1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Laederach, A.
Andreotti, A.H.
Fulton, D.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
41
12359
12368
10.1021/bi026185z
12369825
Solution and micelle-bound structures of Tachyplesin I and its active linear derivatives
2002
10.2210/pdb1ma4/pdb
pdb_00001ma4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
2514.931
Tachyplesin 1
C3Y C7Y C12Y C16Y
1
syn
polymer
no
no
KWYFRVYYRGIYYRRYR
KWYFRVYYRGIYYRRYR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-10-16
1
1
2008-04-28
1
2
2011-07-13
1
3
2021-10-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
Tachyplesin I Wild type peptide
TACHYPLESIN I IN THE PRESENCE OF DODECYLPHOSPHOCHOLINE MICELLES
TPY4 TACHYPLESIN I TYROSINE MUTANT IN THE PRESENCE OF DODECYLPHOSPHOCHOLINE MICELLES
RCSB
Y
RCSB
2002-07-31
REL
REL
The peptide was chemically synthesized using Fmoc solid state synthesis. The sequence of the peptide is naturally found in Tachypleus Tridentatus (Japanese Horeshoe Crab).
sample
For reasons of overlap, data was collected at both 298K and 277K. NOEs from spectra at both temperatures were used.
structures with the lowest energy
300
31
2D NOESY
2D TOCSY
0.15%
3.0
ambient
298
K
0.15%
3.0
ambient
277
K
Simulated Annealing with complete cross-validation
1
minimized average structure
TPY4 17 residue peptide
90%/10% H2O/D2O and 99% D2O
with 0.15% TFA, pH 3.0
Brunger, Adams, Clore, DeLano, Gros, Grosse-Kunstleve, Jiang, Kuszewski, Nilges, Pannu, Read, Rice, Simonson, Warren
structure solution
CNS
1.0
Bruker
collection
XwinNMR
6.1
Bruker
processing
XwinNMR
6.1
Brunger, Adams, Clore, DeLano, Gros, Grosse-Kunstleve, Jiang, Kuszewski, Nilges, Pannu, Read, Rice, Simonson, Warren
refinement
CNS
1.0
500
Bruker
DRX
LYS
1
n
1
LYS
1
A
TRP
2
n
2
TRP
2
A
TYR
3
n
3
TYR
3
A
PHE
4
n
4
PHE
4
A
ARG
5
n
5
ARG
5
A
VAL
6
n
6
VAL
6
A
TYR
7
n
7
TYR
7
A
TYR
8
n
8
TYR
8
A
ARG
9
n
9
ARG
9
A
GLY
10
n
10
GLY
10
A
ILE
11
n
11
ILE
11
A
TYR
12
n
12
TYR
12
A
TYR
13
n
13
TYR
13
A
ARG
14
n
14
ARG
14
A
ARG
15
n
15
ARG
15
A
TYR
16
n
16
TYR
16
A
ARG
17
n
17
ARG
17
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
O
H
VAL
TYR
6
8
1.51
1
A
A
O
N
VAL
TYR
6
8
1.97
1
A
A
O
N
ILE
TYR
11
13
2.16
3
A
A
O
N
TYR
ARG
7
9
2.17
4
A
A
O
H
TYR
GLY
7
10
1.55
4
A
A
O
H
ILE
TYR
11
13
1.58
4
A
A
O
N
ILE
TYR
11
13
2.15
7
A
A
O
H
TYR
ARG
7
9
1.51
8
A
A
O
N
VAL
TYR
6
8
2.07
10
A
A
O
N
ILE
TYR
11
13
2.10
12
A
A
O
N
VAL
TYR
6
8
2.16
14
A
A
O
H
TYR
ARG
7
9
1.57
15
A
A
O
H
VAL
TYR
6
8
1.40
15
A
A
O
N
VAL
TYR
6
8
2.11
16
A
A
O
H
VAL
TYR
6
8
1.43
16
A
A
O
N
VAL
TYR
6
8
2.10
18
A
A
O
N
ILE
TYR
11
13
2.11
19
A
A
O
H
VAL
TYR
6
8
1.45
19
A
A
O
N
VAL
TYR
6
8
2.13
21
A
A
O
H
VAL
TYR
6
8
1.58
21
A
A
O
N
VAL
TYR
6
8
1.97
22
A
A
O
H
VAL
TYR
6
8
1.37
22
A
A
O
H
ILE
TYR
11
13
1.48
22
A
A
O
N
ILE
TYR
11
13
2.16
22
A
A
O
N
VAL
TYR
6
8
2.17
23
A
A
O
N
VAL
TYR
6
8
2.07
23
A
A
O
N
TYR
ARG
3
5
2.17
24
A
A
O
H
VAL
TYR
6
8
1.37
24
A
A
O
N
VAL
TYR
6
8
2.12
25
A
A
O
N
ILE
TYR
11
13
2.17
26
A
A
O
H
VAL
TYR
6
8
1.47
26
A
A
O
H
TYR
GLY
7
10
1.59
26
A
A
O
N
VAL
TYR
6
8
2.11
27
A
A
O
H
TYR
GLY
7
10
1.55
28
A
A
O
N
VAL
TYR
6
8
2.08
29
A
A
O
H
VAL
TYR
6
8
1.41
29
A
A
O
N
VAL
TYR
6
8
2.06
30
A
A
O
H
TYR
GLY
7
10
1.57
1
A
TRP
2
-66.72
-148.84
1
A
TYR
3
-128.58
-91.17
1
A
PHE
4
159.84
-40.89
1
A
ARG
5
-158.78
-74.27
1
A
VAL
6
53.40
-76.63
1
A
TYR
7
8.21
-41.92
1
A
TYR
8
51.79
-81.79
1
A
ILE
11
165.66
64.27
1
A
TYR
12
30.44
-58.28
1
A
TYR
13
85.48
172.27
1
A
ARG
14
-60.58
85.76
2
A
TRP
2
-116.42
-70.88
2
A
TYR
3
141.92
-152.69
2
A
PHE
4
148.71
-44.92
2
A
ARG
5
1.46
107.78
2
A
VAL
6
-137.19
-36.59
2
A
TYR
7
-15.42
-42.11
2
A
TYR
8
32.60
68.24
2
A
ILE
11
179.78
65.05
2
A
TYR
12
12.49
95.34
2
A
TYR
13
-92.85
-143.79
3
A
TRP
2
-67.84
-146.71
3
A
TYR
3
-131.74
-132.50
3
A
PHE
4
164.05
-140.71
3
A
ARG
5
-69.53
46.31
3
A
TYR
8
41.05
-67.49
3
A
ILE
11
168.60
59.68
3
A
TYR
12
37.22
-63.90
3
A
TYR
13
87.98
-70.15
3
A
ARG
14
52.87
100.80
3
A
TYR
16
23.88
-141.50
4
A
TRP
2
-63.22
-135.12
4
A
TYR
3
-145.66
11.32
4
A
PHE
4
16.59
-89.10
4
A
ARG
5
-111.33
-70.99
4
A
VAL
6
55.65
-82.60
4
A
TYR
7
77.97
-34.97
4
A
TYR
8
61.28
-76.38
4
A
ILE
11
167.66
72.13
4
A
TYR
12
29.02
-55.41
4
A
TYR
13
80.33
-90.76
4
A
ARG
14
153.33
37.31
4
A
ARG
15
43.46
178.77
4
A
TYR
16
-161.37
-48.10
5
A
TYR
3
48.83
-124.69
5
A
PHE
4
178.71
-133.20
5
A
ARG
5
-67.07
68.26
5
A
TYR
8
48.63
-79.46
5
A
ILE
11
164.67
61.56
5
A
TYR
12
37.74
-67.35
5
A
TYR
13
88.74
35.89
5
A
ARG
14
-45.12
96.70
5
A
ARG
15
-61.46
-81.77
5
A
TYR
16
-179.56
-28.11
6
A
TRP
2
-73.59
-147.43
6
A
TYR
3
-161.83
113.93
6
A
PHE
4
-61.29
-129.35
6
A
ARG
5
-49.60
-93.70
6
A
TYR
8
44.08
-68.95
6
A
ARG
9
-140.04
34.14
6
A
ILE
11
164.73
59.83
6
A
TYR
12
39.78
-67.90
6
A
TYR
13
91.87
27.43
6
A
ARG
14
48.58
-173.31
6
A
TYR
16
-62.37
-155.56
7
A
TRP
2
-62.85
-148.96
7
A
TYR
3
-143.62
18.64
7
A
PHE
4
23.64
-76.30
7
A
ARG
5
-138.57
-54.43
7
A
VAL
6
41.05
105.54
7
A
TYR
7
-174.37
-35.17
7
A
TYR
8
53.07
-67.43
7
A
ARG
9
-145.65
43.50
7
A
ILE
11
-161.77
48.88
7
A
TYR
12
-16.91
137.04
8
A
TRP
2
-66.14
-145.18
8
A
TYR
3
-132.51
-61.21
8
A
PHE
4
170.55
-147.23
8
A
ARG
5
-60.28
-130.53
8
A
VAL
6
96.61
-44.93
8
A
TYR
7
7.57
-53.85
8
A
TYR
8
41.67
90.87
8
A
ARG
9
35.79
34.33
8
A
ILE
11
170.52
62.18
8
A
TYR
12
38.99
-64.90
8
A
TYR
13
89.56
34.21
8
A
ARG
14
175.17
178.27
8
A
ARG
15
-176.20
57.18
9
A
TRP
2
-85.59
-158.92
9
A
TYR
3
-150.56
-92.51
9
A
PHE
4
-176.29
-64.42
9
A
TYR
8
22.84
54.55
9
A
ARG
9
97.76
18.09
9
A
ILE
11
167.05
54.30
9
A
TYR
12
39.42
-63.50
9
A
TYR
13
85.73
62.19
9
A
ARG
14
82.79
-0.92
9
A
ARG
15
25.33
110.30
9
A
TYR
16
-58.72
-156.33
10
A
TRP
2
-64.46
-148.33
10
A
TYR
3
-126.21
-91.90
10
A
PHE
4
153.09
-136.80
10
A
TYR
8
44.63
-80.08
10
A
ILE
11
-174.84
76.84
10
A
TYR
12
26.40
-60.27
10
A
TYR
13
88.53
-150.31
10
A
ARG
14
-39.84
-86.12
10
A
ARG
15
47.14
73.88
11
A
TRP
2
-67.50
-160.55
11
A
TYR
3
-115.37
-109.20
11
A
PHE
4
-165.91
-149.35
11
A
TYR
7
-96.83
-76.31
11
A
TYR
8
57.14
-87.23
11
A
ILE
11
155.53
61.97
11
A
TYR
12
43.29
-72.37
11
A
TYR
13
91.17
-169.66
11
A
ARG
15
-46.10
151.50
11
A
TYR
16
-67.98
-159.96
12
A
TRP
2
-61.92
-149.08
12
A
TYR
3
-141.17
12.97
12
A
PHE
4
21.03
-145.21
12
A
ARG
5
-56.80
-152.21
12
A
VAL
6
108.56
-43.74
12
A
TYR
7
1.04
-48.02
12
A
TYR
8
42.54
84.02
12
A
ARG
9
47.50
28.15
12
A
ILE
11
128.58
89.18
12
A
TYR
12
-20.34
134.91
12
A
ARG
14
-137.47
-46.07
12
A
TYR
16
-113.19
-156.59
13
A
TRP
2
-60.26
-156.45
13
A
TYR
3
-121.58
-121.32
13
A
PHE
4
171.25
-135.34
13
A
ARG
5
-45.77
-79.19
13
A
VAL
6
38.53
93.20
13
A
TYR
7
-159.37
-35.78
13
A
TYR
8
46.62
-85.57
13
A
ILE
11
176.71
68.91
13
A
TYR
12
9.28
98.79
14
A
TYR
3
35.19
-119.90
14
A
PHE
4
-171.36
-59.74
14
A
ARG
5
-152.44
23.69
14
A
TYR
7
-20.54
-36.91
14
A
TYR
8
47.07
-63.80
14
A
ARG
9
-145.46
29.89
14
A
ILE
11
162.62
71.49
14
A
TYR
12
23.21
-61.40
14
A
TYR
13
80.11
-175.25
14
A
ARG
14
58.19
158.89
14
A
ARG
15
-159.10
40.79
14
A
TYR
16
-90.04
-159.24
15
A
TRP
2
-67.04
-147.32
15
A
TYR
3
-139.52
-87.53
15
A
PHE
4
167.35
-48.49
15
A
ARG
5
-160.55
-65.07
15
A
VAL
6
50.76
-83.56
15
A
TYR
7
46.53
-61.92
15
A
TYR
8
33.23
85.42
15
A
ARG
9
47.22
25.70
15
A
ILE
11
169.77
56.45
15
A
TYR
12
46.12
-72.54
15
A
TYR
13
92.52
132.58
15
A
ARG
14
38.29
-87.41
15
A
ARG
15
-62.24
-127.97
15
A
TYR
16
-163.10
-162.18
16
A
TRP
2
-72.00
-150.31
16
A
TYR
3
-116.78
-80.60
16
A
PHE
4
158.67
-46.37
16
A
ARG
5
-152.79
-70.19
16
A
VAL
6
52.87
-84.82
16
A
TYR
7
44.80
-62.77
16
A
TYR
8
39.84
87.36
16
A
ARG
9
42.94
27.26
16
A
ILE
11
172.39
57.05
16
A
TYR
12
45.08
-72.54
16
A
TYR
13
83.21
158.04
17
A
TRP
2
-60.39
-150.90
17
A
TYR
3
-119.64
-79.84
17
A
PHE
4
160.78
-138.16
17
A
TYR
8
29.10
-123.86
17
A
ILE
11
168.63
-22.85
17
A
TYR
12
126.33
-43.43
17
A
TYR
13
79.23
-58.27
17
A
ARG
14
-156.09
-57.55
18
A
TRP
2
-71.07
-162.92
18
A
TYR
3
-111.87
-144.87
18
A
PHE
4
167.87
-143.28
18
A
ARG
5
-77.68
-152.02
18
A
TYR
8
30.24
97.62
18
A
ARG
9
47.68
22.18
18
A
ILE
11
173.08
69.73
18
A
TYR
12
29.36
-59.81
18
A
TYR
13
91.75
-168.24
18
A
ARG
14
-40.67
72.36
18
A
ARG
15
165.23
137.34
18
A
TYR
16
177.94
-167.26
19
A
TRP
2
-68.51
-151.92
19
A
TYR
3
-119.58
-125.00
19
A
PHE
4
-176.75
-46.77
19
A
ARG
5
-165.96
-98.83
19
A
VAL
6
59.44
-79.33
19
A
TYR
7
45.81
-63.66
19
A
TYR
8
41.70
88.90
19
A
ARG
9
37.54
32.68
19
A
ILE
11
176.41
48.97
19
A
TYR
12
45.66
-68.76
19
A
TYR
13
91.78
71.45
19
A
ARG
14
-93.16
-140.96
20
A
TYR
3
40.25
-102.47
20
A
PHE
4
175.99
-119.23
20
A
ARG
5
-57.42
-71.52
20
A
VAL
6
49.43
21.03
20
A
TYR
8
25.51
52.65
20
A
ARG
9
92.05
23.57
20
A
ILE
11
-175.97
53.81
20
A
TYR
12
42.99
-66.09
20
A
TYR
13
87.16
168.45
20
A
ARG
15
62.66
-80.34
20
A
TYR
16
-136.94
-44.91
21
A
TYR
3
42.60
-137.53
21
A
PHE
4
-177.16
-51.51
21
A
ARG
5
-160.20
-96.03
21
A
VAL
6
45.64
-75.95
21
A
TYR
7
24.85
-59.65
21
A
TYR
8
40.47
88.07
21
A
ILE
11
174.58
56.42
21
A
TYR
12
42.05
-66.76
21
A
TYR
13
87.60
-20.09
21
A
ARG
14
66.60
138.22
21
A
ARG
15
-146.50
-72.44
21
A
TYR
16
138.93
-0.96
22
A
TRP
2
-100.43
-146.00
22
A
PHE
4
-154.10
-55.86
22
A
ARG
5
-153.93
-76.52
22
A
VAL
6
48.04
-81.01
22
A
TYR
7
51.79
-60.67
22
A
TYR
8
33.45
85.64
22
A
ARG
9
44.09
28.62
22
A
ILE
11
162.48
56.69
22
A
TYR
12
41.16
-59.05
22
A
TYR
13
92.50
-175.54
22
A
ARG
15
49.22
169.05
22
A
TYR
16
3.09
-61.90
23
A
TRP
2
-63.36
-140.73
23
A
TYR
3
-145.88
30.69
23
A
PHE
4
32.91
-66.70
23
A
ARG
5
-140.41
-68.51
23
A
VAL
6
51.93
-82.09
23
A
TYR
7
23.05
-58.72
23
A
TYR
8
34.94
-124.81
23
A
ILE
11
169.65
75.03
23
A
TYR
12
0.55
92.97
23
A
ARG
14
-57.44
-159.33
23
A
ARG
15
80.84
99.30
24
A
TRP
2
-63.18
-141.46
24
A
TYR
3
-141.47
28.39
24
A
PHE
4
9.77
-126.89
24
A
VAL
6
70.60
-89.53
24
A
TYR
7
49.41
-62.18
24
A
TYR
8
58.12
-64.38
24
A
ARG
9
-155.15
28.97
24
A
ILE
11
166.27
54.86
24
A
TYR
12
42.07
-64.23
24
A
TYR
13
84.24
-70.65
24
A
ARG
15
-170.35
33.54
24
A
TYR
16
-159.73
-159.34
25
A
TRP
2
-150.75
-139.20
25
A
PHE
4
63.93
-165.22
25
A
ARG
5
-30.84
-81.43
25
A
TYR
8
44.75
-82.92
25
A
ILE
11
166.26
57.34
25
A
TYR
12
34.16
-62.99
25
A
TYR
13
90.52
-38.63
25
A
ARG
14
169.33
164.16
25
A
TYR
16
-115.43
-161.50
26
A
TRP
2
-63.06
-145.36
26
A
PHE
4
22.58
-138.78
26
A
ARG
5
-57.13
-79.61
26
A
VAL
6
56.97
-72.95
26
A
TYR
7
40.57
-61.90
26
A
TYR
8
40.02
-78.90
26
A
ILE
11
176.63
70.32
26
A
TYR
12
3.35
90.78
27
A
TRP
2
-62.09
-147.92
27
A
TYR
3
-109.92
-88.48
27
A
PHE
4
164.30
-50.21
27
A
ARG
5
-172.52
28.71
27
A
TYR
7
-169.27
-29.17
27
A
TYR
8
61.17
-81.01
27
A
ILE
11
163.38
75.54
27
A
TYR
12
38.88
-69.78
27
A
TYR
13
89.22
179.79
27
A
ARG
15
-97.06
-71.68
28
A
TRP
2
-82.50
-151.31
28
A
TYR
3
-153.61
-95.49
28
A
PHE
4
163.99
-106.13
28
A
ARG
5
-60.15
-82.06
28
A
VAL
6
42.27
-72.55
28
A
TYR
7
25.79
-59.65
28
A
TYR
8
45.72
-142.52
28
A
ILE
11
171.63
66.52
28
A
TYR
12
7.08
99.75
28
A
ARG
14
-139.42
-155.52
28
A
TYR
16
-132.23
-48.35
29
A
TRP
2
-92.74
-139.74
29
A
TYR
3
172.91
127.66
29
A
PHE
4
-26.46
-95.35
29
A
ARG
5
-104.76
-66.47
29
A
VAL
6
65.83
-89.14
29
A
TYR
7
43.21
-62.88
29
A
TYR
8
56.70
-62.98
29
A
ARG
9
-154.41
30.14
29
A
ILE
11
167.02
55.99
29
A
TYR
12
38.95
-61.01
29
A
TYR
13
87.64
-163.89
29
A
ARG
15
-72.44
-89.77
29
A
TYR
16
-1.87
-115.28
30
A
TRP
2
-61.87
-148.86
30
A
TYR
3
-113.77
-82.56
30
A
PHE
4
130.94
-146.03
30
A
ARG
5
-66.69
89.49
30
A
TYR
8
46.63
-76.31
30
A
ILE
11
-171.22
48.31
30
A
TYR
12
49.29
-67.31
30
A
TYR
13
83.88
-144.24
30
A
ARG
14
47.02
-79.22
30
A
ARG
15
82.88
-64.48
30
A
TYR
16
-161.86
-45.79
31
A
TRP
2
-62.32
-155.14
31
A
TYR
3
-161.25
117.37
31
A
PHE
4
-59.08
-126.00
31
A
ARG
5
-50.40
-97.51
31
A
TYR
8
29.01
53.89
31
A
ARG
9
89.14
17.85
31
A
ILE
11
-174.84
52.70
31
A
TYR
12
43.35
-65.98
31
A
TYR
13
86.52
-51.02
31
A
ARG
14
179.59
99.11
minimized average
Solution Structure of Tachyplesin I Mutant TPY4 in water
1
N
N
ANTIMICROBIAL PROTEIN
Tachyplesin I, Beta Hairpin, Tyrosine Mutant, TPY4, ANTIMICROBIAL PROTEIN
TAC1_TACTR
UNP
1
24
P14213
KWCFRVCYRGICYRRCR
24
40
1MA4
1
17
P14213
A
1
1
17
1
CYS
engineered mutation
TYR
3
1MA4
A
P14213
UNP
26
3
1
CYS
engineered mutation
TYR
7
1MA4
A
P14213
UNP
30
7
1
CYS
engineered mutation
TYR
12
1MA4
A
P14213
UNP
35
12
1
CYS
engineered mutation
TYR
16
1MA4
A
P14213
UNP
39
16