1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Park, C.-J.
Bae, S.-H.
Lee, M.-K.
Varani, G.
Choi, B.-S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
UK
NUCLEIC ACIDS RES.
NARHAD
0389
0305-1048
31
2824
2832
10.1093/nar/gkg387
12771209
Solution structure of the influenza A virus cRNA promoter: implications for differential recognition of viral promoter structures by RNA-dependent RNA polymerase
2003
10.2210/pdb1m82/pdb
pdb_00001m82
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
CONSERVED INTERNAL LOOP OF THE COMPLEMENTARY RNA PROMOTER OF THE INFLUENZA A VIRUS
7983.740
RNA (25-MER): THE COMPLEMENTARY RNA PROMOTER OF INFLUENZA A VIRUS
1
syn
polymer
no
no
GGAAGCAGGCUUCGGCCUUGUUUCC
GGAAGCAGGCUUCGGCCUUGUUUCC
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
3.140
1
19
A
1
A
25
-1.665
A_G1:C25_A
1
1.867
-0.751
0.402
-0.387
12.779
1
19
A
2
A
24
-0.439
A_G2:C24_A
2
-5.979
-0.801
-0.120
-0.453
4.824
1
20
A
3
A
23
-2.206
A_A3:U23_A
3
-3.668
0.014
-1.503
-0.668
11.672
1
20
A
4
A
22
6.770
A_A4:U22_A
4
1.671
-0.560
-0.431
-0.342
11.409
1
28
A
5
A
21
11.325
A_G5:U21_A
5
-7.744
-1.981
-0.523
-0.345
-5.642
1
19
A
6
A
20
-0.795
A_C6:G20_A
6
1.220
-0.341
-0.260
-0.150
8.004
1
19
A
8
A
17
-2.599
A_G8:C17_A
7
-4.233
0.214
0.587
-0.175
-10.234
1
19
A
9
A
16
-5.313
A_G9:C16_A
8
5.694
0.604
-1.380
-0.417
11.309
1
19
A
10
A
15
-7.497
A_C10:G15_A
9
4.979
-0.252
-1.346
-0.515
19.468
A
11
A
14
-122.830
A_U11:G14_A
10
-8.798
0.588
-0.174
-3.487
3.124
37.523
A
A
1
2
9.468
A
A
25
24
3.290
6.065
0.004
-0.806
AA_G1G2:C24C25_AA
1
-0.073
0.114
37.047
-2.035
-0.016
4.130
37.122
A
A
2
3
-3.449
A
A
24
23
4.116
-2.191
-0.092
-0.903
AA_G2A3:U23C24_AA
2
3.931
-6.189
36.858
-1.049
0.809
2.976
31.369
A
A
3
4
14.156
A
A
23
22
3.340
7.506
-0.245
-0.981
AA_A3A4:U22U23_AA
3
-7.702
14.526
29.511
-3.222
-0.990
2.115
28.359
A
A
4
5
26.266
A
A
22
21
3.211
12.410
0.685
-1.546
AA_A4G5:U21U22_AA
4
-3.699
7.829
25.284
-5.627
-2.136
3.445
43.915
A
A
5
6
10.410
A
A
21
20
3.710
7.733
-1.045
-1.814
AA_G5C6:G20U21_AA
5
-5.031
6.773
42.982
-3.237
0.870
3.672
34.221
A
A
8
9
22.287
A
A
17
16
4.530
12.744
0.054
-1.334
AA_G8G9:C16C17_AA
6
6.082
-10.636
31.251
-4.909
1.169
3.032
29.839
A
A
9
10
-1.626
A
A
16
15
2.989
-0.837
-0.218
-1.610
AA_G9C10:G15C16_AA
7
0.023
-0.045
29.828
-2.966
0.428
2.928
97.541
A
A
10
11
11.620
A
A
15
14
3.165
17.421
-0.664
-1.330
AA_C10U11:G14G15_AA
8
5.282
-3.523
96.254
-1.157
0.524
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-06-03
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2002-07-24
REL
REL
This sequence occurs naturally in complementary RNA of the influenza A virus genome segments.
sample
The structure was determined using 3D heteronuclear nmr spectroscopy.
structures with the least restraint violations,structures with the lowest energy
100
31
2D NOESY
2D NOESY
2D TOCSY
DQF-COSY
2D NOESY
2D NOESY
HETCOR
3D 13C NOESY-HSQC
3D HCCH-COSY
3D HCCH-COSY-TOCSY
20mM NaPi 0.1mM EDTA
6.0
ambient
300
K
20mM NaPi 0.1mM EDTA
6.0
ambient
280
K
20mM NaPi 0.1mM EDTA
6.0
ambient
290
K
20mM NaPi 0.1mM EDTA
6.0
ambient
310
K
The structures are based on a total of 834 restraints, 592 are NOE-derived distance restraints, 140 torsion angle restraints, 54 planarity restraints and 48 base-pair restraints.
torsion angle dynamics
21
lowest energy
1mM influenza A virus cRNA promoter (25mer)
20mM phosphate buffer(pH 6.0)0.1mM EDTA
90% H2O/10% D2O
1mM influenza A virus cRNA promoter (25mer) U-15N, 13C;
20mM phosphate buffer(pH 6.0)0.1mM EDTA
100% D2O
Biosym,inc.
processing
Felix
95
Varian, inc.
collection
VNMR
6.1c
Brunger
structure solution
CNS
1.0
Brunger
refinement
CNS
1.0
600
Bruker
DMX
800
Bruker
DMX
500
Bruker
AMX
600
Varian
INOVA
G
1
n
1
G
1
A
G
2
n
2
G
2
A
A
3
n
3
A
3
A
A
4
n
4
A
4
A
G
5
n
5
G
5
A
C
6
n
6
C
6
A
A
7
n
7
A
7
A
G
8
n
8
G
8
A
G
9
n
9
G
9
A
C
10
n
10
C
10
A
U
11
n
11
U
11
A
U
12
n
12
U
12
A
C
13
n
13
C
13
A
G
14
n
14
G
14
A
G
15
n
15
G
15
A
C
16
n
16
C
16
A
C
17
n
17
C
17
A
U
18
n
18
U
18
A
U
19
n
19
U
19
A
G
20
n
20
G
20
A
U
21
n
21
U
21
A
U
22
n
22
U
22
A
U
23
n
23
U
23
A
C
24
n
24
C
24
A
C
25
n
25
C
25
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
4
A
A
O2
H1
U
G
11
14
1.58
6
A
A
H2'
O4'
G
G
14
15
1.58
8
A
A
O2
H1
U
G
11
14
1.59
14
A
A
O2
H1
U
G
11
14
1.57
17
A
A
O2
H1
U
G
11
14
1.60
21
A
A
O2
H1
U
G
11
14
1.58
28
A
A
H61
O4
A
U
7
19
1.38
28
A
A
O2
H5
C
U
17
18
1.58
SOLUTION STRUCTURE OF THE COMPLEMENTARY RNA PROMOTER OF INFLUENZA A VIRUS
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
25
A
N3
C
25
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
25
A
O2
C
25
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
25
A
N4
C
25
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
A
C
24
A
N3
C
24
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
A
C
24
A
O2
C
24
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
A
C
24
A
N4
C
24
1_555
hydrog
WATSON-CRICK
A
A
3
A
N1
A
3
1_555
A
U
23
A
N3
U
23
1_555
hydrog
WATSON-CRICK
A
A
3
A
N6
A
3
1_555
A
U
23
A
O4
U
23
1_555
hydrog
WATSON-CRICK
A
A
4
A
N1
A
4
1_555
A
U
22
A
N3
U
22
1_555
hydrog
WATSON-CRICK
A
A
4
A
N6
A
4
1_555
A
U
22
A
O4
U
22
1_555
hydrog
WATSON-CRICK
A
A
4
A
N1
A
4
1_555
A
U
23
A
N3
U
23
1_555
hydrog
WATSON-CRICK
A
A
4
A
N6
A
4
1_555
A
U
23
A
O4
U
23
1_555
hydrog
TYPE_28_PAIR
A
G
5
A
N1
G
5
1_555
A
U
21
A
O2
U
21
1_555
hydrog
TYPE_28_PAIR
A
G
5
A
O6
G
5
1_555
A
U
21
A
N3
U
21
1_555
hydrog
WATSON-CRICK
A
C
6
A
N3
C
6
1_555
A
G
20
A
N1
G
20
1_555
hydrog
WATSON-CRICK
A
C
6
A
N4
C
6
1_555
A
G
20
A
O6
G
20
1_555
hydrog
WATSON-CRICK
A
C
6
A
O2
C
6
1_555
A
G
20
A
N2
G
20
1_555
hydrog
WATSON-CRICK
A
G
8
A
N1
G
8
1_555
A
C
17
A
N3
C
17
1_555
hydrog
WATSON-CRICK
A
G
8
A
N2
G
8
1_555
A
C
17
A
O2
C
17
1_555
hydrog
WATSON-CRICK
A
G
8
A
O6
G
8
1_555
A
C
17
A
N4
C
17
1_555
hydrog
WATSON-CRICK
A
G
9
A
N1
G
9
1_555
A
C
16
A
N3
C
16
1_555
hydrog
WATSON-CRICK
A
G
9
A
N2
G
9
1_555
A
C
16
A
O2
C
16
1_555
hydrog
WATSON-CRICK
A
G
9
A
O6
G
9
1_555
A
C
16
A
N4
C
16
1_555
hydrog
WATSON-CRICK
A
C
10
A
N3
C
10
1_555
A
G
15
A
N1
G
15
1_555
hydrog
WATSON-CRICK
A
C
10
A
N4
C
10
1_555
A
G
15
A
O6
G
15
1_555
hydrog
WATSON-CRICK
A
C
10
A
O2
C
10
1_555
A
G
15
A
N2
G
15
1_555
hydrog
U-G MISPAIR
A
U
11
A
O2
U
11
1_555
A
G
14
A
N1
G
14
1_555
hydrog
TYPE_28_PAIR
A
U
11
A
N3
U
11
1_555
A
G
15
A
O6
G
15
1_555
hydrog
TYPE_28_PAIR
A
U
11
A
O2
U
11
1_555
A
G
15
A
N1
G
15
1_555
RNA
asymmetric internal loop, A-form helix, RNA
1M82
PDB
1
1M82
1
25
1M82
1
25
1M82
A
1
1
25