0.028329 0.000000 0.003679 0.000000 0.020040 0.000000 0.000000 0.000000 0.019581 0.00000 0.00000 0.00000 Ryter, J.M. Doe, C.Q. Matthews, B.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 97.40 90.00 35.300 49.900 51.500 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 10 1541 1549 10.1016/S0969-2126(02)00883-3 12429095 Structure of the DNA Binding Region of Prospero Reveals a Novel Homeo-Prospero Domain 2002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 103 1 CCD 2001-06-28 ADSC QUANTUM 4 double crystal MAD M x-ray 1 0.9790 1.0 0.9793 1.0 0.9611 1.0 5.0.2 ALS 0.9790, 0.9793, 0.9611 SYNCHROTRON ALS BEAMLINE 5.0.2 18454.402 Protein prospero Homeo-prospero Domain (residues 1245-1396) 1 man polymer 18.015 water 83 nat water no yes SSTLTP(MSE)HLRKAKL(MSE)FFWVRYPSSAVLK(MSE)YFPDIKFNKNNTAQLVKWFSNFREFYYIQ(MSE)EKYAR QAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIEVPQNFRFVVESTLREFFRAIQGGKDTEQSWKKSIYKIISR (MSE)DDPVPEYFKSP SSTLTPMHLRKAKLMFFWVRYPSSAVLKMYFPDIKFNKNNTAQLVKWFSNFREFYYIQMEKYARQAVTEGIKTPDDLLIA GDSELYRVLNLHYNRNNHIEVPQNFRFVVESTLREFFRAIQGGKDTEQSWKKSIYKIISRMDDPVPEYFKSP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n fruit fly Drosophila Escherichia Escherichia coli sample PROS 7227 Drosophila melanogaster 469008 Escherichia coli BL21(DE3) BL21(DE3) PLASMID PET28B 1 2.44 49.51 VAPOR DIFFUSION, HANGING DROP 8.5 PEG 4000, Tris, n-tetradecyl beta-D-maltoside, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 323K 323 repository Initial release Version format compliance Version format compliance 1 0 2002-12-04 1 1 2008-04-28 1 2 2011-07-13 RCSB Y RCSB 2002-08-23 REL REL HOH water WAT 1 2 HOH HOH 1 A WAT 2 2 HOH HOH 2 A WAT 4 2 HOH HOH 4 A WAT 6 2 HOH HOH 6 A WAT 7 2 HOH HOH 7 A WAT 8 2 HOH HOH 8 A WAT 9 2 HOH HOH 9 A WAT 10 2 HOH HOH 10 A WAT 12 2 HOH HOH 12 A WAT 13 2 HOH HOH 13 A WAT 14 2 HOH HOH 14 A WAT 15 2 HOH HOH 15 A WAT 17 2 HOH HOH 17 A WAT 18 2 HOH HOH 18 A WAT 19 2 HOH HOH 19 A WAT 20 2 HOH HOH 20 A WAT 21 2 HOH HOH 21 A WAT 22 2 HOH HOH 22 A WAT 23 2 HOH HOH 23 A WAT 24 2 HOH HOH 24 A WAT 25 2 HOH HOH 25 A WAT 26 2 HOH HOH 26 A WAT 27 2 HOH HOH 27 A WAT 29 2 HOH HOH 29 A WAT 30 2 HOH HOH 30 A WAT 31 2 HOH HOH 31 A WAT 32 2 HOH HOH 32 A WAT 33 2 HOH HOH 33 A WAT 34 2 HOH HOH 34 A WAT 36 2 HOH HOH 36 A WAT 37 2 HOH HOH 37 A WAT 39 2 HOH HOH 39 A WAT 41 2 HOH HOH 41 A WAT 42 2 HOH HOH 42 A WAT 43 2 HOH HOH 43 A WAT 44 2 HOH HOH 44 A WAT 46 2 HOH HOH 46 A WAT 47 2 HOH HOH 47 A WAT 48 2 HOH HOH 48 A WAT 49 2 HOH HOH 49 A WAT 50 2 HOH HOH 50 A WAT 51 2 HOH HOH 51 A WAT 52 2 HOH HOH 52 A WAT 53 2 HOH HOH 53 A WAT 54 2 HOH HOH 54 A WAT 55 2 HOH HOH 55 A WAT 56 2 HOH HOH 56 A WAT 57 2 HOH HOH 57 A WAT 58 2 HOH HOH 58 A WAT 59 2 HOH HOH 59 A WAT 62 2 HOH HOH 62 A WAT 63 2 HOH HOH 63 A WAT 64 2 HOH HOH 64 A WAT 65 2 HOH HOH 65 A WAT 70 2 HOH HOH 70 A WAT 72 2 HOH HOH 72 A WAT 73 2 HOH HOH 73 A WAT 75 2 HOH HOH 75 A WAT 76 2 HOH HOH 76 A WAT 77 2 HOH HOH 77 A WAT 78 2 HOH HOH 78 A WAT 79 2 HOH HOH 79 A WAT 82 2 HOH HOH 82 A WAT 83 2 HOH HOH 83 A WAT 85 2 HOH HOH 85 A WAT 86 2 HOH HOH 86 A WAT 87 2 HOH HOH 87 A WAT 88 2 HOH HOH 88 A WAT 90 2 HOH HOH 90 A WAT 91 2 HOH HOH 91 A WAT 92 2 HOH HOH 92 A WAT 93 2 HOH HOH 93 A WAT 95 2 HOH HOH 95 A WAT 96 2 HOH HOH 96 A WAT 98 2 HOH HOH 98 A WAT 99 2 HOH HOH 99 A WAT 100 2 HOH HOH 100 A WAT 101 2 HOH HOH 101 A WAT 103 2 HOH HOH 103 A WAT 104 2 HOH HOH 104 A WAT 105 2 HOH HOH 105 A WAT 107 2 HOH HOH 107 A WAT 109 2 HOH HOH 109 A SER 1245 n 1 SER 1245 A SER 1246 n 2 SER 1246 A THR 1247 n 3 THR 1247 A LEU 1248 n 4 LEU 1248 A THR 1249 n 5 THR 1249 A PRO 1250 n 6 PRO 1250 A MSE 1251 n 7 MSE 1251 A HIS 1252 n 8 HIS 1252 A LEU 1253 n 9 LEU 1253 A ARG 1254 n 10 ARG 1254 A LYS 1255 n 11 LYS 1255 A ALA 1256 n 12 ALA 1256 A LYS 1257 n 13 LYS 1257 A LEU 1258 n 14 LEU 1258 A MSE 1259 n 15 MSE 1259 A PHE 1260 n 16 PHE 1260 A PHE 1261 n 17 PHE 1261 A TRP 1262 n 18 TRP 1262 A VAL 1263 n 19 VAL 1263 A ARG 1264 n 20 ARG 1264 A TYR 1265 n 21 TYR 1265 A PRO 1266 n 22 PRO 1266 A SER 1267 n 23 SER 1267 A SER 1268 n 24 SER 1268 A ALA 1269 n 25 ALA 1269 A VAL 1270 n 26 VAL 1270 A LEU 1271 n 27 LEU 1271 A LYS 1272 n 28 LYS 1272 A MSE 1273 n 29 MSE 1273 A TYR 1274 n 30 TYR 1274 A PHE 1275 n 31 PHE 1275 A PRO 1276 n 32 PRO 1276 A ASP 1277 n 33 ASP 1277 A ILE 1278 n 34 ILE 1278 A LYS 1279 n 35 LYS 1279 A PHE 1280 n 36 PHE 1280 A ASN 1281 n 37 ASN 1281 A LYS 1282 n 38 LYS 1282 A ASN 1283 n 39 ASN 1283 A ASN 1284 n 40 ASN 1284 A THR 1285 n 41 THR 1285 A ALA 1286 n 42 ALA 1286 A GLN 1287 n 43 GLN 1287 A LEU 1288 n 44 LEU 1288 A VAL 1289 n 45 VAL 1289 A LYS 1290 n 46 LYS 1290 A TRP 1291 n 47 TRP 1291 A PHE 1292 n 48 PHE 1292 A SER 1293 n 49 SER 1293 A ASN 1294 n 50 ASN 1294 A PHE 1295 n 51 PHE 1295 A ARG 1296 n 52 ARG 1296 A GLU 1297 n 53 GLU 1297 A PHE 1298 n 54 PHE 1298 A TYR 1299 n 55 TYR 1299 A TYR 1300 n 56 TYR 1300 A ILE 1301 n 57 ILE 1301 A GLN 1302 n 58 GLN 1302 A MSE 1303 n 59 MSE 1303 A GLU 1304 n 60 GLU 1304 A LYS 1305 n 61 LYS 1305 A TYR 1306 n 62 TYR 1306 A ALA 1307 n 63 ALA 1307 A ARG 1308 n 64 ARG 1308 A GLN 1309 n 65 GLN 1309 A ALA 1310 n 66 ALA 1310 A VAL 1311 n 67 VAL 1311 A THR 1312 n 68 THR 1312 A GLU 1313 n 69 GLU 1313 A n 70 1314 A n 71 1315 A n 72 1316 A n 73 1317 A n 74 1318 A n 75 1319 A n 76 1320 A n 77 1321 A n 78 1322 A n 79 1323 A n 80 1324 A n 81 1325 A n 82 1326 A SER 1327 n 83 SER 1327 A GLU 1328 n 84 GLU 1328 A LEU 1329 n 85 LEU 1329 A TYR 1330 n 86 TYR 1330 A ARG 1331 n 87 ARG 1331 A VAL 1332 n 88 VAL 1332 A LEU 1333 n 89 LEU 1333 A ASN 1334 n 90 ASN 1334 A LEU 1335 n 91 LEU 1335 A HIS 1336 n 92 HIS 1336 A TYR 1337 n 93 TYR 1337 A ASN 1338 n 94 ASN 1338 A ARG 1339 n 95 ARG 1339 A ASN 1340 n 96 ASN 1340 A ASN 1341 n 97 ASN 1341 A HIS 1342 n 98 HIS 1342 A ILE 1343 n 99 ILE 1343 A GLU 1344 n 100 GLU 1344 A VAL 1345 n 101 VAL 1345 A PRO 1346 n 102 PRO 1346 A GLN 1347 n 103 GLN 1347 A ASN 1348 n 104 ASN 1348 A PHE 1349 n 105 PHE 1349 A ARG 1350 n 106 ARG 1350 A PHE 1351 n 107 PHE 1351 A VAL 1352 n 108 VAL 1352 A VAL 1353 n 109 VAL 1353 A GLU 1354 n 110 GLU 1354 A SER 1355 n 111 SER 1355 A THR 1356 n 112 THR 1356 A LEU 1357 n 113 LEU 1357 A ARG 1358 n 114 ARG 1358 A GLU 1359 n 115 GLU 1359 A PHE 1360 n 116 PHE 1360 A PHE 1361 n 117 PHE 1361 A ARG 1362 n 118 ARG 1362 A ALA 1363 n 119 ALA 1363 A ILE 1364 n 120 ILE 1364 A GLN 1365 n 121 GLN 1365 A GLY 1366 n 122 GLY 1366 A GLY 1367 n 123 GLY 1367 A LYS 1368 n 124 LYS 1368 A ASP 1369 n 125 ASP 1369 A THR 1370 n 126 THR 1370 A GLU 1371 n 127 GLU 1371 A GLN 1372 n 128 GLN 1372 A SER 1373 n 129 SER 1373 A TRP 1374 n 130 TRP 1374 A LYS 1375 n 131 LYS 1375 A LYS 1376 n 132 LYS 1376 A SER 1377 n 133 SER 1377 A ILE 1378 n 134 ILE 1378 A TYR 1379 n 135 TYR 1379 A LYS 1380 n 136 LYS 1380 A ILE 1381 n 137 ILE 1381 A ILE 1382 n 138 ILE 1382 A SER 1383 n 139 SER 1383 A ARG 1384 n 140 ARG 1384 A MSE 1385 n 141 MSE 1385 A ASP 1386 n 142 ASP 1386 A ASP 1387 n 143 ASP 1387 A PRO 1388 n 144 PRO 1388 A VAL 1389 n 145 VAL 1389 A PRO 1390 n 146 PRO 1390 A GLU 1391 n 147 GLU 1391 A TYR 1392 n 148 TYR 1392 A PHE 1393 n 149 PHE 1393 A LYS 1394 n 150 LYS 1394 A SER 1395 n 151 SER 1395 A PRO 1396 n 152 PRO 1396 A author_defined_assembly 1 monomeric A MSE 1251 SELENOMETHIONINE A MSE 7 MET A MSE 1259 SELENOMETHIONINE A MSE 15 MET A MSE 1273 SELENOMETHIONINE A MSE 29 MET A MSE 1303 SELENOMETHIONINE A MSE 59 MET A MSE 1385 SELENOMETHIONINE A MSE 141 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A GLY 1314 A GLY 70 1 Y 1 A ILE 1315 A ILE 71 1 Y 1 A LYS 1316 A LYS 72 1 Y 1 A THR 1317 A THR 73 1 Y 1 A PRO 1318 A PRO 74 1 Y 1 A ASP 1319 A ASP 75 1 Y 1 A ASP 1320 A ASP 76 1 Y 1 A LEU 1321 A LEU 77 1 Y 1 A LEU 1322 A LEU 78 1 Y 1 A ILE 1323 A ILE 79 1 Y 1 A ALA 1324 A ALA 80 1 Y 1 A GLY 1325 A GLY 81 1 Y 1 A ASP 1326 A ASP 82 1 Y 1 A ASN 1338 -143.62 53.42 1 A ASN 1338 -143.62 52.96 protein_rep.param protein.top dna-rna_rep.param dna-rna.top water_rep.param water.top ion.param ion.top 0.256 0.216 2.05 500 1081 11045 11045 98.0 RANDOM 1 0.0 MAD Engh & Huber 2.05 500 83 1434 0 0 1351 0.005949 0.99462 1.363 1.5 2.261 2.0 2.185 2.0 3.299 2.5 2.05 500.0 1MIJ 11045 11045 0.0 0.0 1 98.0 data reduction DENZO data scaling SCALEPACK phasing SHARP refinement CNS 1.0 Protein prospero Crystal Structure of the Homeo-prospero Domain of D. melanogaster Prospero 1 N N 2 N N A THR 1249 A THR 5 HELX_P A PHE 1260 A PHE 16 1 1 12 A SER 1267 A SER 23 HELX_P A PHE 1275 A PHE 31 1 2 9 A ASN 1281 A ASN 37 HELX_P A GLU 1313 A GLU 69 1 3 33 A SER 1327 A SER 83 HELX_P A ASN 1338 A ASN 94 1 4 12 A PRO 1346 A PRO 102 HELX_P A GLY 1366 A GLY 122 1 5 21 A GLY 1367 A GLY 123 HELX_P A GLU 1371 A GLU 127 5 6 5 A LYS 1375 A LYS 131 HELX_P A ARG 1384 A ARG 140 1 7 10 A PRO 1390 A PRO 146 HELX_P A SER 1395 A SER 151 5 8 6 covale 1.330 A A PRO 1250 A C PRO 6 1_555 A MSE 1251 A N MSE 7 1_555 covale 1.327 B A PRO 1250 A C PRO 6 1_555 A MSE 1251 A N MSE 7 1_555 covale 1.332 A A MSE 1251 A C MSE 7 1_555 A HIS 1252 A N HIS 8 1_555 covale 1.331 B A MSE 1251 A C MSE 7 1_555 A HIS 1252 A N HIS 8 1_555 covale 1.329 A A LEU 1258 A C LEU 14 1_555 A MSE 1259 A N MSE 15 1_555 covale 1.331 B A LEU 1258 A C LEU 14 1_555 A MSE 1259 A N MSE 15 1_555 covale 1.327 A A MSE 1259 A C MSE 15 1_555 A PHE 1260 A N PHE 16 1_555 covale 1.329 B A MSE 1259 A C MSE 15 1_555 A PHE 1260 A N PHE 16 1_555 covale 1.330 B A LYS 1272 A C LYS 28 1_555 A MSE 1273 A N MSE 29 1_555 covale 1.329 A A LYS 1272 A C LYS 28 1_555 A MSE 1273 A N MSE 29 1_555 covale 1.330 B A MSE 1273 A C MSE 29 1_555 A TYR 1274 A N TYR 30 1_555 covale 1.330 A A MSE 1273 A C MSE 29 1_555 A TYR 1274 A N TYR 30 1_555 covale 1.333 A GLN 1302 A C GLN 58 1_555 A MSE 1303 A N MSE 59 1_555 covale 1.333 A MSE 1303 A C MSE 59 1_555 A GLU 1304 A N GLU 60 1_555 covale 1.330 B A ARG 1384 A C ARG 140 1_555 A MSE 1385 A N MSE 141 1_555 covale 1.329 A A ARG 1384 A C ARG 140 1_555 A MSE 1385 A N MSE 141 1_555 covale 1.323 A MSE 1385 A C MSE 141 1_555 A ASP 1386 A N ASP 142 1_555 TRANSCRIPTION homeodomain, DNA-binding domain, prospero domain, 4-helix bundle, TRANSCRIPTION PROS_DROME UNP 1 1245 P29617 SSTLTPMHLRKAKLMFFWVRYPSSAVLKMYFPDIKFNKNNTAQLVKWFSNFREFYYIQMEKYARQAVTEGIKTPDDLLIA GDSELYRVLNLHYNRNNHIEVPQNFRFVVESTLREFFRAIQGGKDTEQSWKKSIYKIISRMDDPVPEYFKSP 1245 1396 1MIJ 1245 1396 P29617 A 1 1 152 1 MET MODIFIED RESIDUE MSE 1251 1MIJ A P29617 UNP 1251 7 1 MET MODIFIED RESIDUE MSE 1259 1MIJ A P29617 UNP 1259 15 1 MET MODIFIED RESIDUE MSE 1273 1MIJ A P29617 UNP 1273 29 1 MET MODIFIED RESIDUE MSE 1303 1MIJ A P29617 UNP 1303 59 1 MET MODIFIED RESIDUE MSE 1385 1MIJ A P29617 UNP 1385 141 4 P 1 21 1