0.055679
0.000000
0.000000
0.000000
0.031776
0.000000
0.000000
0.000000
0.022356
0.00000
0.00000
0.00000
Pan, B.
Sundaralingam, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.0
90.0
90.0
17.96
31.47
44.73
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
N
13
N
N
N
14
N
C
N
15
N
O
N
16
N
N
N
17
N
C
N
18
N
N
N
19
N
C
N
20
N
C
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
O
N
36
N
P
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
C
N
41
R
C
N
42
N
O
N
43
S
C
N
44
N
O
N
45
N
C
N
46
R
C
Y
47
N
N
Y
48
N
C
Y
49
N
N
Y
50
N
C
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
N
Y
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
H
N
74
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
Y
59
N
sing
Y
60
N
sing
Y
61
N
doub
N
62
N
sing
Y
63
N
sing
N
64
N
sing
Y
65
N
doub
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
59
433
437
10.1107/S0907444902022655
12595699
Crystal structure of rGd(CGCGCG): a Z-DNA hexamer duplex with a 5'-(rG) overhang.
2003
10.2210/pdb1m6r/pdb
pdb_00001m6r
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
mirrors
IMAGE PLATE
1997-05-08
RIGAKU RAXIS IIC
graphite
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
2139.411
5'-R(*G)D(*CP*GP*CP*GP*CP*G)-3'
2
syn
polymer
18.015
water
63
nat
water
no
no
(DG)(DC)(DG)(DC)(DG)(DC)(DG)
GCGCGCG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
1
VAPOR DIFFUSION, HANGING DROP
6.5
2-propanol (at reservoir), Spermine tetrachloride, magnesium chloride, cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
Spermine tetrachloride
1
MgCl2
1
cacodylate
1
2-propanol
2
MgCl2
2
0.442
1
19
A
1
B
12
1.421
A_DC1:DG12_B
1
0.289
-0.275
0.210
-0.093
-4.993
1
19
A
2
B
11
1.782
A_DG2:DC11_B
2
-2.390
0.262
-0.023
-0.103
2.205
1
19
A
3
B
10
1.188
A_DC3:DG10_B
3
-4.641
-0.261
0.180
-0.144
-7.916
1
19
A
4
B
9
2.226
A_DG4:DC9_B
4
-1.071
0.182
0.174
-0.090
-1.328
1
19
A
5
B
8
1.936
A_DC5:DG8_B
5
-0.072
-0.232
0.156
-0.075
4.778
1
19
A
6
B
7
2.599
A_DG6:DC7_B
6
3.273
0.214
0.322
-0.104
5.503
-7.325
A
A
1
2
24.517
B
B
12
11
3.660
-3.028
0.024
5.346
AA_DC1DG2:DC11DG12_BB
1
0.969
7.842
-6.600
-26.268
5.172
3.177
-50.825
A
A
2
3
6.595
B
B
11
10
3.319
-5.649
-0.200
-1.125
AA_DG2DC3:DG10DC11_BB
2
-1.404
-1.639
-50.513
1.705
-0.330
5.794
-7.493
A
A
3
4
24.826
B
B
10
9
3.890
-3.142
0.097
5.404
AA_DC3DG4:DC9DG10_BB
3
-0.438
-3.463
-6.789
-25.062
-1.526
3.394
-53.376
A
A
4
5
1.699
B
B
9
8
3.419
-1.526
-0.050
-0.931
AA_DG4DC5:DG8DC9_BB
4
0.623
0.694
-53.352
1.137
-0.014
3.739
-8.383
A
A
5
6
3.297
B
B
8
7
3.470
-0.481
0.062
5.122
AA_DC5DG6:DC7DG8_BB
5
0.739
5.064
-8.337
-33.621
2.596
software
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
1
0
2003-02-25
1
1
2008-04-28
1
2
2011-07-13
1
3
2017-10-11
1
4
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2002-07-17
REL
REL
HOH
water
WAT
101
2
HOH
HOH
101
A
WAT
102
2
HOH
HOH
102
A
WAT
113
2
HOH
HOH
113
A
WAT
114
2
HOH
HOH
114
A
WAT
115
2
HOH
HOH
115
A
WAT
116
2
HOH
HOH
116
A
WAT
117
2
HOH
HOH
117
A
WAT
118
2
HOH
HOH
118
A
WAT
119
2
HOH
HOH
119
A
WAT
121
2
HOH
HOH
121
A
WAT
123
2
HOH
HOH
123
A
WAT
124
2
HOH
HOH
124
A
WAT
127
2
HOH
HOH
127
A
WAT
128
2
HOH
HOH
128
A
WAT
134
2
HOH
HOH
134
A
WAT
135
2
HOH
HOH
135
A
WAT
136
2
HOH
HOH
136
A
WAT
137
2
HOH
HOH
137
A
WAT
139
2
HOH
HOH
139
A
WAT
140
2
HOH
HOH
140
A
WAT
148
2
HOH
HOH
148
A
WAT
149
2
HOH
HOH
149
A
WAT
150
2
HOH
HOH
150
A
WAT
151
2
HOH
HOH
151
A
WAT
152
2
HOH
HOH
152
A
WAT
161
2
HOH
HOH
161
A
WAT
103
2
HOH
HOH
103
B
WAT
104
2
HOH
HOH
104
B
WAT
105
2
HOH
HOH
105
B
WAT
106
2
HOH
HOH
106
B
WAT
107
2
HOH
HOH
107
B
WAT
108
2
HOH
HOH
108
B
WAT
109
2
HOH
HOH
109
B
WAT
110
2
HOH
HOH
110
B
WAT
111
2
HOH
HOH
111
B
WAT
112
2
HOH
HOH
112
B
WAT
120
2
HOH
HOH
120
B
WAT
122
2
HOH
HOH
122
B
WAT
125
2
HOH
HOH
125
B
WAT
126
2
HOH
HOH
126
B
WAT
129
2
HOH
HOH
129
B
WAT
130
2
HOH
HOH
130
B
WAT
131
2
HOH
HOH
131
B
WAT
132
2
HOH
HOH
132
B
WAT
133
2
HOH
HOH
133
B
WAT
138
2
HOH
HOH
138
B
WAT
141
2
HOH
HOH
141
B
WAT
142
2
HOH
HOH
142
B
WAT
143
2
HOH
HOH
143
B
WAT
144
2
HOH
HOH
144
B
WAT
145
2
HOH
HOH
145
B
WAT
146
2
HOH
HOH
146
B
WAT
147
2
HOH
HOH
147
B
WAT
153
2
HOH
HOH
153
B
WAT
154
2
HOH
HOH
154
B
WAT
155
2
HOH
HOH
155
B
WAT
156
2
HOH
HOH
156
B
WAT
157
2
HOH
HOH
157
B
WAT
158
2
HOH
HOH
158
B
WAT
159
2
HOH
HOH
159
B
WAT
160
2
HOH
HOH
160
B
WAT
162
2
HOH
HOH
162
B
WAT
163
2
HOH
HOH
163
B
n
1
0
A
CYT
1
n
2
DC
1
A
GUA
2
n
3
DG
2
A
CYT
3
n
4
DC
3
A
GUA
4
n
5
DG
4
A
CYT
5
n
6
DC
5
A
GUA
6
n
7
DG
6
A
n
1
6
B
CYT
7
n
2
DC
7
B
GUA
8
n
3
DG
8
B
CYT
9
n
4
DC
9
B
GUA
10
n
5
DG
10
B
CYT
11
n
6
DC
11
B
GUA
12
n
7
DG
12
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
P
DC
1
A
P
DC
2
1
Y
1
A
OP1
DC
1
A
OP1
DC
2
1
Y
1
A
OP2
DC
1
A
OP2
DC
2
1
Y
1
B
P
DC
7
B
P
DC
2
1
Y
1
B
OP1
DC
7
B
OP1
DC
2
1
Y
1
B
OP2
DC
7
B
OP2
DC
2
1
Y
1
A
DG
0
A
DG
1
1
Y
1
B
DG
6
B
DG
1
1
Y
0.191
0.162
1.54
8.00
352
3537
87.8
random
1
isotropic
1.0
MOLECULAR REPLACEMENT
1.54
8.00
63
303
0
240
0
1.3
0.007
34.4
1.2
1.54
29.0
1M6R
3576
2.0
2.0
0.049
1
87.1
0.195
1.54
1.65
79.9
refinement
CNS
1.1
Crystal structure of rGd(CGCGCG) forming hexamer Z-DNA duplex with 5'-(rG) overhang
1
N
N
1
N
N
2
N
N
2
N
N
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
2
1_555
B
DG
12
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
2
1_555
B
DG
12
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
2
1_555
B
DG
12
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
3
1_555
B
DC
11
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
3
1_555
B
DC
11
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
3
1_555
B
DC
11
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
4
1_555
B
DG
10
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
4
1_555
B
DG
10
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
4
1_555
B
DG
10
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
5
1_555
B
DC
9
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
5
1_555
B
DC
9
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
5
1_555
B
DC
9
B
N4
DC
4
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
6
1_555
B
DG
8
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
6
1_555
B
DG
8
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
6
1_555
B
DG
8
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
7
1_555
B
DC
7
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
7
1_555
B
DC
7
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
7
1_555
B
DC
7
B
N4
DC
2
1_555
DNA
Z-DNA, overhang, DNA
1M6R
PDB
1
1M6R
0
6
1M6R
0
6
1M6R
A
1
1
7
6
12
1M6R
6
12
1M6R
B
1
1
7
19
P 21 21 21