1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Song, J. Laskowski Jr., M. Qasim, M.A. Markley, J.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 42 6380 6391 10.1021/bi034053f 12767219 Two conformational states of Turkey ovomucoid third domain at low pH: three-dimensional structures, internal dynamics, and interconversion kinetics and thermodynamics. 2003 10.2210/pdb1m8b/pdb pdb_00001m8b 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 6044.783 Ovomucoid RESIDUES 130-185; KAZAL-LIKE 3 (INHIBIT CHYMOTRYPIN, ELASTASE, ETC.) P14D 1 syn polymer no no LAAVSVDCSEYPKDACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC LAAVSVDCSEYPKDACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-09-04 1 1 2008-04-28 1 2 2011-07-13 1 3 2021-10-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details SOLUTION STRUCTURE OF THE T State OF TURKEY OVOMUCOID AT PH 2.5 RCSB Y RCSB 2002-07-24 REL The sequence for Ovomucoid fragment was chemically synthesized. It occurs naturally in Meleagris gallopavo (Common turkey). sample structures with favorable non-bond energy 50 20 3D_13C-separated_NOESY 3D_15N-separated_NOESY 2D NOESY 2D NOESY no salt added 2.5 ambient 298 K TORSION ANGLE DYNAMICS,SIMULATED ANNEALING 1 minimized average structure 1 mM 90% H2O/10% D2O 1 mM 100% D2O processing Felix 95 data analysis Sparky 3.72 structure solution DYANA 1.5 refinement DYANA 1.5 750 Bruker DMX 600 Bruker AMX 500 Bruker DMX LEU 1 n 1 LEU 1 A ALA 2 n 2 ALA 2 A ALA 3 n 3 ALA 3 A VAL 4 n 4 VAL 4 A SER 5 n 5 SER 5 A VAL 6 n 6 VAL 6 A ASP 7 n 7 ASP 7 A CYS 8 n 8 CYS 8 A SER 9 n 9 SER 9 A GLU 10 n 10 GLU 10 A TYR 11 n 11 TYR 11 A PRO 12 n 12 PRO 12 A LYS 13 n 13 LYS 13 A ASP 14 n 14 ASP 14 A ALA 15 n 15 ALA 15 A CYS 16 n 16 CYS 16 A THR 17 n 17 THR 17 A LEU 18 n 18 LEU 18 A GLU 19 n 19 GLU 19 A TYR 20 n 20 TYR 20 A ARG 21 n 21 ARG 21 A PRO 22 n 22 PRO 22 A LEU 23 n 23 LEU 23 A CYS 24 n 24 CYS 24 A GLY 25 n 25 GLY 25 A SER 26 n 26 SER 26 A ASP 27 n 27 ASP 27 A ASN 28 n 28 ASN 28 A LYS 29 n 29 LYS 29 A THR 30 n 30 THR 30 A TYR 31 n 31 TYR 31 A GLY 32 n 32 GLY 32 A ASN 33 n 33 ASN 33 A LYS 34 n 34 LYS 34 A CYS 35 n 35 CYS 35 A ASN 36 n 36 ASN 36 A PHE 37 n 37 PHE 37 A CYS 38 n 38 CYS 38 A ASN 39 n 39 ASN 39 A ALA 40 n 40 ALA 40 A VAL 41 n 41 VAL 41 A VAL 42 n 42 VAL 42 A GLU 43 n 43 GLU 43 A SER 44 n 44 SER 44 A ASN 45 n 45 ASN 45 A GLY 46 n 46 GLY 46 A THR 47 n 47 THR 47 A LEU 48 n 48 LEU 48 A THR 49 n 49 THR 49 A LEU 50 n 50 LEU 50 A SER 51 n 51 SER 51 A HIS 52 n 52 HIS 52 A PHE 53 n 53 PHE 53 A GLY 54 n 54 GLY 54 A LYS 55 n 55 LYS 55 A CYS 56 n 56 CYS 56 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 31 A O TYR 31 A N LEU 23 A N LEU 23 A N CYS 24 A N CYS 24 A O HIS 52 A O HIS 52 5 A A O H SER THR 44 47 1.59 6 A A O H CYS VAL 38 42 1.51 6 A A OE1 H GLU TYR 10 11 1.56 6 A A O HD22 GLU ASN 19 33 1.58 7 A A O HG1 SER THR 44 47 1.41 7 A A OE1 H GLU TYR 10 11 1.57 10 A A HH O TYR CYS 11 35 1.46 10 A A OE1 H GLU TYR 10 11 1.57 12 A A OE1 H GLU TYR 10 11 1.56 12 A A O HD21 CYS ASN 35 39 1.56 12 A A O H CYS VAL 38 42 1.58 13 A A O H CYS VAL 38 42 1.53 13 A A OE1 H GLU TYR 10 11 1.57 14 A A O H SER THR 44 47 1.57 15 A A HH O TYR CYS 11 35 1.51 15 A A O H CYS VAL 38 42 1.54 19 A A O HG1 SER THR 44 47 1.60 20 A A O H PRO GLY 22 54 1.52 20 A A O H CYS VAL 38 42 1.54 1 A ALA 2 45.63 73.03 1 A CYS 8 -155.07 25.69 1 A GLU 10 -153.67 22.51 1 A ASP 14 -95.13 54.88 1 A SER 44 -93.42 35.26 1 A ASN 45 57.00 17.70 2 A ALA 3 41.68 -161.09 2 A CYS 8 -151.48 26.50 2 A SER 9 -100.03 42.40 2 A GLU 10 -161.03 27.17 2 A ASN 28 71.03 39.99 2 A HIS 52 -171.09 -179.38 3 A ALA 2 57.68 -178.49 3 A VAL 4 50.90 -180.00 3 A SER 5 -179.98 119.77 3 A CYS 8 -155.26 25.94 3 A GLU 10 -143.86 15.95 4 A ALA 2 62.62 171.11 4 A SER 5 -178.79 108.50 4 A GLU 10 -165.77 28.55 4 A ASP 14 -88.29 48.21 4 A ALA 15 175.77 174.04 4 A SER 44 -85.67 46.68 5 A VAL 4 50.32 178.19 5 A SER 5 -178.26 143.69 5 A CYS 8 -149.51 35.32 5 A SER 9 -104.14 46.18 5 A GLU 10 -173.40 33.54 5 A ALA 15 179.66 160.41 5 A SER 44 -88.86 41.68 5 A ASN 45 48.71 24.18 6 A ALA 2 -176.06 114.24 6 A ALA 3 178.72 58.68 6 A VAL 4 50.70 179.58 6 A SER 5 179.27 151.67 6 A GLU 10 -172.66 -38.97 6 A TYR 11 -37.39 155.62 6 A ASP 14 -96.22 46.59 6 A ALA 15 174.95 165.16 6 A SER 44 -90.03 39.45 6 A ASN 45 59.71 15.76 7 A GLU 10 -164.88 -39.99 7 A TYR 11 -38.22 159.59 7 A LYS 55 -39.94 137.02 8 A ALA 2 65.01 178.05 8 A ALA 3 66.80 141.72 8 A CYS 8 -155.94 35.34 8 A SER 9 -101.66 41.19 8 A GLU 10 -161.00 27.06 8 A SER 44 -89.96 37.66 8 A ASN 45 58.87 16.62 8 A LYS 55 -41.52 152.89 9 A ALA 2 174.69 154.68 9 A ALA 3 51.25 179.90 9 A CYS 8 -155.64 26.14 9 A SER 9 -99.21 33.54 9 A GLU 10 -149.78 19.75 9 A ALA 15 175.95 159.24 10 A ALA 2 -177.52 69.41 10 A SER 5 178.96 132.04 10 A GLU 10 -172.93 -38.47 10 A TYR 11 -38.48 159.08 10 A ALA 15 -175.07 118.26 10 A GLU 19 -45.14 161.28 10 A ASN 28 70.63 35.56 10 A SER 44 -90.15 41.37 11 A ALA 2 68.26 -161.84 11 A ALA 3 63.13 73.81 11 A CYS 8 -155.23 33.01 11 A SER 9 -107.49 43.89 11 A GLU 10 -161.96 27.67 11 A ASP 14 -89.21 44.08 11 A ALA 15 -171.32 -178.71 11 A SER 44 -92.83 41.33 11 A ASN 45 55.94 18.38 12 A ALA 3 -179.57 90.28 12 A GLU 10 -165.58 -40.34 12 A TYR 11 -38.18 158.60 12 A ASP 14 -102.35 50.06 12 A ALA 15 -178.35 134.44 12 A ASN 28 78.07 37.53 13 A ALA 2 172.78 76.61 13 A SER 5 -174.31 119.35 13 A GLU 10 -177.68 -37.45 13 A TYR 11 -40.82 154.55 13 A SER 44 -87.95 44.92 13 A ASN 45 55.21 19.42 13 A LYS 55 -39.90 137.07 14 A ALA 2 -141.51 56.99 14 A ALA 3 -170.74 145.94 14 A SER 9 -90.87 33.36 14 A GLU 10 -142.19 14.31 14 A ASP 14 -116.41 73.22 14 A ALA 15 -176.89 -38.58 14 A CYS 16 57.56 -176.11 14 A SER 44 -88.95 46.84 14 A ASN 45 48.72 24.10 14 A LYS 55 -39.86 142.10 15 A VAL 4 -57.94 174.55 15 A CYS 8 -147.17 20.61 15 A SER 44 -99.88 41.74 15 A ASN 45 58.16 17.34 16 A SER 5 -179.18 127.52 16 A CYS 8 -154.79 24.81 16 A TYR 11 -43.36 166.86 16 A ASP 14 -116.83 71.78 16 A ALA 15 -175.11 -87.48 16 A CYS 16 66.85 152.82 16 A GLU 19 -39.30 139.29 16 A SER 44 -94.49 33.82 16 A HIS 52 -175.67 -176.40 16 A LYS 55 -39.93 140.40 17 A ALA 3 -176.13 57.29 17 A VAL 4 51.13 176.98 17 A CYS 8 -155.54 47.92 17 A GLU 10 -166.71 30.23 17 A ASN 45 80.59 -2.40 18 A ALA 2 -152.91 57.95 18 A ALA 3 -149.94 55.65 18 A GLU 10 -177.86 -37.01 18 A TYR 11 -44.02 169.30 18 A ALA 15 171.58 170.42 18 A SER 44 -91.57 44.01 19 A VAL 4 60.40 147.58 19 A SER 5 -172.50 90.17 19 A CYS 8 -150.80 64.66 19 A SER 9 -140.92 43.49 19 A GLU 10 -160.95 26.53 19 A ALA 15 162.97 134.04 19 A SER 44 -90.14 38.69 19 A ASN 45 59.69 16.05 20 A ALA 2 62.92 164.32 20 A VAL 4 50.62 179.58 20 A SER 5 176.80 138.41 20 A CYS 16 63.75 166.60 20 A GLU 19 -49.76 166.58 20 A SER 44 -90.68 36.28 20 A ASN 45 57.98 17.36 20 A LYS 55 -39.99 134.24 minimized average Solution structure of the C State of turkey ovomucoid at pH 2.5 1 N N A ASN 33 A ASN 33 HELX_P A SER 44 A SER 44 1 1 12 disulf 2.093 A CYS 8 A SG CYS 8 1_555 A CYS 38 A SG CYS 38 1_555 disulf 1.997 A CYS 16 A SG CYS 16 1_555 A CYS 35 A SG CYS 35 1_555 disulf 2.087 A CYS 24 A SG CYS 24 1_555 A CYS 56 A SG CYS 56 1_555 HYDROLASE INHIBITOR OMTKY3 CONFORMATIONAL TRANSITION CIS-TRANS ISOMERIZATION, HYDROLASE INHIBITOR A TYR 11 A TYR 11 1 A PRO 12 A PRO 12 0.04 A TYR 11 A TYR 11 2 A PRO 12 A PRO 12 0.02 A TYR 11 A TYR 11 3 A PRO 12 A PRO 12 0.02 A TYR 11 A TYR 11 4 A PRO 12 A PRO 12 -0.09 A TYR 11 A TYR 11 5 A PRO 12 A PRO 12 -0.04 A TYR 11 A TYR 11 6 A PRO 12 A PRO 12 -0.02 A TYR 11 A TYR 11 7 A PRO 12 A PRO 12 -0.04 A TYR 11 A TYR 11 8 A PRO 12 A PRO 12 0.04 A TYR 11 A TYR 11 9 A PRO 12 A PRO 12 -0.06 A TYR 11 A TYR 11 10 A PRO 12 A PRO 12 -0.04 A TYR 11 A TYR 11 11 A PRO 12 A PRO 12 -0.14 A TYR 11 A TYR 11 12 A PRO 12 A PRO 12 -0.04 A TYR 11 A TYR 11 13 A PRO 12 A PRO 12 0.11 A TYR 11 A TYR 11 14 A PRO 12 A PRO 12 0.04 A TYR 11 A TYR 11 15 A PRO 12 A PRO 12 0.00 A TYR 11 A TYR 11 16 A PRO 12 A PRO 12 -0.02 A TYR 11 A TYR 11 17 A PRO 12 A PRO 12 0.03 A TYR 11 A TYR 11 18 A PRO 12 A PRO 12 0.01 A TYR 11 A TYR 11 19 A PRO 12 A PRO 12 -0.02 A TYR 11 A TYR 11 20 A PRO 12 A PRO 12 -0.03 IOVO_MELGA UNP 1 130 P01004 LAAVSVDCSEYPKPACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC 130 185 1M8B 1 56 P01004 A 1 1 56 1 PRO engineered mutation ASP 14 1M8B A P01004 UNP 143 14 3 anti-parallel anti-parallel A THR 30 A THR 30 A TYR 31 A TYR 31 A LEU 23 A LEU 23 A GLY 25 A GLY 25 A LEU 50 A LEU 50 A PHE 53 A PHE 53 1 P 1