1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Malliavin, T.E. Snoussi, K. Leroy, J.-L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking UK MAGN.RESON.CHEM. MRCHEG 0731 0749-1581 41 18 25 -1 The NMR structure of [Xd(C2)]4 investigated by molecular dynamics simulations 2003 10.2210/pdb1m6a/pdb pdb_00001m6a 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 533.406 5'-D(*CP*C)-3' 4 syn polymer no no (DC)(DC) CC A,B,C,D polydeoxyribonucleotide n n -20.906 2 15 A 2 C 2 -179.967 A_DC2:DC2_C 1 -0.026 -2.293 -0.001 -1.824 5.097 2 15 D 1 B 1 -179.999 D_DC1:DC1_B 2 11.246 -1.981 0.004 -1.477 -5.110 2 15 A 1 C 1 179.976 A_DC1:DC1_C 3 -11.147 1.981 0.004 1.477 20.919 2 15 D 2 B 2 179.987 D_DC2:DC2_B 4 0.019 2.294 0.003 1.823 -0.001 -179.999 A D 2 1 44.694 C B 2 1 -0.001 -89.388 -1.780 3.108 AD_DC2DC1:DC1DC2_BC 1 -156.226 -78.113 -169.791 -1.554 -0.890 0.001 179.955 D A 1 1 63.005 B C 1 1 0.002 125.998 -1.810 -1.845 DA_DC1DC1:DC1DC1_CB 2 -128.452 64.232 97.901 -0.923 0.905 0.001 179.967 A D 1 2 -44.669 C B 1 2 0.002 -89.333 -1.776 3.107 AD_DC1DC2:DC2DC1_BC 3 -156.204 78.107 107.067 1.554 0.887 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-08-07 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name RCSB Y RCSB 2002-07-15 REL REL The submitted conformer model is the best structure with the lowest energy. 45 1 2D NOESY sodium counter-ion 4.3 ambient 273 K SIMULATED ANNEALING, MOLECULAR DYNAMICS 1 the structure with the lowest energy was selected. the structure with the fewest number of violations was selected. 12 MM [XD(C2)]4 90% H2O, 10% D2O 90% H2O/10% D2O MSI data analysis Felix 95.0 BRUNGER, A.T. refinement X-PLOR 3.851 360 HOME-MADE HOME-MADE CYT 1 n 1 DC 1 A CYT 2 n 2 DC 2 A CYT 1 n 1 DC 1 B CYT 2 n 2 DC 2 B CYT 1 n 1 DC 1 C CYT 2 n 2 DC 2 C CYT 1 n 1 DC 1 D CYT 2 n 2 DC 2 D author_defined_assembly 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 2.23 0.30 108.30 110.53 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 1.93 0.30 108.30 110.23 A A A O4' C1' N1 DC DC DC 2 2 2 N 1 2.16 0.30 108.30 110.46 B B B O4' C1' N1 DC DC DC 1 1 1 N 1 1.95 0.30 108.30 110.25 B B B O4' C1' N1 DC DC DC 2 2 2 N 1 2.17 0.30 108.30 110.47 C C C O4' C1' N1 DC DC DC 1 1 1 N 1 1.87 0.30 108.30 110.17 C C C O4' C1' N1 DC DC DC 2 2 2 N 1 2.24 0.30 108.30 110.54 D D D O4' C1' N1 DC DC DC 1 1 1 N 1 1.92 0.30 108.30 110.22 D D D O4' C1' N1 DC DC DC 2 2 2 N NMR structure of the i-Motif Tetramer Formed by XC2 1 N N 1 N N 1 N N 1 N N hydrog TYPE_15_PAIR A DC 1 A N4 DC 1 1_555 C DC 1 C O2 DC 1 1_555 hydrog TYPE_15_PAIR A DC 1 A O2 DC 1 1_555 C DC 1 C N4 DC 1 1_555 hydrog TYPE_15_PAIR A DC 2 A N4 DC 2 1_555 C DC 2 C O2 DC 2 1_555 hydrog TYPE_15_PAIR A DC 2 A O2 DC 2 1_555 C DC 2 C N4 DC 2 1_555 hydrog TYPE_15_PAIR B DC 1 B N4 DC 1 1_555 D DC 1 D O2 DC 1 1_555 hydrog TYPE_15_PAIR B DC 1 B O2 DC 1 1_555 D DC 1 D N4 DC 1 1_555 hydrog TYPE_15_PAIR B DC 2 B N4 DC 2 1_555 D DC 2 D O2 DC 2 1_555 hydrog TYPE_15_PAIR B DC 2 B O2 DC 2 1_555 D DC 2 D N4 DC 2 1_555 DNA elementary i-motif, MD, DNA 1M6A PDB 1 1M6A 1 2 1M6A 1 2 1M6A A 1 1 2 1 2 1M6A 1 2 1M6A B 1 1 2 1 2 1M6A 1 2 1M6A C 1 1 2 1 2 1M6A 1 2 1M6A D 1 1 2