1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Ogata, K.
Morikawa, S.
Nakamura, H.
Hojo, H.
Yoshimura, S.
Zhang, R.
Aimoto, S.
Ametani, Y.
Hirata, Z.
Sarai, A.
Ishii, S.
Nishimura, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
2
309
320
10.1038/nsb0495-309
7796266
Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
1995
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
79
639
Solution Structure of a Specific DNA Complex of the Myb DNA-Binding Domain with Cooperative Recognition Helices
1994
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
89
6428
Solution Structure of a DNA-Binding Unit of Myb: A Helix-Turn-Helix-Related Motif with Conserved Tryptophans Forming a Hydrophobic Core
1992
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
GENE C-MYB, NMR, MINIMIZED AVERAGE STRUCTURE; ENGINEERED
6317.113
MYB PROTO-ONCOGENE PROTEIN
1
nat
polymer
no
yes
LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE(NH2)
LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPEX
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
sample
10090
Mus musculus
repository
Initial release
Version format compliance
Version format compliance
Database references
1
0
1995-07-31
1
1
2008-03-24
1
2
2011-07-13
1
3
2012-02-29
Y
1995-05-19
REL
1
6.8
290
K
6.8
300
K
A TOTAL OF 50 STRUCTURES WERE CALCULATED. THE COORDINATES
OF THE RESTRAINED MINIMIZED AVERAGED STRUCTURE WERE
OBTAINED BY AVERAGING THE COORDINATES OF THE INDIVIDUAL
STRUCTURES AND THEN BY SUBJECTING THE RESULTING
COORDINATES TO THE RESTRAINED ENERGY MINIMIZATION BY
PRESTO.
NAKAI,KIDERA,NAKAMURA
refinement
EMBOSS
MORIKAMI,NAKAI,KIDERA,SAITO,NAKAMURA
refinement
PRESTO
LEU
38
n
1
LEU
38
A
GLY
39
n
2
GLY
39
A
LYS
40
n
3
LYS
40
A
THR
41
n
4
THR
41
A
ARG
42
n
5
ARG
42
A
TRP
43
n
6
TRP
43
A
THR
44
n
7
THR
44
A
ARG
45
n
8
ARG
45
A
GLU
46
n
9
GLU
46
A
GLU
47
n
10
GLU
47
A
ASP
48
n
11
ASP
48
A
GLU
49
n
12
GLU
49
A
LYS
50
n
13
LYS
50
A
LEU
51
n
14
LEU
51
A
LYS
52
n
15
LYS
52
A
LYS
53
n
16
LYS
53
A
LEU
54
n
17
LEU
54
A
VAL
55
n
18
VAL
55
A
GLU
56
n
19
GLU
56
A
GLN
57
n
20
GLN
57
A
ASN
58
n
21
ASN
58
A
GLY
59
n
22
GLY
59
A
THR
60
n
23
THR
60
A
ASP
61
n
24
ASP
61
A
ASP
62
n
25
ASP
62
A
TRP
63
n
26
TRP
63
A
LYS
64
n
27
LYS
64
A
VAL
65
n
28
VAL
65
A
ILE
66
n
29
ILE
66
A
ALA
67
n
30
ALA
67
A
ASN
68
n
31
ASN
68
A
TYR
69
n
32
TYR
69
A
LEU
70
n
33
LEU
70
A
PRO
71
n
34
PRO
71
A
ASN
72
n
35
ASN
72
A
ARG
73
n
36
ARG
73
A
THR
74
n
37
THR
74
A
ASP
75
n
38
ASP
75
A
VAL
76
n
39
VAL
76
A
GLN
77
n
40
GLN
77
A
CYS
78
n
41
CYS
78
A
GLN
79
n
42
GLN
79
A
HIS
80
n
43
HIS
80
A
ARG
81
n
44
ARG
81
A
TRP
82
n
45
TRP
82
A
GLN
83
n
46
GLN
83
A
LYS
84
n
47
LYS
84
A
VAL
85
n
48
VAL
85
A
LEU
86
n
49
LEU
86
A
ASN
87
n
50
ASN
87
A
PRO
88
n
51
PRO
88
A
GLU
89
n
52
GLU
89
A
NH2
90
n
53
NH2
90
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ASN
58
-90.15
-79.11
1
A
THR
60
-83.83
48.96
1
A
ASP
61
-90.45
-134.11
1
A
ASN
72
76.96
-44.60
1
A
TRP
82
-84.91
-75.55
1
A
VAL
85
-134.88
-75.08
1
A
ASN
87
-153.75
79.70
refinement
AMBER
MYB PROTO-ONCOGENE PROTEIN
MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1
1
Y
N
A
ARG
45
A
ARG
8
HELX_P
A
ASN
58
A
ASN
21
1
H1
14
A
TRP
63
A
TRP
26
HELX_P
A
TYR
69
A
TYR
32
1
H2
7
A
ASP
75
A
ASP
38
HELX_P
A
LYS
84
A
LYS
47
1
H3
10
covale
1.333
A
GLU
89
A
C
GLU
52
1_555
A
NH2
90
A
N
NH2
53
1_555
DNA BINDING PROTEIN
PROTOONCOGENE PRODUCT, DNA BINDING PROTEIN
MYB_MOUSE
UNP
1
1
P06876
MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQH
RWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK
RLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQEPSKASQTPVATSFQKNNHLMGFGHASPPSQLSPSGQSSV
NSEYPYYHIAEAQNISSHVPYPVALHVNIVNVPQPAAAAIQRHYNDEDPEKEKRIKELELLLMSTENELKGQQALPTQNH
TCSYPGWHSTSIVDQTRPHGDSAPVSCLGEHHATPSLPADPGSLPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID
SFLNTSSNHESSGLDAPTLPSTPLIGHKLTPCRDQTVKTQKENSIFRTPAIKRSILESSPRTPTPFKHALAAQEIKYGPL
KMLPQTPSHAVEDLQDVIKRESDESGIVAEFQESGPPLLKKIKQEVESPTEKSGNFFCSNHWAENSLSTQLFSQASPVAD
APNILTSSVLMTPVSEDEDNVLKAFTVPKNRPLVGPLQPCSGAWEPASCGKTEDQMTASGPARKYVNAFSARTLVM
38
89
1MBE
38
89
P06876
A
1
1
52
BINDING SITE FOR RESIDUE NH2 A 90
Software
1
A
GLU
89
A
GLU
52
1
1_555
1
P 1