0.027685
0.000000
0.000000
0.000000
0.024534
0.000000
0.000000
0.000000
0.015147
0.00000
0.00000
0.00000
Guillet, V.
Ohta, N.
Cabantous, S.
Newton, A.
Samama, J.-P.
Structural Proteomics in Europe (SPINE)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
36.120
40.760
66.020
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mn 2
54.938
MANGANESE (II) ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
MN
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
N
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
277
42003
42010
10.1074/jbc.M204789200
12176983
Crystallographic and Biochemical Studies of DivK Reveal Novel Features of
an Essential Response Regulator in Caulobacter crescentus.
2002
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
58
1249
1251
10.1107/S0907444902008338
Characterization and Crystallization of Divk, an Essential Response Regulator for Cell Division and
Differentiation in Caulobacter Crescentus
2002
UK
Embo J.
EMJODG
0897
0261-4189
14
3915
3924
An Essential Single Domain Response Regulator Required for Normal Cell Division and
Differentiation in Caulobacter Crescentus
1995
10.2210/pdb1mb0/pdb
pdb_00001mb0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
IMAGE PLATE
2000-04-16
MAR scanner 345 mm plate
Si111 or Si311
SINGLE WAVELENGTH
M
x-ray
1
0.980
1.0
BM30A
ESRF
0.980
0.980
SYNCHROTRON
ESRF BEAMLINE BM30A
14059.180
cell division response regulator DivK
1
man
polymer
54.938
MANGANESE (II) ION
2
syn
non-polymer
18.015
water
37
nat
water
Polar differentiation response regulator, DIVK RESPONSE REGULATOR
no
no
TKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVA
VTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQPA
TKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVA
VTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQPA
A
IGBMC-1121-000
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Caulobacter
Escherichia
sample
divk
155892
Caulobacter vibrioides
562
Escherichia coli
BL21-DE3-PLYSS
PLASMID
PT7-7, T7 PROMOTOR
PZHF55
1
1.80
31.0
VAPOR DIFFUSION, HANGING OR SITTING-DROP
8.00
MES 50mM PH6.0, PEG MME
550 32% AT 285K, The Protein was Concentrated At 2 MG/ML
In MES-NAOH PH 6.00 (20 mM), DTT (5 mM) And Mixed With An
Equal Volume Of The Reservoir Solution Containing PEG MME
550 (32%), MES PH 6.00 (40 mM), DTT (5 mM). Crystal Size
(300X40X40 microM3) In 20microL Sitting Drops. Crystals
Transferred In Reservoir Solutions Whose Ph Was Increased
From 6.0 To 8.0 By Steps Of 0.5 Ph Units (The Soaking Time
In Each Solution Was 12 Hours). Manganese Derivative Was
Obtained By Soaking For 24 Hours Protein Crystals In The
Reservoir Solution Supplemented With 10 Mm MnCl2 (PH 8.00).
Crystals Were Frozen In Liquid Propane After Soaking For A
Few Seconds In Peg MME 550 (50%), Tris PH 8.0 (40 Mm)., VAPOR DIFFUSION, HANGING OR SITTING-DROP
285
Structural Proteomics in Europe
SPINE
citation_author
pdbx_unobs_or_zero_occ_atoms
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
pdbx_unobs_or_zero_occ_atoms
struct_conn
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Structure summary
Advisory
Database references
Advisory
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-12-04
1
1
2008-04-28
1
2
2011-07-13
1
3
2017-02-01
1
4
2018-01-24
1
5
2024-02-14
1
6
2024-04-03
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CRYSTAL STRUCTURE OF THE RESPONSE REGULATOR DIVK
CRYSTAL STRUCTURE OF THE RESPONSE REGULATOR DIVK AT PH 6.0 IN COMPLEX WITH MN2+
CRYSTAL STRUCTURE OF THE RESPONSE REGULATOR DIVK AT PH 8.5 IN COMPLEX WITH MG2+
Y
RCSB
Y
RCSB
2002-08-02
REL
REL
MN
MANGANESE (II) ION
HOH
water
APO-DIVK SOLVED AT PH6
Other
experimental model
MN
201
2
MN
MN
201
A
MN
202
2
MN
MN
202
A
HOH
1
3
HOH
HOH
203
A
HOH
2
3
HOH
HOH
204
A
HOH
3
3
HOH
HOH
205
A
HOH
4
3
HOH
HOH
206
A
HOH
5
3
HOH
HOH
207
A
HOH
6
3
HOH
HOH
208
A
HOH
7
3
HOH
HOH
209
A
HOH
8
3
HOH
HOH
210
A
HOH
9
3
HOH
HOH
211
A
HOH
10
3
HOH
HOH
212
A
HOH
11
3
HOH
HOH
213
A
HOH
12
3
HOH
HOH
214
A
HOH
13
3
HOH
HOH
215
A
HOH
14
3
HOH
HOH
216
A
HOH
15
3
HOH
HOH
217
A
HOH
16
3
HOH
HOH
218
A
HOH
17
3
HOH
HOH
219
A
HOH
18
3
HOH
HOH
220
A
HOH
19
3
HOH
HOH
221
A
HOH
20
3
HOH
HOH
222
A
HOH
21
3
HOH
HOH
223
A
HOH
22
3
HOH
HOH
224
A
HOH
23
3
HOH
HOH
225
A
HOH
24
3
HOH
HOH
226
A
HOH
25
3
HOH
HOH
227
A
HOH
26
3
HOH
HOH
228
A
HOH
27
3
HOH
HOH
229
A
HOH
28
3
HOH
HOH
230
A
HOH
29
3
HOH
HOH
231
A
HOH
30
3
HOH
HOH
232
A
HOH
31
3
HOH
HOH
233
A
HOH
32
3
HOH
HOH
234
A
HOH
33
3
HOH
HOH
235
A
HOH
34
3
HOH
HOH
236
A
HOH
35
3
HOH
HOH
237
A
HOH
36
3
HOH
HOH
238
A
HOH
37
3
HOH
HOH
239
A
THR
2
n
1
THR
2
A
LYS
3
n
2
LYS
3
A
LYS
4
n
3
LYS
4
A
VAL
5
n
4
VAL
5
A
LEU
6
n
5
LEU
6
A
ILE
7
n
6
ILE
7
A
VAL
8
n
7
VAL
8
A
GLU
9
n
8
GLU
9
A
ASP
10
n
9
ASP
10
A
ASN
11
n
10
ASN
11
A
GLU
12
n
11
GLU
12
A
LEU
13
n
12
LEU
13
A
ASN
14
n
13
ASN
14
A
MET
15
n
14
MET
15
A
LYS
16
n
15
LYS
16
A
LEU
17
n
16
LEU
17
A
PHE
18
n
17
PHE
18
A
HIS
19
n
18
HIS
19
A
ASP
20
n
19
ASP
20
A
LEU
21
n
20
LEU
21
A
LEU
22
n
21
LEU
22
A
GLU
23
n
22
GLU
23
A
ALA
24
n
23
ALA
24
A
GLN
25
n
24
GLN
25
A
GLY
26
n
25
GLY
26
A
TYR
27
n
26
TYR
27
A
GLU
28
n
27
GLU
28
A
THR
29
n
28
THR
29
A
LEU
30
n
29
LEU
30
A
GLN
31
n
30
GLN
31
A
THR
32
n
31
THR
32
A
ARG
33
n
32
ARG
33
A
GLU
34
n
33
GLU
34
A
GLY
35
n
34
GLY
35
A
LEU
36
n
35
LEU
36
A
SER
37
n
36
SER
37
A
ALA
38
n
37
ALA
38
A
LEU
39
n
38
LEU
39
A
SER
40
n
39
SER
40
A
ILE
41
n
40
ILE
41
A
ALA
42
n
41
ALA
42
A
ARG
43
n
42
ARG
43
A
GLU
44
n
43
GLU
44
A
ASN
45
n
44
ASN
45
A
LYS
46
n
45
LYS
46
A
PRO
47
n
46
PRO
47
A
ASP
48
n
47
ASP
48
A
LEU
49
n
48
LEU
49
A
ILE
50
n
49
ILE
50
A
LEU
51
n
50
LEU
51
A
MET
52
n
51
MET
52
A
ASP
53
n
52
ASP
53
A
ILE
54
n
53
ILE
54
A
GLN
55
n
54
GLN
55
A
LEU
56
n
55
LEU
56
A
PRO
57
n
56
PRO
57
A
GLU
58
n
57
GLU
58
A
ILE
59
n
58
ILE
59
A
SER
60
n
59
SER
60
A
GLY
61
n
60
GLY
61
A
LEU
62
n
61
LEU
62
A
GLU
63
n
62
GLU
63
A
VAL
64
n
63
VAL
64
A
THR
65
n
64
THR
65
A
LYS
66
n
65
LYS
66
A
TRP
67
n
66
TRP
67
A
LEU
68
n
67
LEU
68
A
LYS
69
n
68
LYS
69
A
GLU
70
n
69
GLU
70
A
ASP
71
n
70
ASP
71
A
ASP
72
n
71
ASP
72
A
ASP
73
n
72
ASP
73
A
LEU
74
n
73
LEU
74
A
ALA
75
n
74
ALA
75
A
HIS
76
n
75
HIS
76
A
ILE
77
n
76
ILE
77
A
PRO
78
n
77
PRO
78
A
VAL
79
n
78
VAL
79
A
VAL
80
n
79
VAL
80
A
ALA
81
n
80
ALA
81
A
VAL
82
n
81
VAL
82
A
THR
83
n
82
THR
83
A
n
83
84
A
n
84
85
A
n
85
86
A
n
86
87
A
n
87
88
A
n
88
89
A
n
89
90
A
n
90
91
A
n
91
92
A
n
92
93
A
n
93
94
A
n
94
95
A
n
95
96
A
GLY
97
n
96
GLY
97
A
GLY
98
n
97
GLY
98
A
CYS
99
n
98
CYS
99
A
GLU
100
n
99
GLU
100
A
ALA
101
n
100
ALA
101
A
TYR
102
n
101
TYR
102
A
ILE
103
n
102
ILE
103
A
SER
104
n
103
SER
104
A
LYS
105
n
104
LYS
105
A
PRO
106
n
105
PRO
106
A
ILE
107
n
106
ILE
107
A
SER
108
n
107
SER
108
A
VAL
109
n
108
VAL
109
A
VAL
110
n
109
VAL
110
A
HIS
111
n
110
HIS
111
A
PHE
112
n
111
PHE
112
A
LEU
113
n
112
LEU
113
A
GLU
114
n
113
GLU
114
A
THR
115
n
114
THR
115
A
ILE
116
n
115
ILE
116
A
LYS
117
n
116
LYS
117
A
ARG
118
n
117
ARG
118
A
LEU
119
n
118
LEU
119
A
LEU
120
n
119
LEU
120
A
GLU
121
n
120
GLU
121
A
n
121
122
A
n
122
123
A
n
123
124
A
n
124
125
A
author_defined_assembly
1
monomeric
A
GLU
9
A
OE2
GLU
8
1_555
A
MN
201
B
MN
MN
1_555
A
ASP
10
A
OD1
ASP
9
1_555
88.5
A
GLU
9
A
OE2
GLU
8
1_555
A
MN
201
B
MN
MN
1_555
A
ASP
53
A
OD2
ASP
52
1_555
99.7
A
ASP
10
A
OD1
ASP
9
1_555
A
MN
201
B
MN
MN
1_555
A
ASP
53
A
OD2
ASP
52
1_555
75.0
A
GLU
9
A
OE2
GLU
8
1_555
A
MN
201
B
MN
MN
1_555
A
HOH
203
D
O
HOH
1_555
146.3
A
ASP
10
A
OD1
ASP
9
1_555
A
MN
201
B
MN
MN
1_555
A
HOH
203
D
O
HOH
1_555
60.7
A
ASP
53
A
OD2
ASP
52
1_555
A
MN
201
B
MN
MN
1_555
A
HOH
203
D
O
HOH
1_555
86.0
A
GLU
9
A
OE2
GLU
8
1_555
A
MN
201
B
MN
MN
1_555
A
HOH
221
D
O
HOH
1_555
91.7
A
ASP
10
A
OD1
ASP
9
1_555
A
MN
201
B
MN
MN
1_555
A
HOH
221
D
O
HOH
1_555
159.2
A
ASP
53
A
OD2
ASP
52
1_555
A
MN
201
B
MN
MN
1_555
A
HOH
221
D
O
HOH
1_555
84.5
A
HOH
203
D
O
HOH
1_555
A
MN
201
B
MN
MN
1_555
A
HOH
221
D
O
HOH
1_555
122.0
A
HIS
19
A
NE2
HIS
18
1_555
A
MN
202
C
MN
MN
1_555
A
GLU
34
A
OE1
GLU
33
4_456
75.0
A
HIS
19
A
NE2
HIS
18
1_555
A
MN
202
C
MN
MN
1_555
A
HOH
205
D
O
HOH
1_555
74.4
A
GLU
34
A
OE1
GLU
33
4_456
A
MN
202
C
MN
MN
1_555
A
HOH
205
D
O
HOH
1_555
135.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
30
A
O
LEU
29
A
N
ILE
7
A
N
ILE
6
A
N
VAL
8
A
N
VAL
7
A
O
LEU
51
A
O
LEU
50
A
N
MET
52
A
N
MET
51
A
O
VAL
82
A
O
VAL
81
A
N
ALA
81
A
N
ALA
80
A
O
ALA
101
A
O
ALA
100
1
A
CG
LYS
46
A
CG
LYS
45
1
Y
1
A
CD
LYS
46
A
CD
LYS
45
1
Y
1
A
CE
LYS
46
A
CE
LYS
45
1
Y
1
A
NZ
LYS
46
A
NZ
LYS
45
1
Y
1
A
CD1
ILE
54
A
CD1
ILE
53
0
Y
1
A
OE1
GLN
55
A
OE1
GLN
54
0
Y
1
A
NE2
GLN
55
A
NE2
GLN
54
0
Y
1
A
CG
LYS
66
A
CG
LYS
65
1
Y
1
A
CD
LYS
66
A
CD
LYS
65
1
Y
1
A
CE
LYS
66
A
CE
LYS
65
1
Y
1
A
NZ
LYS
66
A
NZ
LYS
65
1
Y
1
A
CG
TYR
102
A
CG
TYR
101
1
Y
1
A
CD1
TYR
102
A
CD1
TYR
101
1
Y
1
A
CD2
TYR
102
A
CD2
TYR
101
1
Y
1
A
CE1
TYR
102
A
CE1
TYR
101
1
Y
1
A
CE2
TYR
102
A
CE2
TYR
101
1
Y
1
A
CZ
TYR
102
A
CZ
TYR
101
1
Y
1
A
OH
TYR
102
A
OH
TYR
101
1
Y
1
A
CG
LYS
105
A
CG
LYS
104
1
Y
1
A
CD
LYS
105
A
CD
LYS
104
1
Y
1
A
CE
LYS
105
A
CE
LYS
104
1
Y
1
A
NZ
LYS
105
A
NZ
LYS
104
1
Y
1
A
ALA
84
A
ALA
83
1
Y
1
A
PHE
85
A
PHE
84
1
Y
1
A
ALA
86
A
ALA
85
1
Y
1
A
MET
87
A
MET
86
1
Y
1
A
LYS
88
A
LYS
87
1
Y
1
A
GLY
89
A
GLY
88
1
Y
1
A
ASP
90
A
ASP
89
1
Y
1
A
GLU
91
A
GLU
90
1
Y
1
A
GLU
92
A
GLU
91
1
Y
1
A
ARG
93
A
ARG
92
1
Y
1
A
ILE
94
A
ILE
93
1
Y
1
A
ARG
95
A
ARG
94
1
Y
1
A
GLU
96
A
GLU
95
1
Y
1
A
ARG
122
A
ARG
121
1
Y
1
A
GLN
123
A
GLN
122
1
Y
1
A
PRO
124
A
PRO
123
1
Y
1
A
ALA
125
A
ALA
124
1
Y
1
A
LYS
46
44.44
75.03
1
A
GLN
55
-89.59
47.15
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER.PARAM
ION.TOP
ION.PARAM
32.8
2.74
0.00
0.00
1.00
0.00
-3.74
0.246
0.010
0.208
2.00
14.95
649
6829
6829
11.1
84.3
RANDOM
1
RESTRAINED
THROUGHOUT
0.00
FOURIER SYNTHESIS
APO-DIVK SOLVED AT PH6
FLAT MODEL
80.0755
0.353232
0.28
0.26
2.00
14.95
37
866
2
0
827
0.005
1.2
23.1
0.64
1.10
1.50
1.81
2.00
1.33
2.00
2.03
2.50
0.287
0.028
0.238
2.12
103
697
6
12.9
70.1
18.2
2.00
27.000
1MB0
6829
0.000
0.051
1
8.4000
3.000
98.2
0.261
2.00
2.11
2.700
2970
1
3.10
98.2
data reduction
MOSFLM
data scaling
SCALA
refinement
CNS
data scaling
CCP4
(SCALA)
phasing
CNS
CRYSTAL STRUCTURE OF THE RESPONSE REGULATOR DIVK AT PH 8.0 IN COMPLEX WITH MN2+
1
N
N
2
N
N
2
N
N
3
N
N
A
ASN
11
A
ASN
10
HELX_P
A
GLN
25
A
GLN
24
1
1
15
A
GLU
34
A
GLU
33
HELX_P
A
LYS
46
A
LYS
45
1
2
13
A
SER
60
A
SER
59
HELX_P
A
ASP
71
A
ASP
70
1
3
12
A
SER
108
A
SER
107
HELX_P
A
GLU
121
A
GLU
120
1
4
14
metalc
2.438
A
GLU
9
A
OE2
GLU
8
1_555
A
MN
201
B
MN
MN
1_555
metalc
2.442
A
ASP
10
A
OD1
ASP
9
1_555
A
MN
201
B
MN
MN
1_555
metalc
2.569
A
HIS
19
A
NE2
HIS
18
1_555
A
MN
202
C
MN
MN
1_555
metalc
2.427
A
GLU
34
A
OE1
GLU
33
4_456
A
MN
202
C
MN
MN
1_555
metalc
2.494
A
ASP
53
A
OD2
ASP
52
1_555
A
MN
201
B
MN
MN
1_555
metalc
2.760
A
MN
201
B
MN
MN
1_555
A
HOH
203
D
O
HOH
1_555
metalc
2.469
A
MN
201
B
MN
MN
1_555
A
HOH
221
D
O
HOH
1_555
metalc
2.770
A
MN
202
C
MN
MN
1_555
A
HOH
205
D
O
HOH
1_555
SIGNALING PROTEIN, CELL CYCLE
RESPONSE REGULATOR, SIGNAL TRANSDUCTION PROTEIN, Structural Proteomics in Europe, SPINE, Structural Genomics, SIGNALING PROTEIN, CELL CYCLE
A
LYS
105
A
LYS
104
1
A
PRO
106
A
PRO
105
0.36
Q9A5I4_CAUCR
UNP
1
2
Q9A5I4
TKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVA
VTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQPA
2
125
1MB0
2
125
Q9A5I4
A
1
1
124
5
parallel
parallel
parallel
parallel
A
GLU
28
A
GLU
27
A
THR
32
A
THR
31
A
LYS
4
A
LYS
3
A
VAL
8
A
VAL
7
A
LEU
49
A
LEU
48
A
ASP
53
A
ASP
52
A
VAL
79
A
VAL
78
A
THR
83
A
THR
82
A
ALA
101
A
ALA
100
A
SER
104
A
SER
103
BINDING SITE FOR RESIDUE MN A 201
A
MN
201
Software
5
BINDING SITE FOR RESIDUE MN A 202
A
MN
202
Software
4
A
GLU
9
A
GLU
8
5
1_555
A
ASP
10
A
ASP
9
5
1_555
A
ASP
53
A
ASP
52
5
1_555
A
HOH
203
D
HOH
5
1_555
A
HOH
221
D
HOH
5
1_555
A
HIS
19
A
HIS
18
4
1_555
A
GLU
23
A
GLU
22
4
1_555
A
GLU
34
A
GLU
33
4
4_456
A
HOH
205
D
HOH
4
1_555
19
P 21 21 21