1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Lee, M.-K. Bae, S.-H. Park, C.-J. Cheong, H.-K. Cheong, C. Choi, B.-S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking UK Nucleic Acids Res. NARHAD 0389 0305-1048 31 1216 1223 10.1093/nar/gkg214 12582241 A single-nucleotide natural variation (U4 to C4) in an influenza A virus promoter exhibits a large structural change: implications for differential viral RNA synthesis by RNA-dependent RNA polymerase. 2003 10.2210/pdb1mfy/pdb pdb_00001mfy 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 9911.909 C4 promoter of influneza A virus 1 syn polymer no no AGUAGAAACAAGGCUUCGGCCUGCUUUCGCU AGUAGAAACAAGGCUUCGGCCUGCUUUCGCU A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n -7.728 28 A 3 A 29 -8.838 A_U3:G29_A 1 -7.456 1.778 1.026 -0.364 -3.166 1 19 A 5 A 28 -5.391 A_G5:C28_A 2 7.368 -0.569 -0.231 -0.123 -10.319 1 20 A 6 A 27 -2.180 A_A6:U27_A 3 3.734 -0.036 -0.779 -0.230 -3.053 1 20 A 7 A 26 -4.888 A_A7:U26_A 4 -8.278 0.106 -0.468 0.069 -10.174 1 20 A 11 A 22 -4.251 A_A11:U22_A 5 -30.041 -0.954 -0.223 0.262 -0.372 1 19 A 12 A 21 -2.544 A_G12:C21_A 6 -15.376 -0.131 -0.496 -0.035 -2.637 1 19 A 13 A 20 -3.434 A_G13:C20_A 7 -16.518 -0.133 -0.388 -0.009 6.195 1 19 A 14 A 19 -5.951 A_C14:G19_A 8 0.760 0.571 -0.620 -0.173 -13.522 A 15 A 18 -91.783 A_U15:G18_A 9 -7.362 1.863 1.364 -5.010 1.936 59.481 A A 3 5 44.485 A A 29 28 3.742 40.431 -1.632 -0.875 AA_U3G5:C28G29_AA 1 10.740 -11.817 43.275 -3.004 2.209 3.427 39.372 A A 5 6 14.527 A A 28 27 3.655 9.636 -0.721 -0.819 AA_G5A6:U27C28_AA 2 -7.618 11.484 37.479 -2.485 0.066 3.396 32.245 A A 6 7 22.733 A A 27 26 3.834 12.321 -0.187 -0.430 AA_A6A7:U26U27_AA 3 0.148 -0.274 29.856 -3.296 0.368 3.025 37.640 A A 11 12 8.196 A A 22 21 3.105 5.269 -0.670 -0.618 AA_A11G12:C21U22_AA 4 -2.133 3.318 37.224 -1.602 0.777 3.397 35.497 A A 12 13 23.242 A A 21 20 3.861 13.817 0.051 -0.464 AA_G12G13:C20C21_AA 5 -0.643 1.081 32.771 -3.101 -0.193 2.638 39.075 A A 13 14 34.047 A A 20 19 3.397 21.583 -0.280 -0.428 AA_G13C14:G19C20_AA 6 -0.310 0.489 32.768 -3.269 0.381 3.231 101.025 A A 14 15 16.533 A A 19 18 3.447 25.318 0.316 -0.904 AA_C14U15:G18G19_AA 7 15.466 -10.100 97.730 -0.993 0.045 database_2 pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2002-09-18 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession SOLUTION STRUCTURE OF THE COMPLEMENTARY RNA PROMOTER OF INFLUENZA A VIRUS RCSB Y RCSB 2002-08-14 REL This sequence occurs naturally in influenza A virus. sample structures with the lowest energy 100 16 2D NOESY DQF-COSY 2D NOESY 3D HCCH-COSY The structures are based on a total of 726 restraints, 445 are NOE-derived distance constraints, 196 dihedral angle restraints, 58 hydrogen bonding restraints. distance geometry simulated annealing 1 minimized average structure Unlabeled RNA, 1mM 90% H2O/10% D2O Unlabeled RNA, 1mM 99.96% D2O, Uniform labeling with 13C,15N 90% H2O/10% D2O Uniform labeling with 13C,15N 99.96% D2O, Brunger et al structure solution CNS 1.0 Delaglio et al processing NMRPipe 2.1 Brunger et al refinement CNS 1.0 800 Bruker DRX 600 Varian INOVA A 1 n 1 A 1 A G 2 n 2 G 2 A U 3 n 3 U 3 A A 4 n 4 A 4 A G 5 n 5 G 5 A A 6 n 6 A 6 A A 7 n 7 A 7 A A 8 n 8 A 8 A C 9 n 9 C 9 A A 10 n 10 A 10 A A 11 n 11 A 11 A G 12 n 12 G 12 A G 13 n 13 G 13 A C 14 n 14 C 14 A U 15 n 15 U 15 A U 16 n 16 U 16 A C 17 n 17 C 17 A G 18 n 18 G 18 A G 19 n 19 G 19 A C 20 n 20 C 20 A C 21 n 21 C 21 A U 22 n 22 U 22 A G 23 n 23 G 23 A C 24 n 24 C 24 A U 25 n 25 U 25 A U 26 n 26 U 26 A U 27 n 27 U 27 A C 28 n 28 C 28 A G 29 n 29 G 29 A C 30 n 30 C 30 A U 31 n 31 U 31 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 4 A A H61 O2 A U 11 22 1.54 4 A A O2' H5' G U 2 3 1.56 7 A A H61 O2 A U 11 22 1.58 8 A A O2' H5' G U 2 3 1.56 16 A A O2' H5' G U 2 3 1.45 minimized average SOLUTION STRUCTURE OF INFLUENZA A VIRUS C4 PROMOTER 1 N N hydrog TYPE_28_PAIR A U 3 A N3 U 3 1_555 A G 29 A O6 G 29 1_555 hydrog TYPE_28_PAIR A U 3 A O2 U 3 1_555 A G 29 A N1 G 29 1_555 hydrog TYPE_11_PAIR A A 4 A N6 A 4 1_555 A G 29 A N3 G 29 1_555 hydrog TYPE_11_PAIR A A 4 A N7 A 4 1_555 A G 29 A N2 G 29 1_555 hydrog WATSON-CRICK A G 5 A N1 G 5 1_555 A C 28 A N3 C 28 1_555 hydrog WATSON-CRICK A G 5 A N2 G 5 1_555 A C 28 A O2 C 28 1_555 hydrog WATSON-CRICK A G 5 A O6 G 5 1_555 A C 28 A N4 C 28 1_555 hydrog WATSON-CRICK A A 6 A N1 A 6 1_555 A U 27 A N3 U 27 1_555 hydrog WATSON-CRICK A A 6 A N6 A 6 1_555 A U 27 A O4 U 27 1_555 hydrog WATSON-CRICK A A 7 A N1 A 7 1_555 A U 26 A N3 U 26 1_555 hydrog WATSON-CRICK A A 7 A N6 A 7 1_555 A U 26 A O4 U 26 1_555 hydrog WATSON-CRICK A A 11 A N1 A 11 1_555 A U 22 A N3 U 22 1_555 hydrog WATSON-CRICK A A 11 A N6 A 11 1_555 A U 22 A O4 U 22 1_555 hydrog WATSON-CRICK A G 12 A N1 G 12 1_555 A C 21 A N3 C 21 1_555 hydrog WATSON-CRICK A G 12 A N2 G 12 1_555 A C 21 A O2 C 21 1_555 hydrog WATSON-CRICK A G 12 A O6 G 12 1_555 A C 21 A N4 C 21 1_555 hydrog WATSON-CRICK A G 13 A N1 G 13 1_555 A C 20 A N3 C 20 1_555 hydrog WATSON-CRICK A G 13 A N2 G 13 1_555 A C 20 A O2 C 20 1_555 hydrog WATSON-CRICK A G 13 A O6 G 13 1_555 A C 20 A N4 C 20 1_555 hydrog WATSON-CRICK A C 14 A N3 C 14 1_555 A G 19 A N1 G 19 1_555 hydrog WATSON-CRICK A C 14 A N4 C 14 1_555 A G 19 A O6 G 19 1_555 hydrog WATSON-CRICK A C 14 A O2 C 14 1_555 A G 19 A N2 G 19 1_555 hydrog U-G MISPAIR A U 15 A O2 U 15 1_555 A G 18 A N1 G 18 1_555 RNA Influenza A virus promoter, internal loop, single adenine bulge, C4, natural variant, RNA 1MFY PDB 1 1MFY 1 31 1MFY 1 31 1MFY A 1 1 31