0.055679 0.000000 0.000000 0.000000 0.031776 0.000000 0.000000 0.000000 0.022356 0.00000 0.00000 0.00000 Pan, B. Sundaralingam, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.0 90.0 90.0 17.96 31.47 44.73 C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C N 13 N N N 14 N C N 15 N O N 16 N N N 17 N C N 18 N N N 19 N C N 20 N C N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N O N 36 N P N 37 N O N 38 N O N 39 N O N 40 N C N 41 R C N 42 N O N 43 S C N 44 N O N 45 N C N 46 R C Y 47 N N Y 48 N C Y 49 N N Y 50 N C N 51 N C N 52 N O N 53 N N N 54 N C N 55 N N N 56 N N Y 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N O N 73 N H N 74 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N doub N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing Y 59 N sing Y 60 N sing Y 61 N doub N 62 N sing Y 63 N sing N 64 N sing Y 65 N doub N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 59 433 437 10.1107/S0907444902022655 12595699 Crystal structure of rGd(CGCGCG): a Z-DNA hexamer duplex with a 5'-(rG) overhang. 2003 10.2210/pdb1m6r/pdb pdb_00001m6r 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 mirrors IMAGE PLATE 1997-05-08 RIGAKU RAXIS IIC graphite SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 2139.411 5'-R(*G)D(*CP*GP*CP*GP*CP*G)-3' 2 syn polymer 18.015 water 63 nat water no no (DG)(DC)(DG)(DC)(DG)(DC)(DG) GCGCGCG A,B polydeoxyribonucleotide n n n n n n n 1 VAPOR DIFFUSION, HANGING DROP 6.5 2-propanol (at reservoir), Spermine tetrachloride, magnesium chloride, cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 Spermine tetrachloride 1 MgCl2 1 cacodylate 1 2-propanol 2 MgCl2 2 0.442 1 19 A 1 B 12 1.421 A_DC1:DG12_B 1 0.289 -0.275 0.210 -0.093 -4.993 1 19 A 2 B 11 1.782 A_DG2:DC11_B 2 -2.390 0.262 -0.023 -0.103 2.205 1 19 A 3 B 10 1.188 A_DC3:DG10_B 3 -4.641 -0.261 0.180 -0.144 -7.916 1 19 A 4 B 9 2.226 A_DG4:DC9_B 4 -1.071 0.182 0.174 -0.090 -1.328 1 19 A 5 B 8 1.936 A_DC5:DG8_B 5 -0.072 -0.232 0.156 -0.075 4.778 1 19 A 6 B 7 2.599 A_DG6:DC7_B 6 3.273 0.214 0.322 -0.104 5.503 -7.325 A A 1 2 24.517 B B 12 11 3.660 -3.028 0.024 5.346 AA_DC1DG2:DC11DG12_BB 1 0.969 7.842 -6.600 -26.268 5.172 3.177 -50.825 A A 2 3 6.595 B B 11 10 3.319 -5.649 -0.200 -1.125 AA_DG2DC3:DG10DC11_BB 2 -1.404 -1.639 -50.513 1.705 -0.330 5.794 -7.493 A A 3 4 24.826 B B 10 9 3.890 -3.142 0.097 5.404 AA_DC3DG4:DC9DG10_BB 3 -0.438 -3.463 -6.789 -25.062 -1.526 3.394 -53.376 A A 4 5 1.699 B B 9 8 3.419 -1.526 -0.050 -0.931 AA_DG4DC5:DG8DC9_BB 4 0.623 0.694 -53.352 1.137 -0.014 3.739 -8.383 A A 5 6 3.297 B B 8 7 3.470 -0.481 0.062 5.122 AA_DC5DG6:DC7DG8_BB 5 0.739 5.064 -8.337 -33.621 2.596 software chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references 1 0 2003-02-25 1 1 2008-04-28 1 2 2011-07-13 1 3 2017-10-11 1 4 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession RCSB Y RCSB 2002-07-17 REL REL HOH water WAT 101 2 HOH HOH 101 A WAT 102 2 HOH HOH 102 A WAT 113 2 HOH HOH 113 A WAT 114 2 HOH HOH 114 A WAT 115 2 HOH HOH 115 A WAT 116 2 HOH HOH 116 A WAT 117 2 HOH HOH 117 A WAT 118 2 HOH HOH 118 A WAT 119 2 HOH HOH 119 A WAT 121 2 HOH HOH 121 A WAT 123 2 HOH HOH 123 A WAT 124 2 HOH HOH 124 A WAT 127 2 HOH HOH 127 A WAT 128 2 HOH HOH 128 A WAT 134 2 HOH HOH 134 A WAT 135 2 HOH HOH 135 A WAT 136 2 HOH HOH 136 A WAT 137 2 HOH HOH 137 A WAT 139 2 HOH HOH 139 A WAT 140 2 HOH HOH 140 A WAT 148 2 HOH HOH 148 A WAT 149 2 HOH HOH 149 A WAT 150 2 HOH HOH 150 A WAT 151 2 HOH HOH 151 A WAT 152 2 HOH HOH 152 A WAT 161 2 HOH HOH 161 A WAT 103 2 HOH HOH 103 B WAT 104 2 HOH HOH 104 B WAT 105 2 HOH HOH 105 B WAT 106 2 HOH HOH 106 B WAT 107 2 HOH HOH 107 B WAT 108 2 HOH HOH 108 B WAT 109 2 HOH HOH 109 B WAT 110 2 HOH HOH 110 B WAT 111 2 HOH HOH 111 B WAT 112 2 HOH HOH 112 B WAT 120 2 HOH HOH 120 B WAT 122 2 HOH HOH 122 B WAT 125 2 HOH HOH 125 B WAT 126 2 HOH HOH 126 B WAT 129 2 HOH HOH 129 B WAT 130 2 HOH HOH 130 B WAT 131 2 HOH HOH 131 B WAT 132 2 HOH HOH 132 B WAT 133 2 HOH HOH 133 B WAT 138 2 HOH HOH 138 B WAT 141 2 HOH HOH 141 B WAT 142 2 HOH HOH 142 B WAT 143 2 HOH HOH 143 B WAT 144 2 HOH HOH 144 B WAT 145 2 HOH HOH 145 B WAT 146 2 HOH HOH 146 B WAT 147 2 HOH HOH 147 B WAT 153 2 HOH HOH 153 B WAT 154 2 HOH HOH 154 B WAT 155 2 HOH HOH 155 B WAT 156 2 HOH HOH 156 B WAT 157 2 HOH HOH 157 B WAT 158 2 HOH HOH 158 B WAT 159 2 HOH HOH 159 B WAT 160 2 HOH HOH 160 B WAT 162 2 HOH HOH 162 B WAT 163 2 HOH HOH 163 B n 1 0 A CYT 1 n 2 DC 1 A GUA 2 n 3 DG 2 A CYT 3 n 4 DC 3 A GUA 4 n 5 DG 4 A CYT 5 n 6 DC 5 A GUA 6 n 7 DG 6 A n 1 6 B CYT 7 n 2 DC 7 B GUA 8 n 3 DG 8 B CYT 9 n 4 DC 9 B GUA 10 n 5 DG 10 B CYT 11 n 6 DC 11 B GUA 12 n 7 DG 12 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A P DC 1 A P DC 2 1 Y 1 A OP1 DC 1 A OP1 DC 2 1 Y 1 A OP2 DC 1 A OP2 DC 2 1 Y 1 B P DC 7 B P DC 2 1 Y 1 B OP1 DC 7 B OP1 DC 2 1 Y 1 B OP2 DC 7 B OP2 DC 2 1 Y 1 A DG 0 A DG 1 1 Y 1 B DG 6 B DG 1 1 Y 0.191 0.162 1.54 8.00 352 3537 87.8 random 1 isotropic 1.0 MOLECULAR REPLACEMENT 1.54 8.00 63 303 0 240 0 1.3 0.007 34.4 1.2 1.54 29.0 1M6R 3576 2.0 2.0 0.049 1 87.1 0.195 1.54 1.65 79.9 refinement CNS 1.1 Crystal structure of rGd(CGCGCG) forming hexamer Z-DNA duplex with 5'-(rG) overhang 1 N N 1 N N 2 N N 2 N N hydrog WATSON-CRICK A DC 1 A N3 DC 2 1_555 B DG 12 B N1 DG 7 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 2 1_555 B DG 12 B O6 DG 7 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 2 1_555 B DG 12 B N2 DG 7 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 3 1_555 B DC 11 B N3 DC 6 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 3 1_555 B DC 11 B O2 DC 6 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 3 1_555 B DC 11 B N4 DC 6 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 4 1_555 B DG 10 B N1 DG 5 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 4 1_555 B DG 10 B O6 DG 5 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 4 1_555 B DG 10 B N2 DG 5 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 5 1_555 B DC 9 B N3 DC 4 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 5 1_555 B DC 9 B O2 DC 4 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 5 1_555 B DC 9 B N4 DC 4 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 6 1_555 B DG 8 B N1 DG 3 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 6 1_555 B DG 8 B O6 DG 3 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 6 1_555 B DG 8 B N2 DG 3 1_555 hydrog WATSON-CRICK A DG 6 A N1 DG 7 1_555 B DC 7 B N3 DC 2 1_555 hydrog WATSON-CRICK A DG 6 A N2 DG 7 1_555 B DC 7 B O2 DC 2 1_555 hydrog WATSON-CRICK A DG 6 A O6 DG 7 1_555 B DC 7 B N4 DC 2 1_555 DNA Z-DNA, overhang, DNA 1M6R PDB 1 1M6R 0 6 1M6R 0 6 1M6R A 1 1 7 6 12 1M6R 6 12 1M6R B 1 1 7 19 P 21 21 21