0.004488 0.000000 0.000000 0.000000 0.014124 0.000000 0.000000 0.000000 0.033333 0.00000 0.00000 0.00000 Ma, P.C.M. Rould, M.A. Weintraub, H. Pabo, C.O. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 222.800 70.800 30.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 N C N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C Y 90 N C N 91 N N Y 92 N N Y 93 N C Y 94 N N Y 95 N C N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N O N 111 N P N 112 N O N 113 N O N 114 N O N 115 N C N 116 R C N 117 N O N 118 S C N 119 N O N 120 N C N 121 R C N 122 N N N 123 N C N 124 N O N 125 N N N 126 N C N 127 N N N 128 N C N 129 N C N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N P N 146 N O N 147 N O N 148 N O N 149 N C N 150 R C N 151 N O N 152 S C N 153 N O N 154 N C N 155 R C Y 156 N N Y 157 N C Y 158 N N Y 159 N C N 160 N C N 161 N O N 162 N N N 163 N C N 164 N N N 165 N N Y 166 N C N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N O N 182 N P N 183 N O N 184 N O N 185 N O N 186 N C N 187 R C N 188 N O N 189 S C N 190 N O N 191 N C N 192 R C N 193 N N N 194 N C N 195 N O N 196 N N N 197 N C N 198 N O N 199 N C N 200 N C N 201 N C N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N C N 224 N O N 225 N N N 226 N O N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C N 242 N C N 243 N C N 244 N O N 245 N O N 246 N O N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 N C N 258 N C N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N O N 267 N H N 268 N H N 269 N N N 270 S C N 271 N C N 272 N O N 273 S C N 274 N C N 275 N C N 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N C N 297 N C N 298 N C N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N N N 314 S C N 315 N C N 316 N O N 317 N C N 318 N C N 319 N C N 320 N C N 321 N N N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C N 343 N C N 344 N S N 345 N C N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C N 369 N O N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N N N 382 S C N 383 N C N 384 N O N 385 N C N 386 N C N 387 N C N 388 N O N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N N N 399 S C N 400 N C N 401 N O N 402 N C N 403 N O N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N N N 413 S C N 414 N C N 415 N O N 416 R C N 417 N O N 418 N C N 419 N O N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N N N 430 S C N 431 N C N 432 N O N 433 N C Y 434 N C Y 435 N C Y 436 N C Y 437 N C Y 438 N C Y 439 N C N 440 N O N 441 N O N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N N N 454 S C N 455 N C N 456 N O N 457 N C N 458 N C N 459 N C N 460 N O N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing Y 93 N sing Y 94 N sing Y 95 N doub N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N doub N 102 N sing N 103 N sing Y 104 N sing Y 105 N doub N 106 N sing Y 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing Y 166 N sing Y 167 N sing Y 168 N doub N 169 N sing Y 170 N sing N 171 N sing Y 172 N doub N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N doub N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N doub N 359 N sing N 360 N sing N 361 N sing N 362 N sing Y 363 N doub Y 364 N sing Y 365 N sing N 366 N sing Y 367 N doub N 368 N sing Y 369 N doub N 370 N sing Y 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N doub N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N doub N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N doub N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N doub N 428 N sing N 429 N sing N 430 N sing N 431 N sing Y 432 N doub Y 433 N sing Y 434 N sing N 435 N sing Y 436 N doub N 437 N sing Y 438 N doub N 439 N sing Y 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N doub N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 77 451 459 10.1016/0092-8674(94)90159-7 8181063 Crystal structure of MyoD bHLH domain-DNA complex: perspectives on DNA recognition and implications for transcriptional activation. 1994 10.2210/pdb1mdy/pdb pdb_00001mdy 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M x-ray 1 1.0 4279.804 DNA (5'-D(*TP*CP*AP*AP*CP*AP*GP*CP*TP*GP*TP*TP*GP*A)-3') 4 syn polymer 8058.361 PROTEIN (MYOD BHLH DOMAIN) 1 nat polymer 7269.341 PROTEIN (MYOD BHLH DOMAIN) 3 nat polymer 18.015 water 25 nat water no no (DT)(DC)(DA)(DA)(DC)(DA)(DG)(DC)(DT)(DG)(DT)(DT)(DG)(DA) TCAACAGCTGTTGA E,F,G,H polydeoxyribonucleotide no no MELKRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD MELKRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD A polypeptide(L) no no TTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD TTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD B,C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus sample 10090 Mus musculus house mouse Mus sample 10090 Mus musculus 2.48 50.48 7.518 1 20 E 1 F 28 -2.463 E_DT1:DA28_F 1 -9.850 -0.301 -0.559 -0.481 6.261 1 19 E 2 F 27 -1.234 E_DC2:DG27_F 2 -9.197 0.081 -0.005 -0.385 0.034 1 20 E 3 F 26 -1.135 E_DA3:DT26_F 3 -10.304 -0.366 -0.058 -0.337 -1.556 1 20 E 4 F 25 -5.761 E_DA4:DT25_F 4 -11.656 -0.257 0.040 -0.214 -3.751 1 19 E 5 F 24 2.078 E_DC5:DG24_F 5 -10.079 0.480 0.241 0.143 18.405 1 20 E 6 F 23 -1.545 E_DA6:DT23_F 6 -21.875 1.042 0.646 -0.286 5.216 1 19 E 7 F 22 -4.418 E_DG7:DC22_F 7 -12.722 0.305 0.534 -0.359 -5.703 1 19 E 8 F 21 -2.988 E_DC8:DG21_F 8 -12.039 -0.241 0.621 -0.269 -17.672 1 20 E 9 F 20 -1.282 E_DT9:DA20_F 9 -21.585 -0.963 0.780 -0.277 2.985 1 19 E 10 F 19 3.513 E_DG10:DC19_F 10 -10.768 -0.417 0.115 0.122 3.352 1 20 E 11 F 18 -4.626 E_DT11:DA18_F 11 -11.314 0.265 0.011 -0.349 0.957 1 20 E 12 F 17 0.469 E_DT12:DA17_F 12 -13.601 0.321 0.009 -0.441 -7.187 1 19 E 13 F 16 0.127 E_DG13:DC16_F 13 -10.173 -0.241 -0.038 -0.359 -4.144 1 20 E 14 F 15 -1.324 E_DA14:DT15_F 14 -9.021 0.211 -0.388 -0.347 5.073 1 20 H 43 G 42 -1.588 H_DT43:DA42_G 15 -8.134 -0.308 -0.381 -0.454 7.017 1 19 H 44 G 41 -0.448 H_DC44:DG41_G 16 -7.097 0.194 -0.004 -0.424 -0.490 1 20 H 45 G 40 0.530 H_DA45:DT40_G 17 -11.256 -0.359 -0.043 -0.487 -0.083 1 20 H 46 G 39 -4.236 H_DA46:DT39_G 18 -8.844 -0.349 -0.067 -0.424 -1.743 1 19 H 47 G 38 3.773 H_DC47:DG38_G 19 -9.240 0.357 0.242 0.047 17.932 1 20 H 48 G 37 -0.482 H_DA48:DT37_G 20 -19.670 0.764 0.576 -0.344 3.359 1 19 H 49 G 36 -3.335 H_DG49:DC36_G 21 -11.595 -0.019 0.606 -0.240 -3.717 1 19 H 50 G 35 -3.821 H_DC50:DG35_G 22 -12.071 -0.205 0.394 -0.105 -15.608 1 20 H 51 G 34 -1.743 H_DT51:DA34_G 23 -20.023 -0.810 0.622 -0.248 1.997 1 19 H 52 G 33 3.438 H_DG52:DC33_G 24 -9.834 -0.295 0.202 0.088 1.695 1 20 H 53 G 32 -4.949 H_DT53:DA32_G 25 -10.593 0.318 0.140 -0.411 -1.035 1 20 H 54 G 31 0.538 H_DT54:DA31_G 26 -13.889 0.250 0.024 -0.525 -6.939 1 19 H 55 G 30 0.249 H_DG55:DC30_G 27 -9.947 -0.379 -0.094 -0.361 -4.666 1 20 H 56 G 29 -1.868 H_DA56:DT29_G 28 -8.643 0.128 -0.362 -0.237 3.437 31.738 E E 1 2 17.471 F F 28 27 3.596 9.415 0.486 0.067 EE_DT1DC2:DG27DA28_FF 1 -1.394 2.587 30.312 -1.783 -1.170 3.543 40.925 E E 2 3 0.040 F F 27 26 3.538 0.028 -0.402 1.586 EE_DC2DA3:DT26DG27_FF 2 -0.465 0.665 40.922 2.265 0.519 3.377 32.421 E E 3 4 9.690 F F 26 25 3.459 5.387 -0.149 -0.209 EE_DA3DA4:DT25DT26_FF 3 0.401 -0.722 31.980 -1.372 0.342 3.347 32.788 E E 4 5 1.189 F F 25 24 3.387 0.671 1.026 -0.535 EE_DA4DC5:DG24DT25_FF 4 -0.890 1.578 32.770 -1.067 -1.974 3.106 39.851 E E 5 6 13.489 F F 24 23 2.973 9.118 0.130 0.923 EE_DC5DA6:DT23DG24_FF 5 0.994 -1.471 38.823 0.361 -0.083 3.629 32.623 E E 6 7 4.010 F F 23 22 3.639 2.249 -0.644 -0.583 EE_DA6DG7:DC22DT23_FF 6 -2.444 4.359 32.458 -1.472 0.674 3.202 29.912 E E 7 8 16.036 F F 22 21 3.504 8.170 0.180 -0.576 EE_DG7DC8:DG21DC22_FF 7 -2.035 3.994 28.729 -2.888 -0.790 3.615 32.273 E E 8 9 2.640 F F 21 20 3.621 1.466 0.546 -0.640 EE_DC8DT9:DA20DG21_FF 8 1.942 -3.497 32.184 -1.440 -0.600 3.092 40.063 E E 9 10 13.596 F F 20 19 2.961 9.237 -0.164 0.929 EE_DT9DG10:DC19DA20_FF 9 0.317 -0.467 39.025 0.365 0.274 3.345 32.842 E E 10 11 -0.089 F F 19 18 3.334 -0.050 -1.033 -0.467 EE_DG10DT11:DA18DC19_FF 10 -0.326 0.576 32.840 -0.816 1.770 3.364 32.347 E E 11 12 9.922 F F 18 17 3.450 5.502 0.150 -0.228 EE_DT11DT12:DA17DA18_FF 11 -0.242 0.437 31.887 -1.430 -0.314 3.676 40.679 E E 12 13 1.570 F F 17 16 3.631 1.091 0.423 1.571 EE_DT12DG13:DC16DA17_FF 12 0.622 -0.895 40.661 2.125 -0.532 3.297 31.777 E E 13 14 15.502 F F 16 15 3.393 8.392 -0.494 0.071 EE_DG13DA14:DT15DC16_FF 13 0.013 -0.025 30.676 -1.473 0.906 2.407 85.297 E H 14 43 -8.121 F G 15 42 2.632 -10.983 0.184 2.054 EH_DA14DT43:DA42DT15_GF 14 2.720 -2.011 84.686 1.711 -0.087 3.379 31.736 H H 43 44 12.702 G G 42 41 3.464 6.892 0.456 0.046 HH_DT43DC44:DG41DA42_GG 15 -1.057 1.948 30.980 -1.257 -1.040 3.648 40.552 H H 44 45 -0.084 G G 41 40 3.651 -0.058 -0.371 1.523 HH_DC44DA45:DT40DG41_GG 16 0.115 -0.166 40.552 2.205 0.549 3.334 31.996 H H 45 46 7.852 G G 40 39 3.402 4.315 -0.106 -0.241 HH_DA45DA46:DT39DT40_GG 17 1.264 -2.301 31.687 -1.243 0.429 3.296 33.344 H H 46 47 3.393 G G 39 38 3.361 1.946 1.082 -0.525 HH_DA46DC47:DG38DT39_GG 18 -0.919 1.603 33.277 -1.244 -2.041 3.154 39.764 H H 47 48 12.079 G G 38 37 3.030 8.160 0.119 0.922 HH_DC47DA48:DT37DG38_GG 19 1.627 -2.408 38.918 0.450 0.006 3.609 32.361 H H 48 49 5.447 G G 37 36 3.638 3.025 -0.617 -0.656 HH_DA48DG49:DC36DT37_GG 20 -3.742 6.738 32.011 -1.772 0.371 3.135 29.550 H H 49 50 14.920 G G 36 35 3.436 7.522 -0.208 -0.666 HH_DG49DC50:DG35DC36_GG 21 2.335 -4.631 28.504 -2.939 0.914 3.471 32.593 H H 50 51 6.812 G G 35 34 3.540 3.814 0.659 -0.641 HH_DC50DT51:DA34DG35_GG 22 1.597 -2.854 32.337 -1.856 -0.874 3.234 40.029 H H 51 52 13.118 G G 34 33 3.112 8.910 -0.134 0.896 HH_DT51DG52:DC33DA34_GG 23 -0.610 0.898 39.060 0.306 0.126 3.357 33.055 H H 52 53 -0.653 G G 33 32 3.337 -0.372 -1.054 -0.546 HH_DG52DT53:DA32DC33_GG 24 -0.487 0.856 33.050 -0.896 1.769 3.352 32.172 H H 53 54 9.727 G G 32 31 3.444 5.367 0.116 -0.287 HH_DT53DT54:DA31DA32_GG 25 -0.046 0.083 31.733 -1.522 -0.218 3.580 40.910 H H 54 55 0.221 G G 31 30 3.568 0.154 0.376 1.548 HH_DT54DG55:DC30DA31_GG 26 0.856 -1.225 40.901 2.197 -0.435 3.375 31.305 H H 55 56 12.002 G G 30 29 3.421 6.432 -0.463 0.060 HH_DG55DA56:DT29DC30_GG 27 -0.829 1.547 30.642 -1.165 0.694 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 1994-08-31 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y BNL 1994-06-09 REL HOH water DNA SYNTHETIC OLIGONUCLEOTIDE OF 14 BASE PAIRS, CONTAINING THE OPTIMIZED DNA BINDING SITE FOR THE MYOD HOMODIMER: 5'-(TCAACAGCTGTTGA)-3'. THE PROTEIN RESIDUES ARE NUMBERED ACCORDING TO THE NATIVE SCHEME FOR MOUSE MYOD PROTEIN. THERE ARE FOUR SEPARATE MYOD MONOMERS IN THE ASYMMETRIC UNIT, WHICH HAVE BEEN ASSIGNED CHAIN IDENTIFIERS A, B, C, AND D. MONOMER A FORMS A DIMER WITH MONOMER B; MONOMER C FORMS A DIMER WITH MONOMER D. THERE ARE FOUR DNA STRANDS IN THE ASYMMETRIC UNIT, WHICH HAVE BEEN ASSIGNED CHAIN IDENTIFIERS E, F, G, AND H. STRAND E FORMS A DOUBLE STRAND WITH F, WHILE G AND H FORM THE OTHER DOUBLE STRAND. MYOD DIMER AB IS BOUND TO DNA DOUBLE STRAND EF. MYOD DIMER CD IS BOUND TO DNA DOUBLE STRAND GH. HOH 311 4 HOH HOH 15 E HOH 315 4 HOH HOH 16 E HOH 320 4 HOH HOH 17 E HOH 321 4 HOH HOH 18 E HOH 333 4 HOH HOH 19 E HOH 312 4 HOH HOH 29 F HOH 317 4 HOH HOH 30 F HOH 319 4 HOH HOH 31 F HOH 322 4 HOH HOH 32 F HOH 323 4 HOH HOH 33 F HOH 328 4 HOH HOH 34 F HOH 334 4 HOH HOH 35 F HOH 327 4 HOH HOH 17 G HOH 331 4 HOH HOH 21 G HOH 324 4 HOH HOH 14 H HOH 325 4 HOH HOH 15 H HOH 329 4 HOH HOH 19 H HOH 314 4 HOH HOH 4 A HOH 316 4 HOH HOH 6 A HOH 318 4 HOH HOH 8 A HOH 332 4 HOH HOH 22 A HOH 313 4 HOH HOH 3 B HOH 326 4 HOH HOH 16 C HOH 330 4 HOH HOH 20 C HOH 335 4 HOH HOH 25 C T 1 n 1 DT 1 E C 2 n 2 DC 2 E A 3 n 3 DA 3 E A 4 n 4 DA 4 E C 5 n 5 DC 5 E A 6 n 6 DA 6 E G 7 n 7 DG 7 E C 8 n 8 DC 8 E T 9 n 9 DT 9 E G 10 n 10 DG 10 E T 11 n 11 DT 11 E T 12 n 12 DT 12 E G 13 n 13 DG 13 E A 14 n 14 DA 14 E T 15 n 1 DT 15 F C 16 n 2 DC 16 F A 17 n 3 DA 17 F A 18 n 4 DA 18 F C 19 n 5 DC 19 F A 20 n 6 DA 20 F G 21 n 7 DG 21 F C 22 n 8 DC 22 F T 23 n 9 DT 23 F G 24 n 10 DG 24 F T 25 n 11 DT 25 F T 26 n 12 DT 26 F G 27 n 13 DG 27 F A 28 n 14 DA 28 F T 29 n 1 DT 29 G C 30 n 2 DC 30 G A 31 n 3 DA 31 G A 32 n 4 DA 32 G C 33 n 5 DC 33 G A 34 n 6 DA 34 G G 35 n 7 DG 35 G C 36 n 8 DC 36 G T 37 n 9 DT 37 G G 38 n 10 DG 38 G T 39 n 11 DT 39 G T 40 n 12 DT 40 G G 41 n 13 DG 41 G A 42 n 14 DA 42 G T 43 n 1 DT 43 H C 44 n 2 DC 44 H A 45 n 3 DA 45 H A 46 n 4 DA 46 H C 47 n 5 DC 47 H A 48 n 6 DA 48 H G 49 n 7 DG 49 H C 50 n 8 DC 50 H T 51 n 9 DT 51 H G 52 n 10 DG 52 H T 53 n 11 DT 53 H T 54 n 12 DT 54 H G 55 n 13 DG 55 H A 56 n 14 DA 56 H MET 57 n 1 MET 1 A GLU 58 n 2 GLU 2 A LEU 59 n 3 LEU 3 A LYS 60 n 4 LYS 102 A ARG 61 n 5 ARG 103 A LYS 62 n 6 LYS 104 A THR 63 n 7 THR 105 A THR 64 n 8 THR 106 A ASN 65 n 9 ASN 107 A ALA 66 n 10 ALA 108 A ASP 67 n 11 ASP 109 A ARG 68 n 12 ARG 110 A ARG 69 n 13 ARG 111 A LYS 70 n 14 LYS 112 A ALA 71 n 15 ALA 113 A ALA 72 n 16 ALA 114 A THR 73 n 17 THR 115 A MET 74 n 18 MET 116 A ARG 75 n 19 ARG 117 A GLU 76 n 20 GLU 118 A ARG 77 n 21 ARG 119 A ARG 78 n 22 ARG 120 A ARG 79 n 23 ARG 121 A LEU 80 n 24 LEU 122 A SER 81 n 25 SER 123 A LYS 82 n 26 LYS 124 A VAL 83 n 27 VAL 125 A ASN 84 n 28 ASN 126 A GLU 85 n 29 GLU 127 A ALA 86 n 30 ALA 128 A PHE 87 n 31 PHE 129 A GLU 88 n 32 GLU 130 A THR 89 n 33 THR 131 A LEU 90 n 34 LEU 132 A LYS 91 n 35 LYS 133 A ARG 92 n 36 ARG 134 A SER 93 n 37 SER 135 A THR 94 n 38 THR 136 A SER 95 n 39 SER 137 A SER 96 n 40 SER 138 A ASN 97 n 41 ASN 139 A PRO 98 n 42 PRO 140 A ASN 99 n 43 ASN 141 A GLN 100 n 44 GLN 142 A ARG 101 n 45 ARG 143 A LEU 102 n 46 LEU 144 A PRO 103 n 47 PRO 145 A LYS 104 n 48 LYS 146 A VAL 105 n 49 VAL 147 A GLU 106 n 50 GLU 148 A ILE 107 n 51 ILE 149 A LEU 108 n 52 LEU 150 A ARG 109 n 53 ARG 151 A ASN 110 n 54 ASN 152 A ALA 111 n 55 ALA 153 A ILE 112 n 56 ILE 154 A ARG 113 n 57 ARG 155 A TYR 114 n 58 TYR 156 A ILE 115 n 59 ILE 157 A GLU 116 n 60 GLU 158 A GLY 117 n 61 GLY 159 A LEU 118 n 62 LEU 160 A GLN 119 n 63 GLN 161 A ALA 120 n 64 ALA 162 A LEU 121 n 65 LEU 163 A LEU 122 n 66 LEU 164 A ARG 123 n 67 ARG 165 A ASP 124 n 68 ASP 166 A THR 125 n 1 THR 105 B THR 126 n 2 THR 106 B ASN 127 n 3 ASN 107 B ALA 128 n 4 ALA 108 B ASP 129 n 5 ASP 109 B ARG 130 n 6 ARG 110 B ARG 131 n 7 ARG 111 B LYS 132 n 8 LYS 112 B ALA 133 n 9 ALA 113 B ALA 134 n 10 ALA 114 B THR 135 n 11 THR 115 B MET 136 n 12 MET 116 B ARG 137 n 13 ARG 117 B GLU 138 n 14 GLU 118 B ARG 139 n 15 ARG 119 B ARG 140 n 16 ARG 120 B ARG 141 n 17 ARG 121 B LEU 142 n 18 LEU 122 B SER 143 n 19 SER 123 B LYS 144 n 20 LYS 124 B VAL 145 n 21 VAL 125 B ASN 146 n 22 ASN 126 B GLU 147 n 23 GLU 127 B ALA 148 n 24 ALA 128 B PHE 149 n 25 PHE 129 B GLU 150 n 26 GLU 130 B THR 151 n 27 THR 131 B LEU 152 n 28 LEU 132 B LYS 153 n 29 LYS 133 B ARG 154 n 30 ARG 134 B SER 155 n 31 SER 135 B THR 156 n 32 THR 136 B SER 157 n 33 SER 137 B SER 158 n 34 SER 138 B ASN 159 n 35 ASN 139 B PRO 160 n 36 PRO 140 B ASN 161 n 37 ASN 141 B GLN 162 n 38 GLN 142 B ARG 163 n 39 ARG 143 B LEU 164 n 40 LEU 144 B PRO 165 n 41 PRO 145 B LYS 166 n 42 LYS 146 B VAL 167 n 43 VAL 147 B GLU 168 n 44 GLU 148 B ILE 169 n 45 ILE 149 B LEU 170 n 46 LEU 150 B ARG 171 n 47 ARG 151 B ASN 172 n 48 ASN 152 B ALA 173 n 49 ALA 153 B ILE 174 n 50 ILE 154 B ARG 175 n 51 ARG 155 B TYR 176 n 52 TYR 156 B ILE 177 n 53 ILE 157 B GLU 178 n 54 GLU 158 B GLY 179 n 55 GLY 159 B LEU 180 n 56 LEU 160 B GLN 181 n 57 GLN 161 B ALA 182 n 58 ALA 162 B LEU 183 n 59 LEU 163 B LEU 184 n 60 LEU 164 B ARG 185 n 61 ARG 165 B ASP 186 n 62 ASP 166 B THR 187 n 1 THR 105 C THR 188 n 2 THR 106 C ASN 189 n 3 ASN 107 C ALA 190 n 4 ALA 108 C ASP 191 n 5 ASP 109 C ARG 192 n 6 ARG 110 C ARG 193 n 7 ARG 111 C LYS 194 n 8 LYS 112 C ALA 195 n 9 ALA 113 C ALA 196 n 10 ALA 114 C THR 197 n 11 THR 115 C MET 198 n 12 MET 116 C ARG 199 n 13 ARG 117 C GLU 200 n 14 GLU 118 C ARG 201 n 15 ARG 119 C ARG 202 n 16 ARG 120 C ARG 203 n 17 ARG 121 C LEU 204 n 18 LEU 122 C SER 205 n 19 SER 123 C LYS 206 n 20 LYS 124 C VAL 207 n 21 VAL 125 C ASN 208 n 22 ASN 126 C GLU 209 n 23 GLU 127 C ALA 210 n 24 ALA 128 C PHE 211 n 25 PHE 129 C GLU 212 n 26 GLU 130 C THR 213 n 27 THR 131 C LEU 214 n 28 LEU 132 C LYS 215 n 29 LYS 133 C ARG 216 n 30 ARG 134 C SER 217 n 31 SER 135 C THR 218 n 32 THR 136 C SER 219 n 33 SER 137 C SER 220 n 34 SER 138 C ASN 221 n 35 ASN 139 C PRO 222 n 36 PRO 140 C ASN 223 n 37 ASN 141 C GLN 224 n 38 GLN 142 C ARG 225 n 39 ARG 143 C LEU 226 n 40 LEU 144 C PRO 227 n 41 PRO 145 C LYS 228 n 42 LYS 146 C VAL 229 n 43 VAL 147 C GLU 230 n 44 GLU 148 C ILE 231 n 45 ILE 149 C LEU 232 n 46 LEU 150 C ARG 233 n 47 ARG 151 C ASN 234 n 48 ASN 152 C ALA 235 n 49 ALA 153 C ILE 236 n 50 ILE 154 C ARG 237 n 51 ARG 155 C TYR 238 n 52 TYR 156 C ILE 239 n 53 ILE 157 C GLU 240 n 54 GLU 158 C GLY 241 n 55 GLY 159 C LEU 242 n 56 LEU 160 C GLN 243 n 57 GLN 161 C ALA 244 n 58 ALA 162 C LEU 245 n 59 LEU 163 C LEU 246 n 60 LEU 164 C ARG 247 n 61 ARG 165 C ASP 248 n 62 ASP 166 C THR 249 n 1 THR 105 D THR 250 n 2 THR 106 D ASN 251 n 3 ASN 107 D ALA 252 n 4 ALA 108 D ASP 253 n 5 ASP 109 D ARG 254 n 6 ARG 110 D ARG 255 n 7 ARG 111 D LYS 256 n 8 LYS 112 D ALA 257 n 9 ALA 113 D ALA 258 n 10 ALA 114 D THR 259 n 11 THR 115 D MET 260 n 12 MET 116 D ARG 261 n 13 ARG 117 D GLU 262 n 14 GLU 118 D ARG 263 n 15 ARG 119 D ARG 264 n 16 ARG 120 D ARG 265 n 17 ARG 121 D LEU 266 n 18 LEU 122 D SER 267 n 19 SER 123 D LYS 268 n 20 LYS 124 D VAL 269 n 21 VAL 125 D ASN 270 n 22 ASN 126 D GLU 271 n 23 GLU 127 D ALA 272 n 24 ALA 128 D PHE 273 n 25 PHE 129 D GLU 274 n 26 GLU 130 D THR 275 n 27 THR 131 D LEU 276 n 28 LEU 132 D LYS 277 n 29 LYS 133 D ARG 278 n 30 ARG 134 D SER 279 n 31 SER 135 D THR 280 n 32 THR 136 D SER 281 n 33 SER 137 D SER 282 n 34 SER 138 D ASN 283 n 35 ASN 139 D PRO 284 n 36 PRO 140 D ASN 285 n 37 ASN 141 D GLN 286 n 38 GLN 142 D ARG 287 n 39 ARG 143 D LEU 288 n 40 LEU 144 D PRO 289 n 41 PRO 145 D LYS 290 n 42 LYS 146 D VAL 291 n 43 VAL 147 D GLU 292 n 44 GLU 148 D ILE 293 n 45 ILE 149 D LEU 294 n 46 LEU 150 D ARG 295 n 47 ARG 151 D ASN 296 n 48 ASN 152 D ALA 297 n 49 ALA 153 D ILE 298 n 50 ILE 154 D ARG 299 n 51 ARG 155 D TYR 300 n 52 TYR 156 D ILE 301 n 53 ILE 157 D GLU 302 n 54 GLU 158 D GLY 303 n 55 GLY 159 D LEU 304 n 56 LEU 160 D GLN 305 n 57 GLN 161 D ALA 306 n 58 ALA 162 D LEU 307 n 59 LEU 163 D LEU 308 n 60 LEU 164 D ARG 309 n 61 ARG 165 D ASP 310 n 62 ASP 166 D author_defined_assembly 4 tetrameric author_defined_assembly 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 E E OP2 O DC HOH 5 19 2.15 1 F F O4 O DT HOH 25 30 2.19 1 3.72 0.30 108.30 112.02 E E E O4' C1' N1 DT DT DT 1 1 1 N 1 3.18 0.30 108.30 111.48 E E E O4' C1' N1 DC DC DC 2 2 2 N 1 -10.70 1.60 120.90 110.20 E E E P O5' C5' DC DC DC 5 5 5 N 1 -3.71 0.40 104.50 100.79 E E E O4' C4' C3' DC DC DC 5 5 5 N 1 6.03 0.30 108.30 114.33 E E E O4' C1' N9 DA DA DA 6 6 6 N 1 -6.18 1.00 110.10 103.92 E E E C1' O4' C4' DC DC DC 8 8 8 N 1 -3.94 0.40 104.50 100.56 E E E O4' C4' C3' DT DT DT 9 9 9 N 1 1.99 0.30 108.30 110.29 E E E O4' C1' N1 DT DT DT 9 9 9 N 1 -4.77 0.70 108.00 103.23 E E E O4' C1' N1 DT DT DT 11 11 11 N 1 3.97 0.30 108.30 112.27 E E E O4' C1' N1 DT DT DT 12 12 12 N 1 -5.65 0.80 102.40 96.75 E E E C3' C2' C1' DA DA DA 14 14 14 N 1 4.35 0.30 108.30 112.65 F F F O4' C1' N1 DT DT DT 15 15 15 N 1 2.71 0.30 108.30 111.01 F F F O4' C1' N1 DC DC DC 16 16 16 N 1 -3.49 0.40 104.50 101.01 F F F O4' C4' C3' DC DC DC 19 19 19 N 1 5.27 0.30 108.30 113.57 F F F O4' C1' N9 DA DA DA 20 20 20 N 1 -6.40 0.80 109.40 103.00 F F F O5' C5' C4' DG DG DG 21 21 21 N 1 9.22 1.20 119.70 128.92 F F F C3' O3' P DG DG DC 21 21 22 Y 1 -4.59 0.40 104.50 99.91 F F F O4' C4' C3' DT DT DT 23 23 23 N 1 -4.88 0.70 108.00 103.12 F F F O4' C1' N1 DT DT DT 25 25 25 N 1 5.92 0.30 108.30 114.22 F F F O4' C1' N1 DT DT DT 26 26 26 N 1 -6.49 0.80 102.40 95.91 F F F C3' C2' C1' DA DA DA 28 28 28 N 1 3.32 0.30 108.30 111.62 G G G O4' C1' N1 DT DT DT 29 29 29 N 1 3.09 0.30 108.30 111.39 G G G O4' C1' N1 DC DC DC 30 30 30 N 1 -4.59 0.70 108.00 103.41 G G G O4' C1' N9 DA DA DA 31 31 31 N 1 -12.09 1.60 120.90 108.81 G G G P O5' C5' DA DA DA 32 32 32 N 1 -10.63 1.60 120.90 110.27 G G G P O5' C5' DC DC DC 33 33 33 N 1 4.64 0.30 108.30 112.94 G G G O4' C1' N9 DA DA DA 34 34 34 N 1 -5.68 0.80 109.40 103.72 G G G O5' C5' C4' DG DG DG 35 35 35 N 1 -7.02 1.00 110.10 103.08 G G G C1' O4' C4' DC DC DC 36 36 36 N 1 -3.96 0.40 104.50 100.54 G G G O4' C4' C3' DT DT DT 37 37 37 N 1 2.61 0.30 108.30 110.91 G G G O4' C1' N1 DT DT DT 37 37 37 N 1 -6.66 0.70 108.00 101.34 G G G O4' C1' N1 DT DT DT 39 39 39 N 1 4.72 0.30 108.30 113.02 G G G O4' C1' N1 DT DT DT 40 40 40 N 1 -4.98 0.80 102.40 97.42 G G G C3' C2' C1' DA DA DA 42 42 42 N 1 2.00 0.30 108.30 110.30 G G G O4' C1' N9 DA DA DA 42 42 42 N 1 3.71 0.30 108.30 112.01 H H H O4' C1' N1 DT DT DT 43 43 43 N 1 -5.18 0.40 104.50 99.32 H H H O4' C4' C3' DC DC DC 47 47 47 N 1 6.57 0.30 108.30 114.87 H H H O4' C1' N9 DA DA DA 48 48 48 N 1 7.32 1.20 119.70 127.02 H H H C3' O3' P DA DA DG 48 48 49 Y 1 8.30 1.20 119.70 128.00 H H H C3' O3' P DG DG DC 49 49 50 Y 1 -4.71 0.40 104.50 99.79 H H H O4' C4' C3' DT DT DT 51 51 51 N 1 3.23 0.30 108.30 111.53 H H H O4' C1' N1 DT DT DT 51 51 51 N 1 -6.17 0.70 108.00 101.83 H H H O4' C1' N1 DT DT DT 53 53 53 N 1 4.89 0.30 108.30 113.19 H H H O4' C1' N1 DT DT DT 54 54 54 N 1 2.24 0.30 108.30 110.54 H H H O4' C1' N9 DA DA DA 56 56 56 N 1 E E O3' C3' DC DC 2 2 -0.053 0.006 1.419 1.366 N 1 F F O3' C3' DC DC 16 16 -0.038 0.006 1.419 1.381 N 1 H H O3' C3' DC DC 44 44 -0.038 0.006 1.419 1.381 N 1 A LYS 102 -143.86 -159.47 1 A LYS 104 -156.12 -53.05 1 A THR 105 -88.61 31.87 1 A SER 135 -106.80 -61.73 1 A THR 136 -54.42 -79.63 1 A GLN 142 -75.95 -162.97 1 A ARG 143 -157.28 70.18 1 A LEU 163 -61.25 10.73 1 A LEU 164 -150.48 12.34 1 B ASN 107 -74.43 24.03 1 B ARG 119 -51.33 -70.78 1 B LEU 163 -84.47 35.88 1 B LEU 164 -165.33 54.02 1 C ASN 107 -94.30 -62.08 1 C SER 135 -146.94 -9.91 1 C SER 138 -66.37 -84.04 1 C ASN 139 -56.96 102.17 1 C GLN 142 -52.29 103.90 1 D THR 106 -69.80 25.17 1 D ASN 107 -122.02 -67.39 1 D THR 115 -99.94 -62.07 1 D ASN 139 -57.89 99.06 1 D ASN 141 70.81 -40.92 1 D ARG 165 -167.26 -87.36 0.3300000 0.2530000 0.2530000 2.800 1 2.800 25 3247 0 1136 2086 refinement X-PLOR refinement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hydrog WATSON-CRICK E DT 1 A N3 DT 1 1_555 F DA 28 B N1 DA 14 1_555 hydrog WATSON-CRICK E DT 1 A O4 DT 1 1_555 F DA 28 B N6 DA 14 1_555 hydrog WATSON-CRICK E DC 2 A N3 DC 2 1_555 F DG 27 B N1 DG 13 1_555 hydrog WATSON-CRICK E DC 2 A N4 DC 2 1_555 F DG 27 B O6 DG 13 1_555 hydrog WATSON-CRICK E DC 2 A O2 DC 2 1_555 F DG 27 B N2 DG 13 1_555 hydrog WATSON-CRICK E DA 3 A N1 DA 3 1_555 F DT 26 B N3 DT 12 1_555 hydrog WATSON-CRICK E DA 3 A N6 DA 3 1_555 F DT 26 B O4 DT 12 1_555 hydrog WATSON-CRICK E DA 4 A N1 DA 4 1_555 F DT 25 B N3 DT 11 1_555 hydrog WATSON-CRICK E DA 4 A N6 DA 4 1_555 F DT 25 B O4 DT 11 1_555 hydrog WATSON-CRICK E DC 5 A N3 DC 5 1_555 F DG 24 B N1 DG 10 1_555 hydrog WATSON-CRICK E DC 5 A N4 DC 5 1_555 F DG 24 B O6 DG 10 1_555 hydrog WATSON-CRICK E DC 5 A O2 DC 5 1_555 F DG 24 B N2 DG 10 1_555 hydrog WATSON-CRICK E DA 6 A N1 DA 6 1_555 F DT 23 B N3 DT 9 1_555 hydrog WATSON-CRICK E DA 6 A N6 DA 6 1_555 F DT 23 B O4 DT 9 1_555 hydrog WATSON-CRICK E DG 7 A N1 DG 7 1_555 F DC 22 B N3 DC 8 1_555 hydrog WATSON-CRICK E DG 7 A N2 DG 7 1_555 F DC 22 B O2 DC 8 1_555 hydrog WATSON-CRICK E DG 7 A O6 DG 7 1_555 F DC 22 B N4 DC 8 1_555 hydrog WATSON-CRICK E DC 8 A N3 DC 8 1_555 F DG 21 B N1 DG 7 1_555 hydrog WATSON-CRICK E DC 8 A N4 DC 8 1_555 F DG 21 B O6 DG 7 1_555 hydrog WATSON-CRICK E DC 8 A O2 DC 8 1_555 F DG 21 B N2 DG 7 1_555 hydrog WATSON-CRICK E DT 9 A N3 DT 9 1_555 F DA 20 B N1 DA 6 1_555 hydrog WATSON-CRICK E DT 9 A O4 DT 9 1_555 F DA 20 B N6 DA 6 1_555 hydrog WATSON-CRICK E DG 10 A N1 DG 10 1_555 F DC 19 B N3 DC 5 1_555 hydrog WATSON-CRICK E DG 10 A N2 DG 10 1_555 F DC 19 B O2 DC 5 1_555 hydrog WATSON-CRICK E DG 10 A O6 DG 10 1_555 F DC 19 B N4 DC 5 1_555 hydrog WATSON-CRICK E DT 11 A N3 DT 11 1_555 F DA 18 B N1 DA 4 1_555 hydrog WATSON-CRICK E DT 11 A O4 DT 11 1_555 F DA 18 B N6 DA 4 1_555 hydrog WATSON-CRICK E DT 12 A N3 DT 12 1_555 F DA 17 B N1 DA 3 1_555 hydrog WATSON-CRICK E DT 12 A O4 DT 12 1_555 F DA 17 B N6 DA 3 1_555 hydrog WATSON-CRICK E DG 13 A N1 DG 13 1_555 F DC 16 B N3 DC 2 1_555 hydrog WATSON-CRICK E DG 13 A N2 DG 13 1_555 F DC 16 B O2 DC 2 1_555 hydrog WATSON-CRICK E DG 13 A O6 DG 13 1_555 F DC 16 B N4 DC 2 1_555 hydrog WATSON-CRICK E DA 14 A N1 DA 14 1_555 F DT 15 B N3 DT 1 1_555 hydrog WATSON-CRICK E DA 14 A N6 DA 14 1_555 F DT 15 B O4 DT 1 1_555 hydrog WATSON-CRICK G DT 29 C N3 DT 1 1_555 H DA 56 D N1 DA 14 1_555 hydrog WATSON-CRICK G DT 29 C O4 DT 1 1_555 H DA 56 D N6 DA 14 1_555 hydrog WATSON-CRICK G DC 30 C N3 DC 2 1_555 H DG 55 D N1 DG 13 1_555 hydrog WATSON-CRICK G DC 30 C N4 DC 2 1_555 H DG 55 D O6 DG 13 1_555 hydrog WATSON-CRICK G DC 30 C O2 DC 2 1_555 H DG 55 D N2 DG 13 1_555 hydrog WATSON-CRICK G DA 31 C N1 DA 3 1_555 H DT 54 D N3 DT 12 1_555 hydrog WATSON-CRICK G DA 31 C N6 DA 3 1_555 H DT 54 D O4 DT 12 1_555 hydrog WATSON-CRICK G DA 32 C N1 DA 4 1_555 H DT 53 D N3 DT 11 1_555 hydrog WATSON-CRICK G DA 32 C N6 DA 4 1_555 H DT 53 D O4 DT 11 1_555 hydrog WATSON-CRICK G DC 33 C N3 DC 5 1_555 H DG 52 D N1 DG 10 1_555 hydrog WATSON-CRICK G DC 33 C N4 DC 5 1_555 H DG 52 D O6 DG 10 1_555 hydrog WATSON-CRICK G DC 33 C O2 DC 5 1_555 H DG 52 D N2 DG 10 1_555 hydrog WATSON-CRICK G DA 34 C N1 DA 6 1_555 H DT 51 D N3 DT 9 1_555 hydrog WATSON-CRICK G DA 34 C N6 DA 6 1_555 H DT 51 D O4 DT 9 1_555 hydrog WATSON-CRICK G DG 35 C N1 DG 7 1_555 H DC 50 D N3 DC 8 1_555 hydrog WATSON-CRICK G DG 35 C N2 DG 7 1_555 H DC 50 D O2 DC 8 1_555 hydrog WATSON-CRICK G DG 35 C O6 DG 7 1_555 H DC 50 D N4 DC 8 1_555 hydrog WATSON-CRICK G DC 36 C N3 DC 8 1_555 H DG 49 D N1 DG 7 1_555 hydrog WATSON-CRICK G DC 36 C N4 DC 8 1_555 H DG 49 D O6 DG 7 1_555 hydrog WATSON-CRICK G DC 36 C O2 DC 8 1_555 H DG 49 D N2 DG 7 1_555 hydrog WATSON-CRICK G DT 37 C N3 DT 9 1_555 H DA 48 D N1 DA 6 1_555 hydrog WATSON-CRICK G DT 37 C O4 DT 9 1_555 H DA 48 D N6 DA 6 1_555 hydrog WATSON-CRICK G DG 38 C N1 DG 10 1_555 H DC 47 D N3 DC 5 1_555 hydrog WATSON-CRICK G DG 38 C N2 DG 10 1_555 H DC 47 D O2 DC 5 1_555 hydrog WATSON-CRICK G DG 38 C O6 DG 10 1_555 H DC 47 D N4 DC 5 1_555 hydrog WATSON-CRICK G DT 39 C N3 DT 11 1_555 H DA 46 D N1 DA 4 1_555 hydrog WATSON-CRICK G DT 39 C O4 DT 11 1_555 H DA 46 D N6 DA 4 1_555 hydrog WATSON-CRICK G DT 40 C N3 DT 12 1_555 H DA 45 D N1 DA 3 1_555 hydrog WATSON-CRICK G DT 40 C O4 DT 12 1_555 H DA 45 D N6 DA 3 1_555 hydrog WATSON-CRICK G DG 41 C N1 DG 13 1_555 H DC 44 D N3 DC 2 1_555 hydrog WATSON-CRICK G DG 41 C N2 DG 13 1_555 H DC 44 D O2 DC 2 1_555 hydrog WATSON-CRICK G DG 41 C O6 DG 13 1_555 H DC 44 D N4 DC 2 1_555 hydrog WATSON-CRICK G DA 42 C N1 DA 14 1_555 H DT 43 D N3 DT 1 1_555 hydrog WATSON-CRICK G DA 42 C N6 DA 14 1_555 H DT 43 D O4 DT 1 1_555 TRANSCRIPTION/DNA PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX given -0.645814 0.720520 -0.252539 0.744460 0.667667 0.001127 0.169423 -0.187277 -0.967586 102.97015 -45.90718 11.36556 given -0.533164 0.834325 0.140135 0.807272 0.551272 -0.210739 -0.253077 0.000768 -0.967446 173.68367 -90.34569 34.22189 MYOD_MOUSE UNP 2 1MDY PDB 1 102 166 1MDY 102 166 P10085 A 1 4 68 105 166 1MDY 105 166 P10085 B 1 1 62 105 166 1MDY 105 166 P10085 C 1 1 62 105 166 1MDY 105 166 P10085 D 1 1 62 1 14 1MDY 1 14 1MDY E 2 1 14 15 28 1MDY 15 28 1MDY F 2 1 14 29 42 1MDY 29 42 1MDY G 2 1 14 43 56 1MDY 43 56 1MDY H 2 1 14 18 P 21 21 2