1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Ogata, K. Morikawa, S. Nakamura, H. Hojo, H. Yoshimura, S. Zhang, R. Aimoto, S. Ametani, Y. Hirata, Z. Sarai, A. Ishii, S. Nishimura, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat.Struct.Biol. NSBIEW 2024 1072-8368 2 309 320 10.1038/nsb0495-309 7796266 Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb. 1995 US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 79 639 Solution Structure of a Specific DNA Complex of the Myb DNA-Binding Domain with Cooperative Recognition Helices 1994 US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 89 6428 Solution Structure of a DNA-Binding Unit of Myb: A Helix-Turn-Helix-Related Motif with Conserved Tryptophans Forming a Hydrophobic Core 1992 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 GENE C-MYB, NMR, 50 STRUCTURES; ENGINEERED 6259.194 MYB PROTO-ONCOGENE PROTEIN 1 nat polymer no yes VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV(NH2) VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVX A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus sample 10090 Mus musculus repository Initial release Version format compliance Version format compliance Database references 1 0 1995-07-31 1 1 2008-03-24 1 2 2011-07-13 1 3 2012-02-29 Y 1995-05-19 REL REL 50 6.8 290 K 6.8 300 K A TOTAL OF 50 STRUCTURES WERE CALCULATED. THE COORDINATES OF THE RESTRAINED MINIMIZED AVERAGED STRUCTURE WERE OBTAINED BY AVERAGING THE COORDINATES OF THE INDIVIDUAL STRUCTURES, AND THEN BY SUBJECTING THE RESULTING COORDINATES TO THE RESTRAINED ENERGY MINIMIZATION BY PRESTO. NAKAI,KIDERA,NAKAMURA refinement EMBOSS MORIKAMI,NAKAI,KIDERA,SAITO,NAKAMURA refinement PRESTO VAL 142 n 1 VAL 142 A LYS 143 n 2 LYS 143 A LYS 144 n 3 LYS 144 A THR 145 n 4 THR 145 A SER 146 n 5 SER 146 A TRP 147 n 6 TRP 147 A THR 148 n 7 THR 148 A GLU 149 n 8 GLU 149 A GLU 150 n 9 GLU 150 A GLU 151 n 10 GLU 151 A ASP 152 n 11 ASP 152 A ARG 153 n 12 ARG 153 A ILE 154 n 13 ILE 154 A ILE 155 n 14 ILE 155 A TYR 156 n 15 TYR 156 A GLN 157 n 16 GLN 157 A ALA 158 n 17 ALA 158 A HIS 159 n 18 HIS 159 A LYS 160 n 19 LYS 160 A ARG 161 n 20 ARG 161 A LEU 162 n 21 LEU 162 A GLY 163 n 22 GLY 163 A ASN 164 n 23 ASN 164 A ARG 165 n 24 ARG 165 A TRP 166 n 25 TRP 166 A ALA 167 n 26 ALA 167 A GLU 168 n 27 GLU 168 A ILE 169 n 28 ILE 169 A ALA 170 n 29 ALA 170 A LYS 171 n 30 LYS 171 A LEU 172 n 31 LEU 172 A LEU 173 n 32 LEU 173 A PRO 174 n 33 PRO 174 A GLY 175 n 34 GLY 175 A ARG 176 n 35 ARG 176 A THR 177 n 36 THR 177 A ASP 178 n 37 ASP 178 A ASN 179 n 38 ASN 179 A ALA 180 n 39 ALA 180 A ILE 181 n 40 ILE 181 A LYS 182 n 41 LYS 182 A ASN 183 n 42 ASN 183 A HIS 184 n 43 HIS 184 A TRP 185 n 44 TRP 185 A ASN 186 n 45 ASN 186 A SER 187 n 46 SER 187 A THR 188 n 47 THR 188 A MET 189 n 48 MET 189 A ARG 190 n 49 ARG 190 A ARG 191 n 50 ARG 191 A LYS 192 n 51 LYS 192 A VAL 193 n 52 VAL 193 A NH2 194 n 53 NH2 194 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 11 A ARG 153 0.077 SIDE CHAIN 17 A ARG 153 0.076 SIDE CHAIN 23 A ARG 153 0.085 SIDE CHAIN 33 A ARG 165 0.093 SIDE CHAIN 37 A ARG 176 0.078 SIDE CHAIN 49 A ARG 153 0.093 SIDE CHAIN 49 A ARG 165 0.098 SIDE CHAIN 1 A LYS 144 -163.84 -43.53 1 A ASN 164 -79.82 42.46 1 A PRO 174 -70.09 -93.51 1 A SER 187 -173.83 -53.29 2 A LYS 143 40.43 -142.04 2 A LYS 144 63.18 -170.23 2 A THR 145 -152.49 -42.72 2 A SER 146 77.02 113.51 2 A TRP 147 60.13 -174.08 2 A LEU 162 -97.07 -63.39 2 A MET 189 -100.15 -149.08 2 A ARG 190 177.57 -53.26 3 A LYS 144 58.34 79.95 3 A MET 189 -82.96 -89.48 3 A ARG 190 76.91 -55.83 4 A LYS 143 -154.90 -59.74 4 A LYS 144 60.61 -171.01 4 A SER 146 -170.76 72.20 4 A TRP 147 63.33 169.56 4 A PRO 174 -62.45 -162.31 4 A THR 177 71.89 148.77 4 A ASN 186 -79.14 49.05 4 A SER 187 -169.03 -61.35 4 A MET 189 -85.27 -104.54 4 A ARG 190 37.97 39.91 4 A ARG 191 -148.72 47.79 4 A LYS 192 -131.87 -61.20 5 A THR 145 -161.98 52.77 5 A SER 146 -80.33 44.63 5 A TRP 147 56.68 -174.94 5 A ASN 164 -78.10 39.94 5 A THR 188 -144.56 -72.77 5 A MET 189 -90.08 38.46 5 A LYS 192 73.95 -53.95 6 A LYS 144 -106.59 -67.69 6 A THR 145 -145.32 27.34 6 A TRP 147 62.04 102.96 6 A ARG 176 -138.09 -50.84 6 A THR 177 65.94 169.90 6 A SER 187 -173.02 -56.86 6 A MET 189 -118.28 53.49 7 A ASN 164 -83.35 34.23 7 A MET 189 -102.43 52.53 7 A ARG 191 68.18 -75.06 7 A LYS 192 49.99 76.12 8 A ASN 164 -83.08 30.58 8 A THR 177 68.77 154.92 8 A MET 189 -91.54 -118.67 8 A ARG 191 -131.22 -118.17 9 A LYS 143 66.13 -70.75 9 A LYS 144 77.04 131.91 9 A TRP 147 69.47 105.17 9 A LEU 162 -134.06 -53.53 9 A ASN 186 -77.47 29.38 9 A SER 187 -150.82 -57.75 10 A SER 146 -68.44 -176.99 10 A TRP 147 64.01 168.21 10 A LEU 162 -90.36 -60.64 10 A ASN 164 -81.90 38.10 10 A ASN 186 -79.83 35.61 10 A SER 187 -164.36 -53.89 11 A LYS 144 -95.84 -143.37 11 A TRP 147 63.31 174.82 11 A ASN 164 -79.17 41.34 11 A PRO 174 -70.78 -93.02 11 A SER 187 -160.29 -47.96 11 A THR 188 -145.89 16.05 11 A MET 189 -146.31 26.93 12 A LYS 144 43.24 -149.99 12 A TRP 147 69.63 146.16 12 A ASN 164 -85.60 34.28 12 A PRO 174 -62.50 -157.40 12 A SER 187 -168.73 -59.70 12 A MET 189 -98.11 -99.84 12 A ARG 190 65.51 -172.25 12 A ARG 191 73.90 -47.18 12 A LYS 192 77.06 -60.30 13 A THR 145 64.65 -173.44 13 A SER 146 63.89 -145.98 13 A ASN 164 -81.41 37.43 13 A THR 188 -143.25 -65.11 13 A MET 189 -88.01 49.53 14 A LYS 144 -147.89 -57.40 14 A THR 145 45.48 -105.40 14 A SER 146 64.76 -176.44 14 A TRP 147 60.74 177.90 14 A LEU 162 -97.50 -65.96 14 A ASN 164 -81.71 36.72 14 A PRO 174 -70.76 -93.67 14 A THR 188 -153.37 -51.05 14 A MET 189 -79.03 38.04 15 A THR 145 73.79 151.38 15 A THR 188 -143.75 -63.43 15 A MET 189 -107.82 62.58 15 A ARG 190 -67.51 97.12 15 A ARG 191 63.02 -174.68 16 A LYS 143 -149.36 41.69 16 A TRP 147 64.98 163.99 16 A LEU 162 -96.41 -64.42 16 A ASN 186 -89.98 45.47 16 A SER 187 -166.43 -60.52 16 A MET 189 -89.95 -86.53 16 A ARG 190 59.40 177.89 17 A LYS 143 70.50 159.96 17 A ASN 164 -81.40 40.14 17 A SER 187 -162.36 -51.50 17 A MET 189 -144.29 -72.71 17 A ARG 190 52.34 -122.54 17 A ARG 191 51.14 72.77 18 A PRO 174 -66.59 -77.44 18 A SER 187 -167.79 -53.92 19 A SER 146 60.23 -173.76 19 A TRP 147 61.24 170.90 19 A LEU 162 -99.92 -64.45 19 A ASN 164 -82.12 30.72 19 A SER 187 -165.61 -62.02 19 A MET 189 -105.06 51.15 20 A LYS 143 -79.07 -72.52 20 A THR 145 58.94 -149.43 20 A SER 146 -168.64 100.22 20 A LEU 162 -93.07 -65.24 20 A ASN 164 -80.43 37.08 20 A SER 187 -170.72 -52.34 20 A MET 189 -110.19 52.86 20 A ARG 191 66.68 -171.36 21 A LYS 144 -164.93 -69.33 21 A THR 145 -153.25 -62.44 21 A TRP 147 62.60 172.30 21 A LEU 162 -94.56 -64.57 21 A ASN 164 -80.13 39.17 21 A GLU 168 -99.98 -60.57 21 A PRO 174 -62.22 -155.91 21 A ASN 186 -79.52 49.25 21 A SER 187 -172.48 -56.62 21 A MET 189 -117.62 56.88 22 A LYS 143 56.73 73.56 22 A SER 146 -79.15 -167.44 22 A ASN 164 -80.08 34.89 22 A MET 189 -87.09 -109.03 22 A ARG 190 71.20 171.07 22 A ARG 191 74.12 -62.61 22 A LYS 192 76.96 106.80 23 A LYS 143 69.86 126.34 23 A ASN 164 -82.52 35.38 23 A SER 187 -170.72 -61.18 24 A LYS 144 71.73 -67.09 24 A ASN 164 -77.72 39.14 24 A PRO 174 -71.24 -90.34 24 A SER 187 -173.48 -51.00 24 A ARG 190 163.82 156.30 24 A ARG 191 74.67 -10.88 24 A LYS 192 70.05 -66.77 25 A THR 145 -85.20 -121.32 25 A TRP 147 64.92 163.33 25 A ASN 164 -81.31 38.80 25 A ARG 176 -131.41 -43.99 25 A THR 177 67.00 164.45 25 A ASN 186 -79.94 49.38 25 A SER 187 -171.30 -60.10 25 A MET 189 -74.80 -98.68 25 A ARG 190 54.21 -166.68 26 A THR 145 -153.36 -50.38 26 A TRP 147 64.00 168.43 26 A LEU 162 -97.41 -70.05 26 A ASN 164 -81.68 32.67 26 A THR 188 -123.02 -52.06 26 A ARG 190 55.70 -141.52 26 A ARG 191 68.48 -67.05 27 A ASN 164 -81.79 38.02 27 A SER 187 -167.25 -59.31 27 A MET 189 -76.18 -80.56 27 A ARG 191 -118.34 66.74 28 A SER 146 -162.80 -162.15 28 A ASN 164 -79.21 43.55 28 A MET 189 -87.37 -104.91 28 A ARG 191 -140.61 50.93 29 A LYS 143 -77.76 -95.43 29 A LYS 144 74.04 -52.98 29 A ASN 164 -83.05 33.51 29 A MET 189 -97.57 -84.39 30 A TRP 147 64.25 165.21 30 A PRO 174 -70.68 -91.76 31 A THR 145 -83.55 -154.03 31 A SER 146 71.44 115.77 31 A TRP 147 60.96 -178.61 31 A LEU 162 -108.50 -65.13 31 A ASN 164 -86.99 34.25 31 A ASN 186 -78.69 44.07 31 A SER 187 -155.83 -56.40 31 A MET 189 -90.33 -63.96 31 A ARG 190 67.87 -157.37 31 A ARG 191 50.71 72.32 32 A LYS 144 59.29 77.02 32 A THR 145 -57.97 104.37 32 A ASN 164 -79.82 28.92 32 A SER 187 -172.75 -63.37 32 A MET 189 -88.03 -122.50 32 A ARG 190 74.31 -62.67 33 A TRP 147 61.26 179.94 33 A LEU 162 -97.39 -62.72 33 A MET 189 -96.84 -92.58 34 A LYS 143 -167.72 -62.40 34 A THR 188 -130.40 -41.57 34 A MET 189 -83.44 48.21 34 A ARG 191 -93.50 -63.25 34 A LYS 192 38.02 -131.31 35 A THR 145 39.62 -135.29 35 A SER 146 61.24 88.35 35 A TRP 147 69.13 144.19 35 A LEU 162 -102.77 -68.05 35 A PRO 174 -70.57 -93.50 35 A MET 189 -83.86 -82.54 35 A ARG 190 76.75 -56.71 36 A LYS 143 70.09 167.78 36 A ASN 164 -91.45 34.51 36 A PRO 174 -63.23 -154.09 36 A MET 189 -108.48 60.83 37 A LYS 143 -160.76 -56.78 37 A LYS 144 61.86 90.61 37 A TRP 147 41.26 83.04 37 A ASN 164 -78.34 42.55 37 A THR 188 -92.20 -67.68 37 A MET 189 -87.99 -97.32 37 A ARG 190 77.87 -42.58 37 A LYS 192 68.35 -91.97 38 A THR 145 -69.82 77.31 38 A TRP 147 60.73 170.87 38 A ASN 164 -80.84 41.26 38 A MET 189 -74.57 -75.57 38 A ARG 190 73.52 -71.59 39 A TRP 147 54.35 93.89 39 A LEU 162 -96.72 -61.72 39 A ASN 164 -85.22 30.06 39 A THR 188 -152.61 -66.91 39 A MET 189 -86.71 45.64 39 A ARG 190 -88.63 -122.46 39 A ARG 191 54.87 19.33 40 A THR 145 64.65 -173.44 40 A SER 146 63.89 -145.98 40 A ASN 164 -81.41 37.43 40 A THR 188 -143.25 -65.11 40 A MET 189 -88.01 49.53 41 A SER 146 59.52 90.98 41 A TRP 147 63.30 178.30 41 A LEU 162 -101.57 -66.23 41 A ASN 164 -83.49 38.46 41 A SER 187 -171.99 -55.78 41 A MET 189 -114.12 -73.46 42 A LEU 162 -90.54 -60.90 42 A ASN 164 -87.03 30.35 42 A MET 189 -89.76 -157.82 42 A ARG 190 175.00 76.90 43 A LYS 144 -155.41 -67.32 43 A THR 145 74.01 -55.14 43 A SER 146 63.87 -156.42 43 A TRP 147 58.07 -169.36 43 A ASN 164 -81.27 35.36 43 A SER 187 -156.38 -60.31 43 A THR 188 -140.22 51.15 43 A MET 189 -158.41 -36.28 44 A LYS 144 63.00 94.62 44 A THR 145 74.95 161.37 44 A SER 146 74.49 119.46 44 A TRP 147 65.89 159.71 44 A LEU 162 -92.11 -60.11 44 A ASN 164 -82.25 30.78 44 A THR 188 -106.30 -70.25 44 A MET 189 -86.80 -102.88 44 A LYS 192 71.12 -70.69 45 A LYS 143 -153.18 61.94 45 A LYS 144 62.18 -178.75 45 A SER 146 62.95 -162.23 45 A ARG 176 -136.52 -43.90 45 A THR 177 68.28 165.90 45 A SER 187 -167.09 -59.49 45 A MET 189 -98.95 -86.48 45 A ARG 190 57.11 -150.45 45 A ARG 191 71.14 -65.31 46 A LYS 143 -153.90 -27.38 46 A LYS 144 56.89 -116.44 46 A SER 146 63.21 84.02 46 A ASN 164 -78.84 39.78 46 A MET 189 -87.72 -85.60 47 A LYS 143 72.32 147.72 47 A THR 145 -153.35 41.84 47 A TRP 147 61.33 174.25 47 A LEU 162 -98.30 -60.11 47 A PRO 174 -68.40 -86.70 47 A ASN 186 -78.51 46.62 47 A SER 187 -168.18 -59.57 47 A MET 189 -91.17 -117.67 47 A LYS 192 66.12 -77.58 48 A LYS 143 -158.09 -32.03 48 A THR 145 -153.43 83.63 48 A SER 146 -163.68 -168.69 48 A TRP 147 51.91 83.51 48 A LEU 162 -103.74 -63.76 48 A ASN 164 -82.20 34.08 48 A PRO 174 -71.59 -94.14 48 A THR 188 -131.31 -56.86 48 A LYS 192 175.80 63.05 49 A LYS 143 -108.05 -72.38 49 A TRP 147 58.74 178.78 49 A LEU 162 -109.33 -61.30 49 A ASN 164 -82.59 32.67 49 A THR 188 -97.10 -65.97 49 A MET 189 -102.98 64.51 49 A ARG 191 61.25 -172.19 50 A LYS 143 -153.78 -55.19 50 A LYS 144 -152.49 37.11 50 A SER 146 52.51 -170.70 50 A LEU 162 -141.26 -60.08 50 A ASN 164 -82.48 32.63 50 A PRO 174 -63.76 -149.54 50 A THR 188 -144.16 -72.50 refinement AMBER MYB PROTO-ONCOGENE PROTEIN MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3 1 Y N A GLU 149 A GLU 8 HELX_P A LEU 162 A LEU 21 1 H1 14 A TRP 166 A TRP 25 HELX_P A LEU 172 A LEU 31 1 H2 7 A ASP 178 A ASP 37 HELX_P A SER 187 A SER 46 1 H3 10 covale 1.338 A VAL 193 A C VAL 52 1_555 A NH2 194 A N NH2 53 1_555 DNA BINDING PROTEIN PROTOONCOGENE PRODUCT, DNA BINDING PROTEIN MYB_MOUSE UNP 1 1 P06876 MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQH RWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK RLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQEPSKASQTPVATSFQKNNHLMGFGHASPPSQLSPSGQSSV NSEYPYYHIAEAQNISSHVPYPVALHVNIVNVPQPAAAAIQRHYNDEDPEKEKRIKELELLLMSTENELKGQQALPTQNH TCSYPGWHSTSIVDQTRPHGDSAPVSCLGEHHATPSLPADPGSLPEESASPARCMIVHQGTILDNVKNLLEFAETLQFID SFLNTSSNHESSGLDAPTLPSTPLIGHKLTPCRDQTVKTQKENSIFRTPAIKRSILESSPRTPTPFKHALAAQEIKYGPL KMLPQTPSHAVEDLQDVIKRESDESGIVAEFQESGPPLLKKIKQEVESPTEKSGNFFCSNHWAENSLSTQLFSQASPVAD APNILTSSVLMTPVSEDEDNVLKAFTVPKNRPLVGPLQPCSGAWEPASCGKTEDQMTASGPARKYVNAFSARTLVM 142 193 1MBK 142 193 P06876 A 1 1 52 BINDING SITE FOR RESIDUE NH2 A 194 Software 3 A ARG 191 A ARG 50 3 1_555 A LYS 192 A LYS 51 3 1_555 A VAL 193 A VAL 52 3 1_555 1 P 1