0.010939
0.006315
0.000000
0.000000
0.012631
0.000000
0.000000
0.000000
0.009280
0.00000
0.00000
0.00000
Saridakis, V.
Pai, E.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
91.418
91.418
107.755
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C21 H27 N7 O14 P2
663.425
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
S
P
N
251
N
O
N
252
N
O
N
253
N
O
N
254
N
C
N
255
R
C
N
256
N
O
N
257
S
C
N
258
N
O
N
259
R
C
N
260
N
O
N
261
R
C
Y
262
N
N
Y
263
N
C
Y
264
N
N
Y
265
N
C
Y
266
N
C
N
267
N
N
Y
268
N
N
Y
269
N
C
Y
270
N
N
Y
271
N
C
N
272
N
O
N
273
N
P
N
274
N
O
N
275
N
O
N
276
N
O
N
277
N
C
N
278
R
C
N
279
N
O
N
280
S
C
N
281
N
O
N
282
R
C
N
283
N
O
N
284
R
C
Y
285
N
N
Y
286
N
C
Y
287
N
C
N
288
N
C
N
289
N
O
N
290
N
N
Y
291
N
C
Y
292
N
C
Y
293
N
C
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
N
N
345
S
C
N
346
N
C
N
347
N
O
N
348
N
C
N
349
N
C
N
350
N
C
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
N
C
N
366
N
O
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
S
N
376
N
O
N
377
N
O
N
378
N
O
N
379
N
O
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
R
C
N
385
N
O
N
386
N
C
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
N
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
N
411
N
O
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
N
N
425
S
C
N
426
N
C
N
427
N
O
N
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
N
435
N
O
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
N
N
449
S
C
N
450
N
C
N
451
N
O
N
452
N
C
N
453
N
C
N
454
N
C
N
455
N
O
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
Y
260
N
sing
Y
261
N
sing
Y
262
N
doub
N
263
N
sing
Y
264
N
sing
Y
265
N
sing
Y
266
N
doub
N
267
N
sing
Y
268
N
doub
N
269
N
sing
N
270
N
sing
Y
271
N
sing
Y
272
N
doub
N
273
N
sing
Y
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
Y
297
N
sing
Y
298
N
doub
Y
299
N
doub
N
300
N
sing
N
301
N
sing
Y
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
Y
323
N
doub
Y
324
N
sing
Y
325
N
sing
N
326
N
sing
Y
327
N
doub
N
328
N
sing
Y
329
N
doub
N
330
N
sing
Y
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
doub
Y
401
N
sing
Y
402
N
sing
N
403
N
sing
Y
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
Y
424
N
doub
Y
425
N
sing
Y
426
N
sing
N
427
N
sing
Y
428
N
doub
N
429
N
sing
Y
430
N
doub
N
431
N
sing
Y
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
doub
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
278
34356
34363
10.1074/jbc.M205369200
12810729
Mutational, Structural, and Kinetic Studies of the ATP-binding Site of
Methanobacterium thermoautotrophicum Nicotinamide Mononucleotide
Adenylyltransferase
2003
10.2210/pdb1m8j/pdb
pdb_00001m8j
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2000-11-19
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
14-BM-C
APS
1.000
SYNCHROTRON
APS BEAMLINE 14-BM-C
20478.613
Nicotinamide-nucleotide Adenylyltransferase
2.7.7.1
R136A
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
663.425
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
1
syn
non-polymer
18.015
water
49
nat
water
NAD(+) pyrophosphorylase, NAD(+) diphosphorylase, NMN adenylyltransferase
no
no
VMTMRGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLSHSIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQD
IECNALWVGHIKMLTPPFDRVYSGNPLVQRLFSEDGYEVTAPPLFYRDRYSGTEVARRMLDDGDWRSLLPESVVEVIDEI
NGVERIKHLAKKEVSELGGIS
VMTMRGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLSHSIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQD
IECNALWVGHIKMLTPPFDRVYSGNPLVQRLFSEDGYEVTAPPLFYRDRYSGTEVARRMLDDGDWRSLLPESVVEVIDEI
NGVERIKHLAKKEVSELGGIS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Methanothermobacter
Escherichia
Escherichia coli
sample
mth0150
145262
Methanothermobacter thermautotrophicus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pET15B
1
3.17
61.22
VAPOR DIFFUSION, HANGING DROP
8
1.5 M Ammonium Sulfate, 100 mM Tris, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Database references
Derived calculations
Data collection
Refinement description
1
0
2003-07-15
1
1
2008-04-28
1
2
2011-07-13
1
3
2021-10-27
1
4
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE MUTANT R11A COMPLEXED WITH NAD
NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE MUTANT R11K COMPLEXED WITH NAD
NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE MUTANT H19K COMPLEXED WITH NAD
RCSB
Y
RCSB
2002-07-25
REL
SO4
SULFATE ION
NAD
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
HOH
water
1EJ2
pdb entry 1ej2
PDB
experimental model
SO4
1759
2
SO4
SO4
1759
A
NAD
1339
3
NAD
NAD
1339
A
HOH
1002
4
HOH
HOH
1002
A
HOH
1003
4
HOH
HOH
1003
A
HOH
1004
4
HOH
HOH
1004
A
HOH
1005
4
HOH
HOH
1005
A
HOH
1006
4
HOH
HOH
1006
A
HOH
1007
4
HOH
HOH
1007
A
HOH
1008
4
HOH
HOH
1008
A
HOH
1009
4
HOH
HOH
1009
A
HOH
1010
4
HOH
HOH
1010
A
HOH
1011
4
HOH
HOH
1011
A
HOH
1012
4
HOH
HOH
1012
A
HOH
1013
4
HOH
HOH
1013
A
HOH
1014
4
HOH
HOH
1014
A
HOH
1015
4
HOH
HOH
1015
A
HOH
1016
4
HOH
HOH
1016
A
HOH
1017
4
HOH
HOH
1017
A
HOH
1018
4
HOH
HOH
1018
A
HOH
1019
4
HOH
HOH
1019
A
HOH
1020
4
HOH
HOH
1020
A
HOH
1021
4
HOH
HOH
1021
A
HOH
1022
4
HOH
HOH
1022
A
HOH
1024
4
HOH
HOH
1024
A
HOH
1025
4
HOH
HOH
1025
A
HOH
1026
4
HOH
HOH
1026
A
HOH
1027
4
HOH
HOH
1027
A
HOH
1028
4
HOH
HOH
1028
A
HOH
1030
4
HOH
HOH
1030
A
HOH
1031
4
HOH
HOH
1031
A
HOH
1032
4
HOH
HOH
1032
A
HOH
1033
4
HOH
HOH
1033
A
HOH
1034
4
HOH
HOH
1034
A
HOH
1035
4
HOH
HOH
1035
A
HOH
1036
4
HOH
HOH
1036
A
HOH
1037
4
HOH
HOH
1037
A
HOH
1038
4
HOH
HOH
1038
A
HOH
1039
4
HOH
HOH
1039
A
HOH
1040
4
HOH
HOH
1040
A
HOH
1041
4
HOH
HOH
1041
A
HOH
1042
4
HOH
HOH
1042
A
HOH
1043
4
HOH
HOH
1043
A
HOH
1044
4
HOH
HOH
1044
A
HOH
1045
4
HOH
HOH
1045
A
HOH
1046
4
HOH
HOH
1046
A
HOH
1047
4
HOH
HOH
1047
A
HOH
1048
4
HOH
HOH
1048
A
HOH
1049
4
HOH
HOH
1049
A
HOH
1050
4
HOH
HOH
1050
A
HOH
1051
4
HOH
HOH
1051
A
HOH
1052
4
HOH
HOH
1052
A
n
1
1
A
n
2
2
A
n
3
3
A
MET
4
n
4
MET
4
A
ARG
5
n
5
ARG
5
A
GLY
6
n
6
GLY
6
A
LEU
7
n
7
LEU
7
A
LEU
8
n
8
LEU
8
A
VAL
9
n
9
VAL
9
A
GLY
10
n
10
GLY
10
A
ARG
11
n
11
ARG
11
A
MET
12
n
12
MET
12
A
GLN
13
n
13
GLN
13
A
PRO
14
n
14
PRO
14
A
PHE
15
n
15
PHE
15
A
HIS
16
n
16
HIS
16
A
ARG
17
n
17
ARG
17
A
GLY
18
n
18
GLY
18
A
HIS
19
n
19
HIS
19
A
LEU
20
n
20
LEU
20
A
GLN
21
n
21
GLN
21
A
VAL
22
n
22
VAL
22
A
ILE
23
n
23
ILE
23
A
LYS
24
n
24
LYS
24
A
SER
25
n
25
SER
25
A
ILE
26
n
26
ILE
26
A
LEU
27
n
27
LEU
27
A
GLU
28
n
28
GLU
28
A
GLU
29
n
29
GLU
29
A
VAL
30
n
30
VAL
30
A
ASP
31
n
31
ASP
31
A
GLU
32
n
32
GLU
32
A
LEU
33
n
33
LEU
33
A
ILE
34
n
34
ILE
34
A
ILE
35
n
35
ILE
35
A
CYS
36
n
36
CYS
36
A
ILE
37
n
37
ILE
37
A
GLY
38
n
38
GLY
38
A
SER
39
n
39
SER
39
A
ALA
40
n
40
ALA
40
A
GLN
41
n
41
GLN
41
A
LEU
42
n
42
LEU
42
A
SER
43
n
43
SER
43
A
HIS
44
n
44
HIS
44
A
SER
45
n
45
SER
45
A
ILE
46
n
46
ILE
46
A
ARG
47
n
47
ARG
47
A
ASP
48
n
48
ASP
48
A
PRO
49
n
49
PRO
49
A
PHE
50
n
50
PHE
50
A
THR
51
n
51
THR
51
A
ALA
52
n
52
ALA
52
A
GLY
53
n
53
GLY
53
A
GLU
54
n
54
GLU
54
A
ARG
55
n
55
ARG
55
A
VAL
56
n
56
VAL
56
A
MET
57
n
57
MET
57
A
MET
58
n
58
MET
58
A
LEU
59
n
59
LEU
59
A
THR
60
n
60
THR
60
A
LYS
61
n
61
LYS
61
A
ALA
62
n
62
ALA
62
A
LEU
63
n
63
LEU
63
A
SER
64
n
64
SER
64
A
GLU
65
n
65
GLU
65
A
ASN
66
n
66
ASN
66
A
GLY
67
n
67
GLY
67
A
ILE
68
n
68
ILE
68
A
PRO
69
n
69
PRO
69
A
ALA
70
n
70
ALA
70
A
SER
71
n
71
SER
71
A
ARG
72
n
72
ARG
72
A
TYR
73
n
73
TYR
73
A
TYR
74
n
74
TYR
74
A
ILE
75
n
75
ILE
75
A
ILE
76
n
76
ILE
76
A
PRO
77
n
77
PRO
77
A
VAL
78
n
78
VAL
78
A
GLN
79
n
79
GLN
79
A
ASP
80
n
80
ASP
80
A
ILE
81
n
81
ILE
81
A
GLU
82
n
82
GLU
82
A
CYS
83
n
83
CYS
83
A
ASN
84
n
84
ASN
84
A
ALA
85
n
85
ALA
85
A
LEU
86
n
86
LEU
86
A
TRP
87
n
87
TRP
87
A
VAL
88
n
88
VAL
88
A
GLY
89
n
89
GLY
89
A
HIS
90
n
90
HIS
90
A
ILE
91
n
91
ILE
91
A
LYS
92
n
92
LYS
92
A
MET
93
n
93
MET
93
A
LEU
94
n
94
LEU
94
A
THR
95
n
95
THR
95
A
PRO
96
n
96
PRO
96
A
PRO
97
n
97
PRO
97
A
PHE
98
n
98
PHE
98
A
ASP
99
n
99
ASP
99
A
ARG
100
n
100
ARG
100
A
VAL
101
n
101
VAL
101
A
TYR
102
n
102
TYR
102
A
SER
103
n
103
SER
103
A
GLY
104
n
104
GLY
104
A
ASN
105
n
105
ASN
105
A
PRO
106
n
106
PRO
106
A
LEU
107
n
107
LEU
107
A
VAL
108
n
108
VAL
108
A
GLN
109
n
109
GLN
109
A
ARG
110
n
110
ARG
110
A
LEU
111
n
111
LEU
111
A
PHE
112
n
112
PHE
112
A
SER
113
n
113
SER
113
A
GLU
114
n
114
GLU
114
A
ASP
115
n
115
ASP
115
A
GLY
116
n
116
GLY
116
A
TYR
117
n
117
TYR
117
A
GLU
118
n
118
GLU
118
A
VAL
119
n
119
VAL
119
A
THR
120
n
120
THR
120
A
ALA
121
n
121
ALA
121
A
PRO
122
n
122
PRO
122
A
PRO
123
n
123
PRO
123
A
LEU
124
n
124
LEU
124
A
PHE
125
n
125
PHE
125
A
TYR
126
n
126
TYR
126
A
ARG
127
n
127
ARG
127
A
ASP
128
n
128
ASP
128
A
ARG
129
n
129
ARG
129
A
TYR
130
n
130
TYR
130
A
SER
131
n
131
SER
131
A
GLY
132
n
132
GLY
132
A
THR
133
n
133
THR
133
A
GLU
134
n
134
GLU
134
A
VAL
135
n
135
VAL
135
A
ALA
136
n
136
ALA
136
A
ARG
137
n
137
ARG
137
A
ARG
138
n
138
ARG
138
A
MET
139
n
139
MET
139
A
LEU
140
n
140
LEU
140
A
ASP
141
n
141
ASP
141
A
ASP
142
n
142
ASP
142
A
GLY
143
n
143
GLY
143
A
ASP
144
n
144
ASP
144
A
TRP
145
n
145
TRP
145
A
ARG
146
n
146
ARG
146
A
SER
147
n
147
SER
147
A
LEU
148
n
148
LEU
148
A
LEU
149
n
149
LEU
149
A
PRO
150
n
150
PRO
150
A
GLU
151
n
151
GLU
151
A
SER
152
n
152
SER
152
A
VAL
153
n
153
VAL
153
A
VAL
154
n
154
VAL
154
A
GLU
155
n
155
GLU
155
A
VAL
156
n
156
VAL
156
A
ILE
157
n
157
ILE
157
A
ASP
158
n
158
ASP
158
A
GLU
159
n
159
GLU
159
A
ILE
160
n
160
ILE
160
A
ASN
161
n
161
ASN
161
A
GLY
162
n
162
GLY
162
A
VAL
163
n
163
VAL
163
A
GLU
164
n
164
GLU
164
A
ARG
165
n
165
ARG
165
A
ILE
166
n
166
ILE
166
A
LYS
167
n
167
LYS
167
A
HIS
168
n
168
HIS
168
A
LEU
169
n
169
LEU
169
A
ALA
170
n
170
ALA
170
A
n
171
171
A
n
172
172
A
n
173
173
A
n
174
174
A
n
175
175
A
n
176
176
A
n
177
177
A
n
178
178
A
n
179
179
A
n
180
180
A
n
181
181
A
author_and_software_defined_assembly
PISA,PQS
6
hexameric
20550
-243
36680
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_655
-y+1,x-y,z
crystal symmetry operation
91.4180000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_665
-x+y+1,-x+1,z
crystal symmetry operation
45.7090000000
79.1703103632
0.0000000000
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
45.7090000000
79.1703103632
53.8775000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
11_655
-x+y+1,y,-z+1/2
crystal symmetry operation
91.4180000000
0.0000000000
53.8775000000
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
12_555
x,x-y,-z+1/2
crystal symmetry operation
0.0000000000
0.0000000000
53.8775000000
A
O
TYR
74
A
O
TYR
74
A
N
ILE
35
A
N
ILE
35
A
O
ILE
34
A
O
ILE
34
A
N
LEU
8
A
N
LEU
8
A
N
LEU
7
A
N
LEU
7
A
O
TYR
102
A
O
TYR
102
A
N
VAL
101
A
N
VAL
101
A
O
THR
120
A
O
THR
120
1
A
VAL
1
A
VAL
1
1
Y
1
A
MET
2
A
MET
2
1
Y
1
A
THR
3
A
THR
3
1
Y
1
A
LYS
171
A
LYS
171
1
Y
1
A
LYS
172
A
LYS
172
1
Y
1
A
GLU
173
A
GLU
173
1
Y
1
A
VAL
174
A
VAL
174
1
Y
1
A
SER
175
A
SER
175
1
Y
1
A
GLU
176
A
GLU
176
1
Y
1
A
LEU
177
A
LEU
177
1
Y
1
A
GLY
178
A
GLY
178
1
Y
1
A
GLY
179
A
GLY
179
1
Y
1
A
ILE
180
A
ILE
180
1
Y
1
A
SER
181
A
SER
181
1
Y
1
A
A
OE1
OE1
GLN
GLN
79
79
1.99
1_555
12_555
1
A
GLN
13
-110.69
75.85
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
NAD.PARAM
NAD.TOP
CIS_PEPTIDE.PARAM
CIS_PEPTIDE.TOP
36.8
-1.44
4.02
0.00
-1.44
0.00
2.87
0.265
0.008
0.225
0.225
2.40
14.96
1062
10271
10.3
94.5
RANDOM
521275.62
521275.62
0
1
RESTRAINED
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
pdb entry 1ej2
FLAT MODEL
46.833
0.376268
0.39
.31
5
0.37
0.28
2.40
14.96
49
1432
49
0
1334
0.006
1.2
21.4
1.01
3.95
1.50
6.19
2.00
7.93
2.00
11.74
2.50
0.363
0.030
0.279
2.55
150
1412
6
9.6
88.8
31.2
2.4
30.0
1M8J
10961
-3
0.085
0.094
1
49.8
29.5
100.0
0.298
2.4
2.49
13.4
1052
0.345
1
15
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
Crystal Structure Of Methanobacterium Thermoautotrophicum Nicotinamide Mononucleotide Adenylyltransferase Mutant R136A complexed with NAD
1
N
N
2
N
N
3
N
N
4
N
N
The protein is hexameric.
A
HIS
16
A
HIS
16
HELX_P
A
LEU
27
A
LEU
27
1
1
12
A
THR
51
A
THR
51
HELX_P
A
ASN
66
A
ASN
66
1
2
16
A
PRO
69
A
PRO
69
HELX_P
A
SER
71
A
SER
71
5
3
3
A
CYS
83
A
CYS
83
HELX_P
A
ALA
85
A
ALA
85
5
4
3
A
LEU
86
A
LEU
86
HELX_P
A
THR
95
A
THR
95
1
5
10
A
ASN
105
A
ASN
105
HELX_P
A
ASP
115
A
ASP
115
1
6
11
A
SER
131
A
SER
131
HELX_P
A
ASP
141
A
ASP
141
1
7
11
A
TRP
145
A
TRP
145
HELX_P
A
LEU
149
A
LEU
149
5
8
5
A
PRO
150
A
PRO
150
HELX_P
A
ILE
160
A
ILE
160
1
9
11
A
ASN
161
A
ASN
161
HELX_P
A
ALA
170
A
ALA
170
1
10
10
TRANSFERASE
nucleotidyltransferase HXGH active site motif, TRANSFERASE
A
GLN
13
A
GLN
13
1
A
PRO
14
A
PRO
14
-0.26
NADM_METTH
UNP
1
1
O26253
MRGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLSHSIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQDIEC
NALWVGHIKMLTPPFDRVYSGNPLVQRLFSEDGYEVTAPPLFYRDRYSGTEVRRRMLDDGDWRSLLPESVVEVIDEINGV
ERIKHLAKKEVSELGGIS
1
178
1M8J
4
181
O26253
A
1
4
181
1
cloning artifact
VAL
1
1M8J
A
O26253
UNP
1
1
cloning artifact
MET
2
1M8J
A
O26253
UNP
2
1
cloning artifact
THR
3
1M8J
A
O26253
UNP
3
1
ARG
engineered mutation
ALA
136
1M8J
A
O26253
UNP
133
136
5
parallel
parallel
parallel
parallel
A
TYR
73
A
TYR
73
A
PRO
77
A
PRO
77
A
GLU
32
A
GLU
32
A
ILE
37
A
ILE
37
A
ARG
5
A
ARG
5
A
GLY
10
A
GLY
10
A
ARG
100
A
ARG
100
A
TYR
102
A
TYR
102
A
GLU
118
A
GLU
118
A
THR
120
A
THR
120
BINDING SITE FOR RESIDUE SO4 A 1759
A
SO4
1759
Software
8
BINDING SITE FOR RESIDUE NAD A 1339
A
NAD
1339
Software
25
A
HIS
16
A
HIS
16
8
1_555
A
HIS
19
A
HIS
19
8
1_555
A
TYR
130
A
TYR
130
8
1_555
A
SER
131
A
SER
131
8
1_555
A
GLY
132
A
GLY
132
8
1_555
A
HOH
1009
D
HOH
8
1_555
A
HOH
1034
D
HOH
8
1_555
A
NAD
1339
C
NAD
8
1_555
A
VAL
9
A
VAL
9
25
1_555
A
GLY
10
A
GLY
10
25
1_555
A
ARG
11
A
ARG
11
25
1_555
A
MET
12
A
MET
12
25
1_555
A
HIS
16
A
HIS
16
25
1_555
A
GLY
18
A
GLY
18
25
1_555
A
HIS
19
A
HIS
19
25
1_555
A
GLY
38
A
GLY
38
25
1_555
A
SER
39
A
SER
39
25
1_555
A
ASP
80
A
ASP
80
25
1_555
A
ILE
81
A
ILE
81
25
1_555
A
ASN
84
A
ASN
84
25
1_555
A
TRP
87
A
TRP
87
25
1_555
A
SER
103
A
SER
103
25
1_555
A
GLY
104
A
GLY
104
25
1_555
A
ASN
105
A
ASN
105
25
1_555
A
LEU
107
A
LEU
107
25
1_555
A
PRO
123
A
PRO
123
25
1_555
A
LEU
124
A
LEU
124
25
1_555
A
PHE
125
A
PHE
125
25
1_555
A
TYR
130
A
TYR
130
25
1_555
A
HOH
1005
D
HOH
25
1_555
A
HOH
1009
D
HOH
25
1_555
A
HOH
1031
D
HOH
25
1_555
A
SO4
1759
B
SO4
25
1_555
182
P 63 2 2