1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Laederach, A. Andreotti, A.H. Fulton, D.B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 41 12359 12368 10.1021/bi026185z 12369825 Solution and micelle-bound structures of Tachyplesin I and its active linear derivatives 2002 10.2210/pdb1ma4/pdb pdb_00001ma4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 2514.931 Tachyplesin 1 C3Y C7Y C12Y C16Y 1 syn polymer no no KWYFRVYYRGIYYRRYR KWYFRVYYRGIYYRRYR A polypeptide(L) n n n n n n n n n n n n n n n n n database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-10-16 1 1 2008-04-28 1 2 2011-07-13 1 3 2021-10-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details Tachyplesin I Wild type peptide TACHYPLESIN I IN THE PRESENCE OF DODECYLPHOSPHOCHOLINE MICELLES TPY4 TACHYPLESIN I TYROSINE MUTANT IN THE PRESENCE OF DODECYLPHOSPHOCHOLINE MICELLES RCSB Y RCSB 2002-07-31 REL REL The peptide was chemically synthesized using Fmoc solid state synthesis. The sequence of the peptide is naturally found in Tachypleus Tridentatus (Japanese Horeshoe Crab). sample For reasons of overlap, data was collected at both 298K and 277K. NOEs from spectra at both temperatures were used. structures with the lowest energy 300 31 2D NOESY 2D TOCSY 0.15% 3.0 ambient 298 K 0.15% 3.0 ambient 277 K Simulated Annealing with complete cross-validation 1 minimized average structure TPY4 17 residue peptide 90%/10% H2O/D2O and 99% D2O with 0.15% TFA, pH 3.0 Brunger, Adams, Clore, DeLano, Gros, Grosse-Kunstleve, Jiang, Kuszewski, Nilges, Pannu, Read, Rice, Simonson, Warren structure solution CNS 1.0 Bruker collection XwinNMR 6.1 Bruker processing XwinNMR 6.1 Brunger, Adams, Clore, DeLano, Gros, Grosse-Kunstleve, Jiang, Kuszewski, Nilges, Pannu, Read, Rice, Simonson, Warren refinement CNS 1.0 500 Bruker DRX LYS 1 n 1 LYS 1 A TRP 2 n 2 TRP 2 A TYR 3 n 3 TYR 3 A PHE 4 n 4 PHE 4 A ARG 5 n 5 ARG 5 A VAL 6 n 6 VAL 6 A TYR 7 n 7 TYR 7 A TYR 8 n 8 TYR 8 A ARG 9 n 9 ARG 9 A GLY 10 n 10 GLY 10 A ILE 11 n 11 ILE 11 A TYR 12 n 12 TYR 12 A TYR 13 n 13 TYR 13 A ARG 14 n 14 ARG 14 A ARG 15 n 15 ARG 15 A TYR 16 n 16 TYR 16 A ARG 17 n 17 ARG 17 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O H VAL TYR 6 8 1.51 1 A A O N VAL TYR 6 8 1.97 1 A A O N ILE TYR 11 13 2.16 3 A A O N TYR ARG 7 9 2.17 4 A A O H TYR GLY 7 10 1.55 4 A A O H ILE TYR 11 13 1.58 4 A A O N ILE TYR 11 13 2.15 7 A A O H TYR ARG 7 9 1.51 8 A A O N VAL TYR 6 8 2.07 10 A A O N ILE TYR 11 13 2.10 12 A A O N VAL TYR 6 8 2.16 14 A A O H TYR ARG 7 9 1.57 15 A A O H VAL TYR 6 8 1.40 15 A A O N VAL TYR 6 8 2.11 16 A A O H VAL TYR 6 8 1.43 16 A A O N VAL TYR 6 8 2.10 18 A A O N ILE TYR 11 13 2.11 19 A A O H VAL TYR 6 8 1.45 19 A A O N VAL TYR 6 8 2.13 21 A A O H VAL TYR 6 8 1.58 21 A A O N VAL TYR 6 8 1.97 22 A A O H VAL TYR 6 8 1.37 22 A A O H ILE TYR 11 13 1.48 22 A A O N ILE TYR 11 13 2.16 22 A A O N VAL TYR 6 8 2.17 23 A A O N VAL TYR 6 8 2.07 23 A A O N TYR ARG 3 5 2.17 24 A A O H VAL TYR 6 8 1.37 24 A A O N VAL TYR 6 8 2.12 25 A A O N ILE TYR 11 13 2.17 26 A A O H VAL TYR 6 8 1.47 26 A A O H TYR GLY 7 10 1.59 26 A A O N VAL TYR 6 8 2.11 27 A A O H TYR GLY 7 10 1.55 28 A A O N VAL TYR 6 8 2.08 29 A A O H VAL TYR 6 8 1.41 29 A A O N VAL TYR 6 8 2.06 30 A A O H TYR GLY 7 10 1.57 1 A TRP 2 -66.72 -148.84 1 A TYR 3 -128.58 -91.17 1 A PHE 4 159.84 -40.89 1 A ARG 5 -158.78 -74.27 1 A VAL 6 53.40 -76.63 1 A TYR 7 8.21 -41.92 1 A TYR 8 51.79 -81.79 1 A ILE 11 165.66 64.27 1 A TYR 12 30.44 -58.28 1 A TYR 13 85.48 172.27 1 A ARG 14 -60.58 85.76 2 A TRP 2 -116.42 -70.88 2 A TYR 3 141.92 -152.69 2 A PHE 4 148.71 -44.92 2 A ARG 5 1.46 107.78 2 A VAL 6 -137.19 -36.59 2 A TYR 7 -15.42 -42.11 2 A TYR 8 32.60 68.24 2 A ILE 11 179.78 65.05 2 A TYR 12 12.49 95.34 2 A TYR 13 -92.85 -143.79 3 A TRP 2 -67.84 -146.71 3 A TYR 3 -131.74 -132.50 3 A PHE 4 164.05 -140.71 3 A ARG 5 -69.53 46.31 3 A TYR 8 41.05 -67.49 3 A ILE 11 168.60 59.68 3 A TYR 12 37.22 -63.90 3 A TYR 13 87.98 -70.15 3 A ARG 14 52.87 100.80 3 A TYR 16 23.88 -141.50 4 A TRP 2 -63.22 -135.12 4 A TYR 3 -145.66 11.32 4 A PHE 4 16.59 -89.10 4 A ARG 5 -111.33 -70.99 4 A VAL 6 55.65 -82.60 4 A TYR 7 77.97 -34.97 4 A TYR 8 61.28 -76.38 4 A ILE 11 167.66 72.13 4 A TYR 12 29.02 -55.41 4 A TYR 13 80.33 -90.76 4 A ARG 14 153.33 37.31 4 A ARG 15 43.46 178.77 4 A TYR 16 -161.37 -48.10 5 A TYR 3 48.83 -124.69 5 A PHE 4 178.71 -133.20 5 A ARG 5 -67.07 68.26 5 A TYR 8 48.63 -79.46 5 A ILE 11 164.67 61.56 5 A TYR 12 37.74 -67.35 5 A TYR 13 88.74 35.89 5 A ARG 14 -45.12 96.70 5 A ARG 15 -61.46 -81.77 5 A TYR 16 -179.56 -28.11 6 A TRP 2 -73.59 -147.43 6 A TYR 3 -161.83 113.93 6 A PHE 4 -61.29 -129.35 6 A ARG 5 -49.60 -93.70 6 A TYR 8 44.08 -68.95 6 A ARG 9 -140.04 34.14 6 A ILE 11 164.73 59.83 6 A TYR 12 39.78 -67.90 6 A TYR 13 91.87 27.43 6 A ARG 14 48.58 -173.31 6 A TYR 16 -62.37 -155.56 7 A TRP 2 -62.85 -148.96 7 A TYR 3 -143.62 18.64 7 A PHE 4 23.64 -76.30 7 A ARG 5 -138.57 -54.43 7 A VAL 6 41.05 105.54 7 A TYR 7 -174.37 -35.17 7 A TYR 8 53.07 -67.43 7 A ARG 9 -145.65 43.50 7 A ILE 11 -161.77 48.88 7 A TYR 12 -16.91 137.04 8 A TRP 2 -66.14 -145.18 8 A TYR 3 -132.51 -61.21 8 A PHE 4 170.55 -147.23 8 A ARG 5 -60.28 -130.53 8 A VAL 6 96.61 -44.93 8 A TYR 7 7.57 -53.85 8 A TYR 8 41.67 90.87 8 A ARG 9 35.79 34.33 8 A ILE 11 170.52 62.18 8 A TYR 12 38.99 -64.90 8 A TYR 13 89.56 34.21 8 A ARG 14 175.17 178.27 8 A ARG 15 -176.20 57.18 9 A TRP 2 -85.59 -158.92 9 A TYR 3 -150.56 -92.51 9 A PHE 4 -176.29 -64.42 9 A TYR 8 22.84 54.55 9 A ARG 9 97.76 18.09 9 A ILE 11 167.05 54.30 9 A TYR 12 39.42 -63.50 9 A TYR 13 85.73 62.19 9 A ARG 14 82.79 -0.92 9 A ARG 15 25.33 110.30 9 A TYR 16 -58.72 -156.33 10 A TRP 2 -64.46 -148.33 10 A TYR 3 -126.21 -91.90 10 A PHE 4 153.09 -136.80 10 A TYR 8 44.63 -80.08 10 A ILE 11 -174.84 76.84 10 A TYR 12 26.40 -60.27 10 A TYR 13 88.53 -150.31 10 A ARG 14 -39.84 -86.12 10 A ARG 15 47.14 73.88 11 A TRP 2 -67.50 -160.55 11 A TYR 3 -115.37 -109.20 11 A PHE 4 -165.91 -149.35 11 A TYR 7 -96.83 -76.31 11 A TYR 8 57.14 -87.23 11 A ILE 11 155.53 61.97 11 A TYR 12 43.29 -72.37 11 A TYR 13 91.17 -169.66 11 A ARG 15 -46.10 151.50 11 A TYR 16 -67.98 -159.96 12 A TRP 2 -61.92 -149.08 12 A TYR 3 -141.17 12.97 12 A PHE 4 21.03 -145.21 12 A ARG 5 -56.80 -152.21 12 A VAL 6 108.56 -43.74 12 A TYR 7 1.04 -48.02 12 A TYR 8 42.54 84.02 12 A ARG 9 47.50 28.15 12 A ILE 11 128.58 89.18 12 A TYR 12 -20.34 134.91 12 A ARG 14 -137.47 -46.07 12 A TYR 16 -113.19 -156.59 13 A TRP 2 -60.26 -156.45 13 A TYR 3 -121.58 -121.32 13 A PHE 4 171.25 -135.34 13 A ARG 5 -45.77 -79.19 13 A VAL 6 38.53 93.20 13 A TYR 7 -159.37 -35.78 13 A TYR 8 46.62 -85.57 13 A ILE 11 176.71 68.91 13 A TYR 12 9.28 98.79 14 A TYR 3 35.19 -119.90 14 A PHE 4 -171.36 -59.74 14 A ARG 5 -152.44 23.69 14 A TYR 7 -20.54 -36.91 14 A TYR 8 47.07 -63.80 14 A ARG 9 -145.46 29.89 14 A ILE 11 162.62 71.49 14 A TYR 12 23.21 -61.40 14 A TYR 13 80.11 -175.25 14 A ARG 14 58.19 158.89 14 A ARG 15 -159.10 40.79 14 A TYR 16 -90.04 -159.24 15 A TRP 2 -67.04 -147.32 15 A TYR 3 -139.52 -87.53 15 A PHE 4 167.35 -48.49 15 A ARG 5 -160.55 -65.07 15 A VAL 6 50.76 -83.56 15 A TYR 7 46.53 -61.92 15 A TYR 8 33.23 85.42 15 A ARG 9 47.22 25.70 15 A ILE 11 169.77 56.45 15 A TYR 12 46.12 -72.54 15 A TYR 13 92.52 132.58 15 A ARG 14 38.29 -87.41 15 A ARG 15 -62.24 -127.97 15 A TYR 16 -163.10 -162.18 16 A TRP 2 -72.00 -150.31 16 A TYR 3 -116.78 -80.60 16 A PHE 4 158.67 -46.37 16 A ARG 5 -152.79 -70.19 16 A VAL 6 52.87 -84.82 16 A TYR 7 44.80 -62.77 16 A TYR 8 39.84 87.36 16 A ARG 9 42.94 27.26 16 A ILE 11 172.39 57.05 16 A TYR 12 45.08 -72.54 16 A TYR 13 83.21 158.04 17 A TRP 2 -60.39 -150.90 17 A TYR 3 -119.64 -79.84 17 A PHE 4 160.78 -138.16 17 A TYR 8 29.10 -123.86 17 A ILE 11 168.63 -22.85 17 A TYR 12 126.33 -43.43 17 A TYR 13 79.23 -58.27 17 A ARG 14 -156.09 -57.55 18 A TRP 2 -71.07 -162.92 18 A TYR 3 -111.87 -144.87 18 A PHE 4 167.87 -143.28 18 A ARG 5 -77.68 -152.02 18 A TYR 8 30.24 97.62 18 A ARG 9 47.68 22.18 18 A ILE 11 173.08 69.73 18 A TYR 12 29.36 -59.81 18 A TYR 13 91.75 -168.24 18 A ARG 14 -40.67 72.36 18 A ARG 15 165.23 137.34 18 A TYR 16 177.94 -167.26 19 A TRP 2 -68.51 -151.92 19 A TYR 3 -119.58 -125.00 19 A PHE 4 -176.75 -46.77 19 A ARG 5 -165.96 -98.83 19 A VAL 6 59.44 -79.33 19 A TYR 7 45.81 -63.66 19 A TYR 8 41.70 88.90 19 A ARG 9 37.54 32.68 19 A ILE 11 176.41 48.97 19 A TYR 12 45.66 -68.76 19 A TYR 13 91.78 71.45 19 A ARG 14 -93.16 -140.96 20 A TYR 3 40.25 -102.47 20 A PHE 4 175.99 -119.23 20 A ARG 5 -57.42 -71.52 20 A VAL 6 49.43 21.03 20 A TYR 8 25.51 52.65 20 A ARG 9 92.05 23.57 20 A ILE 11 -175.97 53.81 20 A TYR 12 42.99 -66.09 20 A TYR 13 87.16 168.45 20 A ARG 15 62.66 -80.34 20 A TYR 16 -136.94 -44.91 21 A TYR 3 42.60 -137.53 21 A PHE 4 -177.16 -51.51 21 A ARG 5 -160.20 -96.03 21 A VAL 6 45.64 -75.95 21 A TYR 7 24.85 -59.65 21 A TYR 8 40.47 88.07 21 A ILE 11 174.58 56.42 21 A TYR 12 42.05 -66.76 21 A TYR 13 87.60 -20.09 21 A ARG 14 66.60 138.22 21 A ARG 15 -146.50 -72.44 21 A TYR 16 138.93 -0.96 22 A TRP 2 -100.43 -146.00 22 A PHE 4 -154.10 -55.86 22 A ARG 5 -153.93 -76.52 22 A VAL 6 48.04 -81.01 22 A TYR 7 51.79 -60.67 22 A TYR 8 33.45 85.64 22 A ARG 9 44.09 28.62 22 A ILE 11 162.48 56.69 22 A TYR 12 41.16 -59.05 22 A TYR 13 92.50 -175.54 22 A ARG 15 49.22 169.05 22 A TYR 16 3.09 -61.90 23 A TRP 2 -63.36 -140.73 23 A TYR 3 -145.88 30.69 23 A PHE 4 32.91 -66.70 23 A ARG 5 -140.41 -68.51 23 A VAL 6 51.93 -82.09 23 A TYR 7 23.05 -58.72 23 A TYR 8 34.94 -124.81 23 A ILE 11 169.65 75.03 23 A TYR 12 0.55 92.97 23 A ARG 14 -57.44 -159.33 23 A ARG 15 80.84 99.30 24 A TRP 2 -63.18 -141.46 24 A TYR 3 -141.47 28.39 24 A PHE 4 9.77 -126.89 24 A VAL 6 70.60 -89.53 24 A TYR 7 49.41 -62.18 24 A TYR 8 58.12 -64.38 24 A ARG 9 -155.15 28.97 24 A ILE 11 166.27 54.86 24 A TYR 12 42.07 -64.23 24 A TYR 13 84.24 -70.65 24 A ARG 15 -170.35 33.54 24 A TYR 16 -159.73 -159.34 25 A TRP 2 -150.75 -139.20 25 A PHE 4 63.93 -165.22 25 A ARG 5 -30.84 -81.43 25 A TYR 8 44.75 -82.92 25 A ILE 11 166.26 57.34 25 A TYR 12 34.16 -62.99 25 A TYR 13 90.52 -38.63 25 A ARG 14 169.33 164.16 25 A TYR 16 -115.43 -161.50 26 A TRP 2 -63.06 -145.36 26 A PHE 4 22.58 -138.78 26 A ARG 5 -57.13 -79.61 26 A VAL 6 56.97 -72.95 26 A TYR 7 40.57 -61.90 26 A TYR 8 40.02 -78.90 26 A ILE 11 176.63 70.32 26 A TYR 12 3.35 90.78 27 A TRP 2 -62.09 -147.92 27 A TYR 3 -109.92 -88.48 27 A PHE 4 164.30 -50.21 27 A ARG 5 -172.52 28.71 27 A TYR 7 -169.27 -29.17 27 A TYR 8 61.17 -81.01 27 A ILE 11 163.38 75.54 27 A TYR 12 38.88 -69.78 27 A TYR 13 89.22 179.79 27 A ARG 15 -97.06 -71.68 28 A TRP 2 -82.50 -151.31 28 A TYR 3 -153.61 -95.49 28 A PHE 4 163.99 -106.13 28 A ARG 5 -60.15 -82.06 28 A VAL 6 42.27 -72.55 28 A TYR 7 25.79 -59.65 28 A TYR 8 45.72 -142.52 28 A ILE 11 171.63 66.52 28 A TYR 12 7.08 99.75 28 A ARG 14 -139.42 -155.52 28 A TYR 16 -132.23 -48.35 29 A TRP 2 -92.74 -139.74 29 A TYR 3 172.91 127.66 29 A PHE 4 -26.46 -95.35 29 A ARG 5 -104.76 -66.47 29 A VAL 6 65.83 -89.14 29 A TYR 7 43.21 -62.88 29 A TYR 8 56.70 -62.98 29 A ARG 9 -154.41 30.14 29 A ILE 11 167.02 55.99 29 A TYR 12 38.95 -61.01 29 A TYR 13 87.64 -163.89 29 A ARG 15 -72.44 -89.77 29 A TYR 16 -1.87 -115.28 30 A TRP 2 -61.87 -148.86 30 A TYR 3 -113.77 -82.56 30 A PHE 4 130.94 -146.03 30 A ARG 5 -66.69 89.49 30 A TYR 8 46.63 -76.31 30 A ILE 11 -171.22 48.31 30 A TYR 12 49.29 -67.31 30 A TYR 13 83.88 -144.24 30 A ARG 14 47.02 -79.22 30 A ARG 15 82.88 -64.48 30 A TYR 16 -161.86 -45.79 31 A TRP 2 -62.32 -155.14 31 A TYR 3 -161.25 117.37 31 A PHE 4 -59.08 -126.00 31 A ARG 5 -50.40 -97.51 31 A TYR 8 29.01 53.89 31 A ARG 9 89.14 17.85 31 A ILE 11 -174.84 52.70 31 A TYR 12 43.35 -65.98 31 A TYR 13 86.52 -51.02 31 A ARG 14 179.59 99.11 minimized average Solution Structure of Tachyplesin I Mutant TPY4 in water 1 N N ANTIMICROBIAL PROTEIN Tachyplesin I, Beta Hairpin, Tyrosine Mutant, TPY4, ANTIMICROBIAL PROTEIN TAC1_TACTR UNP 1 24 P14213 KWCFRVCYRGICYRRCR 24 40 1MA4 1 17 P14213 A 1 1 17 1 CYS engineered mutation TYR 3 1MA4 A P14213 UNP 26 3 1 CYS engineered mutation TYR 7 1MA4 A P14213 UNP 30 7 1 CYS engineered mutation TYR 12 1MA4 A P14213 UNP 35 12 1 CYS engineered mutation TYR 16 1MA4 A P14213 UNP 39 16