0.014948 0.008630 0.000000 0.000000 0.017260 0.000000 0.000000 0.000000 0.008711 0.00000 0.00000 0.00000 May, J.J. Kessler, N. Marahiel, M.A. Stubbs, M.T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 3 90.00 90.00 120.00 66.900 66.900 114.800 C3 H7 N O2 89.093 y ALANINE L-peptide linking C10 H14 N5 O7 P 347.221 ADENOSINE MONOPHOSPHATE non-polymer C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C7 H6 O4 154.120 2,3-DIHYDROXY-BENZOIC ACID non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 99 12120 12125 10.1073/pnas.182156699 12221282 Crystal structure of DhbE, an archetype for aryl acid activating domains of modular nonribosomal peptide synthetases. 2002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 2001-03-23 SINGLE WAVELENGTH M x-ray 1 1.0 60363.301 2,3-dihydroxybenzoate-AMP ligase 6.3.2.- 1 man polymer 347.221 ADENOSINE MONOPHOSPHATE 1 syn non-polymer 154.120 2,3-DIHYDROXY-BENZOIC ACID 1 syn non-polymer DHBE, Dihydroxybenzoic acid-activating enzyme no yes (MSE)LKGFTPWPDELAETYRKNGCWAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKD RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIV AGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALP(MSE) AHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLA(MSE)VW(MSE)DAASSRRDDLSSLQVLQ VGGAKFSAEAARRVKAVFGCTLQQVFG(MSE)AEGLVNYTRLDDPEEIIVNTQGKP(MSE)SPYDESRVWDDHDRDVKPG ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVH DAA(MSE)VS(MSE)PDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREA ISEKLLAGFKK MLKGFTPWPDELAETYRKNGCWAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVV QLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA EEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSS PGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKA VFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNA ASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD EAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAGFKK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Bacillus M15 ATCC 21332 Escherichia sample 1423 Bacillus subtilis 562 Escherichia coli 2.46 49.92 software repository Initial release Version format compliance Version format compliance Refinement description 1 0 2002-09-11 1 1 2008-04-28 1 2 2011-07-13 1 3 2017-10-11 Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp and Phenylalanine Crystal structure of DhbE in complex with DHB-adenylate Crystal structure of DhbE in absence of substrate SEQUENCE Author states the sequence has recently been deposited at NCBI with the acquisition number bankit484943. RCSB Y RCSB 2002-08-07 REL AMP ADENOSINE MONOPHOSPHATE DBH 2,3-DIHYDROXY-BENZOIC ACID AMP 600 2 AMP AMP 600 A DBH 601 3 DBH DBH 601 A MSE 1 n 1 MSE 1 A LEU 2 n 2 LEU 2 A LYS 3 n 3 LYS 3 A GLY 4 n 4 GLY 4 A PHE 5 n 5 PHE 5 A THR 6 n 6 THR 6 A PRO 7 n 7 PRO 7 A TRP 8 n 8 TRP 8 A PRO 9 n 9 PRO 9 A ASP 10 n 10 ASP 10 A GLU 11 n 11 GLU 11 A LEU 12 n 12 LEU 12 A ALA 13 n 13 ALA 13 A GLU 14 n 14 GLU 14 A THR 15 n 15 THR 15 A TYR 16 n 16 TYR 16 A ARG 17 n 17 ARG 17 A LYS 18 n 18 LYS 18 A ASN 19 n 19 ASN 19 A GLY 20 n 20 GLY 20 A CYS 21 n 21 CYS 21 A TRP 22 n 22 TRP 22 A ALA 23 n 23 ALA 23 A GLY 24 n 24 GLY 24 A GLU 25 n 25 GLU 25 A THR 26 n 26 THR 26 A PHE 27 n 27 PHE 27 A GLY 28 n 28 GLY 28 A ASP 29 n 29 ASP 29 A LEU 30 n 30 LEU 30 A LEU 31 n 31 LEU 31 A ARG 32 n 32 ARG 32 A ASP 33 n 33 ASP 33 A ARG 34 n 34 ARG 34 A ALA 35 n 35 ALA 35 A ALA 36 n 36 ALA 36 A LYS 37 n 37 LYS 37 A TYR 38 n 38 TYR 38 A GLY 39 n 39 GLY 39 A ASP 40 n 40 ASP 40 A ARG 41 n 41 ARG 41 A ILE 42 n 42 ILE 42 A ALA 43 n 43 ALA 43 A ILE 44 n 44 ILE 44 A THR 45 n 45 THR 45 A CYS 46 n 46 CYS 46 A GLY 47 n 47 GLY 47 A ASN 48 n 48 ASN 48 A THR 49 n 49 THR 49 A HIS 50 n 50 HIS 50 A TRP 51 n 51 TRP 51 A SER 52 n 52 SER 52 A TYR 53 n 53 TYR 53 A ARG 54 n 54 ARG 54 A GLU 55 n 55 GLU 55 A LEU 56 n 56 LEU 56 A ASP 57 n 57 ASP 57 A THR 58 n 58 THR 58 A ARG 59 n 59 ARG 59 A ALA 60 n 60 ALA 60 A ASP 61 n 61 ASP 61 A ARG 62 n 62 ARG 62 A LEU 63 n 63 LEU 63 A ALA 64 n 64 ALA 64 A ALA 65 n 65 ALA 65 A GLY 66 n 66 GLY 66 A PHE 67 n 67 PHE 67 A GLN 68 n 68 GLN 68 A LYS 69 n 69 LYS 69 A LEU 70 n 70 LEU 70 A GLY 71 n 71 GLY 71 A ILE 72 n 72 ILE 72 A GLN 73 n 73 GLN 73 A GLN 74 n 74 GLN 74 A LYS 75 n 75 LYS 75 A ASP 76 n 76 ASP 76 A ARG 77 n 77 ARG 77 A VAL 78 n 78 VAL 78 A VAL 79 n 79 VAL 79 A VAL 80 n 80 VAL 80 A GLN 81 n 81 GLN 81 A LEU 82 n 82 LEU 82 A PRO 83 n 83 PRO 83 A ASN 84 n 84 ASN 84 A ILE 85 n 85 ILE 85 A LYS 86 n 86 LYS 86 A GLU 87 n 87 GLU 87 A PHE 88 n 88 PHE 88 A PHE 89 n 89 PHE 89 A GLU 90 n 90 GLU 90 A VAL 91 n 91 VAL 91 A ILE 92 n 92 ILE 92 A PHE 93 n 93 PHE 93 A ALA 94 n 94 ALA 94 A LEU 95 n 95 LEU 95 A PHE 96 n 96 PHE 96 A ARG 97 n 97 ARG 97 A LEU 98 n 98 LEU 98 A GLY 99 n 99 GLY 99 A ALA 100 n 100 ALA 100 A LEU 101 n 101 LEU 101 A PRO 102 n 102 PRO 102 A VAL 103 n 103 VAL 103 A PHE 104 n 104 PHE 104 A ALA 105 n 105 ALA 105 A LEU 106 n 106 LEU 106 A PRO 107 n 107 PRO 107 A SER 108 n 108 SER 108 A HIS 109 n 109 HIS 109 A ARG 110 n 110 ARG 110 A SER 111 n 111 SER 111 A SER 112 n 112 SER 112 A GLU 113 n 113 GLU 113 A ILE 114 n 114 ILE 114 A THR 115 n 115 THR 115 A TYR 116 n 116 TYR 116 A PHE 117 n 117 PHE 117 A CYS 118 n 118 CYS 118 A GLU 119 n 119 GLU 119 A PHE 120 n 120 PHE 120 A ALA 121 n 121 ALA 121 A GLU 122 n 122 GLU 122 A ALA 123 n 123 ALA 123 A ALA 124 n 124 ALA 124 A ALA 125 n 125 ALA 125 A TYR 126 n 126 TYR 126 A ILE 127 n 127 ILE 127 A ILE 128 n 128 ILE 128 A PRO 129 n 129 PRO 129 A ASP 130 n 130 ASP 130 A ALA 131 n 131 ALA 131 A TYR 132 n 132 TYR 132 A SER 133 n 133 SER 133 A GLY 134 n 134 GLY 134 A PHE 135 n 135 PHE 135 A ASP 136 n 136 ASP 136 A TYR 137 n 137 TYR 137 A ARG 138 n 138 ARG 138 A SER 139 n 139 SER 139 A LEU 140 n 140 LEU 140 A ALA 141 n 141 ALA 141 A ARG 142 n 142 ARG 142 A GLN 143 n 143 GLN 143 A VAL 144 n 144 VAL 144 A GLN 145 n 145 GLN 145 A SER 146 n 146 SER 146 A LYS 147 n 147 LYS 147 A LEU 148 n 148 LEU 148 A PRO 149 n 149 PRO 149 A THR 150 n 150 THR 150 A LEU 151 n 151 LEU 151 A LYS 152 n 152 LYS 152 A ASN 153 n 153 ASN 153 A ILE 154 n 154 ILE 154 A ILE 155 n 155 ILE 155 A VAL 156 n 156 VAL 156 A ALA 157 n 157 ALA 157 A GLY 158 n 158 GLY 158 A GLU 159 n 159 GLU 159 A ALA 160 n 160 ALA 160 A GLU 161 n 161 GLU 161 A GLU 162 n 162 GLU 162 A PHE 163 n 163 PHE 163 A LEU 164 n 164 LEU 164 A PRO 165 n 165 PRO 165 A LEU 166 n 166 LEU 166 A GLU 167 n 167 GLU 167 A ASP 168 n 168 ASP 168 A LEU 169 n 169 LEU 169 A HIS 170 n 170 HIS 170 A THR 171 n 171 THR 171 A GLU 172 n 172 GLU 172 A PRO 173 n 173 PRO 173 A VAL 174 n 174 VAL 174 A LYS 175 n 175 LYS 175 A LEU 176 n 176 LEU 176 A PRO 177 n 177 PRO 177 A GLU 178 n 178 GLU 178 A VAL 179 n 179 VAL 179 A LYS 180 n 180 LYS 180 A SER 181 n 181 SER 181 A SER 182 n 182 SER 182 A ASP 183 n 183 ASP 183 A VAL 184 n 184 VAL 184 A ALA 185 n 185 ALA 185 A PHE 186 n 186 PHE 186 A LEU 187 n 187 LEU 187 A GLN 188 n 188 GLN 188 A LEU 189 n 189 LEU 189 A SER 190 n 190 SER 190 A GLY 191 n 191 GLY 191 A GLY 192 n 192 GLY 192 A SER 193 n 193 SER 193 A THR 194 n 194 THR 194 A GLY 195 n 195 GLY 195 A LEU 196 n 196 LEU 196 A SER 197 n 197 SER 197 A LYS 198 n 198 LYS 198 A LEU 199 n 199 LEU 199 A ILE 200 n 200 ILE 200 A PRO 201 n 201 PRO 201 A ARG 202 n 202 ARG 202 A THR 203 n 203 THR 203 A HIS 204 n 204 HIS 204 A ASP 205 n 205 ASP 205 A ASP 206 n 206 ASP 206 A TYR 207 n 207 TYR 207 A ILE 208 n 208 ILE 208 A TYR 209 n 209 TYR 209 A SER 210 n 210 SER 210 A LEU 211 n 211 LEU 211 A LYS 212 n 212 LYS 212 A ARG 213 n 213 ARG 213 A SER 214 n 214 SER 214 A VAL 215 n 215 VAL 215 A GLU 216 n 216 GLU 216 A VAL 217 n 217 VAL 217 A CYS 218 n 218 CYS 218 A TRP 219 n 219 TRP 219 A LEU 220 n 220 LEU 220 A ASP 221 n 221 ASP 221 A HIS 222 n 222 HIS 222 A SER 223 n 223 SER 223 A THR 224 n 224 THR 224 A VAL 225 n 225 VAL 225 A TYR 226 n 226 TYR 226 A LEU 227 n 227 LEU 227 A ALA 228 n 228 ALA 228 A ALA 229 n 229 ALA 229 A LEU 230 n 230 LEU 230 A PRO 231 n 231 PRO 231 A MSE 232 n 232 MSE 232 A ALA 233 n 233 ALA 233 A HIS 234 n 234 HIS 234 A ASN 235 n 235 ASN 235 A TYR 236 n 236 TYR 236 A PRO 237 n 237 PRO 237 A LEU 238 n 238 LEU 238 A SER 239 n 239 SER 239 A SER 240 n 240 SER 240 A PRO 241 n 241 PRO 241 A GLY 242 n 242 GLY 242 A VAL 243 n 243 VAL 243 A LEU 244 n 244 LEU 244 A GLY 245 n 245 GLY 245 A VAL 246 n 246 VAL 246 A LEU 247 n 247 LEU 247 A TYR 248 n 248 TYR 248 A ALA 249 n 249 ALA 249 A GLY 250 n 250 GLY 250 A GLY 251 n 251 GLY 251 A ARG 252 n 252 ARG 252 A VAL 253 n 253 VAL 253 A VAL 254 n 254 VAL 254 A LEU 255 n 255 LEU 255 A SER 256 n 256 SER 256 A PRO 257 n 257 PRO 257 A SER 258 n 258 SER 258 A PRO 259 n 259 PRO 259 A SER 260 n 260 SER 260 A PRO 261 n 261 PRO 261 A ASP 262 n 262 ASP 262 A ASP 263 n 263 ASP 263 A ALA 264 n 264 ALA 264 A PHE 265 n 265 PHE 265 A PRO 266 n 266 PRO 266 A LEU 267 n 267 LEU 267 A ILE 268 n 268 ILE 268 A GLU 269 n 269 GLU 269 A ARG 270 n 270 ARG 270 A GLU 271 n 271 GLU 271 A LYS 272 n 272 LYS 272 A VAL 273 n 273 VAL 273 A THR 274 n 274 THR 274 A ILE 275 n 275 ILE 275 A THR 276 n 276 THR 276 A ALA 277 n 277 ALA 277 A LEU 278 n 278 LEU 278 A VAL 279 n 279 VAL 279 A PRO 280 n 280 PRO 280 A PRO 281 n 281 PRO 281 A LEU 282 n 282 LEU 282 A ALA 283 n 283 ALA 283 A MSE 284 n 284 MSE 284 A VAL 285 n 285 VAL 285 A TRP 286 n 286 TRP 286 A MSE 287 n 287 MSE 287 A ASP 288 n 288 ASP 288 A ALA 289 n 289 ALA 289 A ALA 290 n 290 ALA 290 A SER 291 n 291 SER 291 A SER 292 n 292 SER 292 A ARG 293 n 293 ARG 293 A ARG 294 n 294 ARG 294 A ASP 295 n 295 ASP 295 A ASP 296 n 296 ASP 296 A LEU 297 n 297 LEU 297 A SER 298 n 298 SER 298 A SER 299 n 299 SER 299 A LEU 300 n 300 LEU 300 A GLN 301 n 301 GLN 301 A VAL 302 n 302 VAL 302 A LEU 303 n 303 LEU 303 A GLN 304 n 304 GLN 304 A VAL 305 n 305 VAL 305 A GLY 306 n 306 GLY 306 A GLY 307 n 307 GLY 307 A ALA 308 n 308 ALA 308 A LYS 309 n 309 LYS 309 A PHE 310 n 310 PHE 310 A SER 311 n 311 SER 311 A ALA 312 n 312 ALA 312 A GLU 313 n 313 GLU 313 A ALA 314 n 314 ALA 314 A ALA 315 n 315 ALA 315 A ARG 316 n 316 ARG 316 A ARG 317 n 317 ARG 317 A VAL 318 n 318 VAL 318 A LYS 319 n 319 LYS 319 A ALA 320 n 320 ALA 320 A VAL 321 n 321 VAL 321 A PHE 322 n 322 PHE 322 A GLY 323 n 323 GLY 323 A CYS 324 n 324 CYS 324 A THR 325 n 325 THR 325 A LEU 326 n 326 LEU 326 A GLN 327 n 327 GLN 327 A GLN 328 n 328 GLN 328 A VAL 329 n 329 VAL 329 A PHE 330 n 330 PHE 330 A GLY 331 n 331 GLY 331 A MSE 332 n 332 MSE 332 A ALA 333 n 333 ALA 333 A GLU 334 n 334 GLU 334 A GLY 335 n 335 GLY 335 A LEU 336 n 336 LEU 336 A VAL 337 n 337 VAL 337 A ASN 338 n 338 ASN 338 A TYR 339 n 339 TYR 339 A THR 340 n 340 THR 340 A ARG 341 n 341 ARG 341 A LEU 342 n 342 LEU 342 A ASP 343 n 343 ASP 343 A ASP 344 n 344 ASP 344 A PRO 345 n 345 PRO 345 A GLU 346 n 346 GLU 346 A GLU 347 n 347 GLU 347 A ILE 348 n 348 ILE 348 A ILE 349 n 349 ILE 349 A VAL 350 n 350 VAL 350 A ASN 351 n 351 ASN 351 A THR 352 n 352 THR 352 A GLN 353 n 353 GLN 353 A GLY 354 n 354 GLY 354 A LYS 355 n 355 LYS 355 A PRO 356 n 356 PRO 356 A MSE 357 n 357 MSE 357 A SER 358 n 358 SER 358 A PRO 359 n 359 PRO 359 A TYR 360 n 360 TYR 360 A ASP 361 n 361 ASP 361 A GLU 362 n 362 GLU 362 A SER 363 n 363 SER 363 A ARG 364 n 364 ARG 364 A VAL 365 n 365 VAL 365 A TRP 366 n 366 TRP 366 A ASP 367 n 367 ASP 367 A ASP 368 n 368 ASP 368 A HIS 369 n 369 HIS 369 A ASP 370 n 370 ASP 370 A ARG 371 n 371 ARG 371 A ASP 372 n 372 ASP 372 A VAL 373 n 373 VAL 373 A LYS 374 n 374 LYS 374 A PRO 375 n 375 PRO 375 A GLY 376 n 376 GLY 376 A GLU 377 n 377 GLU 377 A THR 378 n 378 THR 378 A GLY 379 n 379 GLY 379 A HIS 380 n 380 HIS 380 A LEU 381 n 381 LEU 381 A LEU 382 n 382 LEU 382 A THR 383 n 383 THR 383 A ARG 384 n 384 ARG 384 A GLY 385 n 385 GLY 385 A PRO 386 n 386 PRO 386 A TYR 387 n 387 TYR 387 A THR 388 n 388 THR 388 A ILE 389 n 389 ILE 389 A ARG 390 n 390 ARG 390 A GLY 391 n 391 GLY 391 A TYR 392 n 392 TYR 392 A TYR 393 n 393 TYR 393 A LYS 394 n 394 LYS 394 A ALA 395 n 395 ALA 395 A GLU 396 n 396 GLU 396 A GLU 397 n 397 GLU 397 A HIS 398 n 398 HIS 398 A ASN 399 n 399 ASN 399 A ALA 400 n 400 ALA 400 A ALA 401 n 401 ALA 401 A SER 402 n 402 SER 402 A PHE 403 n 403 PHE 403 A THR 404 n 404 THR 404 A GLU 405 n 405 GLU 405 A ASP 406 n 406 ASP 406 A GLY 407 n 407 GLY 407 A PHE 408 n 408 PHE 408 A TYR 409 n 409 TYR 409 A ARG 410 n 410 ARG 410 A THR 411 n 411 THR 411 A GLY 412 n 412 GLY 412 A ASP 413 n 413 ASP 413 A ILE 414 n 414 ILE 414 A VAL 415 n 415 VAL 415 A ARG 416 n 416 ARG 416 A LEU 417 n 417 LEU 417 A THR 418 n 418 THR 418 A ARG 419 n 419 ARG 419 A ASP 420 n 420 ASP 420 A GLY 421 n 421 GLY 421 A TYR 422 n 422 TYR 422 A ILE 423 n 423 ILE 423 A VAL 424 n 424 VAL 424 A VAL 425 n 425 VAL 425 A GLU 426 n 426 GLU 426 A GLY 427 n 427 GLY 427 A ARG 428 n 428 ARG 428 A ALA 429 n 429 ALA 429 A LYS 430 n 430 LYS 430 A ASP 431 n 431 ASP 431 A GLN 432 n 432 GLN 432 A ILE 433 n 433 ILE 433 A ASN 434 n 434 ASN 434 A ARG 435 n 435 ARG 435 A GLY 436 n 436 GLY 436 A GLY 437 n 437 GLY 437 A GLU 438 n 438 GLU 438 A LYS 439 n 439 LYS 439 A VAL 440 n 440 VAL 440 A ALA 441 n 441 ALA 441 A ALA 442 n 442 ALA 442 A GLU 443 n 443 GLU 443 A GLU 444 n 444 GLU 444 A VAL 445 n 445 VAL 445 A GLU 446 n 446 GLU 446 A ASN 447 n 447 ASN 447 A HIS 448 n 448 HIS 448 A LEU 449 n 449 LEU 449 A LEU 450 n 450 LEU 450 A ALA 451 n 451 ALA 451 A HIS 452 n 452 HIS 452 A PRO 453 n 453 PRO 453 A ALA 454 n 454 ALA 454 A VAL 455 n 455 VAL 455 A HIS 456 n 456 HIS 456 A ASP 457 n 457 ASP 457 A ALA 458 n 458 ALA 458 A ALA 459 n 459 ALA 459 A MSE 460 n 460 MSE 460 A VAL 461 n 461 VAL 461 A SER 462 n 462 SER 462 A MSE 463 n 463 MSE 463 A PRO 464 n 464 PRO 464 A ASP 465 n 465 ASP 465 A GLN 466 n 466 GLN 466 A PHE 467 n 467 PHE 467 A LEU 468 n 468 LEU 468 A GLY 469 n 469 GLY 469 A GLU 470 n 470 GLU 470 A ARG 471 n 471 ARG 471 A SER 472 n 472 SER 472 A CYS 473 n 473 CYS 473 A VAL 474 n 474 VAL 474 A PHE 475 n 475 PHE 475 A ILE 476 n 476 ILE 476 A ILE 477 n 477 ILE 477 A PRO 478 n 478 PRO 478 A ARG 479 n 479 ARG 479 A ASP 480 n 480 ASP 480 A GLU 481 n 481 GLU 481 A ALA 482 n 482 ALA 482 A PRO 483 n 483 PRO 483 A LYS 484 n 484 LYS 484 A ALA 485 n 485 ALA 485 A ALA 486 n 486 ALA 486 A GLU 487 n 487 GLU 487 A LEU 488 n 488 LEU 488 A LYS 489 n 489 LYS 489 A ALA 490 n 490 ALA 490 A PHE 491 n 491 PHE 491 A LEU 492 n 492 LEU 492 A ARG 493 n 493 ARG 493 A GLU 494 n 494 GLU 494 A ARG 495 n 495 ARG 495 A GLY 496 n 496 GLY 496 A LEU 497 n 497 LEU 497 A ALA 498 n 498 ALA 498 A ALA 499 n 499 ALA 499 A TYR 500 n 500 TYR 500 A LYS 501 n 501 LYS 501 A ILE 502 n 502 ILE 502 A PRO 503 n 503 PRO 503 A ASP 504 n 504 ASP 504 A ARG 505 n 505 ARG 505 A VAL 506 n 506 VAL 506 A GLU 507 n 507 GLU 507 A PHE 508 n 508 PHE 508 A VAL 509 n 509 VAL 509 A GLU 510 n 510 GLU 510 A SER 511 n 511 SER 511 A PHE 512 n 512 PHE 512 A PRO 513 n 513 PRO 513 A GLN 514 n 514 GLN 514 A THR 515 n 515 THR 515 A GLY 516 n 516 GLY 516 A VAL 517 n 517 VAL 517 A GLY 518 n 518 GLY 518 A LYS 519 n 519 LYS 519 A VAL 520 n 520 VAL 520 A SER 521 n 521 SER 521 A LYS 522 n 522 LYS 522 A LYS 523 n 523 LYS 523 A ALA 524 n 524 ALA 524 A LEU 525 n 525 LEU 525 A ARG 526 n 526 ARG 526 A GLU 527 n 527 GLU 527 A ALA 528 n 528 ALA 528 A ILE 529 n 529 ILE 529 A SER 530 n 530 SER 530 A GLU 531 n 531 GLU 531 A LYS 532 n 532 LYS 532 A LEU 533 n 533 LEU 533 A LEU 534 n 534 LEU 534 A ALA 535 n 535 ALA 535 A GLY 536 n 536 GLY 536 A n 537 537 A n 538 538 A n 539 539 A author_defined_assembly 1 monomeric A MSE 1 SELENOMETHIONINE A MSE 1 MET A MSE 232 SELENOMETHIONINE A MSE 232 MET A MSE 284 SELENOMETHIONINE A MSE 284 MET A MSE 287 SELENOMETHIONINE A MSE 287 MET A MSE 332 SELENOMETHIONINE A MSE 332 MET A MSE 357 SELENOMETHIONINE A MSE 357 MET A MSE 460 SELENOMETHIONINE A MSE 460 MET A MSE 463 SELENOMETHIONINE A MSE 463 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TRP 51 A O TRP 51 A N ILE 44 A N ILE 44 A N THR 45 A N THR 45 A O LEU 255 A O LEU 255 A O VAL 254 A O VAL 254 A N TYR 226 A N TYR 226 A N LEU 227 A N LEU 227 A O ILE 275 A O ILE 275 A N LEU 278 A N LEU 278 A O GLN 304 A O GLN 304 A N VAL 305 A N VAL 305 A O GLN 327 A O GLN 327 A N PHE 330 A N PHE 330 A O ASN 338 A O ASN 338 A N TYR 339 A N TYR 339 A O LYS 355 A O LYS 355 A O VAL 103 A O VAL 103 A N VAL 80 A N VAL 80 A N ARG 77 A N ARG 77 A O ALA 124 A O ALA 124 A N ILE 128 A N ILE 128 A O ALA 157 A O ALA 157 A N VAL 156 A N VAL 156 A O LEU 164 A O LEU 164 A N TYR 132 A N TYR 132 A O PHE 135 A O PHE 135 A N GLN 188 A N GLN 188 A O ILE 200 A O ILE 200 A N GLU 362 A N GLU 362 A O ARG 384 A O ARG 384 A N GLY 379 A N GLY 379 A O VAL 415 A O VAL 415 A N ILE 414 A N ILE 414 A O GLY 427 A O GLY 427 A N ILE 433 A N ILE 433 A O VAL 440 A O VAL 440 A N MSE 463 A N MSE 463 A O ARG 471 A O ARG 471 A N VAL 474 A N VAL 474 A O GLU 507 A O GLU 507 1 A PHE 537 A PHE 537 1 Y 1 A LYS 538 A LYS 538 1 Y 1 A LYS 539 A LYS 539 1 Y 1 10.00 1.50 119.30 129.30 A A A C N CA GLY PRO PRO 385 386 386 Y 1 A ASN 19 -78.62 24.24 1 A ASP 33 -56.08 -78.70 1 A TYR 38 -148.55 41.20 1 A ASP 40 -83.24 38.34 1 A ILE 42 -38.91 122.40 1 A THR 58 -52.00 -71.41 1 A ARG 59 -38.65 -38.37 1 A GLN 74 -39.22 143.99 1 A LYS 75 66.56 -9.54 1 A PRO 83 -73.63 -153.11 1 A PHE 120 -58.48 -72.35 1 A ALA 121 -58.46 -0.63 1 A LEU 151 -57.90 98.55 1 A GLU 159 -36.84 99.42 1 A GLU 161 46.86 -125.62 1 A PRO 165 -63.19 98.42 1 A LEU 166 -39.10 -32.91 1 A THR 171 -160.48 -169.62 1 A SER 190 -57.80 170.18 1 A THR 194 169.94 -3.29 1 A SER 240 -119.31 61.13 1 A ALA 249 -84.38 39.33 1 A ARG 270 -56.73 -72.57 1 A ALA 290 -63.26 31.22 1 A SER 291 -157.19 -58.79 1 A SER 292 -76.44 46.14 1 A ARG 293 170.65 60.23 1 A ASP 295 166.43 125.81 1 A ASP 296 -50.46 98.21 1 A GLN 301 -130.06 -53.36 1 A PHE 310 -103.39 74.88 1 A SER 311 -19.42 130.22 1 A VAL 318 -45.82 -75.61 1 A LYS 319 -28.81 -45.65 1 A LEU 336 -20.21 132.46 1 A LEU 342 -59.58 -3.52 1 A ASP 343 -86.59 -85.93 1 A ASP 344 -22.40 152.12 1 A PRO 345 -36.29 167.38 1 A PRO 356 -33.00 146.47 1 A ASP 368 -46.85 -15.78 1 A ASP 372 -39.97 122.25 1 A LYS 394 12.86 65.00 1 A ALA 401 -103.37 44.38 1 A SER 402 -157.14 -18.74 1 A ASP 465 -174.46 115.13 1 A ARG 479 -87.23 43.75 1 A ASP 480 134.17 -94.83 1 A ALA 482 -39.93 111.34 1 A PRO 483 -63.70 -177.89 1 A TYR 500 -68.52 2.08 1 A ALA 528 -42.07 -75.31 0.2880000 0.2320000 2.80 100.00 13234 RANDOM 1 THROUGHOUT 0.00 MAD 2.80 100.00 0 4198 0 0 4198 2.80 100.00 1MD9 13234 0 1 data reduction DENZO data scaling SCALEPACK refinement CNS 2,3-dihydroxybenzoate-AMP ligase (E.C.6.3.2.-) CRYSTAL STRUCTURE OF DhbE IN COMPLEX WITH DHB AND AMP 1 N N 2 N N 3 N N A PRO 9 A PRO 9 HELX_P A ASN 19 A ASN 19 1 1 11 A THR 26 A THR 26 HELX_P A TYR 38 A TYR 38 1 2 13 A TYR 53 A TYR 53 HELX_P A GLY 71 A GLY 71 1 3 19 A LYS 86 A LYS 86 HELX_P A GLY 99 A GLY 99 1 4 14 A ARG 110 A ARG 110 HELX_P A ALA 121 A ALA 121 1 5 12 A TYR 137 A TYR 137 HELX_P A LEU 148 A LEU 148 1 6 12 A GLU 167 A GLU 167 HELX_P A LEU 169 A LEU 169 5 7 3 A HIS 204 A HIS 204 HELX_P A TRP 219 A TRP 219 1 8 16 A HIS 234 A HIS 234 HELX_P A SER 240 A SER 240 1 9 7 A PRO 241 A PRO 241 HELX_P A ALA 249 A ALA 249 1 10 9 A SER 260 A SER 260 HELX_P A LYS 272 A LYS 272 1 11 13 A VAL 279 A VAL 279 HELX_P A ALA 290 A ALA 290 1 12 12 A SER 311 A SER 311 HELX_P A ARG 316 A ARG 316 1 13 6 A ARG 317 A ARG 317 HELX_P A PHE 322 A PHE 322 1 14 6 A PRO 345 A PRO 345 HELX_P A THR 352 A THR 352 1 15 8 A ALA 395 A ALA 395 HELX_P A ALA 401 A ALA 401 1 16 7 A LYS 430 A LYS 430 HELX_P A GLN 432 A GLN 432 5 17 3 A ALA 441 A ALA 441 HELX_P A ALA 451 A ALA 451 1 18 11 A LYS 484 A LYS 484 HELX_P A ARG 495 A ARG 495 1 19 12 A ALA 498 A ALA 498 HELX_P A ILE 502 A ILE 502 5 20 5 A SER 521 A SER 521 HELX_P A GLY 536 A GLY 536 1 21 16 covale 1.334 A MSE 1 A C MSE 1 1_555 A LEU 2 A N LEU 2 1_555 covale 1.969 A GLY 191 A CA GLY 191 1_555 A AMP 600 B O2P AMP 1_555 covale 1.333 A PRO 231 A C PRO 231 1_555 A MSE 232 A N MSE 232 1_555 covale 1.328 A MSE 232 A C MSE 232 1_555 A ALA 233 A N ALA 233 1_555 covale 1.325 A ALA 283 A C ALA 283 1_555 A MSE 284 A N MSE 284 1_555 covale 1.334 A MSE 284 A C MSE 284 1_555 A VAL 285 A N VAL 285 1_555 covale 1.330 A TRP 286 A C TRP 286 1_555 A MSE 287 A N MSE 287 1_555 covale 1.329 A MSE 287 A C MSE 287 1_555 A ASP 288 A N ASP 288 1_555 covale 1.337 A GLY 331 A C GLY 331 1_555 A MSE 332 A N MSE 332 1_555 covale 1.330 A MSE 332 A C MSE 332 1_555 A ALA 333 A N ALA 333 1_555 covale 1.329 A PRO 356 A C PRO 356 1_555 A MSE 357 A N MSE 357 1_555 covale 1.330 A MSE 357 A C MSE 357 1_555 A SER 358 A N SER 358 1_555 covale 2.038 A ASP 413 A OD2 ASP 413 1_555 A AMP 600 B O2' AMP 1_555 covale 1.332 A ALA 459 A C ALA 459 1_555 A MSE 460 A N MSE 460 1_555 covale 1.321 A MSE 460 A C MSE 460 1_555 A VAL 461 A N VAL 461 1_555 covale 1.332 A SER 462 A C SER 462 1_555 A MSE 463 A N MSE 463 1_555 covale 1.331 A MSE 463 A C MSE 463 1_555 A PRO 464 A N PRO 464 1_555 LIGASE ligase, adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation A SER 240 A SER 240 1 A PRO 241 A PRO 241 -0.06 DHBE_BACSU UNP 1 1 P40871 1 539 1MD9 1 539 P40871 A 1 1 539 9 5 2 2 4 2 3 anti-parallel parallel parallel parallel parallel parallel anti-parallel anti-parallel parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel A THR 49 A THR 49 A SER 52 A SER 52 A ILE 42 A ILE 42 A CYS 46 A CYS 46 A ARG 252 A ARG 252 A LEU 255 A LEU 255 A VAL 225 A VAL 225 A ALA 228 A ALA 228 A ILE 275 A ILE 275 A LEU 278 A LEU 278 A VAL 302 A VAL 302 A GLY 306 A GLY 306 A THR 325 A THR 325 A MSE 332 A MSE 332 A GLY 335 A GLY 335 A TYR 339 A TYR 339 A LYS 355 A LYS 355 A PRO 356 A PRO 356 A LEU 101 A LEU 101 A PHE 104 A PHE 104 A ARG 77 A ARG 77 A VAL 80 A VAL 80 A ALA 123 A ALA 123 A PRO 129 A PRO 129 A ILE 154 A ILE 154 A ALA 157 A ALA 157 A LEU 164 A LEU 164 A PRO 165 A PRO 165 A ALA 131 A ALA 131 A TYR 132 A TYR 132 A PHE 135 A PHE 135 A ASP 136 A ASP 136 A VAL 184 A VAL 184 A LEU 189 A LEU 189 A LEU 199 A LEU 199 A THR 203 A THR 203 A GLU 362 A GLU 362 A TRP 366 A TRP 366 A THR 378 A THR 378 A ARG 384 A ARG 384 A TYR 409 A TYR 409 A LEU 417 A LEU 417 A ILE 423 A ILE 423 A ARG 428 A ARG 428 A ILE 433 A ILE 433 A ASN 434 A ASN 434 A LYS 439 A LYS 439 A VAL 440 A VAL 440 A VAL 455 A VAL 455 A ASP 465 A ASP 465 A GLY 469 A GLY 469 A PRO 478 A PRO 478 A ARG 505 A ARG 505 A PHE 508 A PHE 508 BINDING SITE FOR RESIDUE AMP A 600 Software 15 BINDING SITE FOR RESIDUE DBH A 601 Software 12 A GLY 191 A GLY 191 15 1_555 A GLY 192 A GLY 192 15 1_555 A GLY 307 A GLY 307 15 1_555 A ALA 308 A ALA 308 15 1_555 A LYS 309 A LYS 309 15 1_555 A VAL 329 A VAL 329 15 1_555 A PHE 330 A PHE 330 15 1_555 A GLY 331 A GLY 331 15 1_555 A MSE 332 A MSE 332 15 1_555 A THR 411 A THR 411 15 1_555 A ASP 413 A ASP 413 15 1_555 A VAL 425 A VAL 425 15 1_555 A ARG 428 A ARG 428 15 1_555 A LYS 519 A LYS 519 15 1_555 A DBH 601 C DBH 15 1_555 A HIS 234 A HIS 234 12 1_555 A ASN 235 A ASN 235 12 1_555 A TYR 236 A TYR 236 12 1_555 A SER 240 A SER 240 12 1_555 A GLY 307 A GLY 307 12 1_555 A VAL 329 A VAL 329 12 1_555 A GLY 331 A GLY 331 12 1_555 A MSE 332 A MSE 332 12 1_555 A ALA 333 A ALA 333 12 1_555 A VAL 337 A VAL 337 12 1_555 A LYS 519 A LYS 519 12 1_555 A AMP 600 B AMP 12 1_555 144 P 31