 investigated by molecular dynamics simulations
2003
10.2210/pdb1m6a/pdb
pdb_00001m6a
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
533.406
5'-D(*CP*C)-3'
4
syn
polymer
no
no
(DC)(DC)
CC
A,B,C,D
polydeoxyribonucleotide
n
n
-20.906
2
15
A
2
C
2
-179.967
A_DC2:DC2_C
1
-0.026
-2.293
-0.001
-1.824
5.097
2
15
D
1
B
1
-179.999
D_DC1:DC1_B
2
11.246
-1.981
0.004
-1.477
-5.110
2
15
A
1
C
1
179.976
A_DC1:DC1_C
3
-11.147
1.981
0.004
1.477
20.919
2
15
D
2
B
2
179.987
D_DC2:DC2_B
4
0.019
2.294
0.003
1.823
-0.001
-179.999
A
D
2
1
44.694
C
B
2
1
-0.001
-89.388
-1.780
3.108
AD_DC2DC1:DC1DC2_BC
1
-156.226
-78.113
-169.791
-1.554
-0.890
0.001
179.955
D
A
1
1
63.005
B
C
1
1
0.002
125.998
-1.810
-1.845
DA_DC1DC1:DC1DC1_CB
2
-128.452
64.232
97.901
-0.923
0.905
0.001
179.967
A
D
1
2
-44.669
C
B
1
2
0.002
-89.333
-1.776
3.107
AD_DC1DC2:DC2DC1_BC
3
-156.204
78.107
107.067
1.554
0.887
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-08-07
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2002-07-15
REL
REL
The submitted conformer model is the best structure with the lowest energy.
45
1
2D NOESY
sodium counter-ion
4.3
ambient
273
K
SIMULATED ANNEALING, MOLECULAR DYNAMICS
1
the structure with the lowest energy was selected. the structure with the fewest number of violations was selected.
12 MM [XD(C2)]4 90% H2O, 10% D2O
90% H2O/10% D2O
MSI
data analysis
Felix
95.0
BRUNGER, A.T.
refinement
X-PLOR
3.851
360
HOME-MADE
HOME-MADE
CYT
1
n
1
DC
1
A
CYT
2
n
2
DC
2
A
CYT
1
n
1
DC
1
B
CYT
2
n
2
DC
2
B
CYT
1
n
1
DC
1
C
CYT
2
n
2
DC
2
C
CYT
1
n
1
DC
1
D
CYT
2
n
2
DC
2
D
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
2.23
0.30
108.30
110.53
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
1.93
0.30
108.30
110.23
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
2.16
0.30
108.30
110.46
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
1.95
0.30
108.30
110.25
B
B
B
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
2.17
0.30
108.30
110.47
C
C
C
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
1.87
0.30
108.30
110.17
C
C
C
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
2.24
0.30
108.30
110.54
D
D
D
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
1.92
0.30
108.30
110.22
D
D
D
O4'
C1'
N1
DC
DC
DC
2
2
2
N
NMR structure of the i-Motif Tetramer Formed by XC2
1
N
N
1
N
N
1
N
N
1
N
N
hydrog
TYPE_15_PAIR
A
DC
1
A
N4
DC
1
1_555
C
DC
1
C
O2
DC
1
1_555
hydrog
TYPE_15_PAIR
A
DC
1
A
O2
DC
1
1_555
C
DC
1
C
N4
DC
1
1_555
hydrog
TYPE_15_PAIR
A
DC
2
A
N4
DC
2
1_555
C
DC
2
C
O2
DC
2
1_555
hydrog
TYPE_15_PAIR
A
DC
2
A
O2
DC
2
1_555
C
DC
2
C
N4
DC
2
1_555
hydrog
TYPE_15_PAIR
B
DC
1
B
N4
DC
1
1_555
D
DC
1
D
O2
DC
1
1_555
hydrog
TYPE_15_PAIR
B
DC
1
B
O2
DC
1
1_555
D
DC
1
D
N4
DC
1
1_555
hydrog
TYPE_15_PAIR
B
DC
2
B
N4
DC
2
1_555
D
DC
2
D
O2
DC
2
1_555
hydrog
TYPE_15_PAIR
B
DC
2
B
O2
DC
2
1_555
D
DC
2
D
N4
DC
2
1_555
DNA
elementary i-motif, MD, DNA
1M6A
PDB
1
1M6A
1
2
1M6A
1
2
1M6A
A
1
1
2
1
2
1M6A
1
2
1M6A
B
1
1
2
1
2
1M6A
1
2
1M6A
C
1
1
2
1
2
1M6A
1
2
1M6A
D
1
1
2