1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Song, J.
Laskowski Jr., M.
Qasim, M.A.
Markley, J.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
42
6380
6391
10.1021/bi034053f
12767219
Two conformational states of Turkey ovomucoid third domain at low pH: three-dimensional structures, internal dynamics, and interconversion kinetics and thermodynamics.
2003
10.2210/pdb1m8b/pdb
pdb_00001m8b
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
6044.783
Ovomucoid
RESIDUES 130-185; KAZAL-LIKE 3 (INHIBIT CHYMOTRYPIN, ELASTASE, ETC.)
P14D
1
syn
polymer
no
no
LAAVSVDCSEYPKDACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
LAAVSVDCSEYPKDACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-09-04
1
1
2008-04-28
1
2
2011-07-13
1
3
2021-10-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
SOLUTION STRUCTURE OF THE T State OF TURKEY OVOMUCOID AT PH 2.5
RCSB
Y
RCSB
2002-07-24
REL
The sequence for Ovomucoid fragment was chemically synthesized. It occurs naturally in Meleagris gallopavo (Common turkey).
sample
structures with favorable non-bond energy
50
20
3D_13C-separated_NOESY
3D_15N-separated_NOESY
2D NOESY
2D NOESY
no salt added
2.5
ambient
298
K
TORSION ANGLE DYNAMICS,SIMULATED ANNEALING
1
minimized average structure
1 mM
90% H2O/10% D2O
1 mM
100% D2O
processing
Felix
95
data analysis
Sparky
3.72
structure solution
DYANA
1.5
refinement
DYANA
1.5
750
Bruker
DMX
600
Bruker
AMX
500
Bruker
DMX
LEU
1
n
1
LEU
1
A
ALA
2
n
2
ALA
2
A
ALA
3
n
3
ALA
3
A
VAL
4
n
4
VAL
4
A
SER
5
n
5
SER
5
A
VAL
6
n
6
VAL
6
A
ASP
7
n
7
ASP
7
A
CYS
8
n
8
CYS
8
A
SER
9
n
9
SER
9
A
GLU
10
n
10
GLU
10
A
TYR
11
n
11
TYR
11
A
PRO
12
n
12
PRO
12
A
LYS
13
n
13
LYS
13
A
ASP
14
n
14
ASP
14
A
ALA
15
n
15
ALA
15
A
CYS
16
n
16
CYS
16
A
THR
17
n
17
THR
17
A
LEU
18
n
18
LEU
18
A
GLU
19
n
19
GLU
19
A
TYR
20
n
20
TYR
20
A
ARG
21
n
21
ARG
21
A
PRO
22
n
22
PRO
22
A
LEU
23
n
23
LEU
23
A
CYS
24
n
24
CYS
24
A
GLY
25
n
25
GLY
25
A
SER
26
n
26
SER
26
A
ASP
27
n
27
ASP
27
A
ASN
28
n
28
ASN
28
A
LYS
29
n
29
LYS
29
A
THR
30
n
30
THR
30
A
TYR
31
n
31
TYR
31
A
GLY
32
n
32
GLY
32
A
ASN
33
n
33
ASN
33
A
LYS
34
n
34
LYS
34
A
CYS
35
n
35
CYS
35
A
ASN
36
n
36
ASN
36
A
PHE
37
n
37
PHE
37
A
CYS
38
n
38
CYS
38
A
ASN
39
n
39
ASN
39
A
ALA
40
n
40
ALA
40
A
VAL
41
n
41
VAL
41
A
VAL
42
n
42
VAL
42
A
GLU
43
n
43
GLU
43
A
SER
44
n
44
SER
44
A
ASN
45
n
45
ASN
45
A
GLY
46
n
46
GLY
46
A
THR
47
n
47
THR
47
A
LEU
48
n
48
LEU
48
A
THR
49
n
49
THR
49
A
LEU
50
n
50
LEU
50
A
SER
51
n
51
SER
51
A
HIS
52
n
52
HIS
52
A
PHE
53
n
53
PHE
53
A
GLY
54
n
54
GLY
54
A
LYS
55
n
55
LYS
55
A
CYS
56
n
56
CYS
56
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
31
A
O
TYR
31
A
N
LEU
23
A
N
LEU
23
A
N
CYS
24
A
N
CYS
24
A
O
HIS
52
A
O
HIS
52
5
A
A
O
H
SER
THR
44
47
1.59
6
A
A
O
H
CYS
VAL
38
42
1.51
6
A
A
OE1
H
GLU
TYR
10
11
1.56
6
A
A
O
HD22
GLU
ASN
19
33
1.58
7
A
A
O
HG1
SER
THR
44
47
1.41
7
A
A
OE1
H
GLU
TYR
10
11
1.57
10
A
A
HH
O
TYR
CYS
11
35
1.46
10
A
A
OE1
H
GLU
TYR
10
11
1.57
12
A
A
OE1
H
GLU
TYR
10
11
1.56
12
A
A
O
HD21
CYS
ASN
35
39
1.56
12
A
A
O
H
CYS
VAL
38
42
1.58
13
A
A
O
H
CYS
VAL
38
42
1.53
13
A
A
OE1
H
GLU
TYR
10
11
1.57
14
A
A
O
H
SER
THR
44
47
1.57
15
A
A
HH
O
TYR
CYS
11
35
1.51
15
A
A
O
H
CYS
VAL
38
42
1.54
19
A
A
O
HG1
SER
THR
44
47
1.60
20
A
A
O
H
PRO
GLY
22
54
1.52
20
A
A
O
H
CYS
VAL
38
42
1.54
1
A
ALA
2
45.63
73.03
1
A
CYS
8
-155.07
25.69
1
A
GLU
10
-153.67
22.51
1
A
ASP
14
-95.13
54.88
1
A
SER
44
-93.42
35.26
1
A
ASN
45
57.00
17.70
2
A
ALA
3
41.68
-161.09
2
A
CYS
8
-151.48
26.50
2
A
SER
9
-100.03
42.40
2
A
GLU
10
-161.03
27.17
2
A
ASN
28
71.03
39.99
2
A
HIS
52
-171.09
-179.38
3
A
ALA
2
57.68
-178.49
3
A
VAL
4
50.90
-180.00
3
A
SER
5
-179.98
119.77
3
A
CYS
8
-155.26
25.94
3
A
GLU
10
-143.86
15.95
4
A
ALA
2
62.62
171.11
4
A
SER
5
-178.79
108.50
4
A
GLU
10
-165.77
28.55
4
A
ASP
14
-88.29
48.21
4
A
ALA
15
175.77
174.04
4
A
SER
44
-85.67
46.68
5
A
VAL
4
50.32
178.19
5
A
SER
5
-178.26
143.69
5
A
CYS
8
-149.51
35.32
5
A
SER
9
-104.14
46.18
5
A
GLU
10
-173.40
33.54
5
A
ALA
15
179.66
160.41
5
A
SER
44
-88.86
41.68
5
A
ASN
45
48.71
24.18
6
A
ALA
2
-176.06
114.24
6
A
ALA
3
178.72
58.68
6
A
VAL
4
50.70
179.58
6
A
SER
5
179.27
151.67
6
A
GLU
10
-172.66
-38.97
6
A
TYR
11
-37.39
155.62
6
A
ASP
14
-96.22
46.59
6
A
ALA
15
174.95
165.16
6
A
SER
44
-90.03
39.45
6
A
ASN
45
59.71
15.76
7
A
GLU
10
-164.88
-39.99
7
A
TYR
11
-38.22
159.59
7
A
LYS
55
-39.94
137.02
8
A
ALA
2
65.01
178.05
8
A
ALA
3
66.80
141.72
8
A
CYS
8
-155.94
35.34
8
A
SER
9
-101.66
41.19
8
A
GLU
10
-161.00
27.06
8
A
SER
44
-89.96
37.66
8
A
ASN
45
58.87
16.62
8
A
LYS
55
-41.52
152.89
9
A
ALA
2
174.69
154.68
9
A
ALA
3
51.25
179.90
9
A
CYS
8
-155.64
26.14
9
A
SER
9
-99.21
33.54
9
A
GLU
10
-149.78
19.75
9
A
ALA
15
175.95
159.24
10
A
ALA
2
-177.52
69.41
10
A
SER
5
178.96
132.04
10
A
GLU
10
-172.93
-38.47
10
A
TYR
11
-38.48
159.08
10
A
ALA
15
-175.07
118.26
10
A
GLU
19
-45.14
161.28
10
A
ASN
28
70.63
35.56
10
A
SER
44
-90.15
41.37
11
A
ALA
2
68.26
-161.84
11
A
ALA
3
63.13
73.81
11
A
CYS
8
-155.23
33.01
11
A
SER
9
-107.49
43.89
11
A
GLU
10
-161.96
27.67
11
A
ASP
14
-89.21
44.08
11
A
ALA
15
-171.32
-178.71
11
A
SER
44
-92.83
41.33
11
A
ASN
45
55.94
18.38
12
A
ALA
3
-179.57
90.28
12
A
GLU
10
-165.58
-40.34
12
A
TYR
11
-38.18
158.60
12
A
ASP
14
-102.35
50.06
12
A
ALA
15
-178.35
134.44
12
A
ASN
28
78.07
37.53
13
A
ALA
2
172.78
76.61
13
A
SER
5
-174.31
119.35
13
A
GLU
10
-177.68
-37.45
13
A
TYR
11
-40.82
154.55
13
A
SER
44
-87.95
44.92
13
A
ASN
45
55.21
19.42
13
A
LYS
55
-39.90
137.07
14
A
ALA
2
-141.51
56.99
14
A
ALA
3
-170.74
145.94
14
A
SER
9
-90.87
33.36
14
A
GLU
10
-142.19
14.31
14
A
ASP
14
-116.41
73.22
14
A
ALA
15
-176.89
-38.58
14
A
CYS
16
57.56
-176.11
14
A
SER
44
-88.95
46.84
14
A
ASN
45
48.72
24.10
14
A
LYS
55
-39.86
142.10
15
A
VAL
4
-57.94
174.55
15
A
CYS
8
-147.17
20.61
15
A
SER
44
-99.88
41.74
15
A
ASN
45
58.16
17.34
16
A
SER
5
-179.18
127.52
16
A
CYS
8
-154.79
24.81
16
A
TYR
11
-43.36
166.86
16
A
ASP
14
-116.83
71.78
16
A
ALA
15
-175.11
-87.48
16
A
CYS
16
66.85
152.82
16
A
GLU
19
-39.30
139.29
16
A
SER
44
-94.49
33.82
16
A
HIS
52
-175.67
-176.40
16
A
LYS
55
-39.93
140.40
17
A
ALA
3
-176.13
57.29
17
A
VAL
4
51.13
176.98
17
A
CYS
8
-155.54
47.92
17
A
GLU
10
-166.71
30.23
17
A
ASN
45
80.59
-2.40
18
A
ALA
2
-152.91
57.95
18
A
ALA
3
-149.94
55.65
18
A
GLU
10
-177.86
-37.01
18
A
TYR
11
-44.02
169.30
18
A
ALA
15
171.58
170.42
18
A
SER
44
-91.57
44.01
19
A
VAL
4
60.40
147.58
19
A
SER
5
-172.50
90.17
19
A
CYS
8
-150.80
64.66
19
A
SER
9
-140.92
43.49
19
A
GLU
10
-160.95
26.53
19
A
ALA
15
162.97
134.04
19
A
SER
44
-90.14
38.69
19
A
ASN
45
59.69
16.05
20
A
ALA
2
62.92
164.32
20
A
VAL
4
50.62
179.58
20
A
SER
5
176.80
138.41
20
A
CYS
16
63.75
166.60
20
A
GLU
19
-49.76
166.58
20
A
SER
44
-90.68
36.28
20
A
ASN
45
57.98
17.36
20
A
LYS
55
-39.99
134.24
minimized average
Solution structure of the C State of turkey ovomucoid at pH 2.5
1
N
N
A
ASN
33
A
ASN
33
HELX_P
A
SER
44
A
SER
44
1
1
12
disulf
2.093
A
CYS
8
A
SG
CYS
8
1_555
A
CYS
38
A
SG
CYS
38
1_555
disulf
1.997
A
CYS
16
A
SG
CYS
16
1_555
A
CYS
35
A
SG
CYS
35
1_555
disulf
2.087
A
CYS
24
A
SG
CYS
24
1_555
A
CYS
56
A
SG
CYS
56
1_555
HYDROLASE INHIBITOR
OMTKY3 CONFORMATIONAL TRANSITION CIS-TRANS ISOMERIZATION, HYDROLASE INHIBITOR
A
TYR
11
A
TYR
11
1
A
PRO
12
A
PRO
12
0.04
A
TYR
11
A
TYR
11
2
A
PRO
12
A
PRO
12
0.02
A
TYR
11
A
TYR
11
3
A
PRO
12
A
PRO
12
0.02
A
TYR
11
A
TYR
11
4
A
PRO
12
A
PRO
12
-0.09
A
TYR
11
A
TYR
11
5
A
PRO
12
A
PRO
12
-0.04
A
TYR
11
A
TYR
11
6
A
PRO
12
A
PRO
12
-0.02
A
TYR
11
A
TYR
11
7
A
PRO
12
A
PRO
12
-0.04
A
TYR
11
A
TYR
11
8
A
PRO
12
A
PRO
12
0.04
A
TYR
11
A
TYR
11
9
A
PRO
12
A
PRO
12
-0.06
A
TYR
11
A
TYR
11
10
A
PRO
12
A
PRO
12
-0.04
A
TYR
11
A
TYR
11
11
A
PRO
12
A
PRO
12
-0.14
A
TYR
11
A
TYR
11
12
A
PRO
12
A
PRO
12
-0.04
A
TYR
11
A
TYR
11
13
A
PRO
12
A
PRO
12
0.11
A
TYR
11
A
TYR
11
14
A
PRO
12
A
PRO
12
0.04
A
TYR
11
A
TYR
11
15
A
PRO
12
A
PRO
12
0.00
A
TYR
11
A
TYR
11
16
A
PRO
12
A
PRO
12
-0.02
A
TYR
11
A
TYR
11
17
A
PRO
12
A
PRO
12
0.03
A
TYR
11
A
TYR
11
18
A
PRO
12
A
PRO
12
0.01
A
TYR
11
A
TYR
11
19
A
PRO
12
A
PRO
12
-0.02
A
TYR
11
A
TYR
11
20
A
PRO
12
A
PRO
12
-0.03
IOVO_MELGA
UNP
1
130
P01004
LAAVSVDCSEYPKPACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
130
185
1M8B
1
56
P01004
A
1
1
56
1
PRO
engineered mutation
ASP
14
1M8B
A
P01004
UNP
143
14
3
anti-parallel
anti-parallel
A
THR
30
A
THR
30
A
TYR
31
A
TYR
31
A
LEU
23
A
LEU
23
A
GLY
25
A
GLY
25
A
LEU
50
A
LEU
50
A
PHE
53
A
PHE
53
1
P 1