0.014182
0.000000
0.000000
0.000000
0.014182
0.000000
0.000000
0.000000
0.004924
0.00000
0.00000
0.00000
Vyas, N.K.
Vyas, M.N.
Chervenak, M.C.
Johnson, M.A.
Pinto, B.M.
Bundle, D.R.
Quiocho, F.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
70.510
70.510
203.100
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C6 H12 O5
164.156
alpha-L-rhamnopyranose
L-saccharide, alpha linking
C7 H14 O5
178.183
n
methyl 6-deoxy-alpha-L-rhamnopyranoside
L-saccharide
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
41
13575
13586
10.1021/bi0261387
12427018
Molecular Recognition of Oligosaccharide Epitopes by a Monoclonal Fab Specific for
Shigella flexneri Y Lipopolysaccharide: X-ray Structures and Thermodynamics
2002
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
231
133
136
10.1006/jmbi.1993.1262
Preliminary Crystallographic Analysis of a Fab Specific for the O-antigen of Shigella flexneri
Cell Surface Lipoplysacharide with and and without Bound Saccharides
1993
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
281
1
hoton Factory BL6A2
IMAGE PLATE
1990-06-02
FUJI
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
BL-6A
Photon Factory
1.0
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6A
23717.350
light chain of the monoclonal antibody Fab SYA/J6
1
man
polymer
23547.361
heavy chain of the monoclonal antibody Fab SYA/J6
1
man
polymer
819.798
alpha-L-rhamnopyranose-(1-2)-alpha-L-rhamnopyranose-(1-3)-alpha-L-rhamnopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-methyl 6-deoxy-alpha-L-rhamnopyranoside
1
man
branched
18.015
water
170
nat
water
no
no
DVVLTQTPLSLPVRLGDQASISCRSSQSLLHSDGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYFCSQTTHVPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ
NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
DVVLTQTPLSLPVRLGDQASISCRSSQSLLHSDGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYFCSQTTHVPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ
NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
A
polypeptide(L)
no
no
EVKVEESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSS
VYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVK
WNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKVDLIKEPSGP
EVKVEESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSS
VYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVK
WNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKVDLIKEPSGP
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Balb/C
Escherichia
sample
Plasmacytoma cell
SYA/J6 hybridoma
10090
Spleen
Mus musculus
562
Escherichia coli
house mouse
Mus
Balb/C
Escherichia
sample
Plasmacytoma cell
SYA/J6 hybridoma
10090
Spleen
Mus musculus
562
Escherichia coli
1
2.67
53.92
VAPOR DIFFUSION
6.5
MPD, potassium phosphate, pH 6.5, VAPOR DIFFUSION, temperature 277K
277
software
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Refinement description
Atomic model
Data collection
Derived calculations
Structure summary
1
0
2003-07-22
1
1
2008-04-28
1
2
2011-07-13
1
3
2017-10-11
2
0
2020-07-29
_software.name
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
RHB
5
n
C
RAO
1
NAG
4
n
C
NAG
2
RHA
3
n
C
RAM
3
RHA
2
n
C
RAM
4
RHA
1
n
C
RAM
5
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
LRhapa
a-L-rhamnopyranose
a-L-Rhap
Rha
LRhap[1Me]a
1-methyl-a-L-rhamnoopyranose
1-O-methyl-a-rhamnose
Phosphocholine binding immunoglobulin Fab McPC603. An X-ray diffraction study at 2.7 A
Crystal structure of a Monoclonal Fab Specific for Shigella flexneri
Y Lipopolysaccharide complexed with a pentasaccharide
Crystal structure of a Monoclonal Fab Specific for Shigella flexneri
Y Lipopolysaccharide complexed with a trisaccharide
SEQUENCE
At the time of processing, this sequence of chain A and chain B have not yet been deposited in a sequence database.
RCSB
Y
RCSB
2002-07-19
REL
oligosaccharide
LRhapa1-2LRhapa1-3LRhapa1-3DGlcpNAcb1-2LRhap[1Me]a1-OME
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/3,5,4/[a2211m-1a_1-5_1*OC][a2122h-1b_1-5_2*NCC/3=O][a2211m-1a_1-5]/1-2-3-3-3/a2-b1_b3-c1_c3-d1_d2-e1
3
PDB2Glycan
1.1.0
WURCS
[][methyl]{[(1+1)][a-L-Rhap]{[(2+1)][b-D-GlcpNAc]{[(3+1)][a-L-Rhap]{[(3+1)][a-L-Rhap]{[(2+1)][a-L-Rhap]{}}}}}}
3
PDB-CARE
LINUCS
C1
O2
NAG
RAO
2
1
3
O1
HO2
sing
C1
O3
RAM
NAG
3
2
3
O1
HO3
sing
C1
O3
RAM
RAM
4
3
3
O1
HO3
sing
C1
O2
RAM
RAM
5
4
3
O1
HO2
sing
n
n
n
n
n
HOH
water
TIP
1
4
HOH
HOH
217
A
TIP
2
4
HOH
HOH
218
A
TIP
4
4
HOH
HOH
219
A
TIP
5
4
HOH
HOH
220
A
TIP
6
4
HOH
HOH
221
A
TIP
8
4
HOH
HOH
222
A
TIP
11
4
HOH
HOH
223
A
TIP
14
4
HOH
HOH
224
A
TIP
15
4
HOH
HOH
225
A
TIP
16
4
HOH
HOH
226
A
TIP
17
4
HOH
HOH
227
A
TIP
18
4
HOH
HOH
228
A
TIP
21
4
HOH
HOH
229
A
TIP
23
4
HOH
HOH
230
A
TIP
24
4
HOH
HOH
231
A
TIP
26
4
HOH
HOH
232
A
TIP
27
4
HOH
HOH
233
A
TIP
28
4
HOH
HOH
234
A
TIP
30
4
HOH
HOH
235
A
TIP
33
4
HOH
HOH
236
A
TIP
36
4
HOH
HOH
237
A
TIP
38
4
HOH
HOH
238
A
TIP
40
4
HOH
HOH
239
A
TIP
50
4
HOH
HOH
240
A
TIP
51
4
HOH
HOH
241
A
TIP
52
4
HOH
HOH
242
A
TIP
53
4
HOH
HOH
243
A
TIP
54
4
HOH
HOH
244
A
TIP
55
4
HOH
HOH
245
A
TIP
56
4
HOH
HOH
246
A
TIP
57
4
HOH
HOH
247
A
TIP
59
4
HOH
HOH
248
A
TIP
61
4
HOH
HOH
249
A
TIP
64
4
HOH
HOH
250
A
TIP
65
4
HOH
HOH
251
A
TIP
69
4
HOH
HOH
252
A
TIP
70
4
HOH
HOH
253
A
TIP
71
4
HOH
HOH
254
A
TIP
72
4
HOH
HOH
255
A
TIP
75
4
HOH
HOH
256
A
TIP
76
4
HOH
HOH
257
A
TIP
77
4
HOH
HOH
258
A
TIP
80
4
HOH
HOH
259
A
TIP
83
4
HOH
HOH
260
A
TIP
85
4
HOH
HOH
261
A
TIP
86
4
HOH
HOH
262
A
TIP
87
4
HOH
HOH
263
A
TIP
88
4
HOH
HOH
264
A
TIP
89
4
HOH
HOH
265
A
TIP
90
4
HOH
HOH
266
A
TIP
91
4
HOH
HOH
267
A
TIP
93
4
HOH
HOH
268
A
TIP
94
4
HOH
HOH
269
A
TIP
96
4
HOH
HOH
270
A
TIP
97
4
HOH
HOH
271
A
TIP
100
4
HOH
HOH
272
A
TIP
102
4
HOH
HOH
273
A
TIP
108
4
HOH
HOH
274
A
TIP
109
4
HOH
HOH
275
A
TIP
110
4
HOH
HOH
276
A
TIP
111
4
HOH
HOH
277
A
TIP
113
4
HOH
HOH
278
A
TIP
118
4
HOH
HOH
279
A
TIP
120
4
HOH
HOH
280
A
TIP
121
4
HOH
HOH
281
A
TIP
123
4
HOH
HOH
282
A
TIP
124
4
HOH
HOH
283
A
TIP
125
4
HOH
HOH
284
A
TIP
130
4
HOH
HOH
285
A
TIP
132
4
HOH
HOH
286
A
TIP
139
4
HOH
HOH
287
A
TIP
140
4
HOH
HOH
288
A
TIP
141
4
HOH
HOH
289
A
TIP
142
4
HOH
HOH
290
A
TIP
143
4
HOH
HOH
291
A
TIP
145
4
HOH
HOH
292
A
TIP
146
4
HOH
HOH
293
A
TIP
150
4
HOH
HOH
294
A
TIP
153
4
HOH
HOH
295
A
TIP
156
4
HOH
HOH
296
A
TIP
157
4
HOH
HOH
297
A
TIP
158
4
HOH
HOH
298
A
TIP
159
4
HOH
HOH
299
A
TIP
162
4
HOH
HOH
300
A
TIP
164
4
HOH
HOH
301
A
TIP
165
4
HOH
HOH
302
A
TIP
167
4
HOH
HOH
303
A
TIP
168
4
HOH
HOH
304
A
TIP
169
4
HOH
HOH
305
A
TIP
171
4
HOH
HOH
306
A
TIP
3
4
HOH
HOH
214
B
TIP
7
4
HOH
HOH
215
B
TIP
9
4
HOH
HOH
216
B
TIP
10
4
HOH
HOH
217
B
TIP
12
4
HOH
HOH
218
B
TIP
13
4
HOH
HOH
219
B
TIP
19
4
HOH
HOH
220
B
TIP
20
4
HOH
HOH
221
B
TIP
22
4
HOH
HOH
222
B
TIP
25
4
HOH
HOH
223
B
TIP
29
4
HOH
HOH
224
B
TIP
31
4
HOH
HOH
225
B
TIP
32
4
HOH
HOH
226
B
TIP
34
4
HOH
HOH
227
B
TIP
35
4
HOH
HOH
228
B
TIP
37
4
HOH
HOH
229
B
TIP
39
4
HOH
HOH
230
B
TIP
41
4
HOH
HOH
231
B
TIP
42
4
HOH
HOH
232
B
TIP
43
4
HOH
HOH
233
B
TIP
44
4
HOH
HOH
234
B
TIP
45
4
HOH
HOH
235
B
TIP
46
4
HOH
HOH
236
B
TIP
47
4
HOH
HOH
237
B
TIP
48
4
HOH
HOH
238
B
TIP
49
4
HOH
HOH
239
B
TIP
58
4
HOH
HOH
240
B
TIP
60
4
HOH
HOH
241
B
TIP
62
4
HOH
HOH
242
B
TIP
63
4
HOH
HOH
243
B
TIP
66
4
HOH
HOH
244
B
TIP
67
4
HOH
HOH
245
B
TIP
68
4
HOH
HOH
246
B
TIP
73
4
HOH
HOH
247
B
TIP
74
4
HOH
HOH
248
B
TIP
78
4
HOH
HOH
249
B
TIP
79
4
HOH
HOH
250
B
TIP
81
4
HOH
HOH
251
B
TIP
82
4
HOH
HOH
252
B
TIP
84
4
HOH
HOH
253
B
TIP
92
4
HOH
HOH
254
B
TIP
95
4
HOH
HOH
255
B
TIP
98
4
HOH
HOH
256
B
TIP
99
4
HOH
HOH
257
B
TIP
101
4
HOH
HOH
258
B
TIP
103
4
HOH
HOH
259
B
TIP
104
4
HOH
HOH
260
B
TIP
105
4
HOH
HOH
261
B
TIP
106
4
HOH
HOH
262
B
TIP
107
4
HOH
HOH
263
B
TIP
112
4
HOH
HOH
264
B
TIP
114
4
HOH
HOH
265
B
TIP
115
4
HOH
HOH
266
B
TIP
116
4
HOH
HOH
267
B
TIP
117
4
HOH
HOH
268
B
TIP
119
4
HOH
HOH
269
B
TIP
122
4
HOH
HOH
270
B
TIP
126
4
HOH
HOH
271
B
TIP
127
4
HOH
HOH
272
B
TIP
128
4
HOH
HOH
273
B
TIP
129
4
HOH
HOH
274
B
TIP
131
4
HOH
HOH
275
B
TIP
133
4
HOH
HOH
276
B
TIP
134
4
HOH
HOH
277
B
TIP
135
4
HOH
HOH
278
B
TIP
136
4
HOH
HOH
279
B
TIP
137
4
HOH
HOH
280
B
TIP
138
4
HOH
HOH
281
B
TIP
144
4
HOH
HOH
282
B
TIP
147
4
HOH
HOH
283
B
TIP
148
4
HOH
HOH
284
B
TIP
149
4
HOH
HOH
285
B
TIP
151
4
HOH
HOH
286
B
TIP
152
4
HOH
HOH
287
B
TIP
154
4
HOH
HOH
288
B
TIP
155
4
HOH
HOH
289
B
TIP
161
4
HOH
HOH
290
B
TIP
163
4
HOH
HOH
291
B
TIP
166
4
HOH
HOH
292
B
TIP
170
4
HOH
HOH
293
B
ASP
1
n
1
ASP
1
A
VAL
2
n
2
VAL
2
A
VAL
3
n
3
VAL
3
A
LEU
4
n
4
LEU
4
A
THR
5
n
5
THR
5
A
GLN
6
n
6
GLN
6
A
THR
7
n
7
THR
7
A
PRO
8
n
8
PRO
8
A
LEU
9
n
9
LEU
9
A
SER
10
n
10
SER
10
A
LEU
11
n
11
LEU
11
A
PRO
12
n
12
PRO
12
A
VAL
13
n
13
VAL
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
GLY
16
n
16
GLY
16
A
ASP
17
n
17
ASP
17
A
GLN
18
n
18
GLN
18
A
ALA
19
n
19
ALA
19
A
SER
20
n
20
SER
20
A
ILE
21
n
21
ILE
21
A
SER
22
n
22
SER
22
A
CYS
23
n
23
CYS
23
A
ARG
24
n
24
ARG
24
A
SER
25
n
25
SER
25
A
SER
26
n
26
SER
26
A
GLN
27
n
27
GLN
27
A
SER
27
n
28
A
SER
27
A
LEU
27
n
29
B
LEU
27
A
LEU
27
n
30
C
LEU
27
A
HIS
27
n
31
D
HIS
27
A
SER
27
n
32
E
SER
27
A
ASP
28
n
33
ASP
28
A
GLY
29
n
34
GLY
29
A
ASN
30
n
35
ASN
30
A
THR
31
n
36
THR
31
A
TYR
32
n
37
TYR
32
A
LEU
33
n
38
LEU
33
A
HIS
34
n
39
HIS
34
A
TRP
35
n
40
TRP
35
A
TYR
36
n
41
TYR
36
A
LEU
37
n
42
LEU
37
A
GLN
38
n
43
GLN
38
A
LYS
39
n
44
LYS
39
A
PRO
40
n
45
PRO
40
A
GLY
41
n
46
GLY
41
A
GLN
42
n
47
GLN
42
A
SER
43
n
48
SER
43
A
PRO
44
n
49
PRO
44
A
LYS
45
n
50
LYS
45
A
LEU
46
n
51
LEU
46
A
LEU
47
n
52
LEU
47
A
ILE
48
n
53
ILE
48
A
TYR
49
n
54
TYR
49
A
LYS
50
n
55
LYS
50
A
VAL
51
n
56
VAL
51
A
SER
52
n
57
SER
52
A
ASN
53
n
58
ASN
53
A
ARG
54
n
59
ARG
54
A
PHE
55
n
60
PHE
55
A
SER
56
n
61
SER
56
A
GLY
57
n
62
GLY
57
A
VAL
58
n
63
VAL
58
A
PRO
59
n
64
PRO
59
A
ASP
60
n
65
ASP
60
A
ARG
61
n
66
ARG
61
A
PHE
62
n
67
PHE
62
A
SER
63
n
68
SER
63
A
GLY
64
n
69
GLY
64
A
SER
65
n
70
SER
65
A
GLY
66
n
71
GLY
66
A
SER
67
n
72
SER
67
A
GLY
68
n
73
GLY
68
A
THR
69
n
74
THR
69
A
ASP
70
n
75
ASP
70
A
PHE
71
n
76
PHE
71
A
THR
72
n
77
THR
72
A
LEU
73
n
78
LEU
73
A
LYS
74
n
79
LYS
74
A
ILE
75
n
80
ILE
75
A
SER
76
n
81
SER
76
A
ARG
77
n
82
ARG
77
A
VAL
78
n
83
VAL
78
A
GLU
79
n
84
GLU
79
A
ALA
80
n
85
ALA
80
A
GLU
81
n
86
GLU
81
A
ASP
82
n
87
ASP
82
A
LEU
83
n
88
LEU
83
A
GLY
84
n
89
GLY
84
A
VAL
85
n
90
VAL
85
A
TYR
86
n
91
TYR
86
A
PHE
87
n
92
PHE
87
A
CYS
88
n
93
CYS
88
A
SER
89
n
94
SER
89
A
GLN
90
n
95
GLN
90
A
THR
91
n
96
THR
91
A
THR
92
n
97
THR
92
A
HIS
93
n
98
HIS
93
A
VAL
94
n
99
VAL
94
A
PRO
95
n
100
PRO
95
A
THR
97
n
101
THR
97
A
PHE
98
n
102
PHE
98
A
GLY
99
n
103
GLY
99
A
GLY
100
n
104
GLY
100
A
GLY
101
n
105
GLY
101
A
THR
102
n
106
THR
102
A
LYS
103
n
107
LYS
103
A
LEU
104
n
108
LEU
104
A
GLU
105
n
109
GLU
105
A
ILE
106
n
110
ILE
106
A
LYS
107
n
111
LYS
107
A
ARG
108
n
112
ARG
108
A
ALA
109
n
113
ALA
109
A
ASP
110
n
114
ASP
110
A
ALA
111
n
115
ALA
111
A
ALA
112
n
116
ALA
112
A
PRO
113
n
117
PRO
113
A
THR
114
n
118
THR
114
A
VAL
115
n
119
VAL
115
A
SER
116
n
120
SER
116
A
ILE
117
n
121
ILE
117
A
PHE
118
n
122
PHE
118
A
PRO
119
n
123
PRO
119
A
PRO
120
n
124
PRO
120
A
SER
121
n
125
SER
121
A
SER
122
n
126
SER
122
A
GLU
123
n
127
GLU
123
A
GLN
124
n
128
GLN
124
A
LEU
125
n
129
LEU
125
A
THR
126
n
130
THR
126
A
SER
127
n
131
SER
127
A
GLY
128
n
132
GLY
128
A
GLY
129
n
133
GLY
129
A
ALA
130
n
134
ALA
130
A
SER
131
n
135
SER
131
A
VAL
132
n
136
VAL
132
A
VAL
133
n
137
VAL
133
A
CYS
134
n
138
CYS
134
A
PHE
135
n
139
PHE
135
A
LEU
136
n
140
LEU
136
A
ASN
137
n
141
ASN
137
A
ASN
138
n
142
ASN
138
A
PHE
139
n
143
PHE
139
A
TYR
140
n
144
TYR
140
A
PRO
141
n
145
PRO
141
A
LYS
142
n
146
LYS
142
A
ASP
143
n
147
ASP
143
A
ILE
144
n
148
ILE
144
A
ASN
145
n
149
ASN
145
A
VAL
146
n
150
VAL
146
A
LYS
147
n
151
LYS
147
A
TRP
148
n
152
TRP
148
A
LYS
149
n
153
LYS
149
A
ILE
150
n
154
ILE
150
A
ASP
151
n
155
ASP
151
A
GLY
152
n
156
GLY
152
A
SER
153
n
157
SER
153
A
GLU
154
n
158
GLU
154
A
ARG
155
n
159
ARG
155
A
GLN
156
n
160
GLN
156
A
ASN
157
n
161
ASN
157
A
GLY
158
n
162
GLY
158
A
VAL
159
n
163
VAL
159
A
LEU
160
n
164
LEU
160
A
ASN
161
n
165
ASN
161
A
SER
162
n
166
SER
162
A
TRP
163
n
167
TRP
163
A
THR
164
n
168
THR
164
A
ASP
165
n
169
ASP
165
A
GLN
166
n
170
GLN
166
A
ASP
167
n
171
ASP
167
A
SER
168
n
172
SER
168
A
LYS
169
n
173
LYS
169
A
ASP
170
n
174
ASP
170
A
SER
171
n
175
SER
171
A
THR
172
n
176
THR
172
A
TYR
173
n
177
TYR
173
A
SER
174
n
178
SER
174
A
MET
175
n
179
MET
175
A
SER
176
n
180
SER
176
A
SER
177
n
181
SER
177
A
THR
178
n
182
THR
178
A
LEU
179
n
183
LEU
179
A
THR
180
n
184
THR
180
A
LEU
181
n
185
LEU
181
A
THR
182
n
186
THR
182
A
LYS
183
n
187
LYS
183
A
ASP
184
n
188
ASP
184
A
GLU
185
n
189
GLU
185
A
TYR
186
n
190
TYR
186
A
GLU
187
n
191
GLU
187
A
ARG
188
n
192
ARG
188
A
HIS
189
n
193
HIS
189
A
ASN
190
n
194
ASN
190
A
SER
191
n
195
SER
191
A
TYR
192
n
196
TYR
192
A
THR
193
n
197
THR
193
A
CYS
194
n
198
CYS
194
A
GLU
195
n
199
GLU
195
A
ALA
196
n
200
ALA
196
A
THR
197
n
201
THR
197
A
HIS
198
n
202
HIS
198
A
LYS
199
n
203
LYS
199
A
THR
200
n
204
THR
200
A
SER
201
n
205
SER
201
A
THR
202
n
206
THR
202
A
SER
203
n
207
SER
203
A
PRO
204
n
208
PRO
204
A
ILE
205
n
209
ILE
205
A
VAL
206
n
210
VAL
206
A
LYS
207
n
211
LYS
207
A
SER
208
n
212
SER
208
A
PHE
209
n
213
PHE
209
A
ASN
210
n
214
ASN
210
A
ARG
211
n
215
ARG
211
A
GLU
1
n
1
GLU
1
B
VAL
2
n
2
VAL
2
B
LYS
3
n
3
LYS
3
B
VAL
4
n
4
VAL
4
B
GLU
5
n
5
GLU
5
B
GLU
6
n
6
GLU
6
B
SER
7
n
7
SER
7
B
GLY
8
n
8
GLY
8
B
GLY
9
n
9
GLY
9
B
GLY
10
n
10
GLY
10
B
LEU
11
n
11
LEU
11
B
VAL
12
n
12
VAL
12
B
GLN
13
n
13
GLN
13
B
PRO
14
n
14
PRO
14
B
GLY
15
n
15
GLY
15
B
GLY
16
n
16
GLY
16
B
SER
17
n
17
SER
17
B
MET
18
n
18
MET
18
B
LYS
19
n
19
LYS
19
B
LEU
20
n
20
LEU
20
B
SER
21
n
21
SER
21
B
CYS
22
n
22
CYS
22
B
VAL
23
n
23
VAL
23
B
ALA
24
n
24
ALA
24
B
SER
25
n
25
SER
25
B
GLY
26
n
26
GLY
26
B
PHE
27
n
27
PHE
27
B
THR
28
n
28
THR
28
B
PHE
29
n
29
PHE
29
B
SER
30
n
30
SER
30
B
ASN
31
n
31
ASN
31
B
TYR
32
n
32
TYR
32
B
TRP
33
n
33
TRP
33
B
MET
34
n
34
MET
34
B
GLU
35
n
35
GLU
35
B
TRP
36
n
36
TRP
36
B
VAL
37
n
37
VAL
37
B
ARG
38
n
38
ARG
38
B
GLN
39
n
39
GLN
39
B
SER
40
n
40
SER
40
B
PRO
41
n
41
PRO
41
B
GLU
42
n
42
GLU
42
B
LYS
43
n
43
LYS
43
B
GLY
44
n
44
GLY
44
B
LEU
45
n
45
LEU
45
B
GLU
46
n
46
GLU
46
B
TRP
47
n
47
TRP
47
B
VAL
48
n
48
VAL
48
B
ALA
49
n
49
ALA
49
B
GLU
50
n
50
GLU
50
B
ILE
51
n
51
ILE
51
B
ARG
52
n
52
ARG
52
B
LEU
52
n
53
A
LEU
52
B
LYS
52
n
54
B
LYS
52
B
SER
52
n
55
C
SER
52
B
ASN
53
n
56
ASN
53
B
ASN
54
n
57
ASN
54
B
TYR
55
n
58
TYR
55
B
ALA
56
n
59
ALA
56
B
THR
57
n
60
THR
57
B
HIS
58
n
61
HIS
58
B
TYR
59
n
62
TYR
59
B
ALA
60
n
63
ALA
60
B
GLU
61
n
64
GLU
61
B
SER
62
n
65
SER
62
B
VAL
63
n
66
VAL
63
B
LYS
64
n
67
LYS
64
B
GLY
65
n
68
GLY
65
B
ARG
66
n
69
ARG
66
B
PHE
67
n
70
PHE
67
B
THR
68
n
71
THR
68
B
ILE
69
n
72
ILE
69
B
SER
70
n
73
SER
70
B
ARG
71
n
74
ARG
71
B
ASP
72
n
75
ASP
72
B
ASP
73
n
76
ASP
73
B
SER
74
n
77
SER
74
B
LYS
75
n
78
LYS
75
B
SER
76
n
79
SER
76
B
SER
77
n
80
SER
77
B
VAL
78
n
81
VAL
78
B
TYR
79
n
82
TYR
79
B
LEU
80
n
83
LEU
80
B
GLN
81
n
84
GLN
81
B
MET
82
n
85
MET
82
B
ASN
82
n
86
A
ASN
82
B
ASN
82
n
87
B
ASN
82
B
LEU
82
n
88
C
LEU
82
B
ARG
83
n
89
ARG
83
B
ALA
84
n
90
ALA
84
B
GLU
85
n
91
GLU
85
B
ASP
86
n
92
ASP
86
B
THR
87
n
93
THR
87
B
GLY
88
n
94
GLY
88
B
ILE
89
n
95
ILE
89
B
TYR
90
n
96
TYR
90
B
TYR
91
n
97
TYR
91
B
CYS
92
n
98
CYS
92
B
THR
93
n
99
THR
93
B
ARG
94
n
100
ARG
94
B
GLY
95
n
101
GLY
95
B
GLY
96
n
102
GLY
96
B
ALA
97
n
103
ALA
97
B
VAL
98
n
104
VAL
98
B
GLY
99
n
105
GLY
99
B
ALA
100
n
106
ALA
100
B
MET
100
n
107
A
MET
100
B
ASP
101
n
108
ASP
101
B
TYR
102
n
109
TYR
102
B
TRP
103
n
110
TRP
103
B
GLY
104
n
111
GLY
104
B
GLN
105
n
112
GLN
105
B
GLY
106
n
113
GLY
106
B
THR
107
n
114
THR
107
B
SER
108
n
115
SER
108
B
VAL
109
n
116
VAL
109
B
THR
110
n
117
THR
110
B
VAL
111
n
118
VAL
111
B
SER
112
n
119
SER
112
B
SER
113
n
120
SER
113
B
ALA
114
n
121
ALA
114
B
THR
115
n
122
THR
115
B
THR
116
n
123
THR
116
B
THR
117
n
124
THR
117
B
ALA
118
n
125
ALA
118
B
PRO
119
n
126
PRO
119
B
SER
120
n
127
SER
120
B
VAL
121
n
128
VAL
121
B
TYR
122
n
129
TYR
122
B
PRO
123
n
130
PRO
123
B
LEU
124
n
131
LEU
124
B
VAL
125
n
132
VAL
125
B
PRO
126
n
133
PRO
126
B
GLY
127
n
134
GLY
127
B
CYS
128
n
135
CYS
128
B
SER
129
n
136
SER
129
B
ASP
130
n
137
ASP
130
B
THR
131
n
138
THR
131
B
SER
132
n
139
SER
132
B
GLY
133
n
140
GLY
133
B
SER
134
n
141
SER
134
B
SER
135
n
142
SER
135
B
VAL
136
n
143
VAL
136
B
THR
137
n
144
THR
137
B
LEU
138
n
145
LEU
138
B
GLY
139
n
146
GLY
139
B
CYS
140
n
147
CYS
140
B
LEU
141
n
148
LEU
141
B
VAL
142
n
149
VAL
142
B
LYS
143
n
150
LYS
143
B
GLY
144
n
151
GLY
144
B
TYR
145
n
152
TYR
145
B
PHE
146
n
153
PHE
146
B
PRO
147
n
154
PRO
147
B
GLU
148
n
155
GLU
148
B
PRO
149
n
156
PRO
149
B
VAL
150
n
157
VAL
150
B
THR
151
n
158
THR
151
B
VAL
152
n
159
VAL
152
B
LYS
153
n
160
LYS
153
B
TRP
154
n
161
TRP
154
B
ASN
155
n
162
ASN
155
B
TYR
156
n
163
TYR
156
B
GLY
157
n
164
GLY
157
B
ALA
158
n
165
ALA
158
B
LEU
159
n
166
LEU
159
B
SER
160
n
167
SER
160
B
SER
161
n
168
SER
161
B
GLY
162
n
169
GLY
162
B
VAL
163
n
170
VAL
163
B
ARG
164
n
171
ARG
164
B
THR
165
n
172
THR
165
B
VAL
166
n
173
VAL
166
B
SER
167
n
174
SER
167
B
SER
168
n
175
SER
168
B
VAL
169
n
176
VAL
169
B
LEU
170
n
177
LEU
170
B
GLN
171
n
178
GLN
171
B
SER
172
n
179
SER
172
B
GLY
173
n
180
GLY
173
B
PHE
174
n
181
PHE
174
B
TYR
175
n
182
TYR
175
B
SER
176
n
183
SER
176
B
LEU
177
n
184
LEU
177
B
SER
178
n
185
SER
178
B
SER
179
n
186
SER
179
B
LEU
180
n
187
LEU
180
B
VAL
181
n
188
VAL
181
B
THR
182
n
189
THR
182
B
VAL
183
n
190
VAL
183
B
PRO
184
n
191
PRO
184
B
SER
185
n
192
SER
185
B
SER
186
n
193
SER
186
B
THR
187
n
194
THR
187
B
TRP
188
n
195
TRP
188
B
PRO
189
n
196
PRO
189
B
SER
190
n
197
SER
190
B
GLN
191
n
198
GLN
191
B
THR
192
n
199
THR
192
B
VAL
193
n
200
VAL
193
B
ILE
194
n
201
ILE
194
B
CYS
195
n
202
CYS
195
B
ASN
196
n
203
ASN
196
B
VAL
197
n
204
VAL
197
B
ALA
198
n
205
ALA
198
B
HIS
199
n
206
HIS
199
B
PRO
200
n
207
PRO
200
B
ALA
201
n
208
ALA
201
B
SER
202
n
209
SER
202
B
LYS
203
n
210
LYS
203
B
VAL
204
n
211
VAL
204
B
ASP
205
n
212
ASP
205
B
LEU
206
n
213
LEU
206
B
ILE
207
n
214
ILE
207
B
LYS
208
n
215
LYS
208
B
GLU
209
n
216
GLU
209
B
PRO
210
n
217
PRO
210
B
SER
211
n
218
SER
211
B
GLY
212
n
219
GLY
212
B
PRO
213
n
220
PRO
213
B
author_and_software_defined_assembly
PISA
2
dimeric
5080
1
19540
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
7
A
O
THR
7
A
N
SER
22
A
N
SER
22
A
N
CYS
23
A
N
CYS
23
A
O
PHE
71
A
O
PHE
76
A
N
LYS
74
A
N
LYS
79
A
O
SER
63
A
O
SER
68
A
O
ASN
53
A
O
ASN
58
A
N
TYR
49
A
N
TYR
54
A
N
LEU
47
A
N
LEU
52
A
O
TRP
35
A
O
TRP
40
A
N
GLN
38
A
N
GLN
43
A
O
VAL
85
A
O
VAL
90
A
N
GLN
90
A
N
GLN
95
A
O
THR
97
A
O
THR
101
A
O
THR
97
A
O
THR
101
A
N
GLN
90
A
N
GLN
95
A
N
TYR
86
A
N
TYR
91
A
O
THR
102
A
O
THR
106
A
N
GLU
105
A
N
GLU
109
A
O
LEU
11
A
O
LEU
11
A
N
PHE
118
A
N
PHE
122
A
O
VAL
133
A
O
VAL
137
A
O
PHE
139
A
O
PHE
143
A
N
TYR
173
A
N
TYR
177
A
N
THR
178
A
N
THR
182
A
O
LEU
160
A
O
LEU
164
A
O
PHE
209
A
O
PHE
213
A
N
TYR
192
A
N
TYR
196
A
N
THR
197
A
N
THR
201
A
O
ASN
145
A
O
ASN
149
A
N
ILE
150
A
N
ILE
154
A
O
SER
153
A
O
SER
157
B
O
SER
7
B
O
SER
7
B
N
SER
21
B
N
SER
21
B
O
CYS
22
B
O
CYS
22
B
N
VAL
78
B
N
VAL
81
B
N
GLN
81
B
N
GLN
84
B
O
THR
68
B
O
THR
71
B
O
HIS
58
B
O
HIS
61
B
N
GLU
50
B
N
GLU
50
B
N
ILE
51
B
N
ILE
51
B
O
MET
34
B
O
MET
34
B
N
GLN
39
B
N
GLN
39
B
O
ILE
89
B
O
ILE
95
B
O
ARG
94
B
O
ARG
100
B
N
ASP
101
B
N
ASP
108
B
O
TYR
102
B
O
TYR
109
B
N
ARG
94
B
N
ARG
100
B
N
TYR
90
B
N
TYR
96
B
O
THR
107
B
O
THR
114
B
O
THR
110
B
O
THR
117
B
N
VAL
12
B
N
VAL
12
B
N
GLN
171
B
N
GLN
178
B
O
PHE
174
B
O
PHE
181
B
O
LEU
180
B
O
LEU
187
B
N
ARG
164
B
N
ARG
171
B
N
ARG
164
B
N
ARG
171
B
O
LEU
180
B
O
LEU
187
B
N
VAL
183
B
N
VAL
190
B
O
VAL
136
B
O
VAL
143
B
O
LYS
143
B
O
LYS
150
B
N
SER
120
B
N
SER
127
B
O
LYS
153
B
O
LYS
160
B
N
ASN
196
B
N
ASN
203
B
N
HIS
199
B
N
HIS
206
B
O
VAL
204
B
O
VAL
211
1
B
B
O
N
GLN
PRO
13
14
0.53
1
B
B
O
CA
GLN
PRO
13
14
0.91
1
B
B
CA
N
PRO
GLY
126
127
0.95
1
B
B
C
CA
PRO
GLY
126
127
1.31
1
B
B
O
N
PRO
GLY
14
15
1.37
1
B
B
O
N
SER
SER
134
135
1.48
1
B
B
O
CD
GLN
PRO
13
14
1.72
1
B
B
O
C
GLN
PRO
13
14
1.74
1
B
B
C
CA
GLN
PRO
13
14
1.75
1
B
B
CG2
O
THR
HOH
131
244
1.94
1
B
GLN
13
-49.39
1
B
PRO
14
54.18
1
B
PRO
126
13.89
1
B
B
PRO
GLY
14
15
92.88
1
B
B
C
N
GLN
PRO
13
14
1.07
1
B
B
C
N
PRO
GLY
14
15
1.03
1
B
B
C
N
SER
SER
134
135
2.11
1
-16.80
2.80
117.10
100.30
B
B
B
CA
C
N
GLN
GLN
PRO
13
13
14
Y
1
-95.93
1.90
121.10
25.17
B
B
B
O
C
N
GLN
GLN
PRO
13
13
14
Y
1
-26.93
1.50
119.30
92.37
B
B
B
C
N
CA
GLN
PRO
PRO
13
14
14
Y
1
16.56
2.10
128.40
144.96
B
B
B
C
N
CD
GLN
PRO
PRO
13
14
14
Y
1
10.83
1.40
111.70
122.53
B
B
B
CA
N
CD
PRO
PRO
PRO
14
14
14
N
1
37.39
2.00
116.20
153.59
B
B
B
CA
C
N
PRO
PRO
GLY
14
14
15
Y
1
-51.11
1.70
123.20
72.09
B
B
B
O
C
N
PRO
PRO
GLY
14
14
15
Y
1
-17.22
2.10
122.30
105.08
B
B
B
C
N
CA
PRO
GLY
GLY
14
15
15
Y
1
-78.16
2.00
116.20
38.04
B
B
B
CA
C
N
PRO
PRO
GLY
126
126
127
Y
1
25.54
1.70
123.20
148.74
B
B
B
O
C
N
PRO
PRO
GLY
126
126
127
Y
1
-64.08
2.10
122.30
58.22
B
B
B
C
N
CA
PRO
GLY
GLY
126
127
127
Y
1
B
B
C
N
GLN
PRO
13
14
-0.270
0.019
1.338
1.068
Y
1
B
B
N
CA
PRO
PRO
14
14
-0.124
0.017
1.468
1.344
N
1
B
B
C
N
PRO
GLY
14
15
-0.304
0.023
1.336
1.032
Y
1
A
VAL
51
67.47
-54.77
1
A
HIS
93
-129.18
-147.72
1
A
ASN
138
42.70
72.63
1
A
ASN
190
-135.41
-31.81
1
A
THR
200
-69.67
15.89
1
A
SER
201
-172.59
134.16
1
B
VAL
2
-37.07
125.66
1
B
PRO
14
-62.42
45.01
1
B
THR
28
-66.01
94.56
1
B
VAL
48
-98.16
-63.90
1
B
ARG
52
-105.37
-162.46
A
1
B
MET
100
-60.30
95.69
1
B
CYS
128
0.99
95.75
1
B
THR
131
-60.35
94.45
1
B
SER
132
-148.58
56.08
1
B
PHE
146
-171.79
134.56
1
B
PRO
147
-84.90
-139.91
1
B
LEU
177
-170.07
-174.24
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER_REP.TOP
PARAM1NKV.CHO
TOPH1NKV.CHO
35.6
4.36
0.00
0.00
4.36
0.00
-8.72
Author states residues 127-135 of chain B is part of a disordered segment.
0.282
0.010
0.22
0.22
0.22
2.50
20.00
737
14764
14375
5.0
79.5
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
1.5
MOLECULAR REPLACEMENT
PDB ENTRY 1MCP
Engh & Huber
FLAT MODEL
32.142
0.302051
0.45
0.35
5.0
0.53
0.50
2.50
20.00
170
3549
56
0
3323
0.019
3.1
26.5
2.68
0.41
0.048
0.389
2.66
74
0
1569
6
55.2
14.4
2.50
20.00
1M7I
14764
14375
1.5
0.097
0.075
1
10.
6.5
79.6
2.50
2.66
737
1
55.2
data collection
Weissenberg
data reduction
WEIS
data reduction
Protein
phasing
MERLOT
refinement
CNS
1.0
data reduction
WEISSENBERG
data scaling
WEIS
data scaling
PROTEIN
light chain of the monoclonal antibody Fab SYA/J6,heavy chain of the monoclonal antibody Fab SYA/J6
CRYSTAL STRUCTURE OF A MONOCLONAL FAB SPECIFIC FOR SHIGELLA FLEXNERI Y LIPOPOLYSACCHARIDE COMPLEXED WITH A PENTASACCHARIDE
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
GLU
79
A
GLU
84
HELX_P
A
LEU
83
A
LEU
88
5
1
5
A
GLN
124
A
GLN
128
HELX_P
A
SER
127
A
SER
131
5
2
4
A
LYS
183
A
LYS
187
HELX_P
A
ARG
188
A
ARG
192
1
3
6
B
THR
28
B
THR
28
HELX_P
B
TYR
32
B
TYR
32
5
4
5
B
GLU
61
B
GLU
64
HELX_P
B
LYS
64
B
LYS
67
5
5
4
B
ARG
83
B
ARG
89
HELX_P
B
THR
87
B
THR
93
5
6
5
B
TYR
156
B
TYR
163
HELX_P
B
ALA
158
B
ALA
165
5
7
3
B
PRO
200
B
PRO
207
HELX_P
B
LYS
203
B
LYS
210
5
8
4
disulf
2.494
A
CYS
23
A
SG
CYS
23
1_555
A
CYS
88
A
SG
CYS
93
1_555
disulf
2.644
A
CYS
134
A
SG
CYS
138
1_555
A
CYS
194
A
SG
CYS
198
1_555
disulf
2.494
B
CYS
22
B
SG
CYS
22
1_555
B
CYS
92
B
SG
CYS
98
1_555
disulf
2.035
B
CYS
140
B
SG
CYS
147
1_555
B
CYS
195
B
SG
CYS
202
1_555
covale
1.438
both
C
RAO
1
C
O2
RAO
1_555
C
NAG
2
C
C1
NAG
1_555
covale
1.444
both
C
NAG
2
C
O3
NAG
1_555
C
RAM
3
C
C1
RAM
1_555
covale
1.445
both
C
RAM
3
C
O3
RAM
1_555
C
RAM
4
C
C1
RAM
1_555
covale
1.434
both
C
RAM
4
C
O2
RAM
1_555
C
RAM
5
C
C1
RAM
1_555
IMMUNE SYSTEM
Fab-carbohydrate interactions; Shigella O-antigen; and anti-carbohydrate antibody, IMMUNE SYSTEM
A
THR
7
A
THR
7
1
A
PRO
8
A
PRO
8
0.18
A
TYR
140
A
TYR
144
1
A
PRO
141
A
PRO
145
1.18
B
PHE
146
B
PHE
153
1
B
PRO
147
B
PRO
154
0.66
B
GLU
148
B
GLU
155
1
B
PRO
149
B
PRO
156
0.00
B
TRP
188
B
TRP
195
1
B
PRO
189
B
PRO
196
0.04
1M7I
PDB
1
1M7I
1M7I
PDB
2
1M7I
1
211
1M7I
1
211
1M7I
A
1
1
215
1
213
1M7I
1
213
1M7I
B
2
1
220
4
8
4
4
4
8
6
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
4
A
LEU
4
A
THR
7
A
THR
7
A
ALA
19
A
ALA
19
A
SER
25
A
SER
25
A
ASP
70
A
ASP
75
A
ILE
75
A
ILE
80
A
PHE
62
A
PHE
67
A
SER
67
A
SER
72
A
ASN
53
A
ASN
58
A
ARG
54
A
ARG
59
A
LYS
45
A
LYS
50
A
TYR
49
A
TYR
54
A
LEU
33
A
LEU
38
A
GLN
38
A
GLN
43
A
GLY
84
A
GLY
89
A
GLN
90
A
GLN
95
A
THR
97
A
THR
101
A
PHE
98
A
PHE
102
A
GLY
84
A
GLY
89
A
GLN
90
A
GLN
95
A
THR
102
A
THR
106
A
LYS
107
A
LYS
111
A
SER
10
A
SER
10
A
ARG
14
A
ARG
14
A
THR
114
A
THR
118
A
PHE
118
A
PHE
122
A
GLY
129
A
GLY
133
A
PHE
139
A
PHE
143
A
TYR
173
A
TYR
177
A
THR
182
A
THR
186
A
VAL
159
A
VAL
163
A
TRP
163
A
TRP
167
A
ILE
205
A
ILE
209
A
ASN
210
A
ASN
214
A
SER
191
A
SER
195
A
THR
197
A
THR
201
A
ASN
145
A
ASN
149
A
ILE
150
A
ILE
154
A
SER
153
A
SER
157
A
ARG
155
A
ARG
159
B
LYS
3
B
LYS
3
B
SER
7
B
SER
7
B
MET
18
B
MET
18
B
SER
25
B
SER
25
B
SER
77
B
SER
80
B
MET
82
B
MET
85
B
PHE
67
B
PHE
70
B
ASP
72
B
ASP
75
B
THR
57
B
THR
60
B
TYR
59
B
TYR
62
B
GLY
44
B
GLY
44
B
ILE
51
B
ILE
51
B
TRP
33
B
TRP
33
B
SER
40
B
SER
40
B
GLY
88
B
GLY
94
B
GLY
95
B
GLY
101
B
MET
100
B
MET
107
B
TRP
103
B
TRP
110
A
B
GLY
88
B
GLY
94
B
GLY
95
B
GLY
101
B
THR
107
B
THR
114
B
VAL
111
B
VAL
118
B
LEU
11
B
LEU
11
B
VAL
12
B
VAL
12
B
VAL
169
B
VAL
176
B
GLN
171
B
GLN
178
B
PHE
174
B
PHE
181
B
VAL
183
B
VAL
190
B
ARG
164
B
ARG
171
B
THR
165
B
THR
172
B
PHE
174
B
PHE
181
B
VAL
183
B
VAL
190
B
VAL
136
B
VAL
143
B
TYR
145
B
TYR
152
B
SER
120
B
SER
127
B
LEU
124
B
LEU
131
B
THR
151
B
THR
158
B
TRP
154
B
TRP
161
B
CYS
195
B
CYS
202
B
HIS
199
B
HIS
206
B
VAL
204
B
VAL
211
B
LYS
208
B
LYS
215
96
P 43 21 2