0.021142 0.000000 0.000000 0.000000 0.007734 0.000000 0.000000 0.000000 0.012516 0.00000 0.00000 0.00000 CIS PROLINE - PRO L 144 CIS PROLINE - PRO H 402 CIS PROLINE - PRO H 404 CIS PROLINE - PRO H 444 Zdanov, A. Cygler, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 47.300 129.300 79.900 C6 H12 O4 148.157 alpha-D-Abequopyranose D-saccharide, alpha linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H12 O6 180.156 alpha-D-galactopyranose D-saccharide, alpha linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C7 H14 O6 194.182 n methyl alpha-D-mannopyranoside D-saccharide C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 33 5183 5192 10.1021/bi00183a023 8172893 Solution structure of a trisaccharide-antibody complex: comparison of NMR measurements with a crystal structure. 1994 US Science SCIEAS 0038 0036-8075 253 442 Recognition of a Cell-Surface Oligo-Saccharide of Pathogenic Salmonella by an Antibody Fab Fragment 1991 PRO H 291 HAS WRONG CHIRALITY AT ATOM CA 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 23125.619 IGG1-LAMBDA SE155-4 FAB (LIGHT CHAIN) 1 man polymer 23570.480 IGG1-LAMBDA SE155-4 FAB (HEAVY CHAIN) 1 man polymer 486.465 alpha-D-galactopyranose-(1-2)-[alpha-D-Abequopyranose-(1-3)]methyl alpha-D-mannopyranoside 1 man branched 18.015 water 85 nat water no no QAVVTQESALTTSPGETVTLTCRSSTGTVTSGNHANWVQEKPDHLFTGLIGDTNNRAPGVPARFSGSLIGDKAALTITGA QPEDEAIYFCALWCNNHWIFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQ GMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLSRADCS QAVVTQESALTTSPGETVTLTCRSSTGTVTSGNHANWVQEKPDHLFTGLIGDTNNRAPGVPARFSGSLIGDKAALTITGA QPEDEAIYFCALWCNNHWIFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQ GMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLSRADCS L polypeptide(L) no no EVQVQQSGTVLARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTITAY MELSSLTNEDSAVYYCTRGGHGYYGDYWGQGASLTVSSAKTTPPSVYPLAPGSAAQTDSMVTLGCLVKGYFPEPVTVTWN SGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRC EVQVQQSGTVLARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTITAY MELSSLTNEDSAVYYCTRGGHGYYGDYWGQGASLTVSSAKTTPPSVYPLAPGSAAQTDSMVTLGCLVKGYFPEPVTVTWN SGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRC H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse sample 10090 Mus musculus house mouse sample 10090 Mus musculus 2.61 52.96 atom_site chem_comp database_PDB_caveat entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_database_status pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen struct_asym struct_conn struct_ref_seq_dif struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Version format compliance Advisory Atomic model Data collection Database references Derived calculations Other Structure summary 1 0 1994-01-31 1 1 2008-03-24 1 2 2011-07-13 2 0 2020-07-29 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _pdbx_database_status.process_site _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_ref_seq_dif.details MMA 502 n A MMA 1 GAL 501 n A GLA 2 ABE 503 n A ABE 3 DAbea a-D-Abequopyranose a-D-3-deoxy-Fucp Abe DGalpa a-D-galactopyranose a-D-Galp Gal DManp[1Me]a 1-methyl-a-D-mannopyranose o1-methyl-mannose Y BNL 1993-10-25 REL oligosaccharide DGalpa1-2[DAbea1-3]DManp[1Me]a1-OME 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/3,3,2/[a1122h-1a_1-5_1*OC][a2112h-1a_1-5][a2d12m-1a_1-5]/1-2-3/a2-b1_a3-c1 3 PDB2Glycan 1.1.0 WURCS [][methyl]{[(1+1)][a-D-Manp]{[(2+1)][a-D-Galp]{}[(3+1)][a-D-3-deoxy-Fucp]{}}} 3 PDB-CARE LINUCS C1 O2 GLA MMA 2 1 3 O1 HO2 sing C1 O3 ABE MMA 3 1 3 O1 HO3 sing n n n HOH water HOH 603 4 HOH HOH 603 L HOH 608 4 HOH HOH 608 L HOH 609 4 HOH HOH 609 L HOH 610 4 HOH HOH 610 L HOH 611 4 HOH HOH 611 L HOH 612 4 HOH HOH 612 L HOH 613 4 HOH HOH 613 L HOH 614 4 HOH HOH 614 L HOH 615 4 HOH HOH 615 L HOH 618 4 HOH HOH 618 L HOH 619 4 HOH HOH 619 L HOH 621 4 HOH HOH 621 L HOH 624 4 HOH HOH 624 L HOH 625 4 HOH HOH 625 L HOH 627 4 HOH HOH 627 L HOH 628 4 HOH HOH 628 L HOH 631 4 HOH HOH 631 L HOH 632 4 HOH HOH 632 L HOH 634 4 HOH HOH 634 L HOH 636 4 HOH HOH 636 L HOH 638 4 HOH HOH 638 L HOH 639 4 HOH HOH 639 L HOH 640 4 HOH HOH 640 L HOH 642 4 HOH HOH 642 L HOH 643 4 HOH HOH 643 L HOH 648 4 HOH HOH 648 L HOH 650 4 HOH HOH 650 L HOH 651 4 HOH HOH 651 L HOH 653 4 HOH HOH 653 L HOH 654 4 HOH HOH 654 L HOH 655 4 HOH HOH 655 L HOH 658 4 HOH HOH 658 L HOH 659 4 HOH HOH 659 L HOH 661 4 HOH HOH 661 L HOH 662 4 HOH HOH 662 L HOH 664 4 HOH HOH 664 L HOH 665 4 HOH HOH 665 L HOH 668 4 HOH HOH 668 L HOH 671 4 HOH HOH 671 L HOH 673 4 HOH HOH 673 L HOH 674 4 HOH HOH 674 L HOH 675 4 HOH HOH 675 L HOH 678 4 HOH HOH 678 L HOH 680 4 HOH HOH 680 L HOH 683 4 HOH HOH 683 L HOH 685 4 HOH HOH 685 L HOH 686 4 HOH HOH 686 L HOH 690 4 HOH HOH 690 L HOH 691 4 HOH HOH 691 L HOH 692 4 HOH HOH 692 L HOH 694 4 HOH HOH 694 L HOH 601 4 HOH HOH 601 H HOH 602 4 HOH HOH 602 H HOH 604 4 HOH HOH 604 H HOH 605 4 HOH HOH 605 H HOH 606 4 HOH HOH 606 H HOH 616 4 HOH HOH 616 H HOH 620 4 HOH HOH 620 H HOH 622 4 HOH HOH 622 H HOH 623 4 HOH HOH 623 H HOH 629 4 HOH HOH 629 H HOH 630 4 HOH HOH 630 H HOH 633 4 HOH HOH 633 H HOH 635 4 HOH HOH 635 H HOH 641 4 HOH HOH 641 H HOH 644 4 HOH HOH 644 H HOH 645 4 HOH HOH 645 H HOH 647 4 HOH HOH 647 H HOH 649 4 HOH HOH 649 H HOH 656 4 HOH HOH 656 H HOH 660 4 HOH HOH 660 H HOH 663 4 HOH HOH 663 H HOH 666 4 HOH HOH 666 H HOH 667 4 HOH HOH 667 H HOH 669 4 HOH HOH 669 H HOH 670 4 HOH HOH 670 H HOH 672 4 HOH HOH 672 H HOH 677 4 HOH HOH 677 H HOH 679 4 HOH HOH 679 H HOH 681 4 HOH HOH 681 H HOH 682 4 HOH HOH 682 H HOH 684 4 HOH HOH 684 H HOH 687 4 HOH HOH 687 H HOH 688 4 HOH HOH 688 H HOH 695 4 HOH HOH 695 H GLN 1 n 1 GLN 1 L ALA 2 n 2 ALA 2 L VAL 3 n 3 VAL 3 L VAL 4 n 4 VAL 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L GLU 7 n 7 GLU 7 L SER 8 n 8 SER 8 L ALA 9 n 9 ALA 9 L LEU 10 n 10 LEU 10 L THR 11 n 11 THR 11 L THR 12 n 12 THR 12 L SER 13 n 13 SER 13 L PRO 14 n 14 PRO 14 L GLY 15 n 15 GLY 15 L GLU 16 n 16 GLU 16 L THR 17 n 17 THR 17 L VAL 18 n 18 VAL 18 L THR 19 n 19 THR 19 L LEU 20 n 20 LEU 20 L THR 21 n 21 THR 21 L CYS 22 n 22 CYS 22 L ARG 23 n 23 ARG 23 L SER 24 n 24 SER 24 L SER 25 n 25 SER 25 L THR 26 n 26 THR 26 L GLY 27 n 27 GLY 27 L THR 28 n 28 THR 28 L VAL 29 n 29 VAL 29 L THR 30 n 30 THR 30 L SER 31 n 31 SER 31 L GLY 32 n 32 GLY 32 L ASN 33 n 33 ASN 33 L HIS 34 n 34 HIS 34 L ALA 35 n 35 ALA 35 L ASN 36 n 36 ASN 36 L TRP 37 n 37 TRP 37 L VAL 38 n 38 VAL 38 L GLN 39 n 39 GLN 39 L GLU 40 n 40 GLU 40 L LYS 41 n 41 LYS 41 L PRO 42 n 42 PRO 42 L ASP 43 n 43 ASP 43 L HIS 44 n 44 HIS 44 L LEU 45 n 45 LEU 45 L PHE 46 n 46 PHE 46 L THR 47 n 47 THR 47 L GLY 48 n 48 GLY 48 L LEU 49 n 49 LEU 49 L ILE 50 n 50 ILE 50 L GLY 51 n 51 GLY 51 L ASP 52 n 52 ASP 52 L THR 53 n 53 THR 53 L ASN 54 n 54 ASN 54 L ASN 55 n 55 ASN 55 L ARG 56 n 56 ARG 56 L ALA 57 n 57 ALA 57 L PRO 58 n 58 PRO 58 L GLY 59 n 59 GLY 59 L VAL 60 n 60 VAL 60 L PRO 61 n 61 PRO 61 L ALA 62 n 62 ALA 62 L ARG 63 n 63 ARG 63 L PHE 64 n 64 PHE 64 L SER 65 n 65 SER 65 L GLY 66 n 66 GLY 66 L SER 67 n 67 SER 67 L LEU 68 n 68 LEU 68 L ILE 69 n 69 ILE 69 L GLY 70 n 70 GLY 70 L ASP 71 n 71 ASP 71 L LYS 72 n 72 LYS 72 L ALA 73 n 73 ALA 73 L ALA 74 n 74 ALA 74 L LEU 75 n 75 LEU 75 L THR 76 n 76 THR 76 L ILE 77 n 77 ILE 77 L THR 78 n 78 THR 78 L GLY 79 n 79 GLY 79 L ALA 80 n 80 ALA 80 L GLN 81 n 81 GLN 81 L PRO 82 n 82 PRO 82 L GLU 83 n 83 GLU 83 L ASP 84 n 84 ASP 84 L GLU 85 n 85 GLU 85 L ALA 86 n 86 ALA 86 L ILE 87 n 87 ILE 87 L TYR 88 n 88 TYR 88 L PHE 89 n 89 PHE 89 L CYS 90 n 90 CYS 90 L ALA 91 n 91 ALA 91 L LEU 92 n 92 LEU 92 L TRP 93 n 93 TRP 93 L CYS 94 n 94 CYS 94 L ASN 95 n 95 ASN 95 L ASN 96 n 96 ASN 96 L HIS 97 n 97 HIS 97 L TRP 98 n 98 TRP 98 L ILE 99 n 99 ILE 99 L PHE 100 n 100 PHE 100 L GLY 101 n 101 GLY 101 L GLY 102 n 102 GLY 102 L GLY 103 n 103 GLY 103 L THR 104 n 104 THR 104 L LYS 105 n 105 LYS 105 L LEU 106 n 106 LEU 106 L THR 107 n 107 THR 107 L VAL 108 n 108 VAL 108 L LEU 109 n 109 LEU 109 L GLY 110 n 110 GLY 110 L GLN 111 n 111 GLN 111 L PRO 112 n 112 PRO 112 L LYS 113 n 113 LYS 113 L SER 114 n 114 SER 114 L SER 115 n 115 SER 115 L PRO 116 n 116 PRO 116 L SER 117 n 117 SER 117 L VAL 118 n 118 VAL 118 L THR 119 n 119 THR 119 L LEU 120 n 120 LEU 120 L PHE 121 n 121 PHE 121 L PRO 122 n 122 PRO 122 L PRO 123 n 123 PRO 123 L SER 124 n 124 SER 124 L SER 125 n 125 SER 125 L GLU 126 n 126 GLU 126 L GLU 127 n 127 GLU 127 L LEU 128 n 128 LEU 128 L GLU 129 n 129 GLU 129 L THR 130 n 130 THR 130 L ASN 131 n 131 ASN 131 L LYS 132 n 132 LYS 132 L ALA 133 n 133 ALA 133 L THR 134 n 134 THR 134 L LEU 135 n 135 LEU 135 L VAL 136 n 136 VAL 136 L CYS 137 n 137 CYS 137 L THR 138 n 138 THR 138 L ILE 139 n 139 ILE 139 L THR 140 n 140 THR 140 L ASP 141 n 141 ASP 141 L PHE 142 n 142 PHE 142 L TYR 143 n 143 TYR 143 L PRO 144 n 144 PRO 144 L GLY 145 n 145 GLY 145 L VAL 146 n 146 VAL 146 L VAL 147 n 147 VAL 147 L THR 148 n 148 THR 148 L VAL 149 n 149 VAL 149 L ASP 150 n 150 ASP 150 L TRP 151 n 151 TRP 151 L LYS 152 n 152 LYS 152 L VAL 153 n 153 VAL 153 L ASP 154 n 154 ASP 154 L GLY 155 n 155 GLY 155 L THR 156 n 156 THR 156 L PRO 157 n 157 PRO 157 L VAL 158 n 158 VAL 158 L THR 159 n 159 THR 159 L GLN 160 n 160 GLN 160 L GLY 161 n 161 GLY 161 L MET 162 n 162 MET 162 L GLU 163 n 163 GLU 163 L THR 164 n 164 THR 164 L THR 165 n 165 THR 165 L GLN 166 n 166 GLN 166 L PRO 167 n 167 PRO 167 L SER 168 n 168 SER 168 L LYS 169 n 169 LYS 169 L GLN 170 n 170 GLN 170 L SER 171 n 171 SER 171 L ASN 172 n 172 ASN 172 L ASN 173 n 173 ASN 173 L LYS 174 n 174 LYS 174 L TYR 175 n 175 TYR 175 L MET 176 n 176 MET 176 L ALA 177 n 177 ALA 177 L SER 178 n 178 SER 178 L SER 179 n 179 SER 179 L TYR 180 n 180 TYR 180 L LEU 181 n 181 LEU 181 L THR 182 n 182 THR 182 L LEU 183 n 183 LEU 183 L THR 184 n 184 THR 184 L ALA 185 n 185 ALA 185 L ARG 186 n 186 ARG 186 L ALA 187 n 187 ALA 187 L TRP 188 n 188 TRP 188 L GLU 189 n 189 GLU 189 L ARG 190 n 190 ARG 190 L HIS 191 n 191 HIS 191 L SER 192 n 192 SER 192 L SER 193 n 193 SER 193 L TYR 194 n 194 TYR 194 L SER 195 n 195 SER 195 L CYS 196 n 196 CYS 196 L GLN 197 n 197 GLN 197 L VAL 198 n 198 VAL 198 L THR 199 n 199 THR 199 L HIS 200 n 200 HIS 200 L GLU 201 n 201 GLU 201 L GLY 202 n 202 GLY 202 L HIS 203 n 203 HIS 203 L THR 204 n 204 THR 204 L VAL 205 n 205 VAL 205 L GLU 206 n 206 GLU 206 L LYS 207 n 207 LYS 207 L SER 208 n 208 SER 208 L LEU 209 n 209 LEU 209 L SER 210 n 210 SER 210 L ARG 211 n 211 ARG 211 L ALA 212 n 212 ALA 212 L n 213 213 L n 214 214 L n 215 215 L GLU 251 n 1 GLU 251 H VAL 252 n 2 VAL 252 H GLN 253 n 3 GLN 253 H VAL 254 n 4 VAL 254 H GLN 255 n 5 GLN 255 H GLN 256 n 6 GLN 256 H SER 257 n 7 SER 257 H GLY 258 n 8 GLY 258 H THR 259 n 9 THR 259 H VAL 260 n 10 VAL 260 H LEU 261 n 11 LEU 261 H ALA 262 n 12 ALA 262 H ARG 263 n 13 ARG 263 H PRO 264 n 14 PRO 264 H GLY 265 n 15 GLY 265 H ALA 266 n 16 ALA 266 H SER 267 n 17 SER 267 H VAL 268 n 18 VAL 268 H LYS 269 n 19 LYS 269 H MET 270 n 20 MET 270 H SER 271 n 21 SER 271 H CYS 272 n 22 CYS 272 H LYS 273 n 23 LYS 273 H ALA 274 n 24 ALA 274 H SER 275 n 25 SER 275 H GLY 276 n 26 GLY 276 H TYR 277 n 27 TYR 277 H THR 278 n 28 THR 278 H PHE 279 n 29 PHE 279 H THR 280 n 30 THR 280 H ASN 281 n 31 ASN 281 H TYR 282 n 32 TYR 282 H TRP 283 n 33 TRP 283 H MET 284 n 34 MET 284 H HIS 285 n 35 HIS 285 H TRP 286 n 36 TRP 286 H ILE 287 n 37 ILE 287 H LYS 288 n 38 LYS 288 H GLN 289 n 39 GLN 289 H ARG 290 n 40 ARG 290 H PRO 291 n 41 PRO 291 H GLY 292 n 42 GLY 292 H GLN 293 n 43 GLN 293 H GLY 294 n 44 GLY 294 H LEU 295 n 45 LEU 295 H GLU 296 n 46 GLU 296 H TRP 297 n 47 TRP 297 H ILE 298 n 48 ILE 298 H GLY 299 n 49 GLY 299 H ALA 300 n 50 ALA 300 H ILE 301 n 51 ILE 301 H TYR 302 n 52 TYR 302 H PRO 303 n 53 PRO 303 H GLY 304 n 54 GLY 304 H ASN 305 n 55 ASN 305 H SER 306 n 56 SER 306 H ALA 307 n 57 ALA 307 H THR 308 n 58 THR 308 H PHE 309 n 59 PHE 309 H TYR 310 n 60 TYR 310 H ASN 311 n 61 ASN 311 H HIS 312 n 62 HIS 312 H LYS 313 n 63 LYS 313 H PHE 314 n 64 PHE 314 H ARG 315 n 65 ARG 315 H ALA 316 n 66 ALA 316 H LYS 317 n 67 LYS 317 H THR 318 n 68 THR 318 H LYS 319 n 69 LYS 319 H LEU 320 n 70 LEU 320 H THR 321 n 71 THR 321 H ALA 322 n 72 ALA 322 H VAL 323 n 73 VAL 323 H THR 324 n 74 THR 324 H SER 325 n 75 SER 325 H THR 326 n 76 THR 326 H ILE 327 n 77 ILE 327 H THR 328 n 78 THR 328 H ALA 329 n 79 ALA 329 H TYR 330 n 80 TYR 330 H MET 331 n 81 MET 331 H GLU 332 n 82 GLU 332 H LEU 333 n 83 LEU 333 H SER 334 n 84 SER 334 H SER 335 n 85 SER 335 H LEU 336 n 86 LEU 336 H THR 337 n 87 THR 337 H ASN 338 n 88 ASN 338 H GLU 339 n 89 GLU 339 H ASP 340 n 90 ASP 340 H SER 341 n 91 SER 341 H ALA 342 n 92 ALA 342 H VAL 343 n 93 VAL 343 H TYR 344 n 94 TYR 344 H TYR 345 n 95 TYR 345 H CYS 346 n 96 CYS 346 H THR 347 n 97 THR 347 H ARG 348 n 98 ARG 348 H GLY 349 n 99 GLY 349 H GLY 350 n 100 GLY 350 H HIS 351 n 101 HIS 351 H GLY 352 n 102 GLY 352 H TYR 353 n 103 TYR 353 H TYR 354 n 104 TYR 354 H GLY 355 n 105 GLY 355 H ASP 356 n 106 ASP 356 H TYR 357 n 107 TYR 357 H TRP 358 n 108 TRP 358 H GLY 359 n 109 GLY 359 H GLN 360 n 110 GLN 360 H GLY 361 n 111 GLY 361 H ALA 362 n 112 ALA 362 H SER 363 n 113 SER 363 H LEU 364 n 114 LEU 364 H THR 365 n 115 THR 365 H VAL 366 n 116 VAL 366 H SER 367 n 117 SER 367 H SER 368 n 118 SER 368 H ALA 369 n 119 ALA 369 H LYS 370 n 120 LYS 370 H THR 371 n 121 THR 371 H THR 372 n 122 THR 372 H PRO 373 n 123 PRO 373 H PRO 374 n 124 PRO 374 H SER 375 n 125 SER 375 H VAL 376 n 126 VAL 376 H TYR 377 n 127 TYR 377 H PRO 378 n 128 PRO 378 H LEU 379 n 129 LEU 379 H ALA 380 n 130 ALA 380 H PRO 381 n 131 PRO 381 H GLY 382 n 132 GLY 382 H SER 383 n 133 SER 383 H n 134 384 H n 135 385 H n 136 386 H n 137 387 H n 138 388 H n 139 389 H MET 390 n 140 MET 390 H VAL 391 n 141 VAL 391 H THR 392 n 142 THR 392 H LEU 393 n 143 LEU 393 H GLY 394 n 144 GLY 394 H CYS 395 n 145 CYS 395 H LEU 396 n 146 LEU 396 H VAL 397 n 147 VAL 397 H LYS 398 n 148 LYS 398 H GLY 399 n 149 GLY 399 H TYR 400 n 150 TYR 400 H PHE 401 n 151 PHE 401 H PRO 402 n 152 PRO 402 H GLU 403 n 153 GLU 403 H PRO 404 n 154 PRO 404 H VAL 405 n 155 VAL 405 H THR 406 n 156 THR 406 H VAL 407 n 157 VAL 407 H THR 408 n 158 THR 408 H TRP 409 n 159 TRP 409 H ASN 410 n 160 ASN 410 H SER 411 n 161 SER 411 H GLY 412 n 162 GLY 412 H SER 413 n 163 SER 413 H LEU 414 n 164 LEU 414 H SER 415 n 165 SER 415 H SER 416 n 166 SER 416 H GLY 417 n 167 GLY 417 H VAL 418 n 168 VAL 418 H HIS 419 n 169 HIS 419 H THR 420 n 170 THR 420 H PHE 421 n 171 PHE 421 H PRO 422 n 172 PRO 422 H ALA 423 n 173 ALA 423 H VAL 424 n 174 VAL 424 H LEU 425 n 175 LEU 425 H GLN 426 n 176 GLN 426 H SER 427 n 177 SER 427 H ASP 428 n 178 ASP 428 H LEU 429 n 179 LEU 429 H TYR 430 n 180 TYR 430 H THR 431 n 181 THR 431 H LEU 432 n 182 LEU 432 H SER 433 n 183 SER 433 H SER 434 n 184 SER 434 H SER 435 n 185 SER 435 H VAL 436 n 186 VAL 436 H THR 437 n 187 THR 437 H VAL 438 n 188 VAL 438 H PRO 439 n 189 PRO 439 H SER 440 n 190 SER 440 H SER 441 n 191 SER 441 H THR 442 n 192 THR 442 H TRP 443 n 193 TRP 443 H PRO 444 n 194 PRO 444 H SER 445 n 195 SER 445 H GLU 446 n 196 GLU 446 H THR 447 n 197 THR 447 H VAL 448 n 198 VAL 448 H THR 449 n 199 THR 449 H CYS 450 n 200 CYS 450 H ASN 451 n 201 ASN 451 H VAL 452 n 202 VAL 452 H ALA 453 n 203 ALA 453 H HIS 454 n 204 HIS 454 H PRO 455 n 205 PRO 455 H ALA 456 n 206 ALA 456 H SER 457 n 207 SER 457 H SER 458 n 208 SER 458 H THR 459 n 209 THR 459 H LYS 460 n 210 LYS 460 H VAL 461 n 211 VAL 461 H ASP 462 n 212 ASP 462 H LYS 463 n 213 LYS 463 H LYS 464 n 214 LYS 464 H ILE 465 n 215 ILE 465 H VAL 466 n 216 VAL 466 H PRO 467 n 217 PRO 467 H ARG 468 n 218 ARG 468 H n 219 469 H author_and_software_defined_assembly PISA 2 dimeric 4700 -12 18030 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L O VAL 3 A O VAL 3 L N SER 25 A N SER 25 L O GLU 16 A O GLU 16 L N ALA 80 A N ALA 80 L N THR 76 A N THR 76 L O SER 65 A O SER 65 L O SER 8 A O SER 8 L N LYS 105 A N LYS 105 L O LEU 106 A O LEU 106 L N ALA 86 A N ALA 86 L N ALA 91 A N ALA 91 L O ASN 36 A O ASN 36 L O LYS 41 A O LYS 41 L N LEU 45 A N LEU 45 L N GLY 51 A N GLY 51 L O ASN 55 A O ASN 55 H N SER 257 B N SER 7 H O SER 271 B O SER 21 H N ALA 274 B N ALA 24 H O ILE 327 B O ILE 77 H N SER 334 B N SER 84 H O LYS 317 B O LYS 67 H N VAL 260 B N VAL 10 H O SER 363 B O SER 113 H O LEU 364 B O LEU 114 H N ALA 342 B N ALA 92 H N GLY 349 B N GLY 99 H O TRP 283 B O TRP 33 H O ARG 290 B O ARG 40 H N GLN 293 B N GLN 43 H N TYR 302 B N TYR 52 H O ALA 307 B O ALA 57 L O SER 114 A O SER 114 L N TYR 143 A N TYR 143 L O PHE 142 A O PHE 142 L N TYR 175 A N TYR 175 L N THR 182 A N THR 182 L O GLY 161 A O GLY 161 L O THR 148 A O THR 148 L N THR 199 A N THR 199 L N HIS 200 A N HIS 200 L O HIS 203 A O HIS 203 H O THR 372 B O THR 122 H N PHE 401 B N PHE 151 H O TYR 400 B O TYR 150 H N TYR 430 B N TYR 180 H N THR 437 B N THR 187 H O GLY 417 B O GLY 167 H O THR 406 B O THR 156 H N ALA 453 B N ALA 203 H O PRO 455 B O PRO 205 H N SER 458 B N SER 208 1 L CB GLN 1 A CB GLN 1 1 Y 1 L CG GLN 1 A CG GLN 1 1 Y 1 L CD GLN 1 A CD GLN 1 1 Y 1 L OE1 GLN 1 A OE1 GLN 1 1 Y 1 L NE2 GLN 1 A NE2 GLN 1 1 Y 1 L CB ASN 131 A CB ASN 131 1 Y 1 L CG ASN 131 A CG ASN 131 1 Y 1 L OD1 ASN 131 A OD1 ASN 131 1 Y 1 L ND2 ASN 131 A ND2 ASN 131 1 Y 1 L CB GLN 160 A CB GLN 160 1 Y 1 L CG GLN 160 A CG GLN 160 1 Y 1 L CD GLN 160 A CD GLN 160 1 Y 1 L OE1 GLN 160 A OE1 GLN 160 1 Y 1 L NE2 GLN 160 A NE2 GLN 160 1 Y 1 L CB ARG 186 A CB ARG 186 1 Y 1 L CG ARG 186 A CG ARG 186 1 Y 1 L CD ARG 186 A CD ARG 186 1 Y 1 L NE ARG 186 A NE ARG 186 1 Y 1 L CZ ARG 186 A CZ ARG 186 1 Y 1 L NH1 ARG 186 A NH1 ARG 186 1 Y 1 L NH2 ARG 186 A NH2 ARG 186 1 Y 1 L CB ALA 212 A CB ALA 212 1 Y 1 H CB GLN 293 B CB GLN 43 1 Y 1 H CG GLN 293 B CG GLN 43 1 Y 1 H CD GLN 293 B CD GLN 43 1 Y 1 H OE1 GLN 293 B OE1 GLN 43 1 Y 1 H NE2 GLN 293 B NE2 GLN 43 1 Y 1 H CA SER 383 B CA SER 133 1 Y 1 H C SER 383 B C SER 133 1 Y 1 H O SER 383 B O SER 133 1 Y 1 H CB SER 383 B CB SER 133 1 Y 1 H OG SER 383 B OG SER 133 1 Y 1 H OG SER 440 B OG SER 190 1 Y 1 H CB GLU 446 B CB GLU 196 1 Y 1 H CG GLU 446 B CG GLU 196 1 Y 1 H CD GLU 446 B CD GLU 196 1 Y 1 H OE1 GLU 446 B OE1 GLU 196 1 Y 1 H OE2 GLU 446 B OE2 GLU 196 1 Y 1 L ASP 213 A ASP 213 1 Y 1 L CYS 214 A CYS 214 1 Y 1 L SER 215 A SER 215 1 Y 1 H ALA 384 B ALA 134 1 Y 1 H ALA 385 B ALA 135 1 Y 1 H GLN 386 B GLN 136 1 Y 1 H THR 387 B THR 137 1 Y 1 H ASP 388 B ASP 138 1 Y 1 H SER 389 B SER 139 1 Y 1 H CYS 469 B CYS 219 1 Y 1 H CA PRO 291 PLANAR 1 5.02 0.80 106.30 111.32 L L L CD1 CG CD2 TRP TRP TRP 37 37 37 N 1 5.52 0.50 120.30 125.82 L L L NE CZ NH1 ARG ARG ARG 56 56 56 N 1 -4.45 0.60 121.00 116.55 L L L CB CG CD2 TYR TYR TYR 88 88 88 N 1 6.36 0.80 106.30 112.66 L L L CD1 CG CD2 TRP TRP TRP 93 93 93 N 1 -9.58 1.30 127.00 117.42 L L L CB CG CD1 TRP TRP TRP 93 93 93 N 1 -6.63 0.80 107.30 100.67 L L L CE2 CD2 CG TRP TRP TRP 93 93 93 N 1 7.56 0.90 133.90 141.46 L L L CG CD2 CE3 TRP TRP TRP 93 93 93 N 1 5.90 0.80 106.30 112.20 L L L CD1 CG CD2 TRP TRP TRP 98 98 98 N 1 -5.21 0.80 107.30 102.09 L L L CE2 CD2 CG TRP TRP TRP 98 98 98 N 1 6.14 0.80 106.30 112.44 L L L CD1 CG CD2 TRP TRP TRP 151 151 151 N 1 -5.70 0.80 107.30 101.60 L L L CE2 CD2 CG TRP TRP TRP 151 151 151 N 1 6.60 0.80 106.30 112.90 L L L CD1 CG CD2 TRP TRP TRP 188 188 188 N 1 -5.95 0.80 107.30 101.35 L L L CE2 CD2 CG TRP TRP TRP 188 188 188 N 1 6.10 0.80 106.30 112.40 H H H CD1 CG CD2 TRP TRP TRP 283 283 283 N 1 -5.77 0.80 107.30 101.53 H H H CE2 CD2 CG TRP TRP TRP 283 283 283 N 1 6.74 0.80 106.30 113.04 H H H CD1 CG CD2 TRP TRP TRP 286 286 286 N 1 -6.10 1.00 110.10 104.00 H H H CG CD1 NE1 TRP TRP TRP 286 286 286 N 1 -5.83 0.80 107.30 101.47 H H H CE2 CD2 CG TRP TRP TRP 286 286 286 N 1 9.42 1.50 119.30 128.72 H H H C N CA ARG PRO PRO 290 291 291 Y 1 22.52 2.10 111.70 134.22 H H H CB CA C PRO PRO PRO 291 291 291 N 1 7.58 0.80 106.30 113.88 H H H CD1 CG CD2 TRP TRP TRP 297 297 297 N 1 -5.85 0.80 107.30 101.45 H H H CE2 CD2 CG TRP TRP TRP 297 297 297 N 1 -3.63 0.50 120.30 116.67 H H H NE CZ NH2 ARG ARG ARG 315 315 315 N 1 4.36 0.50 120.30 124.66 H H H NE CZ NH1 ARG ARG ARG 348 348 348 N 1 -4.27 0.50 120.30 116.03 H H H NE CZ NH2 ARG ARG ARG 348 348 348 N 1 -3.90 0.60 121.00 117.10 H H H CB CG CD2 TYR TYR TYR 353 353 353 N 1 6.60 0.80 106.30 112.90 H H H CD1 CG CD2 TRP TRP TRP 358 358 358 N 1 -6.45 0.80 107.30 100.85 H H H CE2 CD2 CG TRP TRP TRP 358 358 358 N 1 -15.11 2.50 113.10 97.99 H H H N CA C GLY GLY GLY 382 382 382 N 1 6.16 0.80 106.30 112.46 H H H CD1 CG CD2 TRP TRP TRP 409 409 409 N 1 -5.50 0.80 107.30 101.80 H H H CE2 CD2 CG TRP TRP TRP 409 409 409 N 1 6.55 0.80 106.30 112.85 H H H CD1 CG CD2 TRP TRP TRP 443 443 443 N 1 -5.44 0.80 107.30 101.86 H H H CE2 CD2 CG TRP TRP TRP 443 443 443 N 1 L L NE2 CD2 HIS HIS 191 191 -0.066 0.011 1.373 1.307 N 1 L L NE2 CD2 HIS HIS 200 200 -0.069 0.011 1.373 1.304 N 1 H H NE2 CD2 HIS HIS 351 351 -0.070 0.011 1.373 1.303 N 1 H H NE2 CD2 HIS HIS 419 419 -0.071 0.011 1.373 1.302 N 1 L THR 53 73.75 -39.65 1 L ASN 54 -152.03 6.97 1 L ALA 86 -172.00 -172.84 1 L LEU 109 -65.57 93.22 1 H PRO 291 15.74 -67.41 1 H GLN 293 -156.76 -4.69 1 H ILE 327 37.04 52.79 1 H SER 427 69.61 -134.34 1 H SER 458 32.57 49.54 0.183 0.183 2.1 1 2.1 85 3295 33 0 3177 0.013 3.1 model building X-PLOR refinement X-PLOR phasing X-PLOR IGG1-LAMBDA SE155-4 FAB THE SOLUTION STRUCTURE OF A TRISACCHARIDE-ANTIBODY COMPLEX: COMPARISON OF NMR MEASUREMENTS WITH A CRYSTAL STRUCTURE 1 N N 2 N N 3 N N 4 N N 4 N N L SER 24 A SER 24 HELX_P L GLY 27 A GLY 27 5 H1 4 L THR 30 A THR 30 HELX_P L HIS 34 A HIS 34 5 H2 5 L SER 124 A SER 124 HELX_P L GLU 129 A GLU 129 1 H3 6 L GLU 127 A GLU 127 HELX_P L ASN 131 A ASN 131 5 H4 5 L THR 184 A THR 184 HELX_P L TRP 188 A TRP 188 1 H5 5 L ALA 187 A ALA 187 HELX_P L ARG 190 A ARG 190 5 H6 4 H THR 278 B THR 28 HELX_P H TYR 282 B TYR 32 5 H7 5 H THR 442 B THR 192 HELX_P H GLU 446 B GLU 196 1 H8 5 disulf 1.993 L CYS 22 A SG CYS 22 1_555 L CYS 90 A SG CYS 90 1_555 disulf 2.005 L CYS 137 A SG CYS 137 1_555 L CYS 196 A SG CYS 196 1_555 disulf 2.014 H CYS 272 B SG CYS 22 1_555 H CYS 346 B SG CYS 96 1_555 disulf 2.004 H CYS 395 B SG CYS 145 1_555 H CYS 450 B SG CYS 200 1_555 covale 1.422 both A MMA 1 C O2 MMA 1_555 A GLA 2 C C1 GLA 1_555 covale 1.399 both A MMA 1 C O3 MMA 1_555 A ABE 3 C C1 ABE 1_555 IMMUNOGLOBULIN IMMUNOGLOBULIN L TYR 143 A TYR 143 1 L PRO 144 A PRO 144 -2.86 H PHE 401 B PHE 151 1 H PRO 402 B PRO 152 -14.38 H GLU 403 B GLU 153 1 H PRO 404 B PRO 154 5.42 H TRP 443 B TRP 193 1 H PRO 444 B PRO 194 6.71 AAA39089 GB 1 1 387376 MAWISLILSLLALSSGAISQAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVP ARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKATLVCTITD FYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLSRADCS AAA73089 GB 2 1 208365 MKKTAIAIAVALAGFATVAQAEVQVQQSGTVLARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATF YNHKFRAKTKLTAVTSTITAYMELSSLTNEDSAVYYCTRGGHGYYGDYWGQGASLTVSSAKTTPPSVYPLAPGSAAQTDS MVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPAD CG 20 234 1MFD 1 215 387376 L 1 1 215 22 241 1MFD 251 469 208365 H 2 1 219 1 ALA conflict THR 28 1MFD L 387376 GB 47 28 1 THR conflict SER 31 1MFD L 387376 GB 50 31 1 SER conflict GLY 32 1MFD L 387376 GB 51 32 1 TYR conflict HIS 34 1MFD L 387376 GB 53 34 1 GLY conflict ASP 52 1MFD L 387376 GB 71 52 1 THR conflict PRO 82 1MFD L 387376 GB 101 82 1 TYR conflict CYS 94 1MFD L 387376 GB 113 94 1 SER conflict ASN 95 1MFD L 387376 GB 114 95 1 VAL conflict ILE 99 1MFD L 387376 GB 118 99 2 ALA deletion 1MFD H 208365 GB 239 2 ASP conflict ARG 468 1MFD H 208365 GB 240 218 4 6 4 6 4 3 4 3 anti-parallel parallel anti-parallel parallel anti-parallel parallel anti-parallel parallel anti-parallel parallel anti-parallel parallel anti-parallel parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel parallel L GLN 1 A GLN 1 L GLU 7 A GLU 7 L GLU 16 A GLU 16 L THR 26 A THR 26 L ASP 71 A ASP 71 L ALA 80 A ALA 80 L SER 65 A SER 65 L GLY 70 A GLY 70 L SER 8 A SER 8 L THR 12 A THR 12 L HIS 97 A HIS 97 L LEU 109 A LEU 109 L GLU 85 A GLU 85 L TRP 93 A TRP 93 L ASN 36 A ASN 36 L PRO 42 A PRO 42 L HIS 44 A HIS 44 L GLY 51 A GLY 51 L ASN 55 A ASN 55 L PRO 58 A PRO 58 H GLU 251 B GLU 1 H SER 257 B SER 7 H GLY 265 B GLY 15 H GLY 276 B GLY 26 H ILE 327 B ILE 77 H SER 335 B SER 85 H LYS 317 B LYS 67 H VAL 323 B VAL 73 H GLY 258 B GLY 8 H ALA 262 B ALA 12 H TYR 353 B TYR 103 H SER 367 B SER 117 H SER 341 B SER 91 H GLY 352 B GLY 102 H TRP 283 B TRP 33 H PRO 291 B PRO 41 H GLY 292 B GLY 42 H TYR 302 B TYR 52 H ALA 307 B ALA 57 H ASN 311 B ASN 61 L SER 114 A SER 114 L SER 124 A SER 124 L ALA 133 A ALA 133 L TYR 143 A TYR 143 L ASN 172 A ASN 172 L LEU 183 A LEU 183 L GLY 161 A GLY 161 L GLN 170 A GLN 170 L VAL 146 A VAL 146 L GLY 155 A GLY 155 L SER 192 A SER 192 L GLU 201 A GLU 201 L GLY 202 A GLY 202 L ARG 211 A ARG 211 H THR 372 B THR 122 H GLY 382 B GLY 132 H VAL 391 B VAL 141 H PHE 401 B PHE 151 H ASP 428 B ASP 178 H VAL 438 B VAL 188 H SER 416 B SER 166 H GLN 426 B GLN 176 H PRO 404 B PRO 154 H ASN 410 B ASN 160 H GLU 446 B GLU 196 H ALA 456 B ALA 206 H SER 457 B SER 207 H ARG 468 B ARG 218 19 P 21 21 21