0.023387 0.000000 0.000000 0.000000 0.023387 0.000000 0.000000 0.000000 0.015203 0.00000 0.00000 0.00000 Jabeen, T. Jasti, J. Singh, R.K. Sujata, S. Singh, T.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 42.758 42.758 65.777 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Crystal Structure of a Calcium-Free Isoform of Phospholipase A2 from Naja naja sagittifera at 2.0 A Resolution 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 MONOCHRMOATOR IMAGE PLATE 2002-06-01 MARRESEARCH GRAPHITE SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 13319.810 PHOSPHOLIPASE A2 3.1.1.4 1 nat polymer 18.015 water 74 nat water no no NLYQFKNMIECTVPARSWWDFADYGCYCGGGGSGTPTDDLDRCCQVHDNCYNQAQEITGCRPKWKTYTYQCTQGTLTCKG RNNSCAATTCDCDRLAAICFAGAPYNDTNYNIDLKARCQ NLYQFKNMIECTVPARSWWDFADYGCYCGGGGSGTPTDDLDRCCQVHDNCYNQAQEITGCRPKWKTYTYQCTQGTLTCKG RNNSCAATTCDCDRLAAICFAGAPYNDTNYNIDLKARCQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Naja sample 195058 Naja sagittifera VENOM 1 2.26 45.49 VAPOR DIFFUSION, SITTING DROP 6.5 10 mM SODIUM PHOSPHATE, 2mM CaCl2, 28% ETHANOL, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 repository Initial release Version format compliance Version format compliance 1 0 2003-05-20 1 1 2008-04-28 1 2 2011-07-13 1LFJ IS THE X-ray crystal structure of a complex formed between two homologous isoforms of phospholipase A2 from Naja naja sagittifera: Principle of molecular association and Inactivation 1LFF IS THE Crystal structure of an Acidic Phospholipase A2 from Naja naja sagittifera at 1.5 A resolution 1LN8 IS THE Crystal structure of a new isoform of phospholipase A2 from Naja naja sagittifera at 1.6 A resolution 1MF4 IS THE Structure-based design of potent and selective inhibitors of phospholipase A2: Crystal structure of the complex formed between phospholipase A2 from Naja naja sagittifera and a designed peptide inhibitor at 1.9 A resolution RCSB Y RCSB 2002-08-19 REL HOH water HOH 1 2 HOH HOH 121 A HOH 2 2 HOH HOH 122 A HOH 3 2 HOH HOH 123 A HOH 4 2 HOH HOH 124 A HOH 5 2 HOH HOH 125 A HOH 6 2 HOH HOH 126 A HOH 7 2 HOH HOH 127 A HOH 8 2 HOH HOH 128 A HOH 9 2 HOH HOH 129 A HOH 10 2 HOH HOH 130 A HOH 11 2 HOH HOH 131 A HOH 12 2 HOH HOH 132 A HOH 13 2 HOH HOH 133 A HOH 14 2 HOH HOH 134 A HOH 15 2 HOH HOH 135 A HOH 16 2 HOH HOH 136 A HOH 17 2 HOH HOH 137 A HOH 18 2 HOH HOH 138 A HOH 19 2 HOH HOH 139 A HOH 20 2 HOH HOH 140 A HOH 21 2 HOH HOH 141 A HOH 22 2 HOH HOH 142 A HOH 23 2 HOH HOH 143 A HOH 24 2 HOH HOH 144 A HOH 25 2 HOH HOH 145 A HOH 26 2 HOH HOH 146 A HOH 27 2 HOH HOH 147 A HOH 28 2 HOH HOH 148 A HOH 29 2 HOH HOH 149 A HOH 30 2 HOH HOH 150 A HOH 31 2 HOH HOH 151 A HOH 32 2 HOH HOH 152 A HOH 33 2 HOH HOH 153 A HOH 34 2 HOH HOH 154 A HOH 35 2 HOH HOH 155 A HOH 36 2 HOH HOH 156 A HOH 37 2 HOH HOH 157 A HOH 38 2 HOH HOH 158 A HOH 39 2 HOH HOH 159 A HOH 40 2 HOH HOH 160 A HOH 41 2 HOH HOH 161 A HOH 42 2 HOH HOH 162 A HOH 43 2 HOH HOH 163 A HOH 44 2 HOH HOH 164 A HOH 45 2 HOH HOH 165 A HOH 46 2 HOH HOH 166 A HOH 47 2 HOH HOH 167 A HOH 48 2 HOH HOH 168 A HOH 49 2 HOH HOH 169 A HOH 50 2 HOH HOH 170 A HOH 51 2 HOH HOH 171 A HOH 52 2 HOH HOH 172 A HOH 53 2 HOH HOH 173 A HOH 54 2 HOH HOH 174 A HOH 55 2 HOH HOH 175 A HOH 56 2 HOH HOH 176 A HOH 57 2 HOH HOH 177 A HOH 58 2 HOH HOH 178 A HOH 59 2 HOH HOH 179 A HOH 60 2 HOH HOH 180 A HOH 61 2 HOH HOH 181 A HOH 62 2 HOH HOH 182 A HOH 63 2 HOH HOH 183 A HOH 64 2 HOH HOH 184 A HOH 65 2 HOH HOH 185 A HOH 66 2 HOH HOH 186 A HOH 67 2 HOH HOH 187 A HOH 68 2 HOH HOH 188 A HOH 69 2 HOH HOH 189 A HOH 70 2 HOH HOH 190 A HOH 71 2 HOH HOH 191 A HOH 72 2 HOH HOH 192 A HOH 73 2 HOH HOH 193 A HOH 74 2 HOH HOH 194 A ASN 1 n 1 ASN 1 A LEU 2 n 2 LEU 2 A TYR 3 n 3 TYR 3 A GLN 4 n 4 GLN 4 A PHE 5 n 5 PHE 5 A LYS 6 n 6 LYS 6 A ASN 7 n 7 ASN 7 A MET 8 n 8 MET 8 A ILE 9 n 9 ILE 9 A GLU 10 n 10 GLU 10 A CYS 11 n 11 CYS 11 A THR 12 n 12 THR 12 A VAL 13 n 13 VAL 13 A PRO 14 n 14 PRO 14 A ALA 15 n 15 ALA 15 A ARG 17 n 16 ARG 17 A SER 18 n 17 SER 18 A TRP 19 n 18 TRP 19 A TRP 20 n 19 TRP 20 A ASP 21 n 20 ASP 21 A PHE 22 n 21 PHE 22 A ALA 23 n 22 ALA 23 A ASP 24 n 23 ASP 24 A TYR 25 n 24 TYR 25 A GLY 26 n 25 GLY 26 A CYS 27 n 26 CYS 27 A TYR 28 n 27 TYR 28 A CYS 29 n 28 CYS 29 A GLY 30 n 29 GLY 30 A GLY 31 n 30 GLY 31 A GLY 32 n 31 GLY 32 A GLY 33 n 32 GLY 33 A SER 34 n 33 SER 34 A GLY 35 n 34 GLY 35 A THR 36 n 35 THR 36 A PRO 37 n 36 PRO 37 A THR 38 n 37 THR 38 A ASP 39 n 38 ASP 39 A ASP 40 n 39 ASP 40 A LEU 41 n 40 LEU 41 A ASP 42 n 41 ASP 42 A ARG 43 n 42 ARG 43 A CYS 44 n 43 CYS 44 A CYS 45 n 44 CYS 45 A GLN 46 n 45 GLN 46 A VAL 47 n 46 VAL 47 A HIS 48 n 47 HIS 48 A ASP 49 n 48 ASP 49 A ASN 50 n 49 ASN 50 A CYS 51 n 50 CYS 51 A TYR 52 n 51 TYR 52 A ASN 53 n 52 ASN 53 A GLN 54 n 53 GLN 54 A ALA 55 n 54 ALA 55 A GLN 56 n 55 GLN 56 A GLU 57 n 56 GLU 57 A ILE 58 n 57 ILE 58 A THR 59 n 58 THR 59 A GLY 60 n 59 GLY 60 A CYS 61 n 60 CYS 61 A ARG 62 n 61 ARG 62 A PRO 63 n 62 PRO 63 A LYS 64 n 63 LYS 64 A TRP 65 n 64 TRP 65 A LYS 66 n 65 LYS 66 A THR 67 n 66 THR 67 A TYR 68 n 67 TYR 68 A THR 69 n 68 THR 69 A TYR 70 n 69 TYR 70 A GLN 71 n 70 GLN 71 A CYS 72 n 71 CYS 72 A THR 73 n 72 THR 73 A GLN 74 n 73 GLN 74 A GLY 75 n 74 GLY 75 A THR 76 n 75 THR 76 A LEU 77 n 76 LEU 77 A THR 78 n 77 THR 78 A CYS 79 n 78 CYS 79 A LYS 80 n 79 LYS 80 A GLY 81 n 80 GLY 81 A ARG 82 n 81 ARG 82 A ASN 83 n 82 ASN 83 A ASN 84 n 83 ASN 84 A SER 85 n 84 SER 85 A CYS 86 n 85 CYS 86 A ALA 87 n 86 ALA 87 A ALA 88 n 87 ALA 88 A THR 89 n 88 THR 89 A THR 90 n 89 THR 90 A CYS 91 n 90 CYS 91 A ASP 92 n 91 ASP 92 A CYS 93 n 92 CYS 93 A ASP 94 n 93 ASP 94 A ARG 95 n 94 ARG 95 A LEU 96 n 95 LEU 96 A ALA 97 n 96 ALA 97 A ALA 98 n 97 ALA 98 A ILE 99 n 98 ILE 99 A CYS 100 n 99 CYS 100 A PHE 101 n 100 PHE 101 A ALA 102 n 101 ALA 102 A GLY 103 n 102 GLY 103 A ALA 104 n 103 ALA 104 A PRO 105 n 104 PRO 105 A TYR 106 n 105 TYR 106 A ASN 107 n 106 ASN 107 A ASP 108 n 107 ASP 108 A THR 109 n 108 THR 109 A ASN 110 n 109 ASN 110 A TYR 111 n 110 TYR 111 A ASN 112 n 111 ASN 112 A ILE 113 n 112 ILE 113 A ASP 114 n 113 ASP 114 A LEU 115 n 114 LEU 115 A LYS 116 n 115 LYS 116 A ALA 117 n 116 ALA 117 A ARG 118 n 117 ARG 118 A CYS 119 n 118 CYS 119 A GLN 120 n 119 GLN 120 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 25 A N TYR 24 A O CYS 29 A O CYS 28 A N GLN 71 A N GLN 70 A O THR 78 A O THR 77 1 -13.37 2.00 110.40 97.03 A A A N CA CB LEU LEU LEU 2 2 2 N 1 -15.10 2.30 115.30 100.20 A A A CA CB CG LEU LEU LEU 2 2 2 N 1 14.16 2.00 110.40 124.56 A A A CB CA C ARG ARG ARG 82 82 82 N 1 3.63 0.50 120.30 123.93 A A A NE CZ NH2 ARG ARG ARG 82 82 82 N 1 15.25 2.10 109.00 124.25 A A A CA CB OG1 THR THR THR 90 90 90 N 1 10.07 1.40 112.40 122.47 A A A CA CB CG2 THR THR THR 90 90 90 N 1 A ALA 15 -80.69 36.57 1 A ARG 17 -170.40 149.44 1 A ASP 24 -154.96 75.61 PROTEIN_REP.PARAM PROTEIN.TOP ION.PARAM WATER.TOP WATER_REP.PARAM 25.2 0.22 0.011 0.199 0.224 2.00 20.00 399 7594 7594 5.3 97.6 RANDOM 1 RESTRAINED THROUGHOUT 0.0 0.0 MOLECULAR REPLACEMENT 1LFJ Engh & Huber FLAT MODEL 34.06 0.265159 0.22 0.21 5.0 0.16 0.13 2.00 20.00 74 998 0 0 924 0.008 1.6 23.1 1.49 1.57 1.50 2.43 2.00 2.80 2.00 4.19 2.50 0.232 0.033 0.218 2.13 50 932 932 6 5.1 73.9 21.8 2.0 20.0 1MH7 7717 0 -3 0.084 0.083 1 22.1 6.4 97 0.23 2.0 2.07 2.7 494 0.237 4.6 82 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement CNS 0.9 PHOSPHOLIPASE A2 (E.C.3.1.1.4) Crystal Structure of a Calcium-Free Isoform of Phospholipase A2 from Naja naja sagittifera at 2.0 A Resolution 1 N N 2 N N A ASN 1 A ASN 1 HELX_P A VAL 13 A VAL 13 1 1 13 A SER 18 A SER 17 HELX_P A PHE 22 A PHE 21 5 2 5 A ASP 39 A ASP 38 HELX_P A GLN 56 A GLN 55 1 3 18 A ASN 84 A ASN 83 HELX_P A ALA 104 A ALA 103 1 4 21 A ASN 107 A ASN 106 HELX_P A TYR 111 A TYR 110 5 5 5 A ASP 114 A ASP 113 HELX_P A CYS 119 A CYS 118 1 6 6 disulf 2.004 A CYS 11 A SG CYS 11 1_555 A CYS 72 A SG CYS 71 1_555 disulf 2.027 A CYS 27 A SG CYS 26 1_555 A CYS 119 A SG CYS 118 1_555 disulf 2.030 A CYS 29 A SG CYS 28 1_555 A CYS 45 A SG CYS 44 1_555 disulf 2.026 A CYS 44 A SG CYS 43 1_555 A CYS 100 A SG CYS 99 1_555 disulf 2.028 A CYS 51 A SG CYS 50 1_555 A CYS 93 A SG CYS 92 1_555 disulf 2.024 A CYS 61 A SG CYS 60 1_555 A CYS 86 A SG CYS 85 1_555 disulf 2.027 A CYS 79 A SG CYS 78 1_555 A CYS 91 A SG CYS 90 1_555 HYDROLASE PHOSPHOLIPASE, ENZYME, PHOSPHOLIPIDS, HYDROLASE PA21B_NAJSG UNP 1 8 P60043 8 126 1MH7 1 120 P60043 A 1 1 119 2 2 anti-parallel anti-parallel A ASP 24 A ASP 23 A TYR 25 A TYR 24 A CYS 29 A CYS 28 A GLY 30 A GLY 29 A TYR 70 A TYR 69 A THR 73 A THR 72 A THR 76 A THR 75 A CYS 79 A CYS 78 76 P 41