1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Park, C.-J. Bae, S.-H. Lee, M.-K. Varani, G. Choi, B.-S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking UK NUCLEIC ACIDS RES. NARHAD 0389 0305-1048 31 2824 2832 10.1093/nar/gkg387 12771209 Solution structure of the influenza A virus cRNA promoter: implications for differential recognition of viral promoter structures by RNA-dependent RNA polymerase 2003 10.2210/pdb1m82/pdb pdb_00001m82 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 CONSERVED INTERNAL LOOP OF THE COMPLEMENTARY RNA PROMOTER OF THE INFLUENZA A VIRUS 7983.740 RNA (25-MER): THE COMPLEMENTARY RNA PROMOTER OF INFLUENZA A VIRUS 1 syn polymer no no GGAAGCAGGCUUCGGCCUUGUUUCC GGAAGCAGGCUUCGGCCUUGUUUCC A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n 3.140 1 19 A 1 A 25 -1.665 A_G1:C25_A 1 1.867 -0.751 0.402 -0.387 12.779 1 19 A 2 A 24 -0.439 A_G2:C24_A 2 -5.979 -0.801 -0.120 -0.453 4.824 1 20 A 3 A 23 -2.206 A_A3:U23_A 3 -3.668 0.014 -1.503 -0.668 11.672 1 20 A 4 A 22 6.770 A_A4:U22_A 4 1.671 -0.560 -0.431 -0.342 11.409 1 28 A 5 A 21 11.325 A_G5:U21_A 5 -7.744 -1.981 -0.523 -0.345 -5.642 1 19 A 6 A 20 -0.795 A_C6:G20_A 6 1.220 -0.341 -0.260 -0.150 8.004 1 19 A 8 A 17 -2.599 A_G8:C17_A 7 -4.233 0.214 0.587 -0.175 -10.234 1 19 A 9 A 16 -5.313 A_G9:C16_A 8 5.694 0.604 -1.380 -0.417 11.309 1 19 A 10 A 15 -7.497 A_C10:G15_A 9 4.979 -0.252 -1.346 -0.515 19.468 A 11 A 14 -122.830 A_U11:G14_A 10 -8.798 0.588 -0.174 -3.487 3.124 37.523 A A 1 2 9.468 A A 25 24 3.290 6.065 0.004 -0.806 AA_G1G2:C24C25_AA 1 -0.073 0.114 37.047 -2.035 -0.016 4.130 37.122 A A 2 3 -3.449 A A 24 23 4.116 -2.191 -0.092 -0.903 AA_G2A3:U23C24_AA 2 3.931 -6.189 36.858 -1.049 0.809 2.976 31.369 A A 3 4 14.156 A A 23 22 3.340 7.506 -0.245 -0.981 AA_A3A4:U22U23_AA 3 -7.702 14.526 29.511 -3.222 -0.990 2.115 28.359 A A 4 5 26.266 A A 22 21 3.211 12.410 0.685 -1.546 AA_A4G5:U21U22_AA 4 -3.699 7.829 25.284 -5.627 -2.136 3.445 43.915 A A 5 6 10.410 A A 21 20 3.710 7.733 -1.045 -1.814 AA_G5C6:G20U21_AA 5 -5.031 6.773 42.982 -3.237 0.870 3.672 34.221 A A 8 9 22.287 A A 17 16 4.530 12.744 0.054 -1.334 AA_G8G9:C16C17_AA 6 6.082 -10.636 31.251 -4.909 1.169 3.032 29.839 A A 9 10 -1.626 A A 16 15 2.989 -0.837 -0.218 -1.610 AA_G9C10:G15C16_AA 7 0.023 -0.045 29.828 -2.966 0.428 2.928 97.541 A A 10 11 11.620 A A 15 14 3.165 17.421 -0.664 -1.330 AA_C10U11:G14G15_AA 8 5.282 -3.523 96.254 -1.157 0.524 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-06-03 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name RCSB Y RCSB 2002-07-24 REL REL This sequence occurs naturally in complementary RNA of the influenza A virus genome segments. sample The structure was determined using 3D heteronuclear nmr spectroscopy. structures with the least restraint violations,structures with the lowest energy 100 31 2D NOESY 2D NOESY 2D TOCSY DQF-COSY 2D NOESY 2D NOESY HETCOR 3D 13C NOESY-HSQC 3D HCCH-COSY 3D HCCH-COSY-TOCSY 20mM NaPi 0.1mM EDTA 6.0 ambient 300 K 20mM NaPi 0.1mM EDTA 6.0 ambient 280 K 20mM NaPi 0.1mM EDTA 6.0 ambient 290 K 20mM NaPi 0.1mM EDTA 6.0 ambient 310 K The structures are based on a total of 834 restraints, 592 are NOE-derived distance restraints, 140 torsion angle restraints, 54 planarity restraints and 48 base-pair restraints. torsion angle dynamics 21 lowest energy 1mM influenza A virus cRNA promoter (25mer) 20mM phosphate buffer(pH 6.0)0.1mM EDTA 90% H2O/10% D2O 1mM influenza A virus cRNA promoter (25mer) U-15N, 13C; 20mM phosphate buffer(pH 6.0)0.1mM EDTA 100% D2O Biosym,inc. processing Felix 95 Varian, inc. collection VNMR 6.1c Brunger structure solution CNS 1.0 Brunger refinement CNS 1.0 600 Bruker DMX 800 Bruker DMX 500 Bruker AMX 600 Varian INOVA G 1 n 1 G 1 A G 2 n 2 G 2 A A 3 n 3 A 3 A A 4 n 4 A 4 A G 5 n 5 G 5 A C 6 n 6 C 6 A A 7 n 7 A 7 A G 8 n 8 G 8 A G 9 n 9 G 9 A C 10 n 10 C 10 A U 11 n 11 U 11 A U 12 n 12 U 12 A C 13 n 13 C 13 A G 14 n 14 G 14 A G 15 n 15 G 15 A C 16 n 16 C 16 A C 17 n 17 C 17 A U 18 n 18 U 18 A U 19 n 19 U 19 A G 20 n 20 G 20 A U 21 n 21 U 21 A U 22 n 22 U 22 A U 23 n 23 U 23 A C 24 n 24 C 24 A C 25 n 25 C 25 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 4 A A O2 H1 U G 11 14 1.58 6 A A H2' O4' G G 14 15 1.58 8 A A O2 H1 U G 11 14 1.59 14 A A O2 H1 U G 11 14 1.57 17 A A O2 H1 U G 11 14 1.60 21 A A O2 H1 U G 11 14 1.58 28 A A H61 O4 A U 7 19 1.38 28 A A O2 H5 C U 17 18 1.58 SOLUTION STRUCTURE OF THE COMPLEMENTARY RNA PROMOTER OF INFLUENZA A VIRUS 1 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 25 A N3 C 25 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 25 A O2 C 25 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 25 A N4 C 25 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 24 A N3 C 24 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 24 A O2 C 24 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 24 A N4 C 24 1_555 hydrog WATSON-CRICK A A 3 A N1 A 3 1_555 A U 23 A N3 U 23 1_555 hydrog WATSON-CRICK A A 3 A N6 A 3 1_555 A U 23 A O4 U 23 1_555 hydrog WATSON-CRICK A A 4 A N1 A 4 1_555 A U 22 A N3 U 22 1_555 hydrog WATSON-CRICK A A 4 A N6 A 4 1_555 A U 22 A O4 U 22 1_555 hydrog WATSON-CRICK A A 4 A N1 A 4 1_555 A U 23 A N3 U 23 1_555 hydrog WATSON-CRICK A A 4 A N6 A 4 1_555 A U 23 A O4 U 23 1_555 hydrog TYPE_28_PAIR A G 5 A N1 G 5 1_555 A U 21 A O2 U 21 1_555 hydrog TYPE_28_PAIR A G 5 A O6 G 5 1_555 A U 21 A N3 U 21 1_555 hydrog WATSON-CRICK A C 6 A N3 C 6 1_555 A G 20 A N1 G 20 1_555 hydrog WATSON-CRICK A C 6 A N4 C 6 1_555 A G 20 A O6 G 20 1_555 hydrog WATSON-CRICK A C 6 A O2 C 6 1_555 A G 20 A N2 G 20 1_555 hydrog WATSON-CRICK A G 8 A N1 G 8 1_555 A C 17 A N3 C 17 1_555 hydrog WATSON-CRICK A G 8 A N2 G 8 1_555 A C 17 A O2 C 17 1_555 hydrog WATSON-CRICK A G 8 A O6 G 8 1_555 A C 17 A N4 C 17 1_555 hydrog WATSON-CRICK A G 9 A N1 G 9 1_555 A C 16 A N3 C 16 1_555 hydrog WATSON-CRICK A G 9 A N2 G 9 1_555 A C 16 A O2 C 16 1_555 hydrog WATSON-CRICK A G 9 A O6 G 9 1_555 A C 16 A N4 C 16 1_555 hydrog WATSON-CRICK A C 10 A N3 C 10 1_555 A G 15 A N1 G 15 1_555 hydrog WATSON-CRICK A C 10 A N4 C 10 1_555 A G 15 A O6 G 15 1_555 hydrog WATSON-CRICK A C 10 A O2 C 10 1_555 A G 15 A N2 G 15 1_555 hydrog U-G MISPAIR A U 11 A O2 U 11 1_555 A G 14 A N1 G 14 1_555 hydrog TYPE_28_PAIR A U 11 A N3 U 11 1_555 A G 15 A O6 G 15 1_555 hydrog TYPE_28_PAIR A U 11 A O2 U 11 1_555 A G 15 A N1 G 15 1_555 RNA asymmetric internal loop, A-form helix, RNA 1M82 PDB 1 1M82 1 25 1M82 1 25 1M82 A 1 1 25