0.024213
0.000000
0.000000
0.000000
0.019106
0.000000
0.000000
0.000000
0.010661
0.00000
0.00000
0.00000
Chu, R.
Takei, J.
Knowlton, J.R.
Andrykovitch, M.
Pei, W.
Kajava, A.V.
Steinbach, P.J.
0000-0001-6942-1514
Ji, X.
Bai, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
41.300
52.340
93.800
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
S
N
291
N
O
N
292
N
O
N
293
N
O
N
294
N
O
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
R
C
N
300
N
O
N
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
N
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
N
350
N
O
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
N
368
N
C
N
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
doub
Y
313
N
sing
Y
314
N
sing
N
315
N
sing
Y
316
N
sing
Y
317
N
doub
N
318
N
sing
Y
319
N
doub
N
320
N
sing
Y
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
Y
336
N
doub
Y
337
N
sing
Y
338
N
sing
N
339
N
sing
Y
340
N
doub
N
341
N
sing
Y
342
N
doub
N
343
N
sing
Y
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
323
253
262
10.1016/S0022-2836(02)00884-7
12381319
Redesign of a Four-Helix Bundle Protein by Phage Display Coupled with Proteolysis
and Structural Characterization by NMR and X-ray Crystallography
2002
0000-0001-6942-1514
10.2210/pdb1m6t/pdb
pdb_00001m6t
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2000-02-02
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.0090
1.0
X9B
NSLS
1.0090
SYNCHROTRON
NSLS BEAMLINE X9B
11785.229
Soluble cytochrome b562
M7W,H102I,R106L
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
118
nat
water
Cytochrome b562
no
no
ADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLAN
EGKVKEAQAAAEQLKTTRNAYIQKYL
ADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLAN
EGKVKEAQAAAEQLKTTRNAYIQKYL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
Escherichia coli
sample
cytB562
562
Escherichia coli
469008
Escherichia coli BL21(DE3)
BL21DE3
Plasmid
Pet-17b
1
2.15
42.79
VAPOR DIFFUSION, SITTING DROP
9.0
3.2 M NH4(SO4), 2.44 mM N-octanoylsucrose, 0.1 M Bicine, pH 9.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
database_2
struct_ref_seq_dif
struct_site
audit_author
chem_comp_atom
chem_comp_bond
citation_author
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
Database references
Refinement description
Structure summary
1
0
2002-11-06
1
1
2008-04-28
1
2
2011-07-13
1
3
2021-10-27
1
4
2023-08-30
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_audit_author.identifier_ORCID
_citation_author.identifier_ORCID
Improvement of the 2.5 Angstroms Resolution Model of Cytochrome B562 by Redetermining
the Primary Structure and Using Molecular Graphics
RCSB
Y
RCSB
2002-07-17
REL
REL
SO4
SULFATE ION
HOH
water
256B
PDB ENTRY 256B
PDB
experimental model
SO4
200
2
SO4
SO4
200
A
TIP
201
3
HOH
HOH
201
A
TIP
202
3
HOH
HOH
202
A
TIP
203
3
HOH
HOH
203
A
TIP
204
3
HOH
HOH
204
A
TIP
205
3
HOH
HOH
205
A
TIP
206
3
HOH
HOH
206
A
TIP
207
3
HOH
HOH
207
A
TIP
208
3
HOH
HOH
208
A
TIP
209
3
HOH
HOH
209
A
TIP
210
3
HOH
HOH
210
A
TIP
211
3
HOH
HOH
211
A
TIP
212
3
HOH
HOH
212
A
TIP
213
3
HOH
HOH
213
A
TIP
214
3
HOH
HOH
214
A
TIP
215
3
HOH
HOH
215
A
TIP
216
3
HOH
HOH
216
A
TIP
217
3
HOH
HOH
217
A
TIP
218
3
HOH
HOH
218
A
TIP
219
3
HOH
HOH
219
A
TIP
220
3
HOH
HOH
220
A
TIP
221
3
HOH
HOH
221
A
TIP
222
3
HOH
HOH
222
A
TIP
223
3
HOH
HOH
223
A
TIP
224
3
HOH
HOH
224
A
TIP
225
3
HOH
HOH
225
A
TIP
226
3
HOH
HOH
226
A
TIP
227
3
HOH
HOH
227
A
TIP
228
3
HOH
HOH
228
A
TIP
229
3
HOH
HOH
229
A
TIP
230
3
HOH
HOH
230
A
TIP
231
3
HOH
HOH
231
A
TIP
232
3
HOH
HOH
232
A
TIP
233
3
HOH
HOH
233
A
TIP
234
3
HOH
HOH
234
A
TIP
235
3
HOH
HOH
235
A
TIP
236
3
HOH
HOH
236
A
TIP
237
3
HOH
HOH
237
A
TIP
238
3
HOH
HOH
238
A
TIP
239
3
HOH
HOH
239
A
TIP
240
3
HOH
HOH
240
A
TIP
241
3
HOH
HOH
241
A
TIP
242
3
HOH
HOH
242
A
TIP
243
3
HOH
HOH
243
A
TIP
244
3
HOH
HOH
244
A
TIP
245
3
HOH
HOH
245
A
TIP
246
3
HOH
HOH
246
A
TIP
247
3
HOH
HOH
247
A
TIP
248
3
HOH
HOH
248
A
TIP
249
3
HOH
HOH
249
A
TIP
250
3
HOH
HOH
250
A
TIP
251
3
HOH
HOH
251
A
TIP
252
3
HOH
HOH
252
A
TIP
253
3
HOH
HOH
253
A
TIP
254
3
HOH
HOH
254
A
TIP
255
3
HOH
HOH
255
A
TIP
256
3
HOH
HOH
256
A
TIP
257
3
HOH
HOH
257
A
TIP
258
3
HOH
HOH
258
A
TIP
259
3
HOH
HOH
259
A
TIP
260
3
HOH
HOH
260
A
TIP
261
3
HOH
HOH
261
A
TIP
262
3
HOH
HOH
262
A
TIP
263
3
HOH
HOH
263
A
TIP
264
3
HOH
HOH
264
A
TIP
265
3
HOH
HOH
265
A
TIP
266
3
HOH
HOH
266
A
TIP
267
3
HOH
HOH
267
A
TIP
268
3
HOH
HOH
268
A
TIP
269
3
HOH
HOH
269
A
TIP
270
3
HOH
HOH
270
A
TIP
271
3
HOH
HOH
271
A
TIP
272
3
HOH
HOH
272
A
TIP
273
3
HOH
HOH
273
A
TIP
274
3
HOH
HOH
274
A
TIP
275
3
HOH
HOH
275
A
TIP
276
3
HOH
HOH
276
A
TIP
277
3
HOH
HOH
277
A
TIP
278
3
HOH
HOH
278
A
TIP
279
3
HOH
HOH
279
A
TIP
280
3
HOH
HOH
280
A
TIP
281
3
HOH
HOH
281
A
TIP
282
3
HOH
HOH
282
A
TIP
283
3
HOH
HOH
283
A
TIP
284
3
HOH
HOH
284
A
TIP
285
3
HOH
HOH
285
A
TIP
286
3
HOH
HOH
286
A
TIP
287
3
HOH
HOH
287
A
TIP
288
3
HOH
HOH
288
A
TIP
289
3
HOH
HOH
289
A
TIP
290
3
HOH
HOH
290
A
TIP
291
3
HOH
HOH
291
A
TIP
292
3
HOH
HOH
292
A
TIP
293
3
HOH
HOH
293
A
TIP
294
3
HOH
HOH
294
A
TIP
295
3
HOH
HOH
295
A
TIP
296
3
HOH
HOH
296
A
TIP
297
3
HOH
HOH
297
A
TIP
298
3
HOH
HOH
298
A
TIP
299
3
HOH
HOH
299
A
TIP
300
3
HOH
HOH
300
A
TIP
301
3
HOH
HOH
301
A
TIP
302
3
HOH
HOH
302
A
TIP
303
3
HOH
HOH
303
A
TIP
304
3
HOH
HOH
304
A
TIP
305
3
HOH
HOH
305
A
TIP
306
3
HOH
HOH
306
A
TIP
307
3
HOH
HOH
307
A
TIP
308
3
HOH
HOH
308
A
TIP
309
3
HOH
HOH
309
A
TIP
310
3
HOH
HOH
310
A
TIP
311
3
HOH
HOH
311
A
TIP
312
3
HOH
HOH
312
A
TIP
313
3
HOH
HOH
313
A
TIP
314
3
HOH
HOH
314
A
TIP
315
3
HOH
HOH
315
A
TIP
316
3
HOH
HOH
316
A
TIP
317
3
HOH
HOH
317
A
TIP
318
3
HOH
HOH
318
A
ALA
1
n
1
ALA
1
A
ASP
2
n
2
ASP
2
A
LEU
3
n
3
LEU
3
A
GLU
4
n
4
GLU
4
A
ASP
5
n
5
ASP
5
A
ASN
6
n
6
ASN
6
A
TRP
7
n
7
TRP
7
A
GLU
8
n
8
GLU
8
A
THR
9
n
9
THR
9
A
LEU
10
n
10
LEU
10
A
ASN
11
n
11
ASN
11
A
ASP
12
n
12
ASP
12
A
ASN
13
n
13
ASN
13
A
LEU
14
n
14
LEU
14
A
LYS
15
n
15
LYS
15
A
VAL
16
n
16
VAL
16
A
ILE
17
n
17
ILE
17
A
GLU
18
n
18
GLU
18
A
LYS
19
n
19
LYS
19
A
ALA
20
n
20
ALA
20
A
ASP
21
n
21
ASP
21
A
ASN
22
n
22
ASN
22
A
ALA
23
n
23
ALA
23
A
ALA
24
n
24
ALA
24
A
GLN
25
n
25
GLN
25
A
VAL
26
n
26
VAL
26
A
LYS
27
n
27
LYS
27
A
ASP
28
n
28
ASP
28
A
ALA
29
n
29
ALA
29
A
LEU
30
n
30
LEU
30
A
THR
31
n
31
THR
31
A
LYS
32
n
32
LYS
32
A
MET
33
n
33
MET
33
A
ARG
34
n
34
ARG
34
A
ALA
35
n
35
ALA
35
A
ALA
36
n
36
ALA
36
A
ALA
37
n
37
ALA
37
A
LEU
38
n
38
LEU
38
A
ASP
39
n
39
ASP
39
A
ALA
40
n
40
ALA
40
A
GLN
41
n
41
GLN
41
A
LYS
42
n
42
LYS
42
A
ALA
43
n
43
ALA
43
A
THR
44
n
44
THR
44
A
PRO
45
n
45
PRO
45
A
PRO
46
n
46
PRO
46
A
LYS
47
n
47
LYS
47
A
LEU
48
n
48
LEU
48
A
GLU
49
n
49
GLU
49
A
ASP
50
n
50
ASP
50
A
LYS
51
n
51
LYS
51
A
SER
52
n
52
SER
52
A
PRO
53
n
53
PRO
53
A
ASP
54
n
54
ASP
54
A
SER
55
n
55
SER
55
A
PRO
56
n
56
PRO
56
A
GLU
57
n
57
GLU
57
A
MET
58
n
58
MET
58
A
LYS
59
n
59
LYS
59
A
ASP
60
n
60
ASP
60
A
PHE
61
n
61
PHE
61
A
ARG
62
n
62
ARG
62
A
HIS
63
n
63
HIS
63
A
GLY
64
n
64
GLY
64
A
PHE
65
n
65
PHE
65
A
ASP
66
n
66
ASP
66
A
ILE
67
n
67
ILE
67
A
LEU
68
n
68
LEU
68
A
VAL
69
n
69
VAL
69
A
GLY
70
n
70
GLY
70
A
GLN
71
n
71
GLN
71
A
ILE
72
n
72
ILE
72
A
ASP
73
n
73
ASP
73
A
ASP
74
n
74
ASP
74
A
ALA
75
n
75
ALA
75
A
LEU
76
n
76
LEU
76
A
LYS
77
n
77
LYS
77
A
LEU
78
n
78
LEU
78
A
ALA
79
n
79
ALA
79
A
ASN
80
n
80
ASN
80
A
GLU
81
n
81
GLU
81
A
GLY
82
n
82
GLY
82
A
LYS
83
n
83
LYS
83
A
VAL
84
n
84
VAL
84
A
LYS
85
n
85
LYS
85
A
GLU
86
n
86
GLU
86
A
ALA
87
n
87
ALA
87
A
GLN
88
n
88
GLN
88
A
ALA
89
n
89
ALA
89
A
ALA
90
n
90
ALA
90
A
ALA
91
n
91
ALA
91
A
GLU
92
n
92
GLU
92
A
GLN
93
n
93
GLN
93
A
LEU
94
n
94
LEU
94
A
LYS
95
n
95
LYS
95
A
THR
96
n
96
THR
96
A
THR
97
n
97
THR
97
A
ARG
98
n
98
ARG
98
A
ASN
99
n
99
ASN
99
A
ALA
100
n
100
ALA
100
A
TYR
101
n
101
TYR
101
A
ILE
102
n
102
ILE
102
A
GLN
103
n
103
GLN
103
A
LYS
104
n
104
LYS
104
A
TYR
105
n
105
TYR
105
A
LEU
106
n
106
LEU
106
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
HOH
317
C
HOH
1
A
HOH
318
C
HOH
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
38.8
0.92
0.00
0.00
-2.31
0.00
1.39
0.2480000
0.011
0.2100000
1.81
18.90
485
9252
9252
5.2
95.9
RANDOM
505897.88
505897.88
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 256B
Engh & Huber
FLAT MODEL
58.0863
0.35708
0.28
0.23
19.0
0.25
0.22
1.81
18.90
118
950
5
0
827
0.005
1.0
17.1
0.83
1.43
1.50
2.26
2.00
2.77
2.00
4.35
2.50
0.3440000
0.041
0.3230000
1.91
69
1188
1188
6
5.5
79.0
32.0
1.81
18.90
1M6T
9252
9252
0.0
-3.00
0.3000000
0.0300000
1
46.1
5.0
95.9
0.5330000
1.81
1.86
2.9
749
0.5330000
76.8
data collection
HKL-2000
data scaling
SCALEPACK
refinement
CNS
data reduction
HKL-2000
phasing
CNS
CRYSTAL STRUCTURE OF B562RIL, A REDESIGNED FOUR HELIX BUNDLE
1
N
N
2
N
N
3
N
N
A
ASP
2
A
ASP
2
HELX_P
A
ALA
20
A
ALA
20
1
1
19
A
ASN
22
A
ASN
22
HELX_P
A
GLN
41
A
GLN
41
1
2
20
A
PRO
45
A
PRO
45
HELX_P
A
GLU
49
A
GLU
49
5
3
5
A
SER
55
A
SER
55
HELX_P
A
GLU
81
A
GLU
81
1
4
27
A
LYS
83
A
LYS
83
HELX_P
A
GLU
92
A
GLU
92
1
5
10
A
GLN
93
A
GLN
93
HELX_P
A
ILE
102
A
ILE
102
1
6
10
A
GLN
103
A
GLN
103
HELX_P
A
LEU
106
A
LEU
106
5
7
4
ELECTRON TRANSPORT
protein design, ELECTRON TRANSPORT
C562_ECOLI
UNP
1
23
P0ABE7
ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLAN
EGKVKEAQAAAEQLKTTRNAYHQKYR
23
128
1M6T
1
106
P0ABE7
A
1
1
106
1
MET
engineered mutation
TRP
7
1M6T
A
P0ABE7
UNP
29
7
1
HIS
engineered mutation
ILE
102
1M6T
A
P0ABE7
UNP
124
102
1
ARG
engineered mutation
LEU
106
1M6T
A
P0ABE7
UNP
128
106
BINDING SITE FOR RESIDUE SO4 A 200
A
SO4
200
Software
4
A
LYS
59
A
LYS
59
4
1_555
A
ARG
62
A
ARG
62
4
1_555
A
HOH
227
C
HOH
4
1_555
A
HOH
302
C
HOH
4
1_555
20
C 2 2 21