1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
CYS 10 - PRO 11 MODEL 1 OMEGA =221.65 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
SER 15 - PRO 16 MODEL 1 OMEGA =230.63 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
CYS 10 - PRO 11 MODEL 2 OMEGA =226.31 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
SER 15 - PRO 16 MODEL 2 OMEGA =233.15 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
CYS 10 - PRO 11 MODEL 4 OMEGA =212.66 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
SER 15 - PRO 16 MODEL 4 OMEGA =223.41 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
CYS 10 - PRO 11 MODEL 5 OMEGA =227.82 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
CYS 10 - PRO 11 MODEL 6 OMEGA =216.14 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
SER 15 - PRO 16 MODEL 6 OMEGA =213.88 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
CYS 10 - PRO 11 MODEL 8 OMEGA =211.33 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
SER 15 - PRO 16 MODEL 8 OMEGA =214.66 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
CYS 10 - PRO 11 MODEL 9 OMEGA =215.05 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
SER 15 - PRO 16 MODEL 9 OMEGA =234.13 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
CYS 10 - PRO 11 MODEL 10 OMEGA =221.52 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
SER 15 - PRO 16 MODEL 10 OMEGA =220.78 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
CYS 10 - PRO 11 MODEL 11 OMEGA =212.67 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
SER 15 - PRO 16 MODEL 11 OMEGA =236.00 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
Fourmy, D.
Dardel, F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
C
N
143
N
C
N
144
N
C
N
145
N
N
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
N
C
Y
167
N
C
Y
168
N
C
Y
169
N
C
Y
170
N
C
Y
171
N
C
Y
172
N
C
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
O
N
208
N
O
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
R
C
N
221
N
O
N
222
N
C
N
223
N
O
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
N
C
Y
238
N
C
Y
239
N
C
Y
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
N
244
N
O
N
245
N
O
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
S
C
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
C
N
263
N
C
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
Y
164
N
doub
Y
165
N
sing
Y
166
N
sing
N
167
N
sing
Y
168
N
doub
N
169
N
sing
Y
170
N
doub
N
171
N
sing
Y
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
Y
233
N
doub
Y
234
N
sing
Y
235
N
sing
N
236
N
sing
Y
237
N
doub
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
231
1078
1089
10.1006/jmbi.1993.1353
8515466
Methionyl-tRNA synthetase zinc binding domain. Three-dimensional structure and homology with rubredoxin and gag retroviral proteins.
1993
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
231
1068
Mapping of the Zinc Binding Domain of Escherichia Coli Methionyl-tRNA Synthetase
1993
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
216
411
Crystallographic Study at 2.5 Angstroms Resolution of the Interaction of Methionyl-tRNA Synthetase from Escherichia Coli with ATP
1990
10.2210/pdb1med/pdb
pdb_00001med
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
2969.311
METHIONYL-tRNA SYNTHETASE
6.1.1.10
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
no
no
GSDRFVKGTCPKCKSPDQYGDNCEVCGA
GSDRFVKGTCPKCKSPDQYGDNCEVCGA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
sample
GAG
562
Escherichia coli
GAG
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conf
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
Data collection
Database references
Derived calculations
1
0
1993-10-31
1
1
2008-03-03
1
2
2011-07-13
1
3
2017-11-29
1
4
2024-05-01
_pdbx_database_status.process_site
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1992-11-09
REL
ZN
ZINC ION
11
ZN
29
2
ZN
ZN
29
A
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
ASP
3
n
3
ASP
3
A
ARG
4
n
4
ARG
4
A
PHE
5
n
5
PHE
5
A
VAL
6
n
6
VAL
6
A
LYS
7
n
7
LYS
7
A
GLY
8
n
8
GLY
8
A
THR
9
n
9
THR
9
A
CYS
10
n
10
CYS
10
A
PRO
11
n
11
PRO
11
A
LYS
12
n
12
LYS
12
A
CYS
13
n
13
CYS
13
A
LYS
14
n
14
LYS
14
A
SER
15
n
15
SER
15
A
PRO
16
n
16
PRO
16
A
ASP
17
n
17
ASP
17
A
GLN
18
n
18
GLN
18
A
TYR
19
n
19
TYR
19
A
GLY
20
n
20
GLY
20
A
ASP
21
n
21
ASP
21
A
ASN
22
n
22
ASN
22
A
CYS
23
n
23
CYS
23
A
GLU
24
n
24
GLU
24
A
VAL
25
n
25
VAL
25
A
CYS
26
n
26
CYS
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
author_defined_assembly
1
monomeric
A
CYS
10
A
SG
CYS
10
1_555
A
ZN
29
B
ZN
ZN
1_555
A
CYS
13
A
SG
CYS
13
1_555
109.1
A
CYS
10
A
SG
CYS
10
1_555
A
ZN
29
B
ZN
ZN
1_555
A
CYS
23
A
SG
CYS
23
1_555
104.8
A
CYS
13
A
SG
CYS
13
1_555
A
ZN
29
B
ZN
ZN
1_555
A
CYS
23
A
SG
CYS
23
1_555
109.3
A
CYS
10
A
SG
CYS
10
1_555
A
ZN
29
B
ZN
ZN
1_555
A
CYS
26
A
SG
CYS
26
1_555
109.4
A
CYS
13
A
SG
CYS
13
1_555
A
ZN
29
B
ZN
ZN
1_555
A
CYS
26
A
SG
CYS
26
1_555
113.1
A
CYS
23
A
SG
CYS
23
1_555
A
ZN
29
B
ZN
ZN
1_555
A
CYS
26
A
SG
CYS
26
1_555
110.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
8
A
A
H
H
LYS
GLY
7
8
1.28
1
A
A
CYS
PRO
10
11
-138.35
1
A
A
SER
PRO
15
16
-129.37
2
A
A
CYS
PRO
10
11
-133.69
2
A
A
SER
PRO
15
16
-126.85
4
A
A
CYS
PRO
10
11
-147.34
4
A
A
SER
PRO
15
16
-136.59
5
A
A
CYS
PRO
10
11
-132.18
6
A
A
CYS
PRO
10
11
-143.86
6
A
A
SER
PRO
15
16
-146.12
8
A
A
CYS
PRO
10
11
-148.67
8
A
A
SER
PRO
15
16
-145.34
9
A
A
CYS
PRO
10
11
-144.95
9
A
A
SER
PRO
15
16
-125.87
10
A
A
CYS
PRO
10
11
-138.47
10
A
A
SER
PRO
15
16
-139.22
11
A
A
CYS
PRO
10
11
-147.33
11
A
A
SER
PRO
15
16
-124.00
1
A
ARG
4
0.270
SIDE CHAIN
2
A
ARG
4
0.167
SIDE CHAIN
3
A
ARG
4
0.212
SIDE CHAIN
4
A
ARG
4
0.194
SIDE CHAIN
5
A
ARG
4
0.315
SIDE CHAIN
6
A
ARG
4
0.199
SIDE CHAIN
7
A
ARG
4
0.288
SIDE CHAIN
8
A
ARG
4
0.304
SIDE CHAIN
9
A
ARG
4
0.310
SIDE CHAIN
10
A
ARG
4
0.306
SIDE CHAIN
11
A
ARG
4
0.318
SIDE CHAIN
1
8.72
0.70
120.80
129.52
A
A
A
CB
CG
CD2
PHE
PHE
PHE
5
5
5
N
1
-10.49
0.70
120.80
110.31
A
A
A
CB
CG
CD1
PHE
PHE
PHE
5
5
5
N
1
-17.04
2.70
111.00
93.96
A
A
A
N
CA
C
PHE
PHE
PHE
5
5
5
N
1
-12.05
1.80
110.60
98.55
A
A
A
N
CA
CB
LYS
LYS
LYS
14
14
14
N
2
5.77
0.70
120.80
126.57
A
A
A
CB
CG
CD2
PHE
PHE
PHE
5
5
5
N
2
-8.10
0.70
120.80
112.70
A
A
A
CB
CG
CD1
PHE
PHE
PHE
5
5
5
N
2
-14.69
2.20
117.20
102.51
A
A
A
CA
C
N
VAL
VAL
LYS
6
6
7
Y
2
-20.45
2.70
111.00
90.55
A
A
A
N
CA
C
LYS
LYS
LYS
7
7
7
N
2
-10.94
1.80
110.60
99.66
A
A
A
N
CA
CB
LYS
LYS
LYS
14
14
14
N
2
21.42
2.70
111.00
132.42
A
A
A
N
CA
C
ALA
ALA
ALA
28
28
28
N
3
-10.06
0.70
120.80
110.74
A
A
A
CB
CG
CD2
PHE
PHE
PHE
5
5
5
N
3
8.81
0.70
120.80
129.61
A
A
A
CB
CG
CD1
PHE
PHE
PHE
5
5
5
N
3
12.74
1.10
114.20
126.94
A
A
A
CA
CB
SG
CYS
CYS
CYS
10
10
10
N
3
-12.61
1.80
110.60
97.99
A
A
A
N
CA
CB
LYS
LYS
LYS
14
14
14
N
3
10.16
1.10
114.20
124.36
A
A
A
CA
CB
SG
CYS
CYS
CYS
23
23
23
N
4
-12.27
0.70
120.80
108.53
A
A
A
CB
CG
CD2
PHE
PHE
PHE
5
5
5
N
4
11.64
0.70
120.80
132.44
A
A
A
CB
CG
CD1
PHE
PHE
PHE
5
5
5
N
4
-14.08
1.80
110.60
96.52
A
A
A
N
CA
CB
LYS
LYS
LYS
14
14
14
N
4
8.52
1.10
114.20
122.72
A
A
A
CA
CB
SG
CYS
CYS
CYS
26
26
26
N
4
21.07
2.70
111.00
132.07
A
A
A
N
CA
C
ALA
ALA
ALA
28
28
28
N
5
-9.85
0.70
120.80
110.95
A
A
A
CB
CG
CD2
PHE
PHE
PHE
5
5
5
N
5
7.68
0.70
120.80
128.48
A
A
A
CB
CG
CD1
PHE
PHE
PHE
5
5
5
N
5
-11.43
1.80
110.60
99.17
A
A
A
N
CA
CB
LYS
LYS
LYS
14
14
14
N
6
-10.79
0.70
120.80
110.01
A
A
A
CB
CG
CD2
PHE
PHE
PHE
5
5
5
N
6
8.00
0.70
120.80
128.80
A
A
A
CB
CG
CD1
PHE
PHE
PHE
5
5
5
N
6
-14.58
1.80
110.60
96.02
A
A
A
N
CA
CB
LYS
LYS
LYS
14
14
14
N
7
-7.85
0.70
120.80
112.95
A
A
A
CB
CG
CD2
PHE
PHE
PHE
5
5
5
N
7
5.19
0.70
120.80
125.99
A
A
A
CB
CG
CD1
PHE
PHE
PHE
5
5
5
N
7
-13.89
1.80
110.60
96.71
A
A
A
N
CA
CB
LYS
LYS
LYS
14
14
14
N
8
-9.23
1.50
110.90
101.67
A
A
A
CA
CB
CG1
VAL
VAL
VAL
6
6
6
N
8
-15.46
2.20
117.20
101.74
A
A
A
CA
C
N
VAL
VAL
LYS
6
6
7
Y
8
-16.22
2.70
111.00
94.78
A
A
A
N
CA
C
LYS
LYS
LYS
7
7
7
N
8
-12.98
1.80
110.60
97.62
A
A
A
N
CA
CB
LYS
LYS
LYS
14
14
14
N
8
7.81
1.10
114.20
122.01
A
A
A
CA
CB
SG
CYS
CYS
CYS
26
26
26
N
9
-17.20
2.40
113.90
96.70
A
A
A
CA
CB
CG
PHE
PHE
PHE
5
5
5
N
9
-9.83
0.70
120.80
110.97
A
A
A
CB
CG
CD2
PHE
PHE
PHE
5
5
5
N
9
7.30
0.70
120.80
128.10
A
A
A
CB
CG
CD1
PHE
PHE
PHE
5
5
5
N
9
-13.49
1.80
110.60
97.11
A
A
A
N
CA
CB
LYS
LYS
LYS
14
14
14
N
9
6.88
1.10
114.20
121.08
A
A
A
CA
CB
SG
CYS
CYS
CYS
26
26
26
N
10
-9.38
0.70
120.80
111.42
A
A
A
CB
CG
CD2
PHE
PHE
PHE
5
5
5
N
10
6.85
0.70
120.80
127.65
A
A
A
CB
CG
CD1
PHE
PHE
PHE
5
5
5
N
10
7.19
1.10
114.20
121.39
A
A
A
CA
CB
SG
CYS
CYS
CYS
13
13
13
N
10
-12.06
1.80
110.60
98.54
A
A
A
N
CA
CB
LYS
LYS
LYS
14
14
14
N
11
-9.42
0.70
120.80
111.38
A
A
A
CB
CG
CD2
PHE
PHE
PHE
5
5
5
N
11
6.78
0.70
120.80
127.58
A
A
A
CB
CG
CD1
PHE
PHE
PHE
5
5
5
N
1
A
ARG
4
-21.08
-64.13
1
A
LYS
7
3.79
64.09
1
A
LYS
14
49.82
76.09
1
A
PRO
16
-21.96
-41.28
1
A
GLN
18
-100.63
73.77
1
A
ASN
22
-8.99
99.06
1
A
CYS
23
-26.18
107.71
2
A
SER
2
-112.90
68.25
2
A
ASP
3
-114.70
69.51
2
A
LYS
7
-140.26
40.09
2
A
LYS
14
57.30
76.57
2
A
PRO
16
-27.44
-36.57
2
A
ASN
22
1.10
69.23
2
A
CYS
23
-1.84
127.73
2
A
VAL
25
-124.28
-59.38
3
A
ARG
4
96.00
-58.29
3
A
LYS
7
25.45
62.01
3
A
CYS
10
-49.38
91.60
3
A
LYS
14
-44.12
80.34
3
A
ASP
17
-150.13
86.80
3
A
ASP
21
-92.31
39.76
3
A
ASN
22
2.42
65.74
3
A
CYS
23
26.18
52.24
3
A
CYS
26
-123.77
-52.68
4
A
LYS
7
98.03
71.50
4
A
LYS
14
6.52
77.19
4
A
PRO
16
-15.45
-40.48
4
A
GLN
18
-100.94
65.96
4
A
ASN
22
64.94
124.64
4
A
CYS
23
-18.43
102.26
5
A
ARG
4
90.79
-63.22
5
A
PHE
5
-132.43
-149.15
5
A
LYS
7
85.17
89.53
5
A
LYS
14
52.57
87.83
5
A
PRO
16
-10.05
-56.59
5
A
GLN
18
-102.31
70.72
5
A
ASN
22
-8.69
82.62
5
A
CYS
23
-3.19
100.41
5
A
GLU
24
-101.46
41.06
5
A
VAL
25
-120.21
-58.17
6
A
ARG
4
-25.96
-66.77
6
A
LYS
7
101.54
86.01
6
A
LYS
14
21.73
75.17
6
A
PRO
16
-14.72
-49.54
6
A
ASN
22
12.21
74.92
6
A
CYS
23
16.79
91.72
7
A
SER
2
69.33
162.93
7
A
ARG
4
-24.16
-60.79
7
A
LYS
7
40.49
72.47
7
A
CYS
10
-50.65
96.39
7
A
LYS
14
-15.54
80.82
7
A
GLN
18
-105.19
77.97
7
A
ASN
22
22.16
62.16
7
A
CYS
23
11.40
96.24
7
A
GLU
24
-93.41
46.82
7
A
VAL
25
-126.69
-61.97
8
A
SER
2
-111.99
55.06
8
A
PHE
5
-113.84
73.45
8
A
LYS
7
128.02
39.59
8
A
LYS
14
2.04
83.97
8
A
PRO
16
-7.64
-56.36
8
A
ASN
22
8.15
67.73
8
A
CYS
23
10.51
88.39
8
A
GLU
24
-89.64
44.05
8
A
VAL
25
-128.57
-53.58
9
A
SER
2
106.10
69.30
9
A
ASP
3
-125.76
-154.43
9
A
ARG
4
-16.54
-60.82
9
A
LYS
7
107.12
87.12
9
A
LYS
14
-2.70
80.97
9
A
PRO
16
-33.86
-24.82
9
A
ASN
22
-29.70
94.12
9
A
CYS
23
-0.09
106.38
10
A
PHE
5
-136.37
-151.95
10
A
LYS
14
47.97
71.85
10
A
PRO
16
-16.82
-42.09
10
A
ASN
22
-19.51
89.05
10
A
CYS
23
-7.46
105.03
10
A
VAL
25
-122.03
-59.46
11
A
ASP
3
-152.18
53.79
11
A
PHE
5
-129.20
-154.70
11
A
LYS
7
25.94
68.27
11
A
LYS
14
-13.93
97.70
11
A
PRO
16
-20.68
-52.80
11
A
GLN
18
-100.29
74.33
11
A
CYS
23
127.35
126.82
11
A
VAL
25
-120.25
-50.66
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
METHIONYL-TRNA SYNTHETASE ZINC BINDING DOMAIN. 3D STRUCTURE AND HOMOLOGY WITH RUBREDOXIN AND GAG RETROVIRAL PROTEINS
1
Y
N
2
N
N
metalc
2.285
A
CYS
10
A
SG
CYS
10
1_555
A
ZN
29
B
ZN
ZN
1_555
metalc
2.302
A
CYS
13
A
SG
CYS
13
1_555
A
ZN
29
B
ZN
ZN
1_555
metalc
2.183
A
CYS
23
A
SG
CYS
23
1_555
A
ZN
29
B
ZN
ZN
1_555
metalc
2.297
A
CYS
26
A
SG
CYS
26
1_555
A
ZN
29
B
ZN
ZN
1_555
AMINOACYL-TRNA SYNTHASE
AMINOACYL-TRNA SYNTHASE
SYM_ECOLI
UNP
1
138
P00959
138
163
1MED
3
28
P00959
A
1
3
28
Unknown
4
BINDING SITE FOR RESIDUE ZN A 29
A
ZN
29
Software
4
A
CYS
10
A
CYS
10
4
1_555
A
CYS
13
A
CYS
13
4
1_555
A
CYS
23
A
CYS
23
4
1_555
A
CYS
26
A
CYS
26
4
1_555
A
CYS
10
A
CYS
10
4
1_555
A
CYS
13
A
CYS
13
4
1_555
A
CYS
23
A
CYS
23
4
1_555
A
CYS
26
A
CYS
26
4
1_555
1
P 1