0.014560 0.000000 0.000000 0.000000 0.014345 0.000000 0.000000 0.000000 0.008797 0.00000 0.00000 0.00000 Desmyter, A. Transue, T.R. Arbabi Gharoudi, M. Dao Thi, M. Poortmans, F. Hamers, R. Muyldermans, S. Wyns, L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 68.680 69.710 113.680 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat.Struct.Biol. NSBIEW 2024 1072-8368 3 803 811 10.1038/nsb0996-803 8784355 Crystal structure of a camel single-domain VH antibody fragment in complex with lysozyme. 1996 10.2210/pdb1mel/pdb pdb_00001mel 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 COLLIMATOR DIFFRACTOMETER 1996-05-02 ENRAF-NONIUS FAST GRAPHITE(002) M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE OTHER 15657.090 VH SINGLE-DOMAIN ANTIBODY 2 man polymer 14331.160 LYSOZYME 3.2.1.17 2 man polymer 18.015 water 33 nat water CAB-LYS3 COMPLEX no no DVQLQASGGGSVQAGGSLRLSCAASGYTIGPYCMGWFRQAPGKEREGVAAINMGGGITYYADSVKGRFTISQDNAKNTVY LLMNSLEPEDTAIYYCAADSTIYASYYECGHGLSTGGYGYDSWGQGTQVTVSSGRYPYDVPDYGSGRA DVQLQASGGGSVQAGGSLRLSCAASGYTIGPYCMGWFRQAPGKEREGVAAINMGGGITYYADSVKGRFTISQDNAKNTVY LLMNSLEPEDTAIYYCAADSTIYASYYECGHGLSTGGYGYDSWGQGTQVTVSSGRYPYDVPDYGSGRA A,B polypeptide(L) no no KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL L,M polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Arabian camel Camelus Escherichia sample ANTIBODY VH FRAGMENT CAB-LYS3 9838 Camelus dromedarius 562 Escherichia coli PHEN4 chicken Gallus EGG Escherichia sample PURCHASED FROM BOEHRINGER MANNHEIM ANTIBODY VH FRAGMENT CAB-LYS3 9031 Gallus gallus 562 Escherichia coli PHEN4 2 2.27 45. VAPOR DIFFUSION, HANGING DROP 6.4 HANGING DROP, pH 6.4, vapor diffusion - hanging drop diffrn_detector pdbx_unobs_or_zero_occ_residues database_2 pdbx_initial_refinement_model pdbx_unobs_or_zero_occ_residues repository Initial release Version format compliance Version format compliance Advisory Data collection Advisory Database references Refinement description 1 0 1997-06-16 1 1 2008-03-24 1 2 2011-07-13 1 3 2018-04-18 1 4 2023-08-09 _diffrn_detector.detector _database_2.pdbx_DOI _database_2.pdbx_database_accession Y BNL 1996-06-06 REL REL HOH water 1LYS PDB ENTRIES 1LYS AND 1IGM PDB experimental model 1IGM PDB ENTRIES 1LYS AND 1IGM PDB experimental model HOH 1 3 HOH HOH 149 A HOH 2 3 HOH HOH 150 A HOH 3 3 HOH HOH 151 A HOH 5 3 HOH HOH 152 A HOH 15 3 HOH HOH 153 A HOH 23 3 HOH HOH 154 A HOH 25 3 HOH HOH 155 A HOH 30 3 HOH HOH 156 A HOH 32 3 HOH HOH 157 A HOH 35 3 HOH HOH 158 A HOH 36 3 HOH HOH 159 A HOH 6 3 HOH HOH 149 B HOH 7 3 HOH HOH 150 B HOH 9 3 HOH HOH 151 B HOH 10 3 HOH HOH 152 B HOH 21 3 HOH HOH 153 B HOH 4 3 HOH HOH 130 L HOH 12 3 HOH HOH 131 L HOH 14 3 HOH HOH 132 L HOH 18 3 HOH HOH 133 L HOH 20 3 HOH HOH 134 L HOH 26 3 HOH HOH 135 L HOH 31 3 HOH HOH 136 L HOH 34 3 HOH HOH 137 L HOH 37 3 HOH HOH 138 L HOH 39 3 HOH HOH 139 L HOH 13 3 HOH HOH 130 M HOH 16 3 HOH HOH 131 M HOH 17 3 HOH HOH 132 M HOH 19 3 HOH HOH 133 M HOH 22 3 HOH HOH 134 M HOH 29 3 HOH HOH 135 M HOH 38 3 HOH HOH 136 M n 1 1 A VAL 2 n 2 VAL 2 A GLN 3 n 3 GLN 3 A LEU 4 n 4 LEU 4 A GLN 5 n 5 GLN 5 A ALA 6 n 6 ALA 6 A SER 7 n 7 SER 7 A GLY 8 n 8 GLY 8 A GLY 9 n 9 GLY 9 A GLY 10 n 10 GLY 10 A SER 11 n 11 SER 11 A VAL 12 n 12 VAL 12 A GLN 13 n 13 GLN 13 A ALA 14 n 14 ALA 14 A GLY 15 n 15 GLY 15 A GLY 16 n 16 GLY 16 A SER 17 n 17 SER 17 A LEU 18 n 18 LEU 18 A ARG 19 n 19 ARG 19 A LEU 20 n 20 LEU 20 A SER 21 n 21 SER 21 A CYS 22 n 22 CYS 22 A ALA 23 n 23 ALA 23 A ALA 24 n 24 ALA 24 A SER 25 n 25 SER 25 A GLY 26 n 26 GLY 26 A TYR 27 n 27 TYR 27 A THR 28 n 28 THR 28 A ILE 29 n 29 ILE 29 A GLY 30 n 30 GLY 30 A PRO 31 n 31 PRO 31 A TYR 32 n 32 TYR 32 A CYS 33 n 33 CYS 33 A MET 34 n 34 MET 34 A GLY 35 n 35 GLY 35 A TRP 36 n 36 TRP 36 A PHE 37 n 37 PHE 37 A ARG 38 n 38 ARG 38 A GLN 39 n 39 GLN 39 A ALA 40 n 40 ALA 40 A PRO 41 n 41 PRO 41 A GLY 42 n 42 GLY 42 A LYS 43 n 43 LYS 43 A GLU 44 n 44 GLU 44 A ARG 45 n 45 ARG 45 A GLU 46 n 46 GLU 46 A GLY 47 n 47 GLY 47 A VAL 48 n 48 VAL 48 A ALA 49 n 49 ALA 49 A ALA 50 n 50 ALA 50 A ILE 51 n 51 ILE 51 A ASN 52 n 52 ASN 52 A MET 53 n 53 MET 53 A GLY 54 n 54 GLY 54 A GLY 55 n 55 GLY 55 A GLY 56 n 56 GLY 56 A ILE 57 n 57 ILE 57 A THR 58 n 58 THR 58 A TYR 59 n 59 TYR 59 A TYR 60 n 60 TYR 60 A ALA 61 n 61 ALA 61 A ASP 62 n 62 ASP 62 A SER 63 n 63 SER 63 A VAL 64 n 64 VAL 64 A LYS 65 n 65 LYS 65 A GLY 66 n 66 GLY 66 A ARG 67 n 67 ARG 67 A PHE 68 n 68 PHE 68 A THR 69 n 69 THR 69 A ILE 70 n 70 ILE 70 A SER 71 n 71 SER 71 A GLN 72 n 72 GLN 72 A ASP 73 n 73 ASP 73 A ASN 74 n 74 ASN 74 A ALA 75 n 75 ALA 75 A LYS 76 n 76 LYS 76 A ASN 77 n 77 ASN 77 A THR 78 n 78 THR 78 A VAL 79 n 79 VAL 79 A TYR 80 n 80 TYR 80 A LEU 81 n 81 LEU 81 A LEU 82 n 82 LEU 82 A MET 83 n 83 MET 83 A ASN 84 n 84 ASN 84 A SER 85 n 85 SER 85 A LEU 86 n 86 LEU 86 A GLU 87 n 87 GLU 87 A PRO 88 n 88 PRO 88 A GLU 89 n 89 GLU 89 A ASP 90 n 90 ASP 90 A THR 91 n 91 THR 91 A ALA 92 n 92 ALA 92 A ILE 93 n 93 ILE 93 A TYR 94 n 94 TYR 94 A TYR 95 n 95 TYR 95 A CYS 96 n 96 CYS 96 A ALA 97 n 97 ALA 97 A ALA 98 n 98 ALA 98 A ASP 99 n 99 ASP 99 A SER 100 n 100 SER 100 A THR 101 n 101 THR 101 A ILE 102 n 102 ILE 102 A TYR 103 n 103 TYR 103 A ALA 104 n 104 ALA 104 A SER 105 n 105 SER 105 A TYR 106 n 106 TYR 106 A TYR 107 n 107 TYR 107 A GLU 108 n 108 GLU 108 A CYS 109 n 109 CYS 109 A GLY 110 n 110 GLY 110 A HIS 111 n 111 HIS 111 A GLY 112 n 112 GLY 112 A LEU 113 n 113 LEU 113 A SER 114 n 114 SER 114 A THR 115 n 115 THR 115 A GLY 116 n 116 GLY 116 A GLY 117 n 117 GLY 117 A TYR 118 n 118 TYR 118 A GLY 119 n 119 GLY 119 A TYR 120 n 120 TYR 120 A ASP 121 n 121 ASP 121 A SER 122 n 122 SER 122 A TRP 123 n 123 TRP 123 A GLY 124 n 124 GLY 124 A GLN 125 n 125 GLN 125 A GLY 126 n 126 GLY 126 A THR 127 n 127 THR 127 A GLN 128 n 128 GLN 128 A VAL 129 n 129 VAL 129 A THR 130 n 130 THR 130 A VAL 131 n 131 VAL 131 A SER 132 n 132 SER 132 A SER 133 n 133 SER 133 A n 134 134 A n 135 135 A n 136 136 A n 137 137 A n 138 138 A n 139 139 A n 140 140 A n 141 141 A n 142 142 A n 143 143 A n 144 144 A n 145 145 A n 146 146 A n 147 147 A n 148 148 A n 1 1 B VAL 2 n 2 VAL 2 B GLN 3 n 3 GLN 3 B LEU 4 n 4 LEU 4 B GLN 5 n 5 GLN 5 B ALA 6 n 6 ALA 6 B SER 7 n 7 SER 7 B GLY 8 n 8 GLY 8 B GLY 9 n 9 GLY 9 B GLY 10 n 10 GLY 10 B SER 11 n 11 SER 11 B VAL 12 n 12 VAL 12 B GLN 13 n 13 GLN 13 B ALA 14 n 14 ALA 14 B GLY 15 n 15 GLY 15 B GLY 16 n 16 GLY 16 B SER 17 n 17 SER 17 B LEU 18 n 18 LEU 18 B ARG 19 n 19 ARG 19 B LEU 20 n 20 LEU 20 B SER 21 n 21 SER 21 B CYS 22 n 22 CYS 22 B ALA 23 n 23 ALA 23 B ALA 24 n 24 ALA 24 B SER 25 n 25 SER 25 B GLY 26 n 26 GLY 26 B TYR 27 n 27 TYR 27 B THR 28 n 28 THR 28 B ILE 29 n 29 ILE 29 B GLY 30 n 30 GLY 30 B PRO 31 n 31 PRO 31 B TYR 32 n 32 TYR 32 B CYS 33 n 33 CYS 33 B MET 34 n 34 MET 34 B GLY 35 n 35 GLY 35 B TRP 36 n 36 TRP 36 B PHE 37 n 37 PHE 37 B ARG 38 n 38 ARG 38 B GLN 39 n 39 GLN 39 B ALA 40 n 40 ALA 40 B PRO 41 n 41 PRO 41 B GLY 42 n 42 GLY 42 B LYS 43 n 43 LYS 43 B GLU 44 n 44 GLU 44 B ARG 45 n 45 ARG 45 B GLU 46 n 46 GLU 46 B GLY 47 n 47 GLY 47 B VAL 48 n 48 VAL 48 B ALA 49 n 49 ALA 49 B ALA 50 n 50 ALA 50 B ILE 51 n 51 ILE 51 B ASN 52 n 52 ASN 52 B MET 53 n 53 MET 53 B GLY 54 n 54 GLY 54 B GLY 55 n 55 GLY 55 B GLY 56 n 56 GLY 56 B ILE 57 n 57 ILE 57 B THR 58 n 58 THR 58 B TYR 59 n 59 TYR 59 B TYR 60 n 60 TYR 60 B ALA 61 n 61 ALA 61 B ASP 62 n 62 ASP 62 B SER 63 n 63 SER 63 B VAL 64 n 64 VAL 64 B LYS 65 n 65 LYS 65 B GLY 66 n 66 GLY 66 B ARG 67 n 67 ARG 67 B PHE 68 n 68 PHE 68 B THR 69 n 69 THR 69 B ILE 70 n 70 ILE 70 B SER 71 n 71 SER 71 B GLN 72 n 72 GLN 72 B ASP 73 n 73 ASP 73 B ASN 74 n 74 ASN 74 B ALA 75 n 75 ALA 75 B LYS 76 n 76 LYS 76 B ASN 77 n 77 ASN 77 B THR 78 n 78 THR 78 B VAL 79 n 79 VAL 79 B TYR 80 n 80 TYR 80 B LEU 81 n 81 LEU 81 B LEU 82 n 82 LEU 82 B MET 83 n 83 MET 83 B ASN 84 n 84 ASN 84 B SER 85 n 85 SER 85 B LEU 86 n 86 LEU 86 B GLU 87 n 87 GLU 87 B PRO 88 n 88 PRO 88 B GLU 89 n 89 GLU 89 B ASP 90 n 90 ASP 90 B THR 91 n 91 THR 91 B ALA 92 n 92 ALA 92 B ILE 93 n 93 ILE 93 B TYR 94 n 94 TYR 94 B TYR 95 n 95 TYR 95 B CYS 96 n 96 CYS 96 B ALA 97 n 97 ALA 97 B ALA 98 n 98 ALA 98 B ASP 99 n 99 ASP 99 B SER 100 n 100 SER 100 B THR 101 n 101 THR 101 B ILE 102 n 102 ILE 102 B TYR 103 n 103 TYR 103 B ALA 104 n 104 ALA 104 B SER 105 n 105 SER 105 B TYR 106 n 106 TYR 106 B TYR 107 n 107 TYR 107 B GLU 108 n 108 GLU 108 B CYS 109 n 109 CYS 109 B GLY 110 n 110 GLY 110 B HIS 111 n 111 HIS 111 B GLY 112 n 112 GLY 112 B LEU 113 n 113 LEU 113 B SER 114 n 114 SER 114 B THR 115 n 115 THR 115 B GLY 116 n 116 GLY 116 B GLY 117 n 117 GLY 117 B TYR 118 n 118 TYR 118 B GLY 119 n 119 GLY 119 B TYR 120 n 120 TYR 120 B ASP 121 n 121 ASP 121 B SER 122 n 122 SER 122 B TRP 123 n 123 TRP 123 B GLY 124 n 124 GLY 124 B GLN 125 n 125 GLN 125 B GLY 126 n 126 GLY 126 B THR 127 n 127 THR 127 B GLN 128 n 128 GLN 128 B VAL 129 n 129 VAL 129 B THR 130 n 130 THR 130 B VAL 131 n 131 VAL 131 B SER 132 n 132 SER 132 B SER 133 n 133 SER 133 B n 134 134 B n 135 135 B n 136 136 B n 137 137 B n 138 138 B n 139 139 B n 140 140 B n 141 141 B n 142 142 B n 143 143 B n 144 144 B n 145 145 B n 146 146 B n 147 147 B n 148 148 B LYS 1 n 1 LYS 1 L VAL 2 n 2 VAL 2 L PHE 3 n 3 PHE 3 L GLY 4 n 4 GLY 4 L ARG 5 n 5 ARG 5 L CYS 6 n 6 CYS 6 L GLU 7 n 7 GLU 7 L LEU 8 n 8 LEU 8 L ALA 9 n 9 ALA 9 L ALA 10 n 10 ALA 10 L ALA 11 n 11 ALA 11 L MET 12 n 12 MET 12 L LYS 13 n 13 LYS 13 L ARG 14 n 14 ARG 14 L HIS 15 n 15 HIS 15 L GLY 16 n 16 GLY 16 L LEU 17 n 17 LEU 17 L ASP 18 n 18 ASP 18 L ASN 19 n 19 ASN 19 L TYR 20 n 20 TYR 20 L ARG 21 n 21 ARG 21 L GLY 22 n 22 GLY 22 L TYR 23 n 23 TYR 23 L SER 24 n 24 SER 24 L LEU 25 n 25 LEU 25 L GLY 26 n 26 GLY 26 L ASN 27 n 27 ASN 27 L TRP 28 n 28 TRP 28 L VAL 29 n 29 VAL 29 L CYS 30 n 30 CYS 30 L ALA 31 n 31 ALA 31 L ALA 32 n 32 ALA 32 L LYS 33 n 33 LYS 33 L PHE 34 n 34 PHE 34 L GLU 35 n 35 GLU 35 L SER 36 n 36 SER 36 L ASN 37 n 37 ASN 37 L PHE 38 n 38 PHE 38 L ASN 39 n 39 ASN 39 L THR 40 n 40 THR 40 L GLN 41 n 41 GLN 41 L ALA 42 n 42 ALA 42 L THR 43 n 43 THR 43 L ASN 44 n 44 ASN 44 L ARG 45 n 45 ARG 45 L ASN 46 n 46 ASN 46 L THR 47 n 47 THR 47 L ASP 48 n 48 ASP 48 L GLY 49 n 49 GLY 49 L SER 50 n 50 SER 50 L THR 51 n 51 THR 51 L ASP 52 n 52 ASP 52 L TYR 53 n 53 TYR 53 L GLY 54 n 54 GLY 54 L ILE 55 n 55 ILE 55 L LEU 56 n 56 LEU 56 L GLN 57 n 57 GLN 57 L ILE 58 n 58 ILE 58 L ASN 59 n 59 ASN 59 L SER 60 n 60 SER 60 L ARG 61 n 61 ARG 61 L TRP 62 n 62 TRP 62 L TRP 63 n 63 TRP 63 L CYS 64 n 64 CYS 64 L ASN 65 n 65 ASN 65 L ASP 66 n 66 ASP 66 L GLY 67 n 67 GLY 67 L ARG 68 n 68 ARG 68 L THR 69 n 69 THR 69 L PRO 70 n 70 PRO 70 L GLY 71 n 71 GLY 71 L SER 72 n 72 SER 72 L ARG 73 n 73 ARG 73 L ASN 74 n 74 ASN 74 L LEU 75 n 75 LEU 75 L CYS 76 n 76 CYS 76 L ASN 77 n 77 ASN 77 L ILE 78 n 78 ILE 78 L PRO 79 n 79 PRO 79 L CYS 80 n 80 CYS 80 L SER 81 n 81 SER 81 L ALA 82 n 82 ALA 82 L LEU 83 n 83 LEU 83 L LEU 84 n 84 LEU 84 L SER 85 n 85 SER 85 L SER 86 n 86 SER 86 L ASP 87 n 87 ASP 87 L ILE 88 n 88 ILE 88 L THR 89 n 89 THR 89 L ALA 90 n 90 ALA 90 L SER 91 n 91 SER 91 L VAL 92 n 92 VAL 92 L ASN 93 n 93 ASN 93 L CYS 94 n 94 CYS 94 L ALA 95 n 95 ALA 95 L LYS 96 n 96 LYS 96 L LYS 97 n 97 LYS 97 L ILE 98 n 98 ILE 98 L VAL 99 n 99 VAL 99 L SER 100 n 100 SER 100 L ASP 101 n 101 ASP 101 L GLY 102 n 102 GLY 102 L ASN 103 n 103 ASN 103 L GLY 104 n 104 GLY 104 L MET 105 n 105 MET 105 L ASN 106 n 106 ASN 106 L ALA 107 n 107 ALA 107 L TRP 108 n 108 TRP 108 L VAL 109 n 109 VAL 109 L ALA 110 n 110 ALA 110 L TRP 111 n 111 TRP 111 L ARG 112 n 112 ARG 112 L ASN 113 n 113 ASN 113 L ARG 114 n 114 ARG 114 L CYS 115 n 115 CYS 115 L LYS 116 n 116 LYS 116 L GLY 117 n 117 GLY 117 L THR 118 n 118 THR 118 L ASP 119 n 119 ASP 119 L VAL 120 n 120 VAL 120 L GLN 121 n 121 GLN 121 L ALA 122 n 122 ALA 122 L TRP 123 n 123 TRP 123 L ILE 124 n 124 ILE 124 L ARG 125 n 125 ARG 125 L GLY 126 n 126 GLY 126 L CYS 127 n 127 CYS 127 L n 128 128 L n 129 129 L LYS 1 n 1 LYS 1 M VAL 2 n 2 VAL 2 M PHE 3 n 3 PHE 3 M GLY 4 n 4 GLY 4 M ARG 5 n 5 ARG 5 M CYS 6 n 6 CYS 6 M GLU 7 n 7 GLU 7 M LEU 8 n 8 LEU 8 M ALA 9 n 9 ALA 9 M ALA 10 n 10 ALA 10 M ALA 11 n 11 ALA 11 M MET 12 n 12 MET 12 M LYS 13 n 13 LYS 13 M ARG 14 n 14 ARG 14 M HIS 15 n 15 HIS 15 M GLY 16 n 16 GLY 16 M LEU 17 n 17 LEU 17 M ASP 18 n 18 ASP 18 M ASN 19 n 19 ASN 19 M TYR 20 n 20 TYR 20 M ARG 21 n 21 ARG 21 M GLY 22 n 22 GLY 22 M TYR 23 n 23 TYR 23 M SER 24 n 24 SER 24 M LEU 25 n 25 LEU 25 M GLY 26 n 26 GLY 26 M ASN 27 n 27 ASN 27 M TRP 28 n 28 TRP 28 M VAL 29 n 29 VAL 29 M CYS 30 n 30 CYS 30 M ALA 31 n 31 ALA 31 M ALA 32 n 32 ALA 32 M LYS 33 n 33 LYS 33 M PHE 34 n 34 PHE 34 M GLU 35 n 35 GLU 35 M SER 36 n 36 SER 36 M ASN 37 n 37 ASN 37 M PHE 38 n 38 PHE 38 M ASN 39 n 39 ASN 39 M THR 40 n 40 THR 40 M GLN 41 n 41 GLN 41 M ALA 42 n 42 ALA 42 M THR 43 n 43 THR 43 M ASN 44 n 44 ASN 44 M ARG 45 n 45 ARG 45 M ASN 46 n 46 ASN 46 M THR 47 n 47 THR 47 M ASP 48 n 48 ASP 48 M GLY 49 n 49 GLY 49 M SER 50 n 50 SER 50 M THR 51 n 51 THR 51 M ASP 52 n 52 ASP 52 M TYR 53 n 53 TYR 53 M GLY 54 n 54 GLY 54 M ILE 55 n 55 ILE 55 M LEU 56 n 56 LEU 56 M GLN 57 n 57 GLN 57 M ILE 58 n 58 ILE 58 M ASN 59 n 59 ASN 59 M SER 60 n 60 SER 60 M ARG 61 n 61 ARG 61 M TRP 62 n 62 TRP 62 M TRP 63 n 63 TRP 63 M CYS 64 n 64 CYS 64 M ASN 65 n 65 ASN 65 M ASP 66 n 66 ASP 66 M GLY 67 n 67 GLY 67 M ARG 68 n 68 ARG 68 M THR 69 n 69 THR 69 M PRO 70 n 70 PRO 70 M GLY 71 n 71 GLY 71 M SER 72 n 72 SER 72 M ARG 73 n 73 ARG 73 M ASN 74 n 74 ASN 74 M LEU 75 n 75 LEU 75 M CYS 76 n 76 CYS 76 M ASN 77 n 77 ASN 77 M ILE 78 n 78 ILE 78 M PRO 79 n 79 PRO 79 M CYS 80 n 80 CYS 80 M SER 81 n 81 SER 81 M ALA 82 n 82 ALA 82 M LEU 83 n 83 LEU 83 M LEU 84 n 84 LEU 84 M SER 85 n 85 SER 85 M SER 86 n 86 SER 86 M ASP 87 n 87 ASP 87 M ILE 88 n 88 ILE 88 M THR 89 n 89 THR 89 M ALA 90 n 90 ALA 90 M SER 91 n 91 SER 91 M VAL 92 n 92 VAL 92 M ASN 93 n 93 ASN 93 M CYS 94 n 94 CYS 94 M ALA 95 n 95 ALA 95 M LYS 96 n 96 LYS 96 M LYS 97 n 97 LYS 97 M ILE 98 n 98 ILE 98 M VAL 99 n 99 VAL 99 M SER 100 n 100 SER 100 M ASP 101 n 101 ASP 101 M GLY 102 n 102 GLY 102 M ASN 103 n 103 ASN 103 M GLY 104 n 104 GLY 104 M MET 105 n 105 MET 105 M ASN 106 n 106 ASN 106 M ALA 107 n 107 ALA 107 M TRP 108 n 108 TRP 108 M VAL 109 n 109 VAL 109 M ALA 110 n 110 ALA 110 M TRP 111 n 111 TRP 111 M ARG 112 n 112 ARG 112 M ASN 113 n 113 ASN 113 M ARG 114 n 114 ARG 114 M CYS 115 n 115 CYS 115 M LYS 116 n 116 LYS 116 M GLY 117 n 117 GLY 117 M THR 118 n 118 THR 118 M ASP 119 n 119 ASP 119 M VAL 120 n 120 VAL 120 M GLN 121 n 121 GLN 121 M ALA 122 n 122 ALA 122 M TRP 123 n 123 TRP 123 M ILE 124 n 124 ILE 124 M ARG 125 n 125 ARG 125 M GLY 126 n 126 GLY 126 M CYS 127 n 127 CYS 127 M n 128 128 M n 129 129 M author_and_software_defined_assembly PISA 2 dimeric author_and_software_defined_assembly PISA 2 dimeric 1690 -7 10980 1510 -7 11290 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLN 3 A O GLN 3 A N SER 25 A N SER 25 A O LEU 18 A O LEU 18 A N MET 83 A N MET 83 A O THR 78 A O THR 78 A N ASN 74 A N ASN 74 A O GLY 10 A O GLY 10 A N THR 130 A N THR 130 A O THR 127 A O THR 127 A N TYR 94 A N TYR 94 A O ILE 93 A O ILE 93 A N GLN 39 A N GLN 39 A O MET 34 A O MET 34 A N ILE 51 A N ILE 51 A O ALA 50 A O ALA 50 A N TYR 59 A N TYR 59 B O GLN 3 B O GLN 3 B N SER 25 B N SER 25 B O LEU 18 B O LEU 18 B N MET 83 B N MET 83 B O THR 78 B O THR 78 B N ASP 73 B N ASP 73 B O GLY 10 B O GLY 10 B N THR 130 B N THR 130 B O THR 127 B O THR 127 B N TYR 94 B N TYR 94 B O ILE 93 B O ILE 93 B N GLN 39 B N GLN 39 B O MET 34 B O MET 34 B N ILE 51 B N ILE 51 B O ALA 50 B O ALA 50 B N TYR 59 B N TYR 59 L O ASN 44 C O ASN 44 L N ASP 52 C N ASP 52 M O ASN 44 D O ASN 44 M N ASP 52 D N ASP 52 1 A ASP 1 A ASP 1 1 Y 1 A ASP 73 A ASP 73 0 Y 1 A ASN 74 A ASN 74 0 Y 1 A ALA 75 A ALA 75 0 Y 1 A LYS 76 A LYS 76 0 Y 1 A ASN 77 A ASN 77 0 Y 1 A GLY 134 A GLY 134 1 Y 1 A ARG 135 A ARG 135 1 Y 1 A TYR 136 A TYR 136 1 Y 1 A PRO 137 A PRO 137 1 Y 1 A TYR 138 A TYR 138 1 Y 1 A ASP 139 A ASP 139 1 Y 1 A VAL 140 A VAL 140 1 Y 1 A PRO 141 A PRO 141 1 Y 1 A ASP 142 A ASP 142 1 Y 1 A TYR 143 A TYR 143 1 Y 1 A GLY 144 A GLY 144 1 Y 1 A SER 145 A SER 145 1 Y 1 A GLY 146 A GLY 146 1 Y 1 A ARG 147 A ARG 147 1 Y 1 A ALA 148 A ALA 148 1 Y 1 B ASP 1 B ASP 1 1 Y 1 B ASP 73 B ASP 73 0 Y 1 B ASN 74 B ASN 74 0 Y 1 B ALA 75 B ALA 75 0 Y 1 B LYS 76 B LYS 76 0 Y 1 B ASN 77 B ASN 77 0 Y 1 B GLY 134 B GLY 134 1 Y 1 B ARG 135 B ARG 135 1 Y 1 B TYR 136 B TYR 136 1 Y 1 B PRO 137 B PRO 137 1 Y 1 B TYR 138 B TYR 138 1 Y 1 B ASP 139 B ASP 139 1 Y 1 B VAL 140 B VAL 140 1 Y 1 B PRO 141 B PRO 141 1 Y 1 B ASP 142 B ASP 142 1 Y 1 B TYR 143 B TYR 143 1 Y 1 B GLY 144 B GLY 144 1 Y 1 B SER 145 B SER 145 1 Y 1 B GLY 146 B GLY 146 1 Y 1 B ARG 147 B ARG 147 1 Y 1 B ALA 148 B ALA 148 1 Y 1 L ARG 128 C ARG 128 1 Y 1 L LEU 129 C LEU 129 1 Y 1 M ARG 128 D ARG 128 1 Y 1 M LEU 129 D LEU 129 1 Y 1 A ASN 74 65.06 -122.36 1 A ALA 75 46.48 -110.59 1 A LYS 76 -92.82 55.64 1 A ALA 92 178.81 175.40 1 A THR 115 -115.49 50.26 1 B ASP 73 -152.87 74.73 1 B SER 85 39.55 63.03 1 B ALA 92 174.23 174.72 1 B THR 115 -84.92 31.48 1 L GLN 57 30.55 58.22 1 L ILE 88 -60.27 2.67 1 L CYS 115 -136.02 -38.98 1 M SER 36 -140.24 -23.44 1 M PHE 38 81.07 4.93 1 M SER 100 -65.82 -167.39 1 M ASP 101 54.79 15.85 16.7 RESIDUES ASP B 73 - LYS B 76 WERE LEFT IN THE MODEL TO CONSTRAIN RESIDUES 72 AND 77. 0.323 0.221 0.221 2.5 10. 17081 10.0 89.4 1 0. MOLECULAR REPLACEMENT PDB ENTRIES 1LYS AND 1IGM 2.5 10. 33 3945 0 0 3912 0.013 1.8 24.04 1.433 2.5 10. 1MEL 17829 0.0 0.114 0.114 1 6.1 5.4 93.4 0.42 2.50 2.56 1.8 3.2 84.8 data collection MADNES data scaling SCALA (CCP4) model building X-PLOR 3.1 refinement X-PLOR 3.1 data reduction MADNES data scaling CCP4 (SCALA) phasing X-PLOR 3.1 CRYSTAL STRUCTURE OF A CAMEL SINGLE-DOMAIN VH ANTIBODY FRAGMENT IN COMPLEX WITH LYSOZYME 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N THE ASYMMETRIC UNIT CONTAINS TWO INDEPENDENTLY REFINED COMPLEXES: ANTIBODY A WITH LYSOZYME L AND ANTIBODY B WITH LYSOZYME M. SUBTLE DIFFERENCES BETWEEN THE TWO COMPLEXES HAVE BEEN OBSERVED, BUT HAVE NOT YET BEEN CAREFULLY ANALYZED. A PRO 88 A PRO 88 HELX_P A ASP 90 A ASP 90 5 1 3 A GLY 110 A GLY 110 HELX_P A SER 114 A SER 114 1 2 5 B PRO 88 B PRO 88 HELX_P B ASP 90 B ASP 90 5 3 3 B CYS 109 B CYS 109 HELX_P B SER 114 B SER 114 1 4 6 L ARG 5 C ARG 5 HELX_P L ARG 14 C ARG 14 1 5 10 L TYR 20 C TYR 20 HELX_P L GLY 22 C GLY 22 5 6 3 L LEU 25 C LEU 25 HELX_P L SER 36 C SER 36 1 7 12 L CYS 80 C CYS 80 HELX_P L LEU 83 C LEU 83 5 8 4 L THR 89 C THR 89 HELX_P L SER 100 C SER 100 1 9 12 L MET 105 C MET 105 HELX_P L ALA 107 C ALA 107 5 10 3 L VAL 109 C VAL 109 HELX_P L ARG 114 C ARG 114 1 11 6 L VAL 120 C VAL 120 HELX_P L TRP 123 C TRP 123 5 12 4 M ARG 5 D ARG 5 HELX_P M ARG 14 D ARG 14 1 13 10 M TYR 20 D TYR 20 HELX_P M GLY 22 D GLY 22 5 14 3 M LEU 25 D LEU 25 HELX_P M GLU 35 D GLU 35 1 15 11 M CYS 80 D CYS 80 HELX_P M LEU 84 D LEU 84 5 16 5 M THR 89 D THR 89 HELX_P M VAL 99 D VAL 99 1 17 11 M MET 105 D MET 105 HELX_P M ALA 107 D ALA 107 5 18 3 M VAL 109 D VAL 109 HELX_P M ARG 114 D ARG 114 1 19 6 M VAL 120 D VAL 120 HELX_P M TRP 123 D TRP 123 5 20 4 disulf 2.001 A CYS 22 A SG CYS 22 1_555 A CYS 96 A SG CYS 96 1_555 disulf 2.010 A CYS 33 A SG CYS 33 1_555 A CYS 109 A SG CYS 109 1_555 disulf 2.019 B CYS 22 B SG CYS 22 1_555 B CYS 96 B SG CYS 96 1_555 disulf 2.018 B CYS 33 B SG CYS 33 1_555 B CYS 109 B SG CYS 109 1_555 disulf 2.027 L CYS 6 C SG CYS 6 1_555 L CYS 127 C SG CYS 127 1_555 disulf 2.018 L CYS 30 C SG CYS 30 1_555 L CYS 115 C SG CYS 115 1_555 disulf 2.025 L CYS 64 C SG CYS 64 1_555 L CYS 80 C SG CYS 80 1_555 disulf 2.015 L CYS 76 C SG CYS 76 1_555 L CYS 94 C SG CYS 94 1_555 disulf 2.015 M CYS 6 D SG CYS 6 1_555 M CYS 127 D SG CYS 127 1_555 disulf 2.024 M CYS 30 D SG CYS 30 1_555 M CYS 115 D SG CYS 115 1_555 disulf 1.990 M CYS 64 D SG CYS 64 1_555 M CYS 80 D SG CYS 80 1_555 disulf 2.021 M CYS 76 D SG CYS 76 1_555 M CYS 94 D SG CYS 94 1_555 COMPLEX (ANTIBODY/ANTIGEN) CAMEL SINGLE-DOMAIN ANTI-LYSOZYME, COMPLEX (ANTIBODY-ANTIGEN), COMPLEX (ANTIBODY-ANTIGEN) complex A GLY 30 A GLY 30 1 A PRO 31 A PRO 31 -0.01 B GLY 30 B GLY 30 1 B PRO 31 B PRO 31 0.55 given -0.533000 -0.155000 -0.832000 0.170000 -0.983000 0.075000 -0.829000 -0.102000 0.550000 82.60300 57.00300 32.34900 given -0.647000 -0.198000 -0.736000 0.200000 -0.976000 0.086000 -0.735000 -0.092000 0.671000 84.29800 56.04100 28.82600 LYSC_CHICK UNP 2 1 P00698 MRSLLILVLCFLPLAALGKVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRW WCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL 1MEL PDB 1 1MEL 19 147 1MEL 1 129 P00698 L 1 1 129 19 147 1MEL 1 129 P00698 M 1 1 129 1 148 1MEL 1 148 1MEL A 2 1 148 1 148 1MEL 1 148 1MEL B 2 1 148 4 6 4 6 2 2 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLN 3 A GLN 3 A SER 7 A SER 7 A LEU 18 A LEU 18 A SER 25 A SER 25 A THR 78 A THR 78 A MET 83 A MET 83 A PHE 68 A PHE 68 A ASN 74 A ASN 74 A GLY 10 A GLY 10 A GLN 13 A GLN 13 A THR 127 A THR 127 A SER 132 A SER 132 A ALA 92 A ALA 92 A ASP 99 A ASP 99 A CYS 33 A CYS 33 A GLN 39 A GLN 39 A GLU 46 A GLU 46 A ASN 52 A ASN 52 A THR 58 A THR 58 A TYR 60 A TYR 60 B GLN 3 B GLN 3 B SER 7 B SER 7 B LEU 18 B LEU 18 B SER 25 B SER 25 B THR 78 B THR 78 B MET 83 B MET 83 B PHE 68 B PHE 68 B ASP 73 B ASP 73 B GLY 10 B GLY 10 B VAL 12 B VAL 12 B THR 127 B THR 127 B VAL 131 B VAL 131 B ALA 92 B ALA 92 B ASP 99 B ASP 99 B CYS 33 B CYS 33 B GLN 39 B GLN 39 B GLU 46 B GLU 46 B ASN 52 B ASN 52 B THR 58 B THR 58 B TYR 60 B TYR 60 L THR 43 C THR 43 L ARG 45 C ARG 45 L THR 51 C THR 51 L TYR 53 C TYR 53 M THR 43 D THR 43 M ARG 45 D ARG 45 M THR 51 D THR 51 M TYR 53 D TYR 53 19 P 21 21 21