1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Ogata, K.
Morikawa, S.
Nakamura, H.
Hojo, H.
Yoshimura, S.
Zhang, R.
Aimoto, S.
Ametani, Y.
Hirata, Z.
Sarai, A.
Ishii, S.
Nishimura, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
2
309
320
10.1038/nsb0495-309
7796266
Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
1995
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
79
639
Solution Structure of a Specific DNA Complex of the Myb DNA-Binding Domain with Cooperative Recognition Helices
1994
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
89
6428
Solution Structure of a DNA-Binding Unit of Myb: A Helix-Turn-Helix-Related Motif with Conserved Tryptophans Forming a Hydrophobic Core
1992
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
GENE C-MYB, NMR, 50 STRUCTURES; ENGINEERED
6259.194
MYB PROTO-ONCOGENE PROTEIN
1
nat
polymer
no
yes
VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV(NH2)
VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVX
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
sample
10090
Mus musculus
repository
Initial release
Version format compliance
Version format compliance
Database references
1
0
1995-07-31
1
1
2008-03-24
1
2
2011-07-13
1
3
2012-02-29
Y
1995-05-19
REL
REL
50
6.8
290
K
6.8
300
K
A TOTAL OF 50 STRUCTURES WERE CALCULATED. THE COORDINATES
OF THE RESTRAINED MINIMIZED AVERAGED STRUCTURE WERE
OBTAINED BY AVERAGING THE COORDINATES OF THE INDIVIDUAL
STRUCTURES, AND THEN BY SUBJECTING THE RESULTING
COORDINATES TO THE RESTRAINED ENERGY MINIMIZATION BY
PRESTO.
NAKAI,KIDERA,NAKAMURA
refinement
EMBOSS
MORIKAMI,NAKAI,KIDERA,SAITO,NAKAMURA
refinement
PRESTO
VAL
142
n
1
VAL
142
A
LYS
143
n
2
LYS
143
A
LYS
144
n
3
LYS
144
A
THR
145
n
4
THR
145
A
SER
146
n
5
SER
146
A
TRP
147
n
6
TRP
147
A
THR
148
n
7
THR
148
A
GLU
149
n
8
GLU
149
A
GLU
150
n
9
GLU
150
A
GLU
151
n
10
GLU
151
A
ASP
152
n
11
ASP
152
A
ARG
153
n
12
ARG
153
A
ILE
154
n
13
ILE
154
A
ILE
155
n
14
ILE
155
A
TYR
156
n
15
TYR
156
A
GLN
157
n
16
GLN
157
A
ALA
158
n
17
ALA
158
A
HIS
159
n
18
HIS
159
A
LYS
160
n
19
LYS
160
A
ARG
161
n
20
ARG
161
A
LEU
162
n
21
LEU
162
A
GLY
163
n
22
GLY
163
A
ASN
164
n
23
ASN
164
A
ARG
165
n
24
ARG
165
A
TRP
166
n
25
TRP
166
A
ALA
167
n
26
ALA
167
A
GLU
168
n
27
GLU
168
A
ILE
169
n
28
ILE
169
A
ALA
170
n
29
ALA
170
A
LYS
171
n
30
LYS
171
A
LEU
172
n
31
LEU
172
A
LEU
173
n
32
LEU
173
A
PRO
174
n
33
PRO
174
A
GLY
175
n
34
GLY
175
A
ARG
176
n
35
ARG
176
A
THR
177
n
36
THR
177
A
ASP
178
n
37
ASP
178
A
ASN
179
n
38
ASN
179
A
ALA
180
n
39
ALA
180
A
ILE
181
n
40
ILE
181
A
LYS
182
n
41
LYS
182
A
ASN
183
n
42
ASN
183
A
HIS
184
n
43
HIS
184
A
TRP
185
n
44
TRP
185
A
ASN
186
n
45
ASN
186
A
SER
187
n
46
SER
187
A
THR
188
n
47
THR
188
A
MET
189
n
48
MET
189
A
ARG
190
n
49
ARG
190
A
ARG
191
n
50
ARG
191
A
LYS
192
n
51
LYS
192
A
VAL
193
n
52
VAL
193
A
NH2
194
n
53
NH2
194
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
11
A
ARG
153
0.077
SIDE CHAIN
17
A
ARG
153
0.076
SIDE CHAIN
23
A
ARG
153
0.085
SIDE CHAIN
33
A
ARG
165
0.093
SIDE CHAIN
37
A
ARG
176
0.078
SIDE CHAIN
49
A
ARG
153
0.093
SIDE CHAIN
49
A
ARG
165
0.098
SIDE CHAIN
1
A
LYS
144
-163.84
-43.53
1
A
ASN
164
-79.82
42.46
1
A
PRO
174
-70.09
-93.51
1
A
SER
187
-173.83
-53.29
2
A
LYS
143
40.43
-142.04
2
A
LYS
144
63.18
-170.23
2
A
THR
145
-152.49
-42.72
2
A
SER
146
77.02
113.51
2
A
TRP
147
60.13
-174.08
2
A
LEU
162
-97.07
-63.39
2
A
MET
189
-100.15
-149.08
2
A
ARG
190
177.57
-53.26
3
A
LYS
144
58.34
79.95
3
A
MET
189
-82.96
-89.48
3
A
ARG
190
76.91
-55.83
4
A
LYS
143
-154.90
-59.74
4
A
LYS
144
60.61
-171.01
4
A
SER
146
-170.76
72.20
4
A
TRP
147
63.33
169.56
4
A
PRO
174
-62.45
-162.31
4
A
THR
177
71.89
148.77
4
A
ASN
186
-79.14
49.05
4
A
SER
187
-169.03
-61.35
4
A
MET
189
-85.27
-104.54
4
A
ARG
190
37.97
39.91
4
A
ARG
191
-148.72
47.79
4
A
LYS
192
-131.87
-61.20
5
A
THR
145
-161.98
52.77
5
A
SER
146
-80.33
44.63
5
A
TRP
147
56.68
-174.94
5
A
ASN
164
-78.10
39.94
5
A
THR
188
-144.56
-72.77
5
A
MET
189
-90.08
38.46
5
A
LYS
192
73.95
-53.95
6
A
LYS
144
-106.59
-67.69
6
A
THR
145
-145.32
27.34
6
A
TRP
147
62.04
102.96
6
A
ARG
176
-138.09
-50.84
6
A
THR
177
65.94
169.90
6
A
SER
187
-173.02
-56.86
6
A
MET
189
-118.28
53.49
7
A
ASN
164
-83.35
34.23
7
A
MET
189
-102.43
52.53
7
A
ARG
191
68.18
-75.06
7
A
LYS
192
49.99
76.12
8
A
ASN
164
-83.08
30.58
8
A
THR
177
68.77
154.92
8
A
MET
189
-91.54
-118.67
8
A
ARG
191
-131.22
-118.17
9
A
LYS
143
66.13
-70.75
9
A
LYS
144
77.04
131.91
9
A
TRP
147
69.47
105.17
9
A
LEU
162
-134.06
-53.53
9
A
ASN
186
-77.47
29.38
9
A
SER
187
-150.82
-57.75
10
A
SER
146
-68.44
-176.99
10
A
TRP
147
64.01
168.21
10
A
LEU
162
-90.36
-60.64
10
A
ASN
164
-81.90
38.10
10
A
ASN
186
-79.83
35.61
10
A
SER
187
-164.36
-53.89
11
A
LYS
144
-95.84
-143.37
11
A
TRP
147
63.31
174.82
11
A
ASN
164
-79.17
41.34
11
A
PRO
174
-70.78
-93.02
11
A
SER
187
-160.29
-47.96
11
A
THR
188
-145.89
16.05
11
A
MET
189
-146.31
26.93
12
A
LYS
144
43.24
-149.99
12
A
TRP
147
69.63
146.16
12
A
ASN
164
-85.60
34.28
12
A
PRO
174
-62.50
-157.40
12
A
SER
187
-168.73
-59.70
12
A
MET
189
-98.11
-99.84
12
A
ARG
190
65.51
-172.25
12
A
ARG
191
73.90
-47.18
12
A
LYS
192
77.06
-60.30
13
A
THR
145
64.65
-173.44
13
A
SER
146
63.89
-145.98
13
A
ASN
164
-81.41
37.43
13
A
THR
188
-143.25
-65.11
13
A
MET
189
-88.01
49.53
14
A
LYS
144
-147.89
-57.40
14
A
THR
145
45.48
-105.40
14
A
SER
146
64.76
-176.44
14
A
TRP
147
60.74
177.90
14
A
LEU
162
-97.50
-65.96
14
A
ASN
164
-81.71
36.72
14
A
PRO
174
-70.76
-93.67
14
A
THR
188
-153.37
-51.05
14
A
MET
189
-79.03
38.04
15
A
THR
145
73.79
151.38
15
A
THR
188
-143.75
-63.43
15
A
MET
189
-107.82
62.58
15
A
ARG
190
-67.51
97.12
15
A
ARG
191
63.02
-174.68
16
A
LYS
143
-149.36
41.69
16
A
TRP
147
64.98
163.99
16
A
LEU
162
-96.41
-64.42
16
A
ASN
186
-89.98
45.47
16
A
SER
187
-166.43
-60.52
16
A
MET
189
-89.95
-86.53
16
A
ARG
190
59.40
177.89
17
A
LYS
143
70.50
159.96
17
A
ASN
164
-81.40
40.14
17
A
SER
187
-162.36
-51.50
17
A
MET
189
-144.29
-72.71
17
A
ARG
190
52.34
-122.54
17
A
ARG
191
51.14
72.77
18
A
PRO
174
-66.59
-77.44
18
A
SER
187
-167.79
-53.92
19
A
SER
146
60.23
-173.76
19
A
TRP
147
61.24
170.90
19
A
LEU
162
-99.92
-64.45
19
A
ASN
164
-82.12
30.72
19
A
SER
187
-165.61
-62.02
19
A
MET
189
-105.06
51.15
20
A
LYS
143
-79.07
-72.52
20
A
THR
145
58.94
-149.43
20
A
SER
146
-168.64
100.22
20
A
LEU
162
-93.07
-65.24
20
A
ASN
164
-80.43
37.08
20
A
SER
187
-170.72
-52.34
20
A
MET
189
-110.19
52.86
20
A
ARG
191
66.68
-171.36
21
A
LYS
144
-164.93
-69.33
21
A
THR
145
-153.25
-62.44
21
A
TRP
147
62.60
172.30
21
A
LEU
162
-94.56
-64.57
21
A
ASN
164
-80.13
39.17
21
A
GLU
168
-99.98
-60.57
21
A
PRO
174
-62.22
-155.91
21
A
ASN
186
-79.52
49.25
21
A
SER
187
-172.48
-56.62
21
A
MET
189
-117.62
56.88
22
A
LYS
143
56.73
73.56
22
A
SER
146
-79.15
-167.44
22
A
ASN
164
-80.08
34.89
22
A
MET
189
-87.09
-109.03
22
A
ARG
190
71.20
171.07
22
A
ARG
191
74.12
-62.61
22
A
LYS
192
76.96
106.80
23
A
LYS
143
69.86
126.34
23
A
ASN
164
-82.52
35.38
23
A
SER
187
-170.72
-61.18
24
A
LYS
144
71.73
-67.09
24
A
ASN
164
-77.72
39.14
24
A
PRO
174
-71.24
-90.34
24
A
SER
187
-173.48
-51.00
24
A
ARG
190
163.82
156.30
24
A
ARG
191
74.67
-10.88
24
A
LYS
192
70.05
-66.77
25
A
THR
145
-85.20
-121.32
25
A
TRP
147
64.92
163.33
25
A
ASN
164
-81.31
38.80
25
A
ARG
176
-131.41
-43.99
25
A
THR
177
67.00
164.45
25
A
ASN
186
-79.94
49.38
25
A
SER
187
-171.30
-60.10
25
A
MET
189
-74.80
-98.68
25
A
ARG
190
54.21
-166.68
26
A
THR
145
-153.36
-50.38
26
A
TRP
147
64.00
168.43
26
A
LEU
162
-97.41
-70.05
26
A
ASN
164
-81.68
32.67
26
A
THR
188
-123.02
-52.06
26
A
ARG
190
55.70
-141.52
26
A
ARG
191
68.48
-67.05
27
A
ASN
164
-81.79
38.02
27
A
SER
187
-167.25
-59.31
27
A
MET
189
-76.18
-80.56
27
A
ARG
191
-118.34
66.74
28
A
SER
146
-162.80
-162.15
28
A
ASN
164
-79.21
43.55
28
A
MET
189
-87.37
-104.91
28
A
ARG
191
-140.61
50.93
29
A
LYS
143
-77.76
-95.43
29
A
LYS
144
74.04
-52.98
29
A
ASN
164
-83.05
33.51
29
A
MET
189
-97.57
-84.39
30
A
TRP
147
64.25
165.21
30
A
PRO
174
-70.68
-91.76
31
A
THR
145
-83.55
-154.03
31
A
SER
146
71.44
115.77
31
A
TRP
147
60.96
-178.61
31
A
LEU
162
-108.50
-65.13
31
A
ASN
164
-86.99
34.25
31
A
ASN
186
-78.69
44.07
31
A
SER
187
-155.83
-56.40
31
A
MET
189
-90.33
-63.96
31
A
ARG
190
67.87
-157.37
31
A
ARG
191
50.71
72.32
32
A
LYS
144
59.29
77.02
32
A
THR
145
-57.97
104.37
32
A
ASN
164
-79.82
28.92
32
A
SER
187
-172.75
-63.37
32
A
MET
189
-88.03
-122.50
32
A
ARG
190
74.31
-62.67
33
A
TRP
147
61.26
179.94
33
A
LEU
162
-97.39
-62.72
33
A
MET
189
-96.84
-92.58
34
A
LYS
143
-167.72
-62.40
34
A
THR
188
-130.40
-41.57
34
A
MET
189
-83.44
48.21
34
A
ARG
191
-93.50
-63.25
34
A
LYS
192
38.02
-131.31
35
A
THR
145
39.62
-135.29
35
A
SER
146
61.24
88.35
35
A
TRP
147
69.13
144.19
35
A
LEU
162
-102.77
-68.05
35
A
PRO
174
-70.57
-93.50
35
A
MET
189
-83.86
-82.54
35
A
ARG
190
76.75
-56.71
36
A
LYS
143
70.09
167.78
36
A
ASN
164
-91.45
34.51
36
A
PRO
174
-63.23
-154.09
36
A
MET
189
-108.48
60.83
37
A
LYS
143
-160.76
-56.78
37
A
LYS
144
61.86
90.61
37
A
TRP
147
41.26
83.04
37
A
ASN
164
-78.34
42.55
37
A
THR
188
-92.20
-67.68
37
A
MET
189
-87.99
-97.32
37
A
ARG
190
77.87
-42.58
37
A
LYS
192
68.35
-91.97
38
A
THR
145
-69.82
77.31
38
A
TRP
147
60.73
170.87
38
A
ASN
164
-80.84
41.26
38
A
MET
189
-74.57
-75.57
38
A
ARG
190
73.52
-71.59
39
A
TRP
147
54.35
93.89
39
A
LEU
162
-96.72
-61.72
39
A
ASN
164
-85.22
30.06
39
A
THR
188
-152.61
-66.91
39
A
MET
189
-86.71
45.64
39
A
ARG
190
-88.63
-122.46
39
A
ARG
191
54.87
19.33
40
A
THR
145
64.65
-173.44
40
A
SER
146
63.89
-145.98
40
A
ASN
164
-81.41
37.43
40
A
THR
188
-143.25
-65.11
40
A
MET
189
-88.01
49.53
41
A
SER
146
59.52
90.98
41
A
TRP
147
63.30
178.30
41
A
LEU
162
-101.57
-66.23
41
A
ASN
164
-83.49
38.46
41
A
SER
187
-171.99
-55.78
41
A
MET
189
-114.12
-73.46
42
A
LEU
162
-90.54
-60.90
42
A
ASN
164
-87.03
30.35
42
A
MET
189
-89.76
-157.82
42
A
ARG
190
175.00
76.90
43
A
LYS
144
-155.41
-67.32
43
A
THR
145
74.01
-55.14
43
A
SER
146
63.87
-156.42
43
A
TRP
147
58.07
-169.36
43
A
ASN
164
-81.27
35.36
43
A
SER
187
-156.38
-60.31
43
A
THR
188
-140.22
51.15
43
A
MET
189
-158.41
-36.28
44
A
LYS
144
63.00
94.62
44
A
THR
145
74.95
161.37
44
A
SER
146
74.49
119.46
44
A
TRP
147
65.89
159.71
44
A
LEU
162
-92.11
-60.11
44
A
ASN
164
-82.25
30.78
44
A
THR
188
-106.30
-70.25
44
A
MET
189
-86.80
-102.88
44
A
LYS
192
71.12
-70.69
45
A
LYS
143
-153.18
61.94
45
A
LYS
144
62.18
-178.75
45
A
SER
146
62.95
-162.23
45
A
ARG
176
-136.52
-43.90
45
A
THR
177
68.28
165.90
45
A
SER
187
-167.09
-59.49
45
A
MET
189
-98.95
-86.48
45
A
ARG
190
57.11
-150.45
45
A
ARG
191
71.14
-65.31
46
A
LYS
143
-153.90
-27.38
46
A
LYS
144
56.89
-116.44
46
A
SER
146
63.21
84.02
46
A
ASN
164
-78.84
39.78
46
A
MET
189
-87.72
-85.60
47
A
LYS
143
72.32
147.72
47
A
THR
145
-153.35
41.84
47
A
TRP
147
61.33
174.25
47
A
LEU
162
-98.30
-60.11
47
A
PRO
174
-68.40
-86.70
47
A
ASN
186
-78.51
46.62
47
A
SER
187
-168.18
-59.57
47
A
MET
189
-91.17
-117.67
47
A
LYS
192
66.12
-77.58
48
A
LYS
143
-158.09
-32.03
48
A
THR
145
-153.43
83.63
48
A
SER
146
-163.68
-168.69
48
A
TRP
147
51.91
83.51
48
A
LEU
162
-103.74
-63.76
48
A
ASN
164
-82.20
34.08
48
A
PRO
174
-71.59
-94.14
48
A
THR
188
-131.31
-56.86
48
A
LYS
192
175.80
63.05
49
A
LYS
143
-108.05
-72.38
49
A
TRP
147
58.74
178.78
49
A
LEU
162
-109.33
-61.30
49
A
ASN
164
-82.59
32.67
49
A
THR
188
-97.10
-65.97
49
A
MET
189
-102.98
64.51
49
A
ARG
191
61.25
-172.19
50
A
LYS
143
-153.78
-55.19
50
A
LYS
144
-152.49
37.11
50
A
SER
146
52.51
-170.70
50
A
LEU
162
-141.26
-60.08
50
A
ASN
164
-82.48
32.63
50
A
PRO
174
-63.76
-149.54
50
A
THR
188
-144.16
-72.50
refinement
AMBER
MYB PROTO-ONCOGENE PROTEIN
MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1
Y
N
A
GLU
149
A
GLU
8
HELX_P
A
LEU
162
A
LEU
21
1
H1
14
A
TRP
166
A
TRP
25
HELX_P
A
LEU
172
A
LEU
31
1
H2
7
A
ASP
178
A
ASP
37
HELX_P
A
SER
187
A
SER
46
1
H3
10
covale
1.338
A
VAL
193
A
C
VAL
52
1_555
A
NH2
194
A
N
NH2
53
1_555
DNA BINDING PROTEIN
PROTOONCOGENE PRODUCT, DNA BINDING PROTEIN
MYB_MOUSE
UNP
1
1
P06876
MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQH
RWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK
RLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQEPSKASQTPVATSFQKNNHLMGFGHASPPSQLSPSGQSSV
NSEYPYYHIAEAQNISSHVPYPVALHVNIVNVPQPAAAAIQRHYNDEDPEKEKRIKELELLLMSTENELKGQQALPTQNH
TCSYPGWHSTSIVDQTRPHGDSAPVSCLGEHHATPSLPADPGSLPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID
SFLNTSSNHESSGLDAPTLPSTPLIGHKLTPCRDQTVKTQKENSIFRTPAIKRSILESSPRTPTPFKHALAAQEIKYGPL
KMLPQTPSHAVEDLQDVIKRESDESGIVAEFQESGPPLLKKIKQEVESPTEKSGNFFCSNHWAENSLSTQLFSQASPVAD
APNILTSSVLMTPVSEDEDNVLKAFTVPKNRPLVGPLQPCSGAWEPASCGKTEDQMTASGPARKYVNAFSARTLVM
142
193
1MBK
142
193
P06876
A
1
1
52
BINDING SITE FOR RESIDUE NH2 A 194
Software
3
A
ARG
191
A
ARG
50
3
1_555
A
LYS
192
A
LYS
51
3
1_555
A
VAL
193
A
VAL
52
3
1_555
1
P 1