0.016521 0.000000 0.000000 0.000000 0.013719 0.000000 0.000000 0.000000 0.006192 0.00000 0.00000 0.00000 Pineda, A.O. Savvides, S. Waksman, G. Di Cera, E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 60.530 72.890 161.490 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 277 40177 40180 10.1074/jbc.C200465200 12205081 Crystal structure of the anticoagulant slow form of thrombin 2002 10.2210/pdb1mh0/pdb pdb_00001mh0 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirrors CCD 2002-03-23 ADSC QUANTUM 4 Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 0.978 1.0 19-BM APS 0.978 SYNCHROTRON APS BEAMLINE 19-BM 33007.875 Prothrombin 3.4.21.5 R77aA 2 man polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 2 man non-polymer 18.015 water 111 nat water Alpha-thrombin; coagulation factor II E.C.3.4.21.5 no no ADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPW DKNFTENDLLVRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQF ADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPW DKNFTENDLLVRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Chinese hamster Cricetulus sample 9606 blood Homo sapiens 10029 kidney Cricetulus griseus kidney cells plasmid HPC4-pNUT 1 2.70 54.39 VAPOR DIFFUSION, HANGING DROP 7.6 PEG 2000-Monomethyl ether, Tris-Cl, pH 7.6, VAPOR DIFFUSION, HANGING DROP at 298K 298 chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_site struct_site_gen chem_comp database_2 struct_ref_seq_dif repository Initial release Carbohydrate remediation repository Remediation Version format compliance Non-polymer description Version format compliance Data collection Derived calculations Structure summary Database references Structure summary 1 0 2002-11-08 1 1 2008-04-28 1 2 2011-07-13 1 3 2020-07-29 1 4 2021-10-27 _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc RCSB Y RCSB 2002-08-18 REL REL NAG 2-acetamido-2-deoxy-beta-D-glucopyranose HOH water NAG 600 2 NAG NAG 600 A NAG 700 2 NAG NAG 700 B HOH 701 3 HOH HOH 701 A HOH 704 3 HOH HOH 704 A HOH 705 3 HOH HOH 705 A HOH 706 3 HOH HOH 706 A HOH 707 3 HOH HOH 707 A HOH 708 3 HOH HOH 708 A HOH 709 3 HOH HOH 709 A HOH 710 3 HOH HOH 710 A HOH 711 3 HOH HOH 711 A HOH 713 3 HOH HOH 713 A HOH 714 3 HOH HOH 714 A HOH 715 3 HOH HOH 715 A HOH 716 3 HOH HOH 716 A HOH 717 3 HOH HOH 717 A HOH 718 3 HOH HOH 718 A HOH 719 3 HOH HOH 719 A HOH 720 3 HOH HOH 720 A HOH 721 3 HOH HOH 721 A HOH 722 3 HOH HOH 722 A HOH 723 3 HOH HOH 723 A HOH 724 3 HOH HOH 724 A HOH 725 3 HOH HOH 725 A HOH 726 3 HOH HOH 726 A HOH 727 3 HOH HOH 727 A HOH 728 3 HOH HOH 728 A HOH 729 3 HOH HOH 729 A HOH 730 3 HOH HOH 730 A HOH 731 3 HOH HOH 731 A HOH 732 3 HOH HOH 732 A HOH 733 3 HOH HOH 733 A HOH 734 3 HOH HOH 734 A HOH 735 3 HOH HOH 735 A HOH 736 3 HOH HOH 736 A HOH 737 3 HOH HOH 737 A HOH 738 3 HOH HOH 738 A HOH 739 3 HOH HOH 739 A HOH 740 3 HOH HOH 740 A HOH 741 3 HOH HOH 741 A HOH 742 3 HOH HOH 742 A HOH 743 3 HOH HOH 743 A HOH 744 3 HOH HOH 744 A HOH 745 3 HOH HOH 745 A HOH 747 3 HOH HOH 747 A HOH 748 3 HOH HOH 748 A HOH 749 3 HOH HOH 749 A HOH 750 3 HOH HOH 750 A HOH 751 3 HOH HOH 751 A HOH 752 3 HOH HOH 752 A HOH 753 3 HOH HOH 753 A HOH 754 3 HOH HOH 754 A HOH 755 3 HOH HOH 755 A HOH 756 3 HOH HOH 756 A HOH 757 3 HOH HOH 757 A HOH 758 3 HOH HOH 758 A HOH 759 3 HOH HOH 759 A HOH 760 3 HOH HOH 760 A HOH 761 3 HOH HOH 761 A HOH 762 3 HOH HOH 762 A HOH 763 3 HOH HOH 763 A HOH 764 3 HOH HOH 764 A HOH 765 3 HOH HOH 765 A HOH 766 3 HOH HOH 766 A HOH 767 3 HOH HOH 767 A HOH 700 3 HOH HOH 701 B HOH 702 3 HOH HOH 702 B HOH 703 3 HOH HOH 703 B HOH 712 3 HOH HOH 704 B HOH 746 3 HOH HOH 705 B HOH 768 3 HOH HOH 706 B HOH 769 3 HOH HOH 707 B HOH 770 3 HOH HOH 708 B HOH 771 3 HOH HOH 709 B HOH 772 3 HOH HOH 710 B HOH 773 3 HOH HOH 711 B HOH 774 3 HOH HOH 712 B HOH 775 3 HOH HOH 713 B HOH 776 3 HOH HOH 714 B HOH 777 3 HOH HOH 715 B HOH 778 3 HOH HOH 716 B HOH 779 3 HOH HOH 717 B HOH 780 3 HOH HOH 718 B HOH 781 3 HOH HOH 719 B HOH 782 3 HOH HOH 720 B HOH 783 3 HOH HOH 721 B HOH 784 3 HOH HOH 722 B HOH 785 3 HOH HOH 723 B HOH 786 3 HOH HOH 724 B HOH 787 3 HOH HOH 725 B HOH 788 3 HOH HOH 726 B HOH 789 3 HOH HOH 727 B HOH 790 3 HOH HOH 728 B HOH 791 3 HOH HOH 729 B HOH 792 3 HOH HOH 730 B HOH 793 3 HOH HOH 731 B HOH 794 3 HOH HOH 732 B HOH 795 3 HOH HOH 733 B HOH 796 3 HOH HOH 734 B HOH 797 3 HOH HOH 735 B HOH 798 3 HOH HOH 736 B HOH 799 3 HOH HOH 737 B HOH 800 3 HOH HOH 738 B HOH 801 3 HOH HOH 739 B HOH 802 3 HOH HOH 740 B HOH 803 3 HOH HOH 741 B HOH 804 3 HOH HOH 742 B HOH 805 3 HOH HOH 743 B HOH 806 3 HOH HOH 744 B HOH 807 3 HOH HOH 745 B HOH 808 3 HOH HOH 746 B HOH 809 3 HOH HOH 747 B HOH 810 3 HOH HOH 748 B ALA 1 n 1 B ALA 1 A ASP 1 n 2 A ASP 1 A CYS 1 n 3 CYS 1 A GLY 2 n 4 GLY 2 A LEU 3 n 5 LEU 3 A ARG 4 n 6 ARG 4 A PRO 5 n 7 PRO 5 A LEU 6 n 8 LEU 6 A PHE 7 n 9 PHE 7 A GLU 8 n 10 GLU 8 A LYS 9 n 11 LYS 9 A LYS 10 n 12 LYS 10 A SER 11 n 13 SER 11 A LEU 12 n 14 LEU 12 A GLU 13 n 15 GLU 13 A ASP 14 n 16 ASP 14 A LYS 14 n 17 A LYS 14 A THR 14 n 18 B THR 14 A GLU 14 n 19 C GLU 14 A ARG 14 n 20 D ARG 14 A GLU 14 n 21 E GLU 14 A LEU 14 n 22 F LEU 14 A LEU 14 n 23 G LEU 14 A GLU 14 n 24 H GLU 14 A SER 14 n 25 I SER 14 A TYR 14 n 26 J TYR 14 A ILE 14 n 27 K ILE 14 A n 28 L 14 A n 29 M 14 A n 30 15 A ILE 16 n 31 ILE 16 A VAL 17 n 32 VAL 17 A GLU 18 n 33 GLU 18 A GLY 19 n 34 GLY 19 A SER 20 n 35 SER 20 A ASP 21 n 36 ASP 21 A ALA 22 n 37 ALA 22 A GLU 23 n 38 GLU 23 A ILE 24 n 39 ILE 24 A GLY 25 n 40 GLY 25 A MET 26 n 41 MET 26 A SER 27 n 42 SER 27 A PRO 28 n 43 PRO 28 A TRP 29 n 44 TRP 29 A GLN 30 n 45 GLN 30 A VAL 31 n 46 VAL 31 A MET 32 n 47 MET 32 A LEU 33 n 48 LEU 33 A PHE 34 n 49 PHE 34 A ARG 35 n 50 ARG 35 A LYS 36 n 51 LYS 36 A SER 36 n 52 A SER 36 A PRO 37 n 53 PRO 37 A GLN 38 n 54 GLN 38 A GLU 39 n 55 GLU 39 A LEU 40 n 56 LEU 40 A LEU 41 n 57 LEU 41 A CYS 42 n 58 CYS 42 A GLY 43 n 59 GLY 43 A ALA 44 n 60 ALA 44 A SER 45 n 61 SER 45 A LEU 46 n 62 LEU 46 A ILE 47 n 63 ILE 47 A SER 48 n 64 SER 48 A ASP 49 n 65 ASP 49 A ARG 50 n 66 ARG 50 A TRP 51 n 67 TRP 51 A VAL 52 n 68 VAL 52 A LEU 53 n 69 LEU 53 A THR 54 n 70 THR 54 A ALA 55 n 71 ALA 55 A ALA 56 n 72 ALA 56 A HIS 57 n 73 HIS 57 A CYS 58 n 74 CYS 58 A LEU 59 n 75 LEU 59 A LEU 60 n 76 LEU 60 A TYR 60 n 77 A TYR 60 A PRO 60 n 78 B PRO 60 A PRO 60 n 79 C PRO 60 A TRP 60 n 80 D TRP 60 A ASP 60 n 81 E ASP 60 A LYS 60 n 82 F LYS 60 A ASN 60 n 83 G ASN 60 A PHE 60 n 84 H PHE 60 A THR 60 n 85 I THR 60 A GLU 61 n 86 GLU 61 A ASN 62 n 87 ASN 62 A ASP 63 n 88 ASP 63 A LEU 64 n 89 LEU 64 A LEU 65 n 90 LEU 65 A VAL 66 n 91 VAL 66 A ARG 67 n 92 ARG 67 A ILE 68 n 93 ILE 68 A GLY 69 n 94 GLY 69 A LYS 70 n 95 LYS 70 A HIS 71 n 96 HIS 71 A SER 72 n 97 SER 72 A ARG 73 n 98 ARG 73 A THR 74 n 99 THR 74 A ARG 75 n 100 ARG 75 A TYR 76 n 101 TYR 76 A GLU 77 n 102 GLU 77 A ALA 77 n 103 A ALA 77 A ASN 78 n 104 ASN 78 A ILE 79 n 105 ILE 79 A GLU 80 n 106 GLU 80 A LYS 81 n 107 LYS 81 A ILE 82 n 108 ILE 82 A SER 83 n 109 SER 83 A MET 84 n 110 MET 84 A LEU 85 n 111 LEU 85 A GLU 86 n 112 GLU 86 A LYS 87 n 113 LYS 87 A ILE 88 n 114 ILE 88 A TYR 89 n 115 TYR 89 A ILE 90 n 116 ILE 90 A HIS 91 n 117 HIS 91 A PRO 92 n 118 PRO 92 A ARG 93 n 119 ARG 93 A TYR 94 n 120 TYR 94 A ASN 95 n 121 ASN 95 A TRP 96 n 122 TRP 96 A ARG 97 n 123 ARG 97 A GLU 97 n 124 A GLU 97 A ASN 98 n 125 ASN 98 A LEU 99 n 126 LEU 99 A ASP 100 n 127 ASP 100 A ARG 101 n 128 ARG 101 A ASP 102 n 129 ASP 102 A ILE 103 n 130 ILE 103 A ALA 104 n 131 ALA 104 A LEU 105 n 132 LEU 105 A MET 106 n 133 MET 106 A LYS 107 n 134 LYS 107 A LEU 108 n 135 LEU 108 A LYS 109 n 136 LYS 109 A LYS 110 n 137 LYS 110 A PRO 111 n 138 PRO 111 A VAL 112 n 139 VAL 112 A ALA 113 n 140 ALA 113 A PHE 114 n 141 PHE 114 A SER 115 n 142 SER 115 A ASP 116 n 143 ASP 116 A TYR 117 n 144 TYR 117 A ILE 118 n 145 ILE 118 A HIS 119 n 146 HIS 119 A PRO 120 n 147 PRO 120 A VAL 121 n 148 VAL 121 A CYS 122 n 149 CYS 122 A LEU 123 n 150 LEU 123 A PRO 124 n 151 PRO 124 A ASP 125 n 152 ASP 125 A ARG 126 n 153 ARG 126 A GLU 127 n 154 GLU 127 A THR 128 n 155 THR 128 A ALA 129 n 156 ALA 129 A ALA 129 n 157 A ALA 129 A SER 129 n 158 B SER 129 A LEU 129 n 159 C LEU 129 A LEU 130 n 160 LEU 130 A GLN 131 n 161 GLN 131 A ALA 132 n 162 ALA 132 A GLY 133 n 163 GLY 133 A TYR 134 n 164 TYR 134 A LYS 135 n 165 LYS 135 A GLY 136 n 166 GLY 136 A ARG 137 n 167 ARG 137 A VAL 138 n 168 VAL 138 A THR 139 n 169 THR 139 A GLY 140 n 170 GLY 140 A TRP 141 n 171 TRP 141 A GLY 142 n 172 GLY 142 A ASN 143 n 173 ASN 143 A LEU 144 n 174 LEU 144 A LYS 145 n 175 LYS 145 A GLU 146 n 176 GLU 146 A THR 147 n 177 THR 147 A n 178 A 147 A n 179 B 147 A n 180 C 147 A n 181 D 147 A n 182 E 147 A n 183 F 147 A n 184 G 147 A GLY 150 n 185 GLY 150 A GLN 151 n 186 GLN 151 A PRO 152 n 187 PRO 152 A SER 153 n 188 SER 153 A VAL 154 n 189 VAL 154 A LEU 155 n 190 LEU 155 A GLN 156 n 191 GLN 156 A VAL 157 n 192 VAL 157 A VAL 158 n 193 VAL 158 A ASN 159 n 194 ASN 159 A LEU 160 n 195 LEU 160 A PRO 161 n 196 PRO 161 A ILE 162 n 197 ILE 162 A VAL 163 n 198 VAL 163 A GLU 164 n 199 GLU 164 A ARG 165 n 200 ARG 165 A PRO 166 n 201 PRO 166 A VAL 167 n 202 VAL 167 A CYS 168 n 203 CYS 168 A LYS 169 n 204 LYS 169 A ASP 170 n 205 ASP 170 A SER 171 n 206 SER 171 A THR 172 n 207 THR 172 A ARG 173 n 208 ARG 173 A ILE 174 n 209 ILE 174 A ARG 175 n 210 ARG 175 A ILE 176 n 211 ILE 176 A THR 177 n 212 THR 177 A ASP 178 n 213 ASP 178 A ASN 179 n 214 ASN 179 A MET 180 n 215 MET 180 A PHE 181 n 216 PHE 181 A CYS 182 n 217 CYS 182 A ALA 183 n 218 ALA 183 A GLY 184 n 219 GLY 184 A TYR 184 n 220 A TYR 184 A LYS 185 n 221 LYS 185 A PRO 186 n 222 PRO 186 A ASP 186 n 223 A ASP 186 A GLU 186 n 224 B GLU 186 A GLY 186 n 225 C GLY 186 A LYS 186 n 226 D LYS 186 A ARG 187 n 227 ARG 187 A GLY 188 n 228 GLY 188 A ASP 189 n 229 ASP 189 A ALA 190 n 230 ALA 190 A CYS 191 n 231 CYS 191 A GLU 192 n 232 GLU 192 A GLY 193 n 233 GLY 193 A ASP 194 n 234 ASP 194 A SER 195 n 235 SER 195 A GLY 196 n 236 GLY 196 A GLY 197 n 237 GLY 197 A PRO 198 n 238 PRO 198 A PHE 199 n 239 PHE 199 A VAL 200 n 240 VAL 200 A MET 201 n 241 MET 201 A LYS 202 n 242 LYS 202 A SER 203 n 243 SER 203 A PRO 204 n 244 PRO 204 A PHE 204 n 245 A PHE 204 A ASN 204 n 246 B ASN 204 A ASN 205 n 247 ASN 205 A ARG 206 n 248 ARG 206 A TRP 207 n 249 TRP 207 A TYR 208 n 250 TYR 208 A GLN 209 n 251 GLN 209 A MET 210 n 252 MET 210 A GLY 211 n 253 GLY 211 A ILE 212 n 254 ILE 212 A VAL 213 n 255 VAL 213 A SER 214 n 256 SER 214 A TRP 215 n 257 TRP 215 A GLY 216 n 258 GLY 216 A GLU 217 n 259 GLU 217 A GLY 219 n 260 GLY 219 A CYS 220 n 261 CYS 220 A ASP 221 n 262 ASP 221 A ARG 221 n 263 A ARG 221 A ASP 222 n 264 ASP 222 A GLY 223 n 265 GLY 223 A LYS 224 n 266 LYS 224 A TYR 225 n 267 TYR 225 A GLY 226 n 268 GLY 226 A PHE 227 n 269 PHE 227 A TYR 228 n 270 TYR 228 A THR 229 n 271 THR 229 A HIS 230 n 272 HIS 230 A VAL 231 n 273 VAL 231 A PHE 232 n 274 PHE 232 A ARG 233 n 275 ARG 233 A LEU 234 n 276 LEU 234 A LYS 235 n 277 LYS 235 A LYS 236 n 278 LYS 236 A TRP 237 n 279 TRP 237 A ILE 238 n 280 ILE 238 A GLN 239 n 281 GLN 239 A LYS 240 n 282 LYS 240 A VAL 241 n 283 VAL 241 A ILE 242 n 284 ILE 242 A ASP 243 n 285 ASP 243 A GLN 244 n 286 GLN 244 A PHE 245 n 287 PHE 245 A ALA 1 n 1 B ALA 1 B ASP 1 n 2 A ASP 1 B CYS 1 n 3 CYS 1 B GLY 2 n 4 GLY 2 B LEU 3 n 5 LEU 3 B ARG 4 n 6 ARG 4 B PRO 5 n 7 PRO 5 B LEU 6 n 8 LEU 6 B PHE 7 n 9 PHE 7 B GLU 8 n 10 GLU 8 B LYS 9 n 11 LYS 9 B LYS 10 n 12 LYS 10 B SER 11 n 13 SER 11 B LEU 12 n 14 LEU 12 B GLU 13 n 15 GLU 13 B ASP 14 n 16 ASP 14 B LYS 14 n 17 A LYS 14 B THR 14 n 18 B THR 14 B GLU 14 n 19 C GLU 14 B ARG 14 n 20 D ARG 14 B GLU 14 n 21 E GLU 14 B LEU 14 n 22 F LEU 14 B LEU 14 n 23 G LEU 14 B GLU 14 n 24 H GLU 14 B SER 14 n 25 I SER 14 B TYR 14 n 26 J TYR 14 B ILE 14 n 27 K ILE 14 B n 28 L 14 B n 29 M 14 B n 30 15 B ILE 16 n 31 ILE 16 B VAL 17 n 32 VAL 17 B GLU 18 n 33 GLU 18 B GLY 19 n 34 GLY 19 B SER 20 n 35 SER 20 B ASP 21 n 36 ASP 21 B ALA 22 n 37 ALA 22 B GLU 23 n 38 GLU 23 B ILE 24 n 39 ILE 24 B GLY 25 n 40 GLY 25 B MET 26 n 41 MET 26 B SER 27 n 42 SER 27 B PRO 28 n 43 PRO 28 B TRP 29 n 44 TRP 29 B GLN 30 n 45 GLN 30 B VAL 31 n 46 VAL 31 B MET 32 n 47 MET 32 B LEU 33 n 48 LEU 33 B PHE 34 n 49 PHE 34 B ARG 35 n 50 ARG 35 B LYS 36 n 51 LYS 36 B SER 36 n 52 A SER 36 B PRO 37 n 53 PRO 37 B GLN 38 n 54 GLN 38 B GLU 39 n 55 GLU 39 B LEU 40 n 56 LEU 40 B LEU 41 n 57 LEU 41 B CYS 42 n 58 CYS 42 B GLY 43 n 59 GLY 43 B ALA 44 n 60 ALA 44 B SER 45 n 61 SER 45 B LEU 46 n 62 LEU 46 B ILE 47 n 63 ILE 47 B SER 48 n 64 SER 48 B ASP 49 n 65 ASP 49 B ARG 50 n 66 ARG 50 B TRP 51 n 67 TRP 51 B VAL 52 n 68 VAL 52 B LEU 53 n 69 LEU 53 B THR 54 n 70 THR 54 B ALA 55 n 71 ALA 55 B ALA 56 n 72 ALA 56 B HIS 57 n 73 HIS 57 B CYS 58 n 74 CYS 58 B LEU 59 n 75 LEU 59 B LEU 60 n 76 LEU 60 B TYR 60 n 77 A TYR 60 B PRO 60 n 78 B PRO 60 B PRO 60 n 79 C PRO 60 B TRP 60 n 80 D TRP 60 B ASP 60 n 81 E ASP 60 B LYS 60 n 82 F LYS 60 B ASN 60 n 83 G ASN 60 B PHE 60 n 84 H PHE 60 B THR 60 n 85 I THR 60 B GLU 61 n 86 GLU 61 B ASN 62 n 87 ASN 62 B ASP 63 n 88 ASP 63 B LEU 64 n 89 LEU 64 B LEU 65 n 90 LEU 65 B VAL 66 n 91 VAL 66 B ARG 67 n 92 ARG 67 B ILE 68 n 93 ILE 68 B GLY 69 n 94 GLY 69 B LYS 70 n 95 LYS 70 B HIS 71 n 96 HIS 71 B SER 72 n 97 SER 72 B ARG 73 n 98 ARG 73 B THR 74 n 99 THR 74 B ARG 75 n 100 ARG 75 B TYR 76 n 101 TYR 76 B GLU 77 n 102 GLU 77 B ALA 77 n 103 A ALA 77 B ASN 78 n 104 ASN 78 B ILE 79 n 105 ILE 79 B GLU 80 n 106 GLU 80 B LYS 81 n 107 LYS 81 B ILE 82 n 108 ILE 82 B SER 83 n 109 SER 83 B MET 84 n 110 MET 84 B LEU 85 n 111 LEU 85 B GLU 86 n 112 GLU 86 B LYS 87 n 113 LYS 87 B ILE 88 n 114 ILE 88 B TYR 89 n 115 TYR 89 B ILE 90 n 116 ILE 90 B HIS 91 n 117 HIS 91 B PRO 92 n 118 PRO 92 B ARG 93 n 119 ARG 93 B TYR 94 n 120 TYR 94 B ASN 95 n 121 ASN 95 B TRP 96 n 122 TRP 96 B ARG 97 n 123 ARG 97 B GLU 97 n 124 A GLU 97 B ASN 98 n 125 ASN 98 B LEU 99 n 126 LEU 99 B ASP 100 n 127 ASP 100 B ARG 101 n 128 ARG 101 B ASP 102 n 129 ASP 102 B ILE 103 n 130 ILE 103 B ALA 104 n 131 ALA 104 B LEU 105 n 132 LEU 105 B MET 106 n 133 MET 106 B LYS 107 n 134 LYS 107 B LEU 108 n 135 LEU 108 B LYS 109 n 136 LYS 109 B LYS 110 n 137 LYS 110 B PRO 111 n 138 PRO 111 B VAL 112 n 139 VAL 112 B ALA 113 n 140 ALA 113 B PHE 114 n 141 PHE 114 B SER 115 n 142 SER 115 B ASP 116 n 143 ASP 116 B TYR 117 n 144 TYR 117 B ILE 118 n 145 ILE 118 B HIS 119 n 146 HIS 119 B PRO 120 n 147 PRO 120 B VAL 121 n 148 VAL 121 B CYS 122 n 149 CYS 122 B LEU 123 n 150 LEU 123 B PRO 124 n 151 PRO 124 B ASP 125 n 152 ASP 125 B ARG 126 n 153 ARG 126 B GLU 127 n 154 GLU 127 B THR 128 n 155 THR 128 B ALA 129 n 156 ALA 129 B ALA 129 n 157 A ALA 129 B SER 129 n 158 B SER 129 B LEU 129 n 159 C LEU 129 B LEU 130 n 160 LEU 130 B GLN 131 n 161 GLN 131 B ALA 132 n 162 ALA 132 B GLY 133 n 163 GLY 133 B TYR 134 n 164 TYR 134 B LYS 135 n 165 LYS 135 B GLY 136 n 166 GLY 136 B ARG 137 n 167 ARG 137 B VAL 138 n 168 VAL 138 B THR 139 n 169 THR 139 B GLY 140 n 170 GLY 140 B TRP 141 n 171 TRP 141 B GLY 142 n 172 GLY 142 B ASN 143 n 173 ASN 143 B LEU 144 n 174 LEU 144 B LYS 145 n 175 LYS 145 B GLU 146 n 176 GLU 146 B THR 147 n 177 THR 147 B n 178 A 147 B n 179 B 147 B n 180 C 147 B n 181 D 147 B n 182 E 147 B n 183 F 147 B n 184 G 147 B GLY 150 n 185 GLY 150 B GLN 151 n 186 GLN 151 B PRO 152 n 187 PRO 152 B SER 153 n 188 SER 153 B VAL 154 n 189 VAL 154 B LEU 155 n 190 LEU 155 B GLN 156 n 191 GLN 156 B VAL 157 n 192 VAL 157 B VAL 158 n 193 VAL 158 B ASN 159 n 194 ASN 159 B LEU 160 n 195 LEU 160 B PRO 161 n 196 PRO 161 B ILE 162 n 197 ILE 162 B VAL 163 n 198 VAL 163 B GLU 164 n 199 GLU 164 B ARG 165 n 200 ARG 165 B PRO 166 n 201 PRO 166 B VAL 167 n 202 VAL 167 B CYS 168 n 203 CYS 168 B LYS 169 n 204 LYS 169 B ASP 170 n 205 ASP 170 B SER 171 n 206 SER 171 B THR 172 n 207 THR 172 B ARG 173 n 208 ARG 173 B ILE 174 n 209 ILE 174 B ARG 175 n 210 ARG 175 B ILE 176 n 211 ILE 176 B THR 177 n 212 THR 177 B ASP 178 n 213 ASP 178 B ASN 179 n 214 ASN 179 B MET 180 n 215 MET 180 B PHE 181 n 216 PHE 181 B CYS 182 n 217 CYS 182 B ALA 183 n 218 ALA 183 B GLY 184 n 219 GLY 184 B TYR 184 n 220 A TYR 184 B LYS 185 n 221 LYS 185 B PRO 186 n 222 PRO 186 B ASP 186 n 223 A ASP 186 B GLU 186 n 224 B GLU 186 B GLY 186 n 225 C GLY 186 B LYS 186 n 226 D LYS 186 B ARG 187 n 227 ARG 187 B GLY 188 n 228 GLY 188 B ASP 189 n 229 ASP 189 B ALA 190 n 230 ALA 190 B CYS 191 n 231 CYS 191 B GLU 192 n 232 GLU 192 B GLY 193 n 233 GLY 193 B ASP 194 n 234 ASP 194 B SER 195 n 235 SER 195 B GLY 196 n 236 GLY 196 B GLY 197 n 237 GLY 197 B PRO 198 n 238 PRO 198 B PHE 199 n 239 PHE 199 B VAL 200 n 240 VAL 200 B MET 201 n 241 MET 201 B LYS 202 n 242 LYS 202 B SER 203 n 243 SER 203 B PRO 204 n 244 PRO 204 B PHE 204 n 245 A PHE 204 B ASN 204 n 246 B ASN 204 B ASN 205 n 247 ASN 205 B ARG 206 n 248 ARG 206 B TRP 207 n 249 TRP 207 B TYR 208 n 250 TYR 208 B GLN 209 n 251 GLN 209 B MET 210 n 252 MET 210 B GLY 211 n 253 GLY 211 B ILE 212 n 254 ILE 212 B VAL 213 n 255 VAL 213 B SER 214 n 256 SER 214 B TRP 215 n 257 TRP 215 B GLY 216 n 258 GLY 216 B GLU 217 n 259 GLU 217 B GLY 219 n 260 GLY 219 B CYS 220 n 261 CYS 220 B ASP 221 n 262 ASP 221 B ARG 221 n 263 A ARG 221 B ASP 222 n 264 ASP 222 B GLY 223 n 265 GLY 223 B LYS 224 n 266 LYS 224 B TYR 225 n 267 TYR 225 B GLY 226 n 268 GLY 226 B PHE 227 n 269 PHE 227 B TYR 228 n 270 TYR 228 B THR 229 n 271 THR 229 B HIS 230 n 272 HIS 230 B VAL 231 n 273 VAL 231 B PHE 232 n 274 PHE 232 B ARG 233 n 275 ARG 233 B LEU 234 n 276 LEU 234 B LYS 235 n 277 LYS 235 B LYS 236 n 278 LYS 236 B TRP 237 n 279 TRP 237 B ILE 238 n 280 ILE 238 B GLN 239 n 281 GLN 239 B LYS 240 n 282 LYS 240 B VAL 241 n 283 VAL 241 B ILE 242 n 284 ILE 242 B ASP 243 n 285 ASP 243 B GLN 244 n 286 GLN 244 B PHE 245 n 287 PHE 245 B author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N SER 20 A N SER 35 A O VAL 157 A O VAL 192 A O LEU 160 A O LEU 195 A N GLY 136 A N GLY 166 A N ARG 137 A N ARG 167 A O VAL 200 A O VAL 240 A N SER 203 A N SER 243 A O ARG 206 A O ARG 248 A N TRP 215 A N TRP 257 A O PHE 227 A O PHE 269 A O TYR 228 A O TYR 270 A N PHE 181 A N PHE 216 A O SER 83 A O SER 109 A N VAL 66 A N VAL 91 A O LEU 65 A O LEU 90 A N PHE 34 A N PHE 49 A N ARG 35 A N ARG 50 A O GLU 39 A O GLU 55 A N SER 48 A N SER 64 A O TRP 51 A O TRP 67 A N VAL 52 A N VAL 68 A O MET 106 A O MET 133 A O LEU 105 A O LEU 132 A N TYR 89 A N TYR 115 B N SER 20 B N SER 35 B O VAL 157 B O VAL 192 B O LEU 160 B O LEU 195 B N GLY 136 B N GLY 166 B N ARG 137 B N ARG 167 B O VAL 200 B O VAL 240 B N PHE 199 B N PHE 239 B O GLY 211 B O GLY 253 B N TRP 215 B N TRP 257 B O PHE 227 B O PHE 269 B O TYR 228 B O TYR 270 B N PHE 181 B N PHE 216 B O SER 83 B O SER 109 B N VAL 66 B N VAL 91 B O LEU 65 B O LEU 90 B N PHE 34 B N PHE 49 B N ARG 35 B N ARG 50 B O GLU 39 B O GLU 55 B N SER 45 B N SER 61 B O LEU 53 B O LEU 69 B N VAL 52 B N VAL 68 B O MET 106 B O MET 133 B O LEU 105 B O LEU 132 B N TYR 89 B N TYR 115 1 A CG ARG 75 A CG ARG 100 1 Y 1 A CD ARG 75 A CD ARG 100 1 Y 1 A NE ARG 75 A NE ARG 100 1 Y 1 A CZ ARG 75 A CZ ARG 100 1 Y 1 A NH1 ARG 75 A NH1 ARG 100 1 Y 1 A NH2 ARG 75 A NH2 ARG 100 1 Y 1 A CG LYS 145 A CG LYS 175 1 Y 1 A CD LYS 145 A CD LYS 175 1 Y 1 A CE LYS 145 A CE LYS 175 1 Y 1 A NZ LYS 145 A NZ LYS 175 1 Y 1 A CG LYS 240 A CG LYS 282 1 Y 1 A CD LYS 240 A CD LYS 282 1 Y 1 A CE LYS 240 A CE LYS 282 1 Y 1 A NZ LYS 240 A NZ LYS 282 1 Y 1 B CG LYS 145 B CG LYS 175 1 Y 1 B CD LYS 145 B CD LYS 175 1 Y 1 B CE LYS 145 B CE LYS 175 1 Y 1 B NZ LYS 145 B NZ LYS 175 1 Y 1 A O1 NAG 600 C O1 NAG 1 1 N 1 B O1 NAG 700 D O1 NAG 1 1 N L 1 A ASP 14 A ASP 28 1 Y M 1 A GLY 14 A GLY 29 1 Y 1 A ARG 15 A ARG 30 1 Y A 1 A TRP 147 A TRP 178 1 Y B 1 A THR 147 A THR 179 1 Y C 1 A ALA 147 A ALA 180 1 Y D 1 A ASN 147 A ASN 181 1 Y E 1 A VAL 147 A VAL 182 1 Y F 1 A GLY 147 A GLY 183 1 Y G 1 A LYS 147 A LYS 184 1 Y L 1 B ASP 14 B ASP 28 1 Y M 1 B GLY 14 B GLY 29 1 Y 1 B ARG 15 B ARG 30 1 Y A 1 B TRP 147 B TRP 178 1 Y B 1 B THR 147 B THR 179 1 Y C 1 B ALA 147 B ALA 180 1 Y D 1 B ASN 147 B ASN 181 1 Y E 1 B VAL 147 B VAL 182 1 Y F 1 B GLY 147 B GLY 183 1 Y G 1 B LYS 147 B LYS 184 1 Y B 1 B B O N ASN ARG 204 206 2.17 1 A PHE 7 -139.75 -89.47 H 1 A GLU 14 -55.35 0.08 1 A SER 27 -141.39 58.71 1 A GLU 39 -171.72 143.51 1 A SER 48 166.39 145.31 1 A ASP 49 -44.32 -17.73 A 1 A TYR 60 -160.99 88.87 C 1 A PRO 60 -35.73 -35.09 G 1 A ASN 60 -167.69 63.16 1 A HIS 71 -153.10 -50.46 1 A THR 74 -120.10 -51.94 1 A GLU 77 -66.89 85.74 A 1 A ALA 77 -34.42 -82.08 1 A ASN 78 -90.74 37.77 1 A ILE 79 -128.90 -68.49 A 1 A GLU 97 -124.50 -62.65 1 A ASN 98 -148.16 39.34 1 A SER 214 -103.00 -73.31 1 A CYS 220 -161.28 105.16 1 A GLN 244 -66.30 5.08 1 B PHE 7 -140.52 -87.95 1 B SER 27 -158.53 57.62 1 B PRO 28 -63.48 1.47 1 B GLU 39 -171.76 142.02 1 B ALA 44 -170.34 -171.19 A 1 B TYR 60 -164.00 88.18 C 1 B PRO 60 -35.09 -35.41 G 1 B ASN 60 -167.72 63.50 1 B GLU 61 -36.35 -32.51 1 B HIS 71 -131.13 -49.52 1 B GLU 77 -69.64 86.96 A 1 B ALA 77 -35.02 -79.06 1 B ASN 78 -96.56 44.07 1 B ILE 79 -139.40 -63.95 1 B ARG 93 -89.44 39.36 A 1 B GLU 97 -145.87 -52.28 1 B ASN 98 -145.38 20.38 1 B ARG 101 70.23 43.94 1 B ALA 104 -170.45 136.83 1 B LYS 145 -164.90 -168.34 1 B VAL 158 -169.99 118.92 1 B ARG 187 -115.35 -151.70 1 B GLU 192 -31.94 132.75 1 B ASN 205 -36.64 58.01 1 B SER 214 -100.73 -77.05 1 B GLU 217 -99.50 34.76 1 B HIS 230 -64.89 93.93 1 B ARG 233 -47.07 -12.82 1 B GLN 244 -66.29 4.81 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP NAG.PARAM NAG.TOPO 38.9 15.87 0.00 0.00 -1.17 0.00 -14.71 The mismatched residues R75, K145, K240 (A chain) and K145 (B chain) were modelled as Alanines due to poor electron density 0.275 0.008 0.219 0.2191 0.2191 2.80 29.75 1056 16543 15367 6.9 84.2 RANDOM 1 RESTRAINED THROUGHOUT 0 MOLECULAR REPLACEMENT PDB Entry 1PPB Engh & Huber FLAT MODEL 20.6116 0.320496 0.48 0.74 2.80 29.75 111 4605 28 0 4466 0.008 1.4 24.5 0.92 0.432 0.039 0.375 2.98 123 1837 16577 6 6.3 66.0 -0.5 2.80 30 1MH0 16577 2 1 1 90.9 data collection HKL-2000 data scaling SCALEPACK refinement CNS data reduction HKL-2000 phasing CNS Crystal structure of the anticoagulant slow form of thrombin 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A PHE 7 A PHE 9 HELX_P A SER 11 A SER 13 5 1 5 A THR 14 A THR 18 HELX_P A GLU 14 A GLU 24 1 2 7 B H A PRO 60 A PRO 78 HELX_P A ASP 60 A ASP 81 5 3 4 B E A ASP 125 A ASP 152 HELX_P A LEU 130 A LEU 160 1 4 9 A GLU 164 A GLU 199 HELX_P A ASP 170 A ASP 205 1 5 7 A VAL 231 A VAL 273 HELX_P A ARG 233 A ARG 275 5 6 3 A LEU 234 A LEU 276 HELX_P A GLN 244 A GLN 286 1 7 11 B PHE 7 B PHE 9 HELX_P B SER 11 B SER 13 5 8 5 B THR 14 B THR 18 HELX_P B GLU 14 B GLU 24 1 9 7 B H B SER 14 B SER 25 HELX_P B ILE 14 B ILE 27 5 10 3 I K B ALA 55 B ALA 71 HELX_P B CYS 58 B CYS 74 5 11 4 B PRO 60 B PRO 78 HELX_P B ASP 60 B ASP 81 5 12 4 B E B ASP 125 B ASP 152 HELX_P B LEU 130 B LEU 160 1 13 9 B GLU 164 B GLU 199 HELX_P B ASP 170 B ASP 205 1 14 7 B LEU 234 B LEU 276 HELX_P B GLN 244 B GLN 286 1 15 11 disulf 2.036 A CYS 1 A SG CYS 3 1_555 A CYS 122 A SG CYS 149 1_555 disulf 2.037 A CYS 42 A SG CYS 58 1_555 A CYS 58 A SG CYS 74 1_555 disulf 2.027 A CYS 168 A SG CYS 203 1_555 A CYS 182 A SG CYS 217 1_555 disulf 2.038 A CYS 191 A SG CYS 231 1_555 A CYS 220 A SG CYS 261 1_555 disulf 2.044 B CYS 1 B SG CYS 3 1_555 B CYS 122 B SG CYS 149 1_555 disulf 2.033 B CYS 42 B SG CYS 58 1_555 B CYS 58 B SG CYS 74 1_555 disulf 2.042 B CYS 168 B SG CYS 203 1_555 B CYS 182 B SG CYS 217 1_555 disulf 2.040 B CYS 191 B SG CYS 231 1_555 B CYS 220 B SG CYS 261 1_555 BLOOD CLOTTING thrombin, allostery, sodium binding, serine protease, BLOOD CLOTTING A SER 36 A SER 52 A 1 A PRO 37 A PRO 53 -0.42 B SER 36 B SER 52 A 1 B PRO 37 B PRO 53 -0.09 THRB_HUMAN UNP 1 334 P00734 ADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPW DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQF 334 620 1MH0 1 245 P00734 B A 1 1 287 334 620 1MH0 1 245 P00734 B B 1 1 287 1 ARG engineered mutation ALA 77 1MH0 A A P00734 UNP 436 103 2 ARG engineered mutation ALA 77 1MH0 A B P00734 UNP 436 103 7 7 7 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A SER 20 A SER 35 A ASP 21 A ASP 36 A GLN 156 A GLN 191 A PRO 161 A PRO 196 A LYS 135 A LYS 165 A GLY 140 A GLY 170 A PRO 198 A PRO 238 A SER 203 A SER 243 A ARG 206 A ARG 248 A GLY 216 A GLY 258 A GLY 226 A GLY 268 A THR 229 A THR 271 A MET 180 A MET 215 A ALA 183 A ALA 218 A LYS 81 A LYS 107 A SER 83 A SER 109 A LEU 64 A LEU 89 A ILE 68 A ILE 93 A GLN 30 A GLN 45 A ARG 35 A ARG 50 A GLU 39 A GLU 55 A SER 48 A SER 64 A TRP 51 A TRP 67 A THR 54 A THR 70 A ALA 104 A ALA 131 A LEU 108 A LEU 135 A LEU 85 A LEU 111 A ILE 90 A ILE 116 B SER 20 B SER 35 B ASP 21 B ASP 36 B GLN 156 B GLN 191 B PRO 161 B PRO 196 B LYS 135 B LYS 165 B GLY 140 B GLY 170 B PRO 198 B PRO 238 B LYS 202 B LYS 242 B TRP 207 B TRP 249 B TRP 215 B TRP 257 B GLY 226 B GLY 268 B HIS 230 B HIS 272 B MET 180 B MET 215 B ALA 183 B ALA 218 B LYS 81 B LYS 107 B SER 83 B SER 109 B LEU 64 B LEU 89 B ILE 68 B ILE 93 B GLN 30 B GLN 45 B ARG 35 B ARG 50 B GLU 39 B GLU 55 B SER 48 B SER 64 B TRP 51 B TRP 67 B THR 54 B THR 70 B ALA 104 B ALA 131 B LEU 108 B LEU 135 B LEU 85 B LEU 111 B ILE 90 B ILE 116 19 orthorhombic P 21 21 21