1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Ogata, K.
Morikawa, S.
Nakamura, H.
Hojo, H.
Yoshimura, S.
Zhang, R.
Aimoto, S.
Ametani, Y.
Hirata, Z.
Sarai, A.
Ishii, S.
Nishimura, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
2
309
320
10.1038/nsb0495-309
7796266
Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
1995
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
79
639
Solution Structure of a Specific DNA Complex of the Myb DNA-Binding Domain with Cooperative Recognition Helices
1994
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
89
6428
Solution Structure of a DNA-Binding Unit of Myb: A Helix-Turn-Helix-Related Motif with Conserved Tryptophans Forming a Hydrophobic Core
1992
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
GENE C-MYB, NMR, MINIMIZED AVERAGE STRUCTURE; ENGINEERED
6259.194
MYB PROTO-ONCOGENE PROTEIN
1
nat
polymer
no
yes
VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV(NH2)
VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVX
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
sample
10090
Mus musculus
repository
Initial release
Version format compliance
Version format compliance
Database references
1
0
1995-07-31
1
1
2008-03-24
1
2
2011-07-13
1
3
2012-02-29
Y
1995-05-19
REL
1
6.8
290
K
6.8
300
K
A TOTAL OF 50 STRUCTURES WERE CALCULATED. THE COORDINATES
OF THE RESTRAINED MINIMIZED AVERAGED STRUCTURE WERE
OBTAINED BY AVERAGING THE COORDINATES OF THE INDIVIDUAL
STRUCTURES, AND THEN BY SUBJECTING THE RESULTING
COORDINATES TO THE RESTRAINED ENERGY MINIMIZATION BY
PRESTO.
NAKAI,KIDERA,NAKAMURA
refinement
EMBOSS
MORIKAMI,NAKAI,KIDERA,SAITO,NAKAMURA
refinement
PRESTO
VAL
142
n
1
VAL
142
A
LYS
143
n
2
LYS
143
A
LYS
144
n
3
LYS
144
A
THR
145
n
4
THR
145
A
SER
146
n
5
SER
146
A
TRP
147
n
6
TRP
147
A
THR
148
n
7
THR
148
A
GLU
149
n
8
GLU
149
A
GLU
150
n
9
GLU
150
A
GLU
151
n
10
GLU
151
A
ASP
152
n
11
ASP
152
A
ARG
153
n
12
ARG
153
A
ILE
154
n
13
ILE
154
A
ILE
155
n
14
ILE
155
A
TYR
156
n
15
TYR
156
A
GLN
157
n
16
GLN
157
A
ALA
158
n
17
ALA
158
A
HIS
159
n
18
HIS
159
A
LYS
160
n
19
LYS
160
A
ARG
161
n
20
ARG
161
A
LEU
162
n
21
LEU
162
A
GLY
163
n
22
GLY
163
A
ASN
164
n
23
ASN
164
A
ARG
165
n
24
ARG
165
A
TRP
166
n
25
TRP
166
A
ALA
167
n
26
ALA
167
A
GLU
168
n
27
GLU
168
A
ILE
169
n
28
ILE
169
A
ALA
170
n
29
ALA
170
A
LYS
171
n
30
LYS
171
A
LEU
172
n
31
LEU
172
A
LEU
173
n
32
LEU
173
A
PRO
174
n
33
PRO
174
A
GLY
175
n
34
GLY
175
A
ARG
176
n
35
ARG
176
A
THR
177
n
36
THR
177
A
ASP
178
n
37
ASP
178
A
ASN
179
n
38
ASN
179
A
ALA
180
n
39
ALA
180
A
ILE
181
n
40
ILE
181
A
LYS
182
n
41
LYS
182
A
ASN
183
n
42
ASN
183
A
HIS
184
n
43
HIS
184
A
TRP
185
n
44
TRP
185
A
ASN
186
n
45
ASN
186
A
SER
187
n
46
SER
187
A
THR
188
n
47
THR
188
A
MET
189
n
48
MET
189
A
ARG
190
n
49
ARG
190
A
ARG
191
n
50
ARG
191
A
LYS
192
n
51
LYS
192
A
VAL
193
n
52
VAL
193
A
NH2
194
n
53
NH2
194
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
THR
145
42.86
-153.39
1
A
TRP
147
62.48
115.78
1
A
ASN
164
-83.22
33.36
1
A
SER
187
-165.57
-52.81
1
A
MET
189
-106.18
66.54
1
A
ARG
191
-119.05
67.21
refinement
AMBER
MYB PROTO-ONCOGENE PROTEIN
MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1
Y
N
A
GLU
149
A
GLU
8
HELX_P
A
LEU
162
A
LEU
21
1
H1
14
A
TRP
166
A
TRP
25
HELX_P
A
LEU
172
A
LEU
31
1
H2
7
A
ASP
178
A
ASP
37
HELX_P
A
SER
187
A
SER
46
1
H3
10
covale
1.337
A
VAL
193
A
C
VAL
52
1_555
A
NH2
194
A
N
NH2
53
1_555
DNA BINDING PROTEIN
PROTOONCOGENE PRODUCT, DNA BINDING PROTEIN
MYB_MOUSE
UNP
1
1
P06876
MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQH
RWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK
RLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQEPSKASQTPVATSFQKNNHLMGFGHASPPSQLSPSGQSSV
NSEYPYYHIAEAQNISSHVPYPVALHVNIVNVPQPAAAAIQRHYNDEDPEKEKRIKELELLLMSTENELKGQQALPTQNH
TCSYPGWHSTSIVDQTRPHGDSAPVSCLGEHHATPSLPADPGSLPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID
SFLNTSSNHESSGLDAPTLPSTPLIGHKLTPCRDQTVKTQKENSIFRTPAIKRSILESSPRTPTPFKHALAAQEIKYGPL
KMLPQTPSHAVEDLQDVIKRESDESGIVAEFQESGPPLLKKIKQEVESPTEKSGNFFCSNHWAENSLSTQLFSQASPVAD
APNILTSSVLMTPVSEDEDNVLKAFTVPKNRPLVGPLQPCSGAWEPASCGKTEDQMTASGPARKYVNAFSARTLVM
142
193
1MBJ
142
193
P06876
A
1
1
52
BINDING SITE FOR RESIDUE NH2 A 194
Software
2
A
TYR
156
A
TYR
15
2
1_555
A
VAL
193
A
VAL
52
2
1_555
1
P 1