1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Lee, M.-K.
Bae, S.-H.
Park, C.-J.
Cheong, H.-K.
Cheong, C.
Choi, B.-S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
31
1216
1223
10.1093/nar/gkg214
12582241
A single-nucleotide natural variation (U4 to C4) in an influenza A virus promoter exhibits a large structural change: implications for differential viral RNA synthesis by RNA-dependent RNA polymerase.
2003
10.2210/pdb1mfy/pdb
pdb_00001mfy
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
9911.909
C4 promoter of influneza A virus
1
syn
polymer
no
no
AGUAGAAACAAGGCUUCGGCCUGCUUUCGCU
AGUAGAAACAAGGCUUCGGCCUGCUUUCGCU
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-7.728
28
A
3
A
29
-8.838
A_U3:G29_A
1
-7.456
1.778
1.026
-0.364
-3.166
1
19
A
5
A
28
-5.391
A_G5:C28_A
2
7.368
-0.569
-0.231
-0.123
-10.319
1
20
A
6
A
27
-2.180
A_A6:U27_A
3
3.734
-0.036
-0.779
-0.230
-3.053
1
20
A
7
A
26
-4.888
A_A7:U26_A
4
-8.278
0.106
-0.468
0.069
-10.174
1
20
A
11
A
22
-4.251
A_A11:U22_A
5
-30.041
-0.954
-0.223
0.262
-0.372
1
19
A
12
A
21
-2.544
A_G12:C21_A
6
-15.376
-0.131
-0.496
-0.035
-2.637
1
19
A
13
A
20
-3.434
A_G13:C20_A
7
-16.518
-0.133
-0.388
-0.009
6.195
1
19
A
14
A
19
-5.951
A_C14:G19_A
8
0.760
0.571
-0.620
-0.173
-13.522
A
15
A
18
-91.783
A_U15:G18_A
9
-7.362
1.863
1.364
-5.010
1.936
59.481
A
A
3
5
44.485
A
A
29
28
3.742
40.431
-1.632
-0.875
AA_U3G5:C28G29_AA
1
10.740
-11.817
43.275
-3.004
2.209
3.427
39.372
A
A
5
6
14.527
A
A
28
27
3.655
9.636
-0.721
-0.819
AA_G5A6:U27C28_AA
2
-7.618
11.484
37.479
-2.485
0.066
3.396
32.245
A
A
6
7
22.733
A
A
27
26
3.834
12.321
-0.187
-0.430
AA_A6A7:U26U27_AA
3
0.148
-0.274
29.856
-3.296
0.368
3.025
37.640
A
A
11
12
8.196
A
A
22
21
3.105
5.269
-0.670
-0.618
AA_A11G12:C21U22_AA
4
-2.133
3.318
37.224
-1.602
0.777
3.397
35.497
A
A
12
13
23.242
A
A
21
20
3.861
13.817
0.051
-0.464
AA_G12G13:C20C21_AA
5
-0.643
1.081
32.771
-3.101
-0.193
2.638
39.075
A
A
13
14
34.047
A
A
20
19
3.397
21.583
-0.280
-0.428
AA_G13C14:G19C20_AA
6
-0.310
0.489
32.768
-3.269
0.381
3.231
101.025
A
A
14
15
16.533
A
A
19
18
3.447
25.318
0.316
-0.904
AA_C14U15:G18G19_AA
7
15.466
-10.100
97.730
-0.993
0.045
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2002-09-18
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
SOLUTION STRUCTURE OF THE COMPLEMENTARY RNA PROMOTER OF INFLUENZA A VIRUS
RCSB
Y
RCSB
2002-08-14
REL
This sequence occurs naturally in influenza A virus.
sample
structures with the lowest energy
100
16
2D NOESY
DQF-COSY
2D NOESY
3D HCCH-COSY
The structures are based on a total of 726 restraints, 445 are NOE-derived distance constraints, 196 dihedral angle restraints, 58 hydrogen bonding restraints.
distance geometry simulated annealing
1
minimized average structure
Unlabeled RNA, 1mM
90% H2O/10% D2O
Unlabeled RNA, 1mM
99.96% D2O,
Uniform labeling with 13C,15N
90% H2O/10% D2O
Uniform labeling with 13C,15N
99.96% D2O,
Brunger et al
structure solution
CNS
1.0
Delaglio et al
processing
NMRPipe
2.1
Brunger et al
refinement
CNS
1.0
800
Bruker
DRX
600
Varian
INOVA
A
1
n
1
A
1
A
G
2
n
2
G
2
A
U
3
n
3
U
3
A
A
4
n
4
A
4
A
G
5
n
5
G
5
A
A
6
n
6
A
6
A
A
7
n
7
A
7
A
A
8
n
8
A
8
A
C
9
n
9
C
9
A
A
10
n
10
A
10
A
A
11
n
11
A
11
A
G
12
n
12
G
12
A
G
13
n
13
G
13
A
C
14
n
14
C
14
A
U
15
n
15
U
15
A
U
16
n
16
U
16
A
C
17
n
17
C
17
A
G
18
n
18
G
18
A
G
19
n
19
G
19
A
C
20
n
20
C
20
A
C
21
n
21
C
21
A
U
22
n
22
U
22
A
G
23
n
23
G
23
A
C
24
n
24
C
24
A
U
25
n
25
U
25
A
U
26
n
26
U
26
A
U
27
n
27
U
27
A
C
28
n
28
C
28
A
G
29
n
29
G
29
A
C
30
n
30
C
30
A
U
31
n
31
U
31
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
4
A
A
H61
O2
A
U
11
22
1.54
4
A
A
O2'
H5'
G
U
2
3
1.56
7
A
A
H61
O2
A
U
11
22
1.58
8
A
A
O2'
H5'
G
U
2
3
1.56
16
A
A
O2'
H5'
G
U
2
3
1.45
minimized average
SOLUTION STRUCTURE OF INFLUENZA A VIRUS C4 PROMOTER
1
N
N
hydrog
TYPE_28_PAIR
A
U
3
A
N3
U
3
1_555
A
G
29
A
O6
G
29
1_555
hydrog
TYPE_28_PAIR
A
U
3
A
O2
U
3
1_555
A
G
29
A
N1
G
29
1_555
hydrog
TYPE_11_PAIR
A
A
4
A
N6
A
4
1_555
A
G
29
A
N3
G
29
1_555
hydrog
TYPE_11_PAIR
A
A
4
A
N7
A
4
1_555
A
G
29
A
N2
G
29
1_555
hydrog
WATSON-CRICK
A
G
5
A
N1
G
5
1_555
A
C
28
A
N3
C
28
1_555
hydrog
WATSON-CRICK
A
G
5
A
N2
G
5
1_555
A
C
28
A
O2
C
28
1_555
hydrog
WATSON-CRICK
A
G
5
A
O6
G
5
1_555
A
C
28
A
N4
C
28
1_555
hydrog
WATSON-CRICK
A
A
6
A
N1
A
6
1_555
A
U
27
A
N3
U
27
1_555
hydrog
WATSON-CRICK
A
A
6
A
N6
A
6
1_555
A
U
27
A
O4
U
27
1_555
hydrog
WATSON-CRICK
A
A
7
A
N1
A
7
1_555
A
U
26
A
N3
U
26
1_555
hydrog
WATSON-CRICK
A
A
7
A
N6
A
7
1_555
A
U
26
A
O4
U
26
1_555
hydrog
WATSON-CRICK
A
A
11
A
N1
A
11
1_555
A
U
22
A
N3
U
22
1_555
hydrog
WATSON-CRICK
A
A
11
A
N6
A
11
1_555
A
U
22
A
O4
U
22
1_555
hydrog
WATSON-CRICK
A
G
12
A
N1
G
12
1_555
A
C
21
A
N3
C
21
1_555
hydrog
WATSON-CRICK
A
G
12
A
N2
G
12
1_555
A
C
21
A
O2
C
21
1_555
hydrog
WATSON-CRICK
A
G
12
A
O6
G
12
1_555
A
C
21
A
N4
C
21
1_555
hydrog
WATSON-CRICK
A
G
13
A
N1
G
13
1_555
A
C
20
A
N3
C
20
1_555
hydrog
WATSON-CRICK
A
G
13
A
N2
G
13
1_555
A
C
20
A
O2
C
20
1_555
hydrog
WATSON-CRICK
A
G
13
A
O6
G
13
1_555
A
C
20
A
N4
C
20
1_555
hydrog
WATSON-CRICK
A
C
14
A
N3
C
14
1_555
A
G
19
A
N1
G
19
1_555
hydrog
WATSON-CRICK
A
C
14
A
N4
C
14
1_555
A
G
19
A
O6
G
19
1_555
hydrog
WATSON-CRICK
A
C
14
A
O2
C
14
1_555
A
G
19
A
N2
G
19
1_555
hydrog
U-G MISPAIR
A
U
15
A
O2
U
15
1_555
A
G
18
A
N1
G
18
1_555
RNA
Influenza A virus promoter, internal loop, single adenine bulge, C4, natural variant, RNA
1MFY
PDB
1
1MFY
1
31
1MFY
1
31
1MFY
A
1
1
31