0.028329
0.000000
0.003679
0.000000
0.020040
0.000000
0.000000
0.000000
0.019581
0.00000
0.00000
0.00000
Ryter, J.M.
Doe, C.Q.
Matthews, B.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
97.40
90.00
35.300
49.900
51.500
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
10
1541
1549
10.1016/S0969-2126(02)00883-3
12429095
Structure of the DNA Binding Region of Prospero Reveals a Novel Homeo-Prospero Domain
2002
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
103
1
CCD
2001-06-28
ADSC QUANTUM 4
double crystal
MAD
M
x-ray
1
0.9790
1.0
0.9793
1.0
0.9611
1.0
5.0.2
ALS
0.9790, 0.9793, 0.9611
SYNCHROTRON
ALS BEAMLINE 5.0.2
18454.402
Protein prospero
Homeo-prospero Domain (residues 1245-1396)
1
man
polymer
18.015
water
83
nat
water
no
yes
SSTLTP(MSE)HLRKAKL(MSE)FFWVRYPSSAVLK(MSE)YFPDIKFNKNNTAQLVKWFSNFREFYYIQ(MSE)EKYAR
QAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIEVPQNFRFVVESTLREFFRAIQGGKDTEQSWKKSIYKIISR
(MSE)DDPVPEYFKSP
SSTLTPMHLRKAKLMFFWVRYPSSAVLKMYFPDIKFNKNNTAQLVKWFSNFREFYYIQMEKYARQAVTEGIKTPDDLLIA
GDSELYRVLNLHYNRNNHIEVPQNFRFVVESTLREFFRAIQGGKDTEQSWKKSIYKIISRMDDPVPEYFKSP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
fruit fly
Drosophila
Escherichia
Escherichia coli
sample
PROS
7227
Drosophila melanogaster
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
PET28B
1
2.44
49.51
VAPOR DIFFUSION, HANGING DROP
8.5
PEG 4000, Tris, n-tetradecyl beta-D-maltoside, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 323K
323
repository
Initial release
Version format compliance
Version format compliance
1
0
2002-12-04
1
1
2008-04-28
1
2
2011-07-13
RCSB
Y
RCSB
2002-08-23
REL
REL
HOH
water
WAT
1
2
HOH
HOH
1
A
WAT
2
2
HOH
HOH
2
A
WAT
4
2
HOH
HOH
4
A
WAT
6
2
HOH
HOH
6
A
WAT
7
2
HOH
HOH
7
A
WAT
8
2
HOH
HOH
8
A
WAT
9
2
HOH
HOH
9
A
WAT
10
2
HOH
HOH
10
A
WAT
12
2
HOH
HOH
12
A
WAT
13
2
HOH
HOH
13
A
WAT
14
2
HOH
HOH
14
A
WAT
15
2
HOH
HOH
15
A
WAT
17
2
HOH
HOH
17
A
WAT
18
2
HOH
HOH
18
A
WAT
19
2
HOH
HOH
19
A
WAT
20
2
HOH
HOH
20
A
WAT
21
2
HOH
HOH
21
A
WAT
22
2
HOH
HOH
22
A
WAT
23
2
HOH
HOH
23
A
WAT
24
2
HOH
HOH
24
A
WAT
25
2
HOH
HOH
25
A
WAT
26
2
HOH
HOH
26
A
WAT
27
2
HOH
HOH
27
A
WAT
29
2
HOH
HOH
29
A
WAT
30
2
HOH
HOH
30
A
WAT
31
2
HOH
HOH
31
A
WAT
32
2
HOH
HOH
32
A
WAT
33
2
HOH
HOH
33
A
WAT
34
2
HOH
HOH
34
A
WAT
36
2
HOH
HOH
36
A
WAT
37
2
HOH
HOH
37
A
WAT
39
2
HOH
HOH
39
A
WAT
41
2
HOH
HOH
41
A
WAT
42
2
HOH
HOH
42
A
WAT
43
2
HOH
HOH
43
A
WAT
44
2
HOH
HOH
44
A
WAT
46
2
HOH
HOH
46
A
WAT
47
2
HOH
HOH
47
A
WAT
48
2
HOH
HOH
48
A
WAT
49
2
HOH
HOH
49
A
WAT
50
2
HOH
HOH
50
A
WAT
51
2
HOH
HOH
51
A
WAT
52
2
HOH
HOH
52
A
WAT
53
2
HOH
HOH
53
A
WAT
54
2
HOH
HOH
54
A
WAT
55
2
HOH
HOH
55
A
WAT
56
2
HOH
HOH
56
A
WAT
57
2
HOH
HOH
57
A
WAT
58
2
HOH
HOH
58
A
WAT
59
2
HOH
HOH
59
A
WAT
62
2
HOH
HOH
62
A
WAT
63
2
HOH
HOH
63
A
WAT
64
2
HOH
HOH
64
A
WAT
65
2
HOH
HOH
65
A
WAT
70
2
HOH
HOH
70
A
WAT
72
2
HOH
HOH
72
A
WAT
73
2
HOH
HOH
73
A
WAT
75
2
HOH
HOH
75
A
WAT
76
2
HOH
HOH
76
A
WAT
77
2
HOH
HOH
77
A
WAT
78
2
HOH
HOH
78
A
WAT
79
2
HOH
HOH
79
A
WAT
82
2
HOH
HOH
82
A
WAT
83
2
HOH
HOH
83
A
WAT
85
2
HOH
HOH
85
A
WAT
86
2
HOH
HOH
86
A
WAT
87
2
HOH
HOH
87
A
WAT
88
2
HOH
HOH
88
A
WAT
90
2
HOH
HOH
90
A
WAT
91
2
HOH
HOH
91
A
WAT
92
2
HOH
HOH
92
A
WAT
93
2
HOH
HOH
93
A
WAT
95
2
HOH
HOH
95
A
WAT
96
2
HOH
HOH
96
A
WAT
98
2
HOH
HOH
98
A
WAT
99
2
HOH
HOH
99
A
WAT
100
2
HOH
HOH
100
A
WAT
101
2
HOH
HOH
101
A
WAT
103
2
HOH
HOH
103
A
WAT
104
2
HOH
HOH
104
A
WAT
105
2
HOH
HOH
105
A
WAT
107
2
HOH
HOH
107
A
WAT
109
2
HOH
HOH
109
A
SER
1245
n
1
SER
1245
A
SER
1246
n
2
SER
1246
A
THR
1247
n
3
THR
1247
A
LEU
1248
n
4
LEU
1248
A
THR
1249
n
5
THR
1249
A
PRO
1250
n
6
PRO
1250
A
MSE
1251
n
7
MSE
1251
A
HIS
1252
n
8
HIS
1252
A
LEU
1253
n
9
LEU
1253
A
ARG
1254
n
10
ARG
1254
A
LYS
1255
n
11
LYS
1255
A
ALA
1256
n
12
ALA
1256
A
LYS
1257
n
13
LYS
1257
A
LEU
1258
n
14
LEU
1258
A
MSE
1259
n
15
MSE
1259
A
PHE
1260
n
16
PHE
1260
A
PHE
1261
n
17
PHE
1261
A
TRP
1262
n
18
TRP
1262
A
VAL
1263
n
19
VAL
1263
A
ARG
1264
n
20
ARG
1264
A
TYR
1265
n
21
TYR
1265
A
PRO
1266
n
22
PRO
1266
A
SER
1267
n
23
SER
1267
A
SER
1268
n
24
SER
1268
A
ALA
1269
n
25
ALA
1269
A
VAL
1270
n
26
VAL
1270
A
LEU
1271
n
27
LEU
1271
A
LYS
1272
n
28
LYS
1272
A
MSE
1273
n
29
MSE
1273
A
TYR
1274
n
30
TYR
1274
A
PHE
1275
n
31
PHE
1275
A
PRO
1276
n
32
PRO
1276
A
ASP
1277
n
33
ASP
1277
A
ILE
1278
n
34
ILE
1278
A
LYS
1279
n
35
LYS
1279
A
PHE
1280
n
36
PHE
1280
A
ASN
1281
n
37
ASN
1281
A
LYS
1282
n
38
LYS
1282
A
ASN
1283
n
39
ASN
1283
A
ASN
1284
n
40
ASN
1284
A
THR
1285
n
41
THR
1285
A
ALA
1286
n
42
ALA
1286
A
GLN
1287
n
43
GLN
1287
A
LEU
1288
n
44
LEU
1288
A
VAL
1289
n
45
VAL
1289
A
LYS
1290
n
46
LYS
1290
A
TRP
1291
n
47
TRP
1291
A
PHE
1292
n
48
PHE
1292
A
SER
1293
n
49
SER
1293
A
ASN
1294
n
50
ASN
1294
A
PHE
1295
n
51
PHE
1295
A
ARG
1296
n
52
ARG
1296
A
GLU
1297
n
53
GLU
1297
A
PHE
1298
n
54
PHE
1298
A
TYR
1299
n
55
TYR
1299
A
TYR
1300
n
56
TYR
1300
A
ILE
1301
n
57
ILE
1301
A
GLN
1302
n
58
GLN
1302
A
MSE
1303
n
59
MSE
1303
A
GLU
1304
n
60
GLU
1304
A
LYS
1305
n
61
LYS
1305
A
TYR
1306
n
62
TYR
1306
A
ALA
1307
n
63
ALA
1307
A
ARG
1308
n
64
ARG
1308
A
GLN
1309
n
65
GLN
1309
A
ALA
1310
n
66
ALA
1310
A
VAL
1311
n
67
VAL
1311
A
THR
1312
n
68
THR
1312
A
GLU
1313
n
69
GLU
1313
A
n
70
1314
A
n
71
1315
A
n
72
1316
A
n
73
1317
A
n
74
1318
A
n
75
1319
A
n
76
1320
A
n
77
1321
A
n
78
1322
A
n
79
1323
A
n
80
1324
A
n
81
1325
A
n
82
1326
A
SER
1327
n
83
SER
1327
A
GLU
1328
n
84
GLU
1328
A
LEU
1329
n
85
LEU
1329
A
TYR
1330
n
86
TYR
1330
A
ARG
1331
n
87
ARG
1331
A
VAL
1332
n
88
VAL
1332
A
LEU
1333
n
89
LEU
1333
A
ASN
1334
n
90
ASN
1334
A
LEU
1335
n
91
LEU
1335
A
HIS
1336
n
92
HIS
1336
A
TYR
1337
n
93
TYR
1337
A
ASN
1338
n
94
ASN
1338
A
ARG
1339
n
95
ARG
1339
A
ASN
1340
n
96
ASN
1340
A
ASN
1341
n
97
ASN
1341
A
HIS
1342
n
98
HIS
1342
A
ILE
1343
n
99
ILE
1343
A
GLU
1344
n
100
GLU
1344
A
VAL
1345
n
101
VAL
1345
A
PRO
1346
n
102
PRO
1346
A
GLN
1347
n
103
GLN
1347
A
ASN
1348
n
104
ASN
1348
A
PHE
1349
n
105
PHE
1349
A
ARG
1350
n
106
ARG
1350
A
PHE
1351
n
107
PHE
1351
A
VAL
1352
n
108
VAL
1352
A
VAL
1353
n
109
VAL
1353
A
GLU
1354
n
110
GLU
1354
A
SER
1355
n
111
SER
1355
A
THR
1356
n
112
THR
1356
A
LEU
1357
n
113
LEU
1357
A
ARG
1358
n
114
ARG
1358
A
GLU
1359
n
115
GLU
1359
A
PHE
1360
n
116
PHE
1360
A
PHE
1361
n
117
PHE
1361
A
ARG
1362
n
118
ARG
1362
A
ALA
1363
n
119
ALA
1363
A
ILE
1364
n
120
ILE
1364
A
GLN
1365
n
121
GLN
1365
A
GLY
1366
n
122
GLY
1366
A
GLY
1367
n
123
GLY
1367
A
LYS
1368
n
124
LYS
1368
A
ASP
1369
n
125
ASP
1369
A
THR
1370
n
126
THR
1370
A
GLU
1371
n
127
GLU
1371
A
GLN
1372
n
128
GLN
1372
A
SER
1373
n
129
SER
1373
A
TRP
1374
n
130
TRP
1374
A
LYS
1375
n
131
LYS
1375
A
LYS
1376
n
132
LYS
1376
A
SER
1377
n
133
SER
1377
A
ILE
1378
n
134
ILE
1378
A
TYR
1379
n
135
TYR
1379
A
LYS
1380
n
136
LYS
1380
A
ILE
1381
n
137
ILE
1381
A
ILE
1382
n
138
ILE
1382
A
SER
1383
n
139
SER
1383
A
ARG
1384
n
140
ARG
1384
A
MSE
1385
n
141
MSE
1385
A
ASP
1386
n
142
ASP
1386
A
ASP
1387
n
143
ASP
1387
A
PRO
1388
n
144
PRO
1388
A
VAL
1389
n
145
VAL
1389
A
PRO
1390
n
146
PRO
1390
A
GLU
1391
n
147
GLU
1391
A
TYR
1392
n
148
TYR
1392
A
PHE
1393
n
149
PHE
1393
A
LYS
1394
n
150
LYS
1394
A
SER
1395
n
151
SER
1395
A
PRO
1396
n
152
PRO
1396
A
author_defined_assembly
1
monomeric
A
MSE
1251
SELENOMETHIONINE
A
MSE
7
MET
A
MSE
1259
SELENOMETHIONINE
A
MSE
15
MET
A
MSE
1273
SELENOMETHIONINE
A
MSE
29
MET
A
MSE
1303
SELENOMETHIONINE
A
MSE
59
MET
A
MSE
1385
SELENOMETHIONINE
A
MSE
141
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
GLY
1314
A
GLY
70
1
Y
1
A
ILE
1315
A
ILE
71
1
Y
1
A
LYS
1316
A
LYS
72
1
Y
1
A
THR
1317
A
THR
73
1
Y
1
A
PRO
1318
A
PRO
74
1
Y
1
A
ASP
1319
A
ASP
75
1
Y
1
A
ASP
1320
A
ASP
76
1
Y
1
A
LEU
1321
A
LEU
77
1
Y
1
A
LEU
1322
A
LEU
78
1
Y
1
A
ILE
1323
A
ILE
79
1
Y
1
A
ALA
1324
A
ALA
80
1
Y
1
A
GLY
1325
A
GLY
81
1
Y
1
A
ASP
1326
A
ASP
82
1
Y
1
A
ASN
1338
-143.62
53.42
1
A
ASN
1338
-143.62
52.96
protein_rep.param
protein.top
dna-rna_rep.param
dna-rna.top
water_rep.param
water.top
ion.param
ion.top
0.256
0.216
2.05
500
1081
11045
11045
98.0
RANDOM
1
0.0
MAD
Engh & Huber
2.05
500
83
1434
0
0
1351
0.005949
0.99462
1.363
1.5
2.261
2.0
2.185
2.0
3.299
2.5
2.05
500.0
1MIJ
11045
11045
0.0
0.0
1
98.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
SHARP
refinement
CNS
1.0
Protein prospero
Crystal Structure of the Homeo-prospero Domain of D. melanogaster Prospero
1
N
N
2
N
N
A
THR
1249
A
THR
5
HELX_P
A
PHE
1260
A
PHE
16
1
1
12
A
SER
1267
A
SER
23
HELX_P
A
PHE
1275
A
PHE
31
1
2
9
A
ASN
1281
A
ASN
37
HELX_P
A
GLU
1313
A
GLU
69
1
3
33
A
SER
1327
A
SER
83
HELX_P
A
ASN
1338
A
ASN
94
1
4
12
A
PRO
1346
A
PRO
102
HELX_P
A
GLY
1366
A
GLY
122
1
5
21
A
GLY
1367
A
GLY
123
HELX_P
A
GLU
1371
A
GLU
127
5
6
5
A
LYS
1375
A
LYS
131
HELX_P
A
ARG
1384
A
ARG
140
1
7
10
A
PRO
1390
A
PRO
146
HELX_P
A
SER
1395
A
SER
151
5
8
6
covale
1.330
A
A
PRO
1250
A
C
PRO
6
1_555
A
MSE
1251
A
N
MSE
7
1_555
covale
1.327
B
A
PRO
1250
A
C
PRO
6
1_555
A
MSE
1251
A
N
MSE
7
1_555
covale
1.332
A
A
MSE
1251
A
C
MSE
7
1_555
A
HIS
1252
A
N
HIS
8
1_555
covale
1.331
B
A
MSE
1251
A
C
MSE
7
1_555
A
HIS
1252
A
N
HIS
8
1_555
covale
1.329
A
A
LEU
1258
A
C
LEU
14
1_555
A
MSE
1259
A
N
MSE
15
1_555
covale
1.331
B
A
LEU
1258
A
C
LEU
14
1_555
A
MSE
1259
A
N
MSE
15
1_555
covale
1.327
A
A
MSE
1259
A
C
MSE
15
1_555
A
PHE
1260
A
N
PHE
16
1_555
covale
1.329
B
A
MSE
1259
A
C
MSE
15
1_555
A
PHE
1260
A
N
PHE
16
1_555
covale
1.330
B
A
LYS
1272
A
C
LYS
28
1_555
A
MSE
1273
A
N
MSE
29
1_555
covale
1.329
A
A
LYS
1272
A
C
LYS
28
1_555
A
MSE
1273
A
N
MSE
29
1_555
covale
1.330
B
A
MSE
1273
A
C
MSE
29
1_555
A
TYR
1274
A
N
TYR
30
1_555
covale
1.330
A
A
MSE
1273
A
C
MSE
29
1_555
A
TYR
1274
A
N
TYR
30
1_555
covale
1.333
A
GLN
1302
A
C
GLN
58
1_555
A
MSE
1303
A
N
MSE
59
1_555
covale
1.333
A
MSE
1303
A
C
MSE
59
1_555
A
GLU
1304
A
N
GLU
60
1_555
covale
1.330
B
A
ARG
1384
A
C
ARG
140
1_555
A
MSE
1385
A
N
MSE
141
1_555
covale
1.329
A
A
ARG
1384
A
C
ARG
140
1_555
A
MSE
1385
A
N
MSE
141
1_555
covale
1.323
A
MSE
1385
A
C
MSE
141
1_555
A
ASP
1386
A
N
ASP
142
1_555
TRANSCRIPTION
homeodomain, DNA-binding domain, prospero domain, 4-helix bundle, TRANSCRIPTION
PROS_DROME
UNP
1
1245
P29617
SSTLTPMHLRKAKLMFFWVRYPSSAVLKMYFPDIKFNKNNTAQLVKWFSNFREFYYIQMEKYARQAVTEGIKTPDDLLIA
GDSELYRVLNLHYNRNNHIEVPQNFRFVVESTLREFFRAIQGGKDTEQSWKKSIYKIISRMDDPVPEYFKSP
1245
1396
1MIJ
1245
1396
P29617
A
1
1
152
1
MET
MODIFIED RESIDUE
MSE
1251
1MIJ
A
P29617
UNP
1251
7
1
MET
MODIFIED RESIDUE
MSE
1259
1MIJ
A
P29617
UNP
1259
15
1
MET
MODIFIED RESIDUE
MSE
1273
1MIJ
A
P29617
UNP
1273
29
1
MET
MODIFIED RESIDUE
MSE
1303
1MIJ
A
P29617
UNP
1303
59
1
MET
MODIFIED RESIDUE
MSE
1385
1MIJ
A
P29617
UNP
1385
141
4
P 1 21 1