0.023387
0.000000
0.000000
0.000000
0.023387
0.000000
0.000000
0.000000
0.015203
0.00000
0.00000
0.00000
Jabeen, T.
Jasti, J.
Singh, R.K.
Sujata, S.
Singh, T.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
42.758
42.758
65.777
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Crystal Structure of a Calcium-Free Isoform of Phospholipase A2 from Naja naja sagittifera at 2.0 A Resolution
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
MONOCHRMOATOR
IMAGE PLATE
2002-06-01
MARRESEARCH
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
13319.810
PHOSPHOLIPASE A2
3.1.1.4
1
nat
polymer
18.015
water
74
nat
water
no
no
NLYQFKNMIECTVPARSWWDFADYGCYCGGGGSGTPTDDLDRCCQVHDNCYNQAQEITGCRPKWKTYTYQCTQGTLTCKG
RNNSCAATTCDCDRLAAICFAGAPYNDTNYNIDLKARCQ
NLYQFKNMIECTVPARSWWDFADYGCYCGGGGSGTPTDDLDRCCQVHDNCYNQAQEITGCRPKWKTYTYQCTQGTLTCKG
RNNSCAATTCDCDRLAAICFAGAPYNDTNYNIDLKARCQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Naja
sample
195058
Naja sagittifera
VENOM
1
2.26
45.49
VAPOR DIFFUSION, SITTING DROP
6.5
10 mM SODIUM PHOSPHATE, 2mM CaCl2, 28% ETHANOL, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
repository
Initial release
Version format compliance
Version format compliance
1
0
2003-05-20
1
1
2008-04-28
1
2
2011-07-13
1LFJ IS THE X-ray crystal structure of a complex formed between two homologous isoforms of phospholipase A2 from Naja naja sagittifera: Principle of molecular association and Inactivation
1LFF IS THE Crystal structure of an Acidic Phospholipase A2 from Naja naja sagittifera at 1.5 A resolution
1LN8 IS THE Crystal structure of a new isoform of phospholipase A2 from Naja naja sagittifera at 1.6 A resolution
1MF4 IS THE Structure-based design of potent and selective inhibitors of phospholipase A2: Crystal structure of the complex formed between phospholipase A2 from Naja naja sagittifera and a designed peptide inhibitor at 1.9 A resolution
RCSB
Y
RCSB
2002-08-19
REL
HOH
water
HOH
1
2
HOH
HOH
121
A
HOH
2
2
HOH
HOH
122
A
HOH
3
2
HOH
HOH
123
A
HOH
4
2
HOH
HOH
124
A
HOH
5
2
HOH
HOH
125
A
HOH
6
2
HOH
HOH
126
A
HOH
7
2
HOH
HOH
127
A
HOH
8
2
HOH
HOH
128
A
HOH
9
2
HOH
HOH
129
A
HOH
10
2
HOH
HOH
130
A
HOH
11
2
HOH
HOH
131
A
HOH
12
2
HOH
HOH
132
A
HOH
13
2
HOH
HOH
133
A
HOH
14
2
HOH
HOH
134
A
HOH
15
2
HOH
HOH
135
A
HOH
16
2
HOH
HOH
136
A
HOH
17
2
HOH
HOH
137
A
HOH
18
2
HOH
HOH
138
A
HOH
19
2
HOH
HOH
139
A
HOH
20
2
HOH
HOH
140
A
HOH
21
2
HOH
HOH
141
A
HOH
22
2
HOH
HOH
142
A
HOH
23
2
HOH
HOH
143
A
HOH
24
2
HOH
HOH
144
A
HOH
25
2
HOH
HOH
145
A
HOH
26
2
HOH
HOH
146
A
HOH
27
2
HOH
HOH
147
A
HOH
28
2
HOH
HOH
148
A
HOH
29
2
HOH
HOH
149
A
HOH
30
2
HOH
HOH
150
A
HOH
31
2
HOH
HOH
151
A
HOH
32
2
HOH
HOH
152
A
HOH
33
2
HOH
HOH
153
A
HOH
34
2
HOH
HOH
154
A
HOH
35
2
HOH
HOH
155
A
HOH
36
2
HOH
HOH
156
A
HOH
37
2
HOH
HOH
157
A
HOH
38
2
HOH
HOH
158
A
HOH
39
2
HOH
HOH
159
A
HOH
40
2
HOH
HOH
160
A
HOH
41
2
HOH
HOH
161
A
HOH
42
2
HOH
HOH
162
A
HOH
43
2
HOH
HOH
163
A
HOH
44
2
HOH
HOH
164
A
HOH
45
2
HOH
HOH
165
A
HOH
46
2
HOH
HOH
166
A
HOH
47
2
HOH
HOH
167
A
HOH
48
2
HOH
HOH
168
A
HOH
49
2
HOH
HOH
169
A
HOH
50
2
HOH
HOH
170
A
HOH
51
2
HOH
HOH
171
A
HOH
52
2
HOH
HOH
172
A
HOH
53
2
HOH
HOH
173
A
HOH
54
2
HOH
HOH
174
A
HOH
55
2
HOH
HOH
175
A
HOH
56
2
HOH
HOH
176
A
HOH
57
2
HOH
HOH
177
A
HOH
58
2
HOH
HOH
178
A
HOH
59
2
HOH
HOH
179
A
HOH
60
2
HOH
HOH
180
A
HOH
61
2
HOH
HOH
181
A
HOH
62
2
HOH
HOH
182
A
HOH
63
2
HOH
HOH
183
A
HOH
64
2
HOH
HOH
184
A
HOH
65
2
HOH
HOH
185
A
HOH
66
2
HOH
HOH
186
A
HOH
67
2
HOH
HOH
187
A
HOH
68
2
HOH
HOH
188
A
HOH
69
2
HOH
HOH
189
A
HOH
70
2
HOH
HOH
190
A
HOH
71
2
HOH
HOH
191
A
HOH
72
2
HOH
HOH
192
A
HOH
73
2
HOH
HOH
193
A
HOH
74
2
HOH
HOH
194
A
ASN
1
n
1
ASN
1
A
LEU
2
n
2
LEU
2
A
TYR
3
n
3
TYR
3
A
GLN
4
n
4
GLN
4
A
PHE
5
n
5
PHE
5
A
LYS
6
n
6
LYS
6
A
ASN
7
n
7
ASN
7
A
MET
8
n
8
MET
8
A
ILE
9
n
9
ILE
9
A
GLU
10
n
10
GLU
10
A
CYS
11
n
11
CYS
11
A
THR
12
n
12
THR
12
A
VAL
13
n
13
VAL
13
A
PRO
14
n
14
PRO
14
A
ALA
15
n
15
ALA
15
A
ARG
17
n
16
ARG
17
A
SER
18
n
17
SER
18
A
TRP
19
n
18
TRP
19
A
TRP
20
n
19
TRP
20
A
ASP
21
n
20
ASP
21
A
PHE
22
n
21
PHE
22
A
ALA
23
n
22
ALA
23
A
ASP
24
n
23
ASP
24
A
TYR
25
n
24
TYR
25
A
GLY
26
n
25
GLY
26
A
CYS
27
n
26
CYS
27
A
TYR
28
n
27
TYR
28
A
CYS
29
n
28
CYS
29
A
GLY
30
n
29
GLY
30
A
GLY
31
n
30
GLY
31
A
GLY
32
n
31
GLY
32
A
GLY
33
n
32
GLY
33
A
SER
34
n
33
SER
34
A
GLY
35
n
34
GLY
35
A
THR
36
n
35
THR
36
A
PRO
37
n
36
PRO
37
A
THR
38
n
37
THR
38
A
ASP
39
n
38
ASP
39
A
ASP
40
n
39
ASP
40
A
LEU
41
n
40
LEU
41
A
ASP
42
n
41
ASP
42
A
ARG
43
n
42
ARG
43
A
CYS
44
n
43
CYS
44
A
CYS
45
n
44
CYS
45
A
GLN
46
n
45
GLN
46
A
VAL
47
n
46
VAL
47
A
HIS
48
n
47
HIS
48
A
ASP
49
n
48
ASP
49
A
ASN
50
n
49
ASN
50
A
CYS
51
n
50
CYS
51
A
TYR
52
n
51
TYR
52
A
ASN
53
n
52
ASN
53
A
GLN
54
n
53
GLN
54
A
ALA
55
n
54
ALA
55
A
GLN
56
n
55
GLN
56
A
GLU
57
n
56
GLU
57
A
ILE
58
n
57
ILE
58
A
THR
59
n
58
THR
59
A
GLY
60
n
59
GLY
60
A
CYS
61
n
60
CYS
61
A
ARG
62
n
61
ARG
62
A
PRO
63
n
62
PRO
63
A
LYS
64
n
63
LYS
64
A
TRP
65
n
64
TRP
65
A
LYS
66
n
65
LYS
66
A
THR
67
n
66
THR
67
A
TYR
68
n
67
TYR
68
A
THR
69
n
68
THR
69
A
TYR
70
n
69
TYR
70
A
GLN
71
n
70
GLN
71
A
CYS
72
n
71
CYS
72
A
THR
73
n
72
THR
73
A
GLN
74
n
73
GLN
74
A
GLY
75
n
74
GLY
75
A
THR
76
n
75
THR
76
A
LEU
77
n
76
LEU
77
A
THR
78
n
77
THR
78
A
CYS
79
n
78
CYS
79
A
LYS
80
n
79
LYS
80
A
GLY
81
n
80
GLY
81
A
ARG
82
n
81
ARG
82
A
ASN
83
n
82
ASN
83
A
ASN
84
n
83
ASN
84
A
SER
85
n
84
SER
85
A
CYS
86
n
85
CYS
86
A
ALA
87
n
86
ALA
87
A
ALA
88
n
87
ALA
88
A
THR
89
n
88
THR
89
A
THR
90
n
89
THR
90
A
CYS
91
n
90
CYS
91
A
ASP
92
n
91
ASP
92
A
CYS
93
n
92
CYS
93
A
ASP
94
n
93
ASP
94
A
ARG
95
n
94
ARG
95
A
LEU
96
n
95
LEU
96
A
ALA
97
n
96
ALA
97
A
ALA
98
n
97
ALA
98
A
ILE
99
n
98
ILE
99
A
CYS
100
n
99
CYS
100
A
PHE
101
n
100
PHE
101
A
ALA
102
n
101
ALA
102
A
GLY
103
n
102
GLY
103
A
ALA
104
n
103
ALA
104
A
PRO
105
n
104
PRO
105
A
TYR
106
n
105
TYR
106
A
ASN
107
n
106
ASN
107
A
ASP
108
n
107
ASP
108
A
THR
109
n
108
THR
109
A
ASN
110
n
109
ASN
110
A
TYR
111
n
110
TYR
111
A
ASN
112
n
111
ASN
112
A
ILE
113
n
112
ILE
113
A
ASP
114
n
113
ASP
114
A
LEU
115
n
114
LEU
115
A
LYS
116
n
115
LYS
116
A
ALA
117
n
116
ALA
117
A
ARG
118
n
117
ARG
118
A
CYS
119
n
118
CYS
119
A
GLN
120
n
119
GLN
120
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
25
A
N
TYR
24
A
O
CYS
29
A
O
CYS
28
A
N
GLN
71
A
N
GLN
70
A
O
THR
78
A
O
THR
77
1
-13.37
2.00
110.40
97.03
A
A
A
N
CA
CB
LEU
LEU
LEU
2
2
2
N
1
-15.10
2.30
115.30
100.20
A
A
A
CA
CB
CG
LEU
LEU
LEU
2
2
2
N
1
14.16
2.00
110.40
124.56
A
A
A
CB
CA
C
ARG
ARG
ARG
82
82
82
N
1
3.63
0.50
120.30
123.93
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
82
82
82
N
1
15.25
2.10
109.00
124.25
A
A
A
CA
CB
OG1
THR
THR
THR
90
90
90
N
1
10.07
1.40
112.40
122.47
A
A
A
CA
CB
CG2
THR
THR
THR
90
90
90
N
1
A
ALA
15
-80.69
36.57
1
A
ARG
17
-170.40
149.44
1
A
ASP
24
-154.96
75.61
PROTEIN_REP.PARAM
PROTEIN.TOP
ION.PARAM
WATER.TOP
WATER_REP.PARAM
25.2
0.22
0.011
0.199
0.224
2.00
20.00
399
7594
7594
5.3
97.6
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
1LFJ
Engh & Huber
FLAT MODEL
34.06
0.265159
0.22
0.21
5.0
0.16
0.13
2.00
20.00
74
998
0
0
924
0.008
1.6
23.1
1.49
1.57
1.50
2.43
2.00
2.80
2.00
4.19
2.50
0.232
0.033
0.218
2.13
50
932
932
6
5.1
73.9
21.8
2.0
20.0
1MH7
7717
0
-3
0.084
0.083
1
22.1
6.4
97
0.23
2.0
2.07
2.7
494
0.237
4.6
82
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
0.9
PHOSPHOLIPASE A2 (E.C.3.1.1.4)
Crystal Structure of a Calcium-Free Isoform of Phospholipase A2 from Naja naja sagittifera at 2.0 A Resolution
1
N
N
2
N
N
A
ASN
1
A
ASN
1
HELX_P
A
VAL
13
A
VAL
13
1
1
13
A
SER
18
A
SER
17
HELX_P
A
PHE
22
A
PHE
21
5
2
5
A
ASP
39
A
ASP
38
HELX_P
A
GLN
56
A
GLN
55
1
3
18
A
ASN
84
A
ASN
83
HELX_P
A
ALA
104
A
ALA
103
1
4
21
A
ASN
107
A
ASN
106
HELX_P
A
TYR
111
A
TYR
110
5
5
5
A
ASP
114
A
ASP
113
HELX_P
A
CYS
119
A
CYS
118
1
6
6
disulf
2.004
A
CYS
11
A
SG
CYS
11
1_555
A
CYS
72
A
SG
CYS
71
1_555
disulf
2.027
A
CYS
27
A
SG
CYS
26
1_555
A
CYS
119
A
SG
CYS
118
1_555
disulf
2.030
A
CYS
29
A
SG
CYS
28
1_555
A
CYS
45
A
SG
CYS
44
1_555
disulf
2.026
A
CYS
44
A
SG
CYS
43
1_555
A
CYS
100
A
SG
CYS
99
1_555
disulf
2.028
A
CYS
51
A
SG
CYS
50
1_555
A
CYS
93
A
SG
CYS
92
1_555
disulf
2.024
A
CYS
61
A
SG
CYS
60
1_555
A
CYS
86
A
SG
CYS
85
1_555
disulf
2.027
A
CYS
79
A
SG
CYS
78
1_555
A
CYS
91
A
SG
CYS
90
1_555
HYDROLASE
PHOSPHOLIPASE, ENZYME, PHOSPHOLIPIDS, HYDROLASE
PA21B_NAJSG
UNP
1
8
P60043
8
126
1MH7
1
120
P60043
A
1
1
119
2
2
anti-parallel
anti-parallel
A
ASP
24
A
ASP
23
A
TYR
25
A
TYR
24
A
CYS
29
A
CYS
28
A
GLY
30
A
GLY
29
A
TYR
70
A
TYR
69
A
THR
73
A
THR
72
A
THR
76
A
THR
75
A
CYS
79
A
CYS
78
76
P 41