1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Ogata, K. Morikawa, S. Nakamura, H. Hojo, H. Yoshimura, S. Zhang, R. Aimoto, S. Ametani, Y. Hirata, Z. Sarai, A. Ishii, S. Nishimura, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat.Struct.Biol. NSBIEW 2024 1072-8368 2 309 320 10.1038/nsb0495-309 7796266 Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb. 1995 US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 79 639 Solution Structure of a Specific DNA Complex of the Myb DNA-Binding Domain with Cooperative Recognition Helices 1994 US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 89 6428 Solution Structure of a DNA-Binding Unit of Myb: A Helix-Turn-Helix-Related Motif with Conserved Tryptophans Forming a Hydrophobic Core 1992 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 GENE C-MYB, NMR, 50 STRUCTURES; ENGINEERED 6317.113 MYB PROTO-ONCOGENE PROTEIN 1 nat polymer no yes LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE(NH2) LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPEX A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus sample 10090 Mus musculus repository Initial release Version format compliance Version format compliance Database references 1 0 1995-07-31 1 1 2008-03-24 1 2 2011-07-13 1 3 2012-02-29 Y 1995-05-19 REL REL 50 6.8 290 K 6.8 300 K A TOTAL OF 50 STRUCTURES WERE CALCULATED. THE COORDINATES OF THE RESTRAINED MINIMIZED AVERAGED STRUCTURE WERE OBTAINED BY AVERAGING THE COORDINATES OF THE INDIVIDUAL STRUCTURES, AND THEN BY SUBJECTING THE RESULTING COORDINATES TO THE RESTRAINED ENERGY MINIMIZATION BY PRESTO. NAKAI,KIDERA,NAKAMURA refinement EMBOSS MORIKAMI,NAKAI,KIDERA,SAITO,NAKAMURA refinement PRESTO LEU 38 n 1 LEU 38 A GLY 39 n 2 GLY 39 A LYS 40 n 3 LYS 40 A THR 41 n 4 THR 41 A ARG 42 n 5 ARG 42 A TRP 43 n 6 TRP 43 A THR 44 n 7 THR 44 A ARG 45 n 8 ARG 45 A GLU 46 n 9 GLU 46 A GLU 47 n 10 GLU 47 A ASP 48 n 11 ASP 48 A GLU 49 n 12 GLU 49 A LYS 50 n 13 LYS 50 A LEU 51 n 14 LEU 51 A LYS 52 n 15 LYS 52 A LYS 53 n 16 LYS 53 A LEU 54 n 17 LEU 54 A VAL 55 n 18 VAL 55 A GLU 56 n 19 GLU 56 A GLN 57 n 20 GLN 57 A ASN 58 n 21 ASN 58 A GLY 59 n 22 GLY 59 A THR 60 n 23 THR 60 A ASP 61 n 24 ASP 61 A ASP 62 n 25 ASP 62 A TRP 63 n 26 TRP 63 A LYS 64 n 27 LYS 64 A VAL 65 n 28 VAL 65 A ILE 66 n 29 ILE 66 A ALA 67 n 30 ALA 67 A ASN 68 n 31 ASN 68 A TYR 69 n 32 TYR 69 A LEU 70 n 33 LEU 70 A PRO 71 n 34 PRO 71 A ASN 72 n 35 ASN 72 A ARG 73 n 36 ARG 73 A THR 74 n 37 THR 74 A ASP 75 n 38 ASP 75 A VAL 76 n 39 VAL 76 A GLN 77 n 40 GLN 77 A CYS 78 n 41 CYS 78 A GLN 79 n 42 GLN 79 A HIS 80 n 43 HIS 80 A ARG 81 n 44 ARG 81 A TRP 82 n 45 TRP 82 A GLN 83 n 46 GLN 83 A LYS 84 n 47 LYS 84 A VAL 85 n 48 VAL 85 A LEU 86 n 49 LEU 86 A ASN 87 n 50 ASN 87 A PRO 88 n 51 PRO 88 A GLU 89 n 52 GLU 89 A NH2 90 n 53 NH2 90 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 2 A ARG 73 0.125 SIDE CHAIN 4 A ARG 73 0.115 SIDE CHAIN 9 A ARG 73 0.133 SIDE CHAIN 18 A ARG 73 0.102 SIDE CHAIN 19 A ARG 73 0.093 SIDE CHAIN 47 A ARG 81 0.143 SIDE CHAIN 1 A ASP 61 -90.42 -135.55 1 A ASN 72 75.41 -40.36 1 A ARG 81 -85.48 37.96 1 A TRP 82 -161.91 -67.48 1 A GLN 83 -78.60 42.22 1 A LYS 84 -161.17 -18.66 1 A VAL 85 -141.95 -66.14 1 A ASN 87 -160.66 82.97 2 A LYS 40 57.44 18.16 2 A ASN 58 -85.88 -85.37 2 A ASP 61 -90.25 -134.64 2 A ASP 62 -67.89 99.17 2 A PRO 71 -67.56 75.16 2 A ASN 72 175.19 -35.22 2 A TRP 82 -80.71 -74.55 2 A VAL 85 -134.70 -71.95 2 A ASN 87 -158.34 84.00 3 A LYS 40 54.92 76.00 3 A THR 41 43.26 73.79 3 A ASN 58 -90.11 -80.31 3 A THR 60 -89.95 36.25 3 A ASP 62 67.36 175.58 3 A ARG 81 -78.49 47.85 3 A TRP 82 -170.40 -70.69 3 A VAL 85 -142.82 -83.70 3 A ASN 87 -160.24 86.59 4 A LYS 40 64.02 96.23 4 A ASN 58 -83.05 -81.43 4 A THR 60 -91.62 30.87 4 A ASP 61 -90.27 -109.10 4 A ASP 62 -69.04 95.41 4 A ASN 72 -152.54 -50.10 4 A ARG 81 -77.59 40.84 4 A TRP 82 -166.75 -69.44 4 A VAL 85 -166.53 -73.12 4 A ASN 87 -155.19 87.94 5 A THR 41 29.72 75.24 5 A ASN 58 -90.01 -79.55 5 A ASP 61 -90.31 -69.11 5 A VAL 85 -139.47 -68.01 5 A ASN 87 -160.32 94.87 5 A PRO 88 -67.76 93.80 6 A TRP 43 63.38 89.45 6 A ASN 58 -90.31 -84.24 6 A ASP 61 -90.94 -136.02 6 A ASN 72 76.87 -44.06 6 A ARG 81 -79.56 43.41 6 A TRP 82 -166.85 -64.69 6 A GLN 83 -76.88 27.02 6 A LYS 84 -161.44 1.90 6 A VAL 85 -143.19 -70.81 6 A ASN 87 -160.92 76.37 7 A ASN 58 -90.14 -81.31 7 A ASP 61 -90.02 -141.00 7 A TRP 63 65.64 -2.34 7 A TYR 69 -91.65 30.67 7 A PRO 71 -64.50 -149.62 7 A VAL 85 -142.50 -47.32 7 A ASN 87 -160.31 86.51 8 A THR 41 68.70 108.15 8 A ASP 61 -90.32 -135.76 8 A VAL 85 -139.87 -57.25 8 A ASN 87 -160.22 113.91 9 A ASN 58 -85.65 -75.27 9 A PRO 71 -72.57 39.80 9 A ASN 72 -149.26 11.20 9 A TRP 82 -80.71 -71.80 9 A VAL 85 -140.03 -69.55 9 A ASN 87 -160.03 83.06 10 A ASN 58 -90.57 -82.54 10 A ASP 61 -89.15 -138.14 10 A TRP 63 64.06 -2.41 10 A PRO 71 -67.62 76.29 10 A ASN 72 175.50 -41.69 10 A GLN 83 -77.65 43.69 10 A LYS 84 -161.11 -41.29 10 A VAL 85 -134.29 -44.92 11 A TRP 43 65.17 167.39 11 A THR 60 -81.34 45.59 11 A ASP 61 -90.45 -133.37 11 A ASN 72 76.15 -38.19 11 A VAL 85 -139.52 -61.64 12 A LYS 40 -83.95 48.66 12 A THR 41 -144.91 24.94 12 A TRP 63 -140.01 -29.72 12 A GLN 83 -75.49 42.69 12 A LYS 84 -161.29 -18.05 12 A VAL 85 -131.15 -60.07 12 A ASN 87 -160.29 85.64 13 A ASN 58 -84.56 -81.51 13 A ASP 61 -90.22 -76.06 13 A ASN 72 -177.97 -36.42 13 A VAL 85 -144.68 42.25 13 A PRO 88 -63.25 92.16 14 A TRP 43 62.87 161.17 14 A ASP 61 -83.50 -133.72 14 A TRP 63 68.98 -11.47 14 A TRP 82 -74.49 -71.43 14 A VAL 85 -140.49 -67.06 14 A ASN 87 -160.30 108.41 15 A LYS 40 -83.95 48.66 15 A THR 41 -144.91 24.94 15 A TRP 63 -140.01 -29.72 15 A GLN 83 -75.49 42.69 15 A LYS 84 -161.29 -18.05 15 A VAL 85 -131.15 -60.07 15 A ASN 87 -160.29 85.64 16 A TRP 43 63.21 166.74 16 A THR 60 -83.10 42.98 16 A ASP 61 -90.76 -117.24 16 A GLN 83 -77.08 44.59 16 A LYS 84 -161.84 -39.82 16 A ASN 87 -156.40 85.96 17 A TRP 63 -141.45 -34.89 17 A PRO 71 -68.11 74.97 17 A ASN 72 177.87 -33.12 17 A ARG 81 -81.26 43.77 17 A TRP 82 -167.43 -72.57 17 A VAL 85 -144.90 -86.75 17 A ASN 87 -155.84 86.43 18 A THR 41 -90.72 35.43 18 A ASN 58 -87.91 -82.58 18 A THR 60 -86.08 41.81 18 A ASP 61 -90.60 -124.51 18 A TRP 82 -74.88 -74.07 18 A VAL 85 -136.78 -63.39 18 A ASN 87 -160.37 92.34 19 A THR 41 38.07 74.99 19 A TRP 43 64.21 166.80 19 A GLU 56 -84.30 30.57 19 A GLN 57 -142.77 -57.30 19 A THR 60 -141.42 29.66 19 A ASP 61 -90.88 -69.95 19 A TRP 63 70.14 -26.76 19 A PRO 71 -67.58 78.84 19 A ASN 72 -177.10 -37.59 19 A LEU 86 64.45 125.18 19 A ASN 87 -160.45 85.57 20 A TRP 43 62.03 172.91 20 A ASN 58 -85.94 -81.06 20 A ASP 61 -90.23 -73.26 20 A GLN 83 -75.91 34.95 20 A LYS 84 -160.84 -7.85 20 A VAL 85 -137.34 -63.01 20 A ASN 87 -160.34 111.56 21 A ASN 58 -74.58 -71.30 21 A THR 74 -67.39 -178.91 21 A TRP 82 -79.80 -70.76 21 A VAL 85 -166.74 79.65 21 A PRO 88 -56.68 98.35 22 A LYS 40 53.86 -142.58 22 A ASN 58 -90.14 -81.96 22 A ASP 61 -90.63 -134.83 22 A ASN 72 73.92 -1.37 22 A GLN 83 -77.29 46.81 22 A LYS 84 -161.46 -34.07 22 A VAL 85 -120.94 -61.12 22 A ASN 87 -157.16 88.81 23 A LYS 40 -155.32 68.87 23 A THR 41 35.49 65.10 23 A TRP 43 63.25 176.09 23 A ASN 58 -90.53 -80.98 23 A THR 60 -155.08 66.23 23 A ASP 61 -90.17 -79.86 23 A TRP 63 68.60 -17.91 23 A TRP 82 -78.31 -75.71 23 A VAL 85 -138.59 -74.38 23 A ASN 87 -156.24 77.59 24 A TRP 43 62.30 171.45 24 A ASN 58 -90.35 -79.17 24 A ASP 61 -90.45 -76.59 24 A TRP 82 -90.57 -73.70 24 A VAL 85 -136.95 -75.91 25 A ASN 58 -79.01 -80.10 25 A TRP 63 -142.65 -29.73 25 A ASN 72 76.52 -37.77 25 A TRP 82 -81.76 -74.69 25 A VAL 85 -133.92 -74.03 26 A LYS 40 52.37 80.83 26 A THR 41 66.58 89.05 26 A ASP 61 -90.81 -135.36 26 A ASN 72 76.39 -46.41 26 A GLN 83 -75.42 32.87 26 A LYS 84 -161.32 -36.75 26 A VAL 85 -117.45 -71.70 26 A ASN 87 -160.46 75.73 27 A LYS 40 -103.80 -150.08 27 A ASN 58 -91.06 -77.30 27 A ASP 62 63.97 106.70 27 A PRO 71 -64.94 -147.50 27 A ASN 72 -68.67 75.45 27 A TRP 82 -86.00 -78.23 27 A VAL 85 -130.36 -74.58 27 A LEU 86 -69.64 96.87 27 A ASN 87 -156.56 76.41 28 A ASN 58 -90.09 -74.69 28 A ASP 61 -84.03 -133.77 28 A TRP 82 -71.89 -70.11 28 A VAL 85 -139.20 -64.06 28 A ASN 87 -160.21 95.51 28 A PRO 88 -69.05 89.03 29 A THR 41 61.06 83.74 29 A ASN 58 -74.82 -71.98 29 A ASP 61 -90.51 -71.60 29 A GLN 83 -75.39 39.68 29 A LYS 84 -162.33 -25.74 29 A VAL 85 -121.54 -61.15 29 A ASN 87 -160.26 98.51 30 A THR 41 53.44 73.71 30 A ASN 58 -89.68 -81.41 30 A ASP 61 -90.40 -72.90 30 A TRP 82 -90.21 -73.46 30 A VAL 85 -136.63 -76.26 30 A ASN 87 -157.71 83.54 31 A ASN 58 -90.60 -80.01 31 A ASP 61 -90.38 -79.95 31 A TRP 82 -75.23 -72.54 31 A VAL 85 -136.66 -66.97 31 A ASN 87 -160.23 90.11 32 A LYS 40 69.37 -68.75 32 A THR 41 -156.39 86.85 32 A ASP 61 -90.15 -136.37 32 A ASN 72 75.02 -39.03 32 A VAL 85 -141.58 -68.62 32 A ASN 87 -39.97 107.41 33 A TRP 43 64.26 174.74 33 A ASN 58 -78.19 -78.40 33 A GLN 83 -77.05 44.04 33 A LYS 84 -162.08 -36.16 33 A VAL 85 -125.94 -144.12 33 A LEU 86 48.12 -114.72 34 A LYS 40 68.65 -72.83 34 A ASN 58 -80.16 -80.69 34 A ASP 61 -90.25 -82.92 34 A ASN 72 75.29 -31.15 34 A GLN 83 -76.15 45.46 34 A LYS 84 -160.72 0.65 34 A VAL 85 -164.21 -46.38 34 A ASN 87 -160.35 89.38 35 A LYS 40 -94.25 -151.73 35 A ASP 61 -85.84 -142.27 35 A TRP 63 70.70 -20.72 35 A ASN 72 77.28 -42.47 35 A GLN 83 -74.60 40.23 35 A LYS 84 -161.16 -26.14 35 A VAL 85 -124.32 -60.76 35 A ASN 87 -160.38 91.25 36 A TRP 43 63.42 -177.02 36 A GLN 57 -123.52 -59.42 36 A ASN 72 70.71 -0.89 36 A GLN 83 -77.77 48.89 36 A LYS 84 -161.68 -26.57 36 A VAL 85 -143.77 -35.70 36 A PRO 88 -67.59 77.97 37 A ASP 61 -90.46 -80.93 37 A TRP 82 -80.15 -73.63 37 A VAL 85 -136.42 -74.47 38 A ASN 58 -86.01 -83.36 38 A ASP 61 -79.59 -79.10 38 A ASN 72 74.95 -47.27 38 A GLN 83 -81.55 38.62 38 A LYS 84 -161.01 -42.02 38 A LEU 86 58.95 79.93 38 A ASN 87 -160.19 82.34 39 A LYS 40 51.43 -118.90 39 A ASP 61 -90.31 -76.36 39 A TRP 63 67.23 -13.93 39 A ASN 72 76.82 -49.01 39 A TRP 82 -76.13 -73.37 39 A VAL 85 -136.66 -68.66 39 A ASN 87 -151.51 87.99 40 A ASN 58 -84.56 -81.51 40 A ASP 61 -90.22 -76.06 40 A ASN 72 -177.97 -36.42 40 A VAL 85 -144.68 42.25 40 A PRO 88 -63.25 92.16 41 A LYS 40 63.12 -80.47 41 A ASN 58 -89.81 -78.12 41 A ASP 61 -90.38 -75.86 41 A ASN 72 77.35 -39.20 41 A TRP 82 -74.17 -73.83 41 A VAL 85 -138.66 -65.30 41 A ASN 87 -160.30 84.42 42 A THR 41 35.95 60.16 42 A ASP 61 -86.95 -139.24 42 A TRP 63 67.92 -12.84 42 A VAL 85 -134.81 -75.95 43 A LYS 40 61.06 -159.74 43 A LYS 53 -164.08 -49.34 43 A ASN 58 -89.94 -75.63 43 A ASP 62 63.38 103.29 43 A ASN 72 75.05 -37.57 43 A TRP 82 -79.86 -72.87 43 A VAL 85 -138.11 -72.24 44 A PRO 71 -69.47 88.91 44 A ASN 72 55.58 72.53 44 A GLN 83 -76.64 43.87 44 A LYS 84 -161.96 -31.41 44 A ASN 87 -160.09 73.61 45 A THR 41 38.62 61.80 45 A ASN 58 -90.72 -83.13 45 A THR 60 -91.38 32.04 45 A ASP 61 -90.22 -88.48 45 A PRO 71 -67.59 74.96 45 A ASN 72 174.12 -36.00 45 A VAL 85 -142.74 -59.84 46 A THR 41 57.46 88.60 46 A ASN 58 -89.68 -79.52 46 A PRO 71 -68.28 83.38 46 A GLN 83 -77.53 47.32 46 A LYS 84 -161.61 -32.10 46 A VAL 85 -126.49 -61.55 46 A ASN 87 -160.48 81.17 47 A LYS 40 57.12 -133.28 47 A ARG 42 -75.10 -94.68 47 A TRP 43 62.71 176.66 47 A ASN 58 -90.41 -80.83 47 A ASP 61 -90.40 -136.40 47 A ASN 72 75.35 -32.59 47 A LYS 84 -161.44 -39.04 47 A VAL 85 -128.78 -52.46 47 A ASN 87 -158.39 84.40 48 A TRP 43 65.51 176.40 48 A ASP 61 -90.33 -139.02 48 A ASN 72 77.28 -44.05 48 A TRP 82 -81.74 -74.41 48 A VAL 85 -136.03 -74.36 49 A ASN 58 -90.48 -76.89 49 A ASP 61 -90.63 -79.05 49 A TRP 63 69.53 -26.33 49 A PRO 71 -69.12 75.59 49 A ASN 72 -176.86 -37.26 49 A TRP 82 -74.13 -71.74 49 A VAL 85 -137.32 -66.16 49 A ASN 87 -160.24 85.37 50 A TRP 43 62.42 -174.63 50 A ASN 58 -84.12 -81.73 50 A ASP 61 -90.15 -89.00 50 A PRO 71 -69.85 70.19 50 A ASN 72 -179.02 -39.95 50 A VAL 85 -137.63 -55.75 refinement AMBER MYB PROTO-ONCOGENE PROTEIN MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1 1 Y N A ARG 45 A ARG 8 HELX_P A ASN 58 A ASN 21 1 H1 14 A TRP 63 A TRP 26 HELX_P A TYR 69 A TYR 32 1 H2 7 A ASP 75 A ASP 38 HELX_P A LYS 84 A LYS 47 1 H3 10 covale 1.334 A GLU 89 A C GLU 52 1_555 A NH2 90 A N NH2 53 1_555 DNA BINDING PROTEIN PROTOONCOGENE PRODUCT, DNA BINDING PROTEIN MYB_MOUSE UNP 1 1 P06876 MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQH RWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK RLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQEPSKASQTPVATSFQKNNHLMGFGHASPPSQLSPSGQSSV NSEYPYYHIAEAQNISSHVPYPVALHVNIVNVPQPAAAAIQRHYNDEDPEKEKRIKELELLLMSTENELKGQQALPTQNH TCSYPGWHSTSIVDQTRPHGDSAPVSCLGEHHATPSLPADPGSLPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID SFLNTSSNHESSGLDAPTLPSTPLIGHKLTPCRDQTVKTQKENSIFRTPAIKRSILESSPRTPTPFKHALAAQEIKYGPL KMLPQTPSHAVEDLQDVIKRESDESGIVAEFQESGPPLLKKIKQEVESPTEKSGNFFCSNHWAENSLSTQLFSQASPVAD APNILTSSVLMTPVSEDEDNVLKAFTVPKNRPLVGPLQPCSGAWEPASCGKTEDQMTASGPARKYVNAFSARTLVM 38 89 1MBF 38 89 P06876 A 1 1 52 BINDING SITE FOR RESIDUE NH2 A 90 Software 2 A PRO 88 A PRO 51 2 1_555 A GLU 89 A GLU 52 2 1_555 1 P 1