0.010040 0.005797 0.000000 0.000000 0.011593 0.000000 0.000000 0.000000 0.007072 0.00000 0.00000 0.00000 Cygler, M. Sivaraman, J. Grochulski, P. Coulombe, R. Storer, A.C. Mort, J.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 99.600 99.600 141.400 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 4 405 416 10.1016/S0969-2126(96)00046-9 8740363 Structure of rat procathepsin B: model for inhibition of cysteine protease activity by the proregion. 1996 To be Published 0353 Crystallization of Rat Procathepsin B 10.2210/pdb1mir/pdb pdb_00001mir 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 IMAGE PLATE 1995-07-07 RIGAKU M x-ray 1 1.5418 1.0 1.5418 35633.625 PROCATHEPSIN B 3.4.22.1 C29S, S115A 2 man polymer 18.015 water 33 nat water no no HDKPSFHPLSDDMINYINKQNTTWQAGRNFYNVDISYLKKLCGTVLGGPKLPERVGFSEDINLPESFDAREQWSNCPTIA QIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHI GCLPYTIPPCEHHVNGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS DFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIESEIVAGIPRTQQYWG RF HDKPSFHPLSDDMINYINKQNTTWQAGRNFYNVDISYLKKLCGTVLGGPKLPERVGFSEDINLPESFDAREQWSNCPTIA QIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHI GCLPYTIPPCEHHVNGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS DFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIESEIVAGIPRTQQYWG RF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Norway rat Rattus Pichia sample 10116 Rattus norvegicus NATURALLY OCCURRING VARIANT V223A 4922 Pichia pastoris 2.84 56. pdbx_database_status pdbx_struct_assembly pdbx_struct_assembly_gen pdbx_unobs_or_zero_occ_atoms struct_ref_seq_dif database_2 pdbx_unobs_or_zero_occ_atoms struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Advisory Database references Derived calculations Other Advisory Database references 1 0 1997-01-11 1 1 2008-03-24 1 2 2011-07-13 1 3 2020-02-12 1 4 2021-11-03 _pdbx_database_status.process_site _struct_ref_seq_dif.details _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details Y BNL 1996-01-12 REL REL HOH water HOH 404 2 HOH HOH 404 A HOH 406 2 HOH HOH 406 A HOH 407 2 HOH HOH 407 A HOH 409 2 HOH HOH 409 A HOH 414 2 HOH HOH 414 A HOH 417 2 HOH HOH 417 A HOH 422 2 HOH HOH 422 A HOH 426 2 HOH HOH 426 A HOH 428 2 HOH HOH 428 A HOH 429 2 HOH HOH 429 A HOH 433 2 HOH HOH 433 A HOH 401 2 HOH HOH 401 B HOH 402 2 HOH HOH 402 B HOH 403 2 HOH HOH 403 B HOH 405 2 HOH HOH 405 B HOH 408 2 HOH HOH 408 B HOH 410 2 HOH HOH 410 B HOH 411 2 HOH HOH 411 B HOH 412 2 HOH HOH 412 B HOH 413 2 HOH HOH 413 B HOH 415 2 HOH HOH 415 B HOH 416 2 HOH HOH 416 B HOH 418 2 HOH HOH 418 B HOH 419 2 HOH HOH 419 B HOH 420 2 HOH HOH 420 B HOH 421 2 HOH HOH 421 B HOH 423 2 HOH HOH 423 B HOH 424 2 HOH HOH 424 B HOH 425 2 HOH HOH 425 B HOH 427 2 HOH HOH 427 B HOH 430 2 HOH HOH 430 B HOH 431 2 HOH HOH 431 B HOH 432 2 HOH HOH 432 B n 1 P 1 A n 2 P 2 A n 3 P 3 A n 4 P 4 A n 5 P 5 A n 6 P 6 A n 7 P 7 A n 8 P 8 A n 9 P 9 A SER 10 n 10 P SER 10 A ASP 11 n 11 P ASP 11 A ASP 12 n 12 P ASP 12 A MET 13 n 13 P MET 13 A ILE 14 n 14 P ILE 14 A ASN 15 n 15 P ASN 15 A TYR 16 n 16 P TYR 16 A ILE 17 n 17 P ILE 17 A ASN 18 n 18 P ASN 18 A LYS 19 n 19 P LYS 19 A GLN 20 n 20 P GLN 20 A ASN 21 n 21 P ASN 21 A THR 22 n 22 P THR 22 A THR 23 n 23 P THR 23 A TRP 24 n 24 P TRP 24 A GLN 25 n 25 P GLN 25 A ALA 26 n 26 P ALA 26 A GLY 27 n 27 P GLY 27 A ARG 28 n 28 P ARG 28 A ASN 29 n 29 P ASN 29 A PHE 30 n 30 P PHE 30 A TYR 31 n 31 P TYR 31 A ASN 32 n 32 P ASN 32 A VAL 33 n 33 P VAL 33 A ASP 34 n 34 P ASP 34 A ILE 35 n 35 P ILE 35 A SER 36 n 36 P SER 36 A TYR 37 n 37 P TYR 37 A LEU 38 n 38 P LEU 38 A LYS 39 n 39 P LYS 39 A LYS 40 n 40 P LYS 40 A LEU 41 n 41 P LEU 41 A CYS 42 n 42 P CYS 42 A GLY 43 n 43 P GLY 43 A THR 44 n 44 P THR 44 A VAL 45 n 45 P VAL 45 A LEU 46 n 46 P LEU 46 A GLY 47 n 47 P GLY 47 A GLY 48 n 48 P GLY 48 A PRO 49 n 49 P PRO 49 A LYS 50 n 50 P LYS 50 A LEU 51 n 51 P LEU 51 A PRO 52 n 52 P PRO 52 A GLU 53 n 53 P GLU 53 A ARG 54 n 54 P ARG 54 A VAL 55 n 55 P VAL 55 A GLY 56 n 56 P GLY 56 A PHE 57 n 57 P PHE 57 A SER 58 n 58 P SER 58 A GLU 59 n 59 P GLU 59 A ASP 60 n 60 P ASP 60 A ILE 61 n 61 P ILE 61 A ASN 62 n 62 P ASN 62 A LEU 1 n 63 LEU 1 A PRO 2 n 64 PRO 2 A GLU 3 n 65 GLU 3 A SER 4 n 66 SER 4 A PHE 5 n 67 PHE 5 A ASP 6 n 68 ASP 6 A ALA 7 n 69 ALA 7 A ARG 8 n 70 ARG 8 A GLU 9 n 71 GLU 9 A GLN 10 n 72 GLN 10 A TRP 11 n 73 TRP 11 A SER 12 n 74 SER 12 A ASN 13 n 75 ASN 13 A CYS 14 n 76 CYS 14 A PRO 15 n 77 PRO 15 A THR 16 n 78 THR 16 A ILE 17 n 79 ILE 17 A ALA 18 n 80 ALA 18 A GLN 19 n 81 GLN 19 A ILE 20 n 82 ILE 20 A ARG 21 n 83 ARG 21 A ASP 22 n 84 ASP 22 A GLN 23 n 85 GLN 23 A GLY 24 n 86 GLY 24 A SER 25 n 87 SER 25 A CYS 26 n 88 CYS 26 A GLY 27 n 89 GLY 27 A SER 28 n 90 SER 28 A SER 29 n 91 SER 29 A TRP 30 n 92 TRP 30 A ALA 31 n 93 ALA 31 A PHE 32 n 94 PHE 32 A GLY 33 n 95 GLY 33 A ALA 34 n 96 ALA 34 A VAL 35 n 97 VAL 35 A GLU 36 n 98 GLU 36 A ALA 37 n 99 ALA 37 A MET 38 n 100 MET 38 A SER 39 n 101 SER 39 A ASP 40 n 102 ASP 40 A ARG 41 n 103 ARG 41 A ILE 42 n 104 ILE 42 A CYS 43 n 105 CYS 43 A ILE 44 n 106 ILE 44 A HIS 45 n 107 HIS 45 A THR 46 n 108 THR 46 A ASN 47 n 109 ASN 47 A GLY 48 n 110 GLY 48 A ARG 49 n 111 ARG 49 A VAL 50 n 112 VAL 50 A ASN 51 n 113 ASN 51 A VAL 52 n 114 VAL 52 A GLU 53 n 115 GLU 53 A VAL 54 n 116 VAL 54 A SER 55 n 117 SER 55 A ALA 56 n 118 ALA 56 A GLU 57 n 119 GLU 57 A ASP 58 n 120 ASP 58 A LEU 59 n 121 LEU 59 A LEU 60 n 122 LEU 60 A THR 61 n 123 THR 61 A CYS 62 n 124 CYS 62 A CYS 63 n 125 CYS 63 A GLY 64 n 126 GLY 64 A ILE 65 n 127 ILE 65 A GLN 66 n 128 GLN 66 A CYS 67 n 129 CYS 67 A GLY 68 n 130 GLY 68 A ASP 69 n 131 ASP 69 A GLY 70 n 132 GLY 70 A CYS 71 n 133 CYS 71 A ASN 72 n 134 ASN 72 A GLY 73 n 135 GLY 73 A GLY 74 n 136 GLY 74 A TYR 75 n 137 TYR 75 A PRO 76 n 138 PRO 76 A SER 77 n 139 SER 77 A GLY 78 n 140 GLY 78 A ALA 79 n 141 ALA 79 A TRP 80 n 142 TRP 80 A ASN 81 n 143 ASN 81 A PHE 82 n 144 PHE 82 A TRP 83 n 145 TRP 83 A THR 84 n 146 THR 84 A ARG 85 n 147 ARG 85 A LYS 86 n 148 LYS 86 A GLY 87 n 149 GLY 87 A LEU 88 n 150 LEU 88 A VAL 89 n 151 VAL 89 A SER 90 n 152 SER 90 A GLY 91 n 153 GLY 91 A GLY 92 n 154 GLY 92 A VAL 93 n 155 VAL 93 A TYR 94 n 156 TYR 94 A ASN 95 n 157 ASN 95 A SER 96 n 158 SER 96 A HIS 97 n 159 HIS 97 A ILE 98 n 160 ILE 98 A GLY 99 n 161 GLY 99 A CYS 100 n 162 CYS 100 A LEU 101 n 163 LEU 101 A PRO 102 n 164 PRO 102 A TYR 103 n 165 TYR 103 A THR 104 n 166 THR 104 A ILE 105 n 167 ILE 105 A PRO 106 n 168 PRO 106 A PRO 107 n 169 PRO 107 A CYS 108 n 170 CYS 108 A GLU 109 n 171 GLU 109 A HIS 110 n 172 HIS 110 A HIS 111 n 173 HIS 111 A VAL 112 n 174 VAL 112 A ASN 113 n 175 ASN 113 A GLY 114 n 176 GLY 114 A ALA 115 n 177 ALA 115 A ARG 116 n 178 ARG 116 A PRO 117 n 179 PRO 117 A PRO 118 n 180 PRO 118 A CYS 119 n 181 CYS 119 A THR 120 n 182 THR 120 A GLY 121 n 183 GLY 121 A GLU 122 n 184 GLU 122 A GLY 123 n 185 GLY 123 A ASP 124 n 186 ASP 124 A THR 125 n 187 THR 125 A PRO 126 n 188 PRO 126 A LYS 127 n 189 LYS 127 A CYS 128 n 190 CYS 128 A ASN 129 n 191 ASN 129 A LYS 130 n 192 LYS 130 A MET 131 n 193 MET 131 A CYS 132 n 194 CYS 132 A GLU 133 n 195 GLU 133 A ALA 134 n 196 ALA 134 A GLY 135 n 197 GLY 135 A TYR 136 n 198 TYR 136 A SER 137 n 199 SER 137 A THR 138 n 200 THR 138 A SER 139 n 201 SER 139 A TYR 140 n 202 TYR 140 A LYS 141 n 203 LYS 141 A GLU 142 n 204 GLU 142 A ASP 143 n 205 ASP 143 A LYS 144 n 206 LYS 144 A HIS 145 n 207 HIS 145 A TYR 146 n 208 TYR 146 A GLY 147 n 209 GLY 147 A TYR 148 n 210 TYR 148 A THR 149 n 211 THR 149 A SER 150 n 212 SER 150 A TYR 151 n 213 TYR 151 A SER 152 n 214 SER 152 A VAL 153 n 215 VAL 153 A SER 154 n 216 SER 154 A ASP 155 n 217 ASP 155 A SER 156 n 218 SER 156 A GLU 157 n 219 GLU 157 A LYS 158 n 220 LYS 158 A GLU 159 n 221 GLU 159 A ILE 160 n 222 ILE 160 A MET 161 n 223 MET 161 A ALA 162 n 224 ALA 162 A GLU 163 n 225 GLU 163 A ILE 164 n 226 ILE 164 A TYR 165 n 227 TYR 165 A LYS 166 n 228 LYS 166 A ASN 167 n 229 ASN 167 A GLY 168 n 230 GLY 168 A PRO 169 n 231 PRO 169 A VAL 170 n 232 VAL 170 A GLU 171 n 233 GLU 171 A GLY 172 n 234 GLY 172 A ALA 173 n 235 ALA 173 A PHE 174 n 236 PHE 174 A THR 175 n 237 THR 175 A VAL 176 n 238 VAL 176 A PHE 177 n 239 PHE 177 A SER 178 n 240 SER 178 A ASP 179 n 241 ASP 179 A PHE 180 n 242 PHE 180 A LEU 181 n 243 LEU 181 A THR 182 n 244 THR 182 A TYR 183 n 245 TYR 183 A LYS 184 n 246 LYS 184 A SER 185 n 247 SER 185 A GLY 186 n 248 GLY 186 A VAL 187 n 249 VAL 187 A TYR 188 n 250 TYR 188 A LYS 189 n 251 LYS 189 A HIS 190 n 252 HIS 190 A GLU 191 n 253 GLU 191 A ALA 192 n 254 ALA 192 A GLY 193 n 255 GLY 193 A ASP 194 n 256 ASP 194 A VAL 195 n 257 VAL 195 A MET 196 n 258 MET 196 A GLY 197 n 259 GLY 197 A GLY 198 n 260 GLY 198 A HIS 199 n 261 HIS 199 A ALA 200 n 262 ALA 200 A ILE 201 n 263 ILE 201 A ARG 202 n 264 ARG 202 A ILE 203 n 265 ILE 203 A LEU 204 n 266 LEU 204 A GLY 205 n 267 GLY 205 A TRP 206 n 268 TRP 206 A GLY 207 n 269 GLY 207 A ILE 208 n 270 ILE 208 A GLU 209 n 271 GLU 209 A ASN 210 n 272 ASN 210 A GLY 211 n 273 GLY 211 A VAL 212 n 274 VAL 212 A PRO 213 n 275 PRO 213 A TYR 214 n 276 TYR 214 A TRP 215 n 277 TRP 215 A LEU 216 n 278 LEU 216 A VAL 217 n 279 VAL 217 A ALA 218 n 280 ALA 218 A ASN 219 n 281 ASN 219 A SER 220 n 282 SER 220 A TRP 221 n 283 TRP 221 A ASN 222 n 284 ASN 222 A ALA 223 n 285 ALA 223 A ASP 224 n 286 ASP 224 A TRP 225 n 287 TRP 225 A GLY 226 n 288 GLY 226 A ASP 227 n 289 ASP 227 A ASN 228 n 290 ASN 228 A GLY 229 n 291 GLY 229 A PHE 230 n 292 PHE 230 A PHE 231 n 293 PHE 231 A LYS 232 n 294 LYS 232 A ILE 233 n 295 ILE 233 A LEU 234 n 296 LEU 234 A ARG 235 n 297 ARG 235 A GLY 236 n 298 GLY 236 A GLU 237 n 299 GLU 237 A ASN 238 n 300 ASN 238 A HIS 239 n 301 HIS 239 A CYS 240 n 302 CYS 240 A GLY 241 n 303 GLY 241 A ILE 242 n 304 ILE 242 A GLU 243 n 305 GLU 243 A SER 244 n 306 SER 244 A GLU 245 n 307 GLU 245 A ILE 246 n 308 ILE 246 A VAL 247 n 309 VAL 247 A ALA 248 n 310 ALA 248 A GLY 249 n 311 GLY 249 A ILE 250 n 312 ILE 250 A PRO 251 n 313 PRO 251 A ARG 252 n 314 ARG 252 A THR 253 n 315 THR 253 A GLN 254 n 316 GLN 254 A GLN 255 n 317 GLN 255 A TYR 256 n 318 TYR 256 A TRP 257 n 319 TRP 257 A GLY 258 n 320 GLY 258 A ARG 259 n 321 ARG 259 A PHE 260 n 322 PHE 260 A n 1 P 1 B n 2 P 2 B n 3 P 3 B n 4 P 4 B n 5 P 5 B n 6 P 6 B n 7 P 7 B n 8 P 8 B n 9 P 9 B SER 10 n 10 P SER 10 B ASP 11 n 11 P ASP 11 B ASP 12 n 12 P ASP 12 B MET 13 n 13 P MET 13 B ILE 14 n 14 P ILE 14 B ASN 15 n 15 P ASN 15 B TYR 16 n 16 P TYR 16 B ILE 17 n 17 P ILE 17 B ASN 18 n 18 P ASN 18 B LYS 19 n 19 P LYS 19 B GLN 20 n 20 P GLN 20 B ASN 21 n 21 P ASN 21 B THR 22 n 22 P THR 22 B THR 23 n 23 P THR 23 B TRP 24 n 24 P TRP 24 B GLN 25 n 25 P GLN 25 B ALA 26 n 26 P ALA 26 B GLY 27 n 27 P GLY 27 B ARG 28 n 28 P ARG 28 B ASN 29 n 29 P ASN 29 B PHE 30 n 30 P PHE 30 B TYR 31 n 31 P TYR 31 B ASN 32 n 32 P ASN 32 B VAL 33 n 33 P VAL 33 B ASP 34 n 34 P ASP 34 B ILE 35 n 35 P ILE 35 B SER 36 n 36 P SER 36 B TYR 37 n 37 P TYR 37 B LEU 38 n 38 P LEU 38 B LYS 39 n 39 P LYS 39 B LYS 40 n 40 P LYS 40 B LEU 41 n 41 P LEU 41 B CYS 42 n 42 P CYS 42 B GLY 43 n 43 P GLY 43 B THR 44 n 44 P THR 44 B VAL 45 n 45 P VAL 45 B LEU 46 n 46 P LEU 46 B GLY 47 n 47 P GLY 47 B GLY 48 n 48 P GLY 48 B PRO 49 n 49 P PRO 49 B LYS 50 n 50 P LYS 50 B LEU 51 n 51 P LEU 51 B PRO 52 n 52 P PRO 52 B GLU 53 n 53 P GLU 53 B ARG 54 n 54 P ARG 54 B VAL 55 n 55 P VAL 55 B GLY 56 n 56 P GLY 56 B PHE 57 n 57 P PHE 57 B SER 58 n 58 P SER 58 B GLU 59 n 59 P GLU 59 B ASP 60 n 60 P ASP 60 B ILE 61 n 61 P ILE 61 B ASN 62 n 62 P ASN 62 B LEU 1 n 63 LEU 1 B PRO 2 n 64 PRO 2 B GLU 3 n 65 GLU 3 B SER 4 n 66 SER 4 B PHE 5 n 67 PHE 5 B ASP 6 n 68 ASP 6 B ALA 7 n 69 ALA 7 B ARG 8 n 70 ARG 8 B GLU 9 n 71 GLU 9 B GLN 10 n 72 GLN 10 B TRP 11 n 73 TRP 11 B SER 12 n 74 SER 12 B ASN 13 n 75 ASN 13 B CYS 14 n 76 CYS 14 B PRO 15 n 77 PRO 15 B THR 16 n 78 THR 16 B ILE 17 n 79 ILE 17 B ALA 18 n 80 ALA 18 B GLN 19 n 81 GLN 19 B ILE 20 n 82 ILE 20 B ARG 21 n 83 ARG 21 B ASP 22 n 84 ASP 22 B GLN 23 n 85 GLN 23 B GLY 24 n 86 GLY 24 B SER 25 n 87 SER 25 B CYS 26 n 88 CYS 26 B GLY 27 n 89 GLY 27 B SER 28 n 90 SER 28 B SER 29 n 91 SER 29 B TRP 30 n 92 TRP 30 B ALA 31 n 93 ALA 31 B PHE 32 n 94 PHE 32 B GLY 33 n 95 GLY 33 B ALA 34 n 96 ALA 34 B VAL 35 n 97 VAL 35 B GLU 36 n 98 GLU 36 B ALA 37 n 99 ALA 37 B MET 38 n 100 MET 38 B SER 39 n 101 SER 39 B ASP 40 n 102 ASP 40 B ARG 41 n 103 ARG 41 B ILE 42 n 104 ILE 42 B CYS 43 n 105 CYS 43 B ILE 44 n 106 ILE 44 B HIS 45 n 107 HIS 45 B THR 46 n 108 THR 46 B ASN 47 n 109 ASN 47 B GLY 48 n 110 GLY 48 B ARG 49 n 111 ARG 49 B VAL 50 n 112 VAL 50 B ASN 51 n 113 ASN 51 B VAL 52 n 114 VAL 52 B GLU 53 n 115 GLU 53 B VAL 54 n 116 VAL 54 B SER 55 n 117 SER 55 B ALA 56 n 118 ALA 56 B GLU 57 n 119 GLU 57 B ASP 58 n 120 ASP 58 B LEU 59 n 121 LEU 59 B LEU 60 n 122 LEU 60 B THR 61 n 123 THR 61 B CYS 62 n 124 CYS 62 B CYS 63 n 125 CYS 63 B GLY 64 n 126 GLY 64 B ILE 65 n 127 ILE 65 B GLN 66 n 128 GLN 66 B CYS 67 n 129 CYS 67 B GLY 68 n 130 GLY 68 B ASP 69 n 131 ASP 69 B GLY 70 n 132 GLY 70 B CYS 71 n 133 CYS 71 B ASN 72 n 134 ASN 72 B GLY 73 n 135 GLY 73 B GLY 74 n 136 GLY 74 B TYR 75 n 137 TYR 75 B PRO 76 n 138 PRO 76 B SER 77 n 139 SER 77 B GLY 78 n 140 GLY 78 B ALA 79 n 141 ALA 79 B TRP 80 n 142 TRP 80 B ASN 81 n 143 ASN 81 B PHE 82 n 144 PHE 82 B TRP 83 n 145 TRP 83 B THR 84 n 146 THR 84 B ARG 85 n 147 ARG 85 B LYS 86 n 148 LYS 86 B GLY 87 n 149 GLY 87 B LEU 88 n 150 LEU 88 B VAL 89 n 151 VAL 89 B SER 90 n 152 SER 90 B GLY 91 n 153 GLY 91 B GLY 92 n 154 GLY 92 B VAL 93 n 155 VAL 93 B TYR 94 n 156 TYR 94 B ASN 95 n 157 ASN 95 B SER 96 n 158 SER 96 B HIS 97 n 159 HIS 97 B ILE 98 n 160 ILE 98 B GLY 99 n 161 GLY 99 B CYS 100 n 162 CYS 100 B LEU 101 n 163 LEU 101 B PRO 102 n 164 PRO 102 B TYR 103 n 165 TYR 103 B THR 104 n 166 THR 104 B ILE 105 n 167 ILE 105 B PRO 106 n 168 PRO 106 B PRO 107 n 169 PRO 107 B CYS 108 n 170 CYS 108 B GLU 109 n 171 GLU 109 B HIS 110 n 172 HIS 110 B HIS 111 n 173 HIS 111 B VAL 112 n 174 VAL 112 B ASN 113 n 175 ASN 113 B GLY 114 n 176 GLY 114 B ALA 115 n 177 ALA 115 B ARG 116 n 178 ARG 116 B PRO 117 n 179 PRO 117 B PRO 118 n 180 PRO 118 B CYS 119 n 181 CYS 119 B THR 120 n 182 THR 120 B GLY 121 n 183 GLY 121 B GLU 122 n 184 GLU 122 B GLY 123 n 185 GLY 123 B ASP 124 n 186 ASP 124 B THR 125 n 187 THR 125 B PRO 126 n 188 PRO 126 B LYS 127 n 189 LYS 127 B CYS 128 n 190 CYS 128 B ASN 129 n 191 ASN 129 B LYS 130 n 192 LYS 130 B MET 131 n 193 MET 131 B CYS 132 n 194 CYS 132 B GLU 133 n 195 GLU 133 B ALA 134 n 196 ALA 134 B GLY 135 n 197 GLY 135 B TYR 136 n 198 TYR 136 B SER 137 n 199 SER 137 B THR 138 n 200 THR 138 B SER 139 n 201 SER 139 B TYR 140 n 202 TYR 140 B LYS 141 n 203 LYS 141 B GLU 142 n 204 GLU 142 B ASP 143 n 205 ASP 143 B LYS 144 n 206 LYS 144 B HIS 145 n 207 HIS 145 B TYR 146 n 208 TYR 146 B GLY 147 n 209 GLY 147 B TYR 148 n 210 TYR 148 B THR 149 n 211 THR 149 B SER 150 n 212 SER 150 B TYR 151 n 213 TYR 151 B SER 152 n 214 SER 152 B VAL 153 n 215 VAL 153 B SER 154 n 216 SER 154 B ASP 155 n 217 ASP 155 B SER 156 n 218 SER 156 B GLU 157 n 219 GLU 157 B LYS 158 n 220 LYS 158 B GLU 159 n 221 GLU 159 B ILE 160 n 222 ILE 160 B MET 161 n 223 MET 161 B ALA 162 n 224 ALA 162 B GLU 163 n 225 GLU 163 B ILE 164 n 226 ILE 164 B TYR 165 n 227 TYR 165 B LYS 166 n 228 LYS 166 B ASN 167 n 229 ASN 167 B GLY 168 n 230 GLY 168 B PRO 169 n 231 PRO 169 B VAL 170 n 232 VAL 170 B GLU 171 n 233 GLU 171 B GLY 172 n 234 GLY 172 B ALA 173 n 235 ALA 173 B PHE 174 n 236 PHE 174 B THR 175 n 237 THR 175 B VAL 176 n 238 VAL 176 B PHE 177 n 239 PHE 177 B SER 178 n 240 SER 178 B ASP 179 n 241 ASP 179 B PHE 180 n 242 PHE 180 B LEU 181 n 243 LEU 181 B THR 182 n 244 THR 182 B TYR 183 n 245 TYR 183 B LYS 184 n 246 LYS 184 B SER 185 n 247 SER 185 B GLY 186 n 248 GLY 186 B VAL 187 n 249 VAL 187 B TYR 188 n 250 TYR 188 B LYS 189 n 251 LYS 189 B HIS 190 n 252 HIS 190 B GLU 191 n 253 GLU 191 B ALA 192 n 254 ALA 192 B GLY 193 n 255 GLY 193 B ASP 194 n 256 ASP 194 B VAL 195 n 257 VAL 195 B MET 196 n 258 MET 196 B GLY 197 n 259 GLY 197 B GLY 198 n 260 GLY 198 B HIS 199 n 261 HIS 199 B ALA 200 n 262 ALA 200 B ILE 201 n 263 ILE 201 B ARG 202 n 264 ARG 202 B ILE 203 n 265 ILE 203 B LEU 204 n 266 LEU 204 B GLY 205 n 267 GLY 205 B TRP 206 n 268 TRP 206 B GLY 207 n 269 GLY 207 B ILE 208 n 270 ILE 208 B GLU 209 n 271 GLU 209 B ASN 210 n 272 ASN 210 B GLY 211 n 273 GLY 211 B VAL 212 n 274 VAL 212 B PRO 213 n 275 PRO 213 B TYR 214 n 276 TYR 214 B TRP 215 n 277 TRP 215 B LEU 216 n 278 LEU 216 B VAL 217 n 279 VAL 217 B ALA 218 n 280 ALA 218 B ASN 219 n 281 ASN 219 B SER 220 n 282 SER 220 B TRP 221 n 283 TRP 221 B ASN 222 n 284 ASN 222 B ALA 223 n 285 ALA 223 B ASP 224 n 286 ASP 224 B TRP 225 n 287 TRP 225 B GLY 226 n 288 GLY 226 B ASP 227 n 289 ASP 227 B ASN 228 n 290 ASN 228 B GLY 229 n 291 GLY 229 B PHE 230 n 292 PHE 230 B PHE 231 n 293 PHE 231 B LYS 232 n 294 LYS 232 B ILE 233 n 295 ILE 233 B LEU 234 n 296 LEU 234 B ARG 235 n 297 ARG 235 B GLY 236 n 298 GLY 236 B GLU 237 n 299 GLU 237 B ASN 238 n 300 ASN 238 B HIS 239 n 301 HIS 239 B CYS 240 n 302 CYS 240 B GLY 241 n 303 GLY 241 B ILE 242 n 304 ILE 242 B GLU 243 n 305 GLU 243 B SER 244 n 306 SER 244 B GLU 245 n 307 GLU 245 B ILE 246 n 308 ILE 246 B VAL 247 n 309 VAL 247 B ALA 248 n 310 ALA 248 B GLY 249 n 311 GLY 249 B ILE 250 n 312 ILE 250 B PRO 251 n 313 PRO 251 B ARG 252 n 314 ARG 252 B THR 253 n 315 THR 253 B GLN 254 n 316 GLN 254 B GLN 255 n 317 GLN 255 B TYR 256 n 318 TYR 256 B TRP 257 n 319 TRP 257 B GLY 258 n 320 GLY 258 B ARG 259 n 321 ARG 259 B PHE 260 n 322 PHE 260 B author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLY 207 A O GLY 269 A N TYR 214 A N TYR 276 A O TRP 215 A O TRP 277 A N ILE 233 A N ILE 295 B O GLY 207 B O GLY 269 B N TYR 214 B N TYR 276 B O TRP 215 B O TRP 277 B N ILE 233 B N ILE 295 P A O GLN 25 A O GLN 25 A N SER 185 A N SER 247 A O TYR 148 A O TYR 210 A N ILE 250 A N ILE 312 A O VAL 170 A O VAL 232 A N ILE 203 A N ILE 265 P B O GLN 25 B O GLN 25 B N SER 185 B N SER 247 B O TYR 148 B O TYR 210 B N ILE 250 B N ILE 312 B O VAL 170 B O VAL 232 B N ILE 203 B N ILE 265 P 1 A CB SER 10 A CB SER 10 0 Y P 1 A OG SER 10 A OG SER 10 0 Y P 1 A CB LYS 19 A CB LYS 19 0 Y P 1 A CG LYS 19 A CG LYS 19 0 Y P 1 A CD LYS 19 A CD LYS 19 0 Y P 1 A CE LYS 19 A CE LYS 19 0 Y P 1 A NZ LYS 19 A NZ LYS 19 0 Y P 1 A CB GLU 59 A CB GLU 59 0 Y P 1 A CG GLU 59 A CG GLU 59 0 Y P 1 A CD GLU 59 A CD GLU 59 0 Y P 1 A OE1 GLU 59 A OE1 GLU 59 0 Y P 1 A OE2 GLU 59 A OE2 GLU 59 0 Y P 1 A CB ILE 61 A CB ILE 61 0 Y P 1 A CG1 ILE 61 A CG1 ILE 61 0 Y P 1 A CG2 ILE 61 A CG2 ILE 61 0 Y P 1 A CD1 ILE 61 A CD1 ILE 61 0 Y 1 A CB ARG 116 A CB ARG 178 0 Y 1 A CG ARG 116 A CG ARG 178 0 Y 1 A CD ARG 116 A CD ARG 178 0 Y 1 A NE ARG 116 A NE ARG 178 0 Y 1 A CZ ARG 116 A CZ ARG 178 0 Y 1 A NH1 ARG 116 A NH1 ARG 178 0 Y 1 A NH2 ARG 116 A NH2 ARG 178 0 Y P 1 B CB SER 10 B CB SER 10 0 Y P 1 B OG SER 10 B OG SER 10 0 Y P 1 B CB LYS 19 B CB LYS 19 0 Y P 1 B CG LYS 19 B CG LYS 19 0 Y P 1 B CD LYS 19 B CD LYS 19 0 Y P 1 B CE LYS 19 B CE LYS 19 0 Y P 1 B NZ LYS 19 B NZ LYS 19 0 Y P 1 B CB GLU 59 B CB GLU 59 0 Y P 1 B CG GLU 59 B CG GLU 59 0 Y P 1 B CD GLU 59 B CD GLU 59 0 Y P 1 B OE1 GLU 59 B OE1 GLU 59 0 Y P 1 B OE2 GLU 59 B OE2 GLU 59 0 Y P 1 B CB ILE 61 B CB ILE 61 0 Y P 1 B CG1 ILE 61 B CG1 ILE 61 0 Y P 1 B CG2 ILE 61 B CG2 ILE 61 0 Y P 1 B CD1 ILE 61 B CD1 ILE 61 0 Y 1 B CB ARG 116 B CB ARG 178 0 Y 1 B CG ARG 116 B CG ARG 178 0 Y 1 B CD ARG 116 B CD ARG 178 0 Y 1 B NE ARG 116 B NE ARG 178 0 Y 1 B CZ ARG 116 B CZ ARG 178 0 Y 1 B NH1 ARG 116 B NH1 ARG 178 0 Y 1 B NH2 ARG 116 B NH2 ARG 178 0 Y P 1 A HIS 1 A HIS 1 1 Y P 1 A ASP 2 A ASP 2 1 Y P 1 A LYS 3 A LYS 3 1 Y P 1 A PRO 4 A PRO 4 1 Y P 1 A SER 5 A SER 5 1 Y P 1 A PHE 6 A PHE 6 1 Y P 1 A HIS 7 A HIS 7 1 Y P 1 A PRO 8 A PRO 8 1 Y P 1 A LEU 9 A LEU 9 1 Y P 1 B HIS 1 B HIS 1 1 Y P 1 B ASP 2 B ASP 2 1 Y P 1 B LYS 3 B LYS 3 1 Y P 1 B PRO 4 B PRO 4 1 Y P 1 B SER 5 B SER 5 1 Y P 1 B PHE 6 B PHE 6 1 Y P 1 B HIS 7 B HIS 7 1 Y P 1 B PRO 8 B PRO 8 1 Y P 1 B LEU 9 B LEU 9 1 Y 1 A A HD1 HH HIS TYR 145 256 0.83 P 1 A A HH HD1 TYR HIS 37 110 0.85 1 A A HG H1 SER HOH 220 414 1.14 1 B B HG H SER ASP 55 58 1.26 1 A A H HG1 CYS THR 71 125 1.27 1 A A H H1 VAL HOH 93 409 1.29 P 1 A THR 23 -48.74 -15.60 P 1 A PHE 57 -160.74 4.59 1 A ILE 17 -56.07 -0.30 1 A SER 25 -92.09 36.26 1 A GLU 109 -67.28 61.69 1 A ASN 113 -165.64 116.23 1 A ALA 115 -59.87 104.42 1 A PRO 117 -44.47 96.34 1 A GLU 122 -132.74 -154.32 1 A LYS 130 -63.80 78.82 1 A THR 138 -179.43 131.07 1 A ASP 155 -84.07 36.63 1 A HIS 190 -27.59 113.16 1 A ASN 222 76.92 140.97 1 A GLU 237 -77.28 44.23 1 A ASN 238 32.37 56.79 1 A CYS 240 55.04 13.57 1 A GLU 245 -117.21 62.07 1 A GLN 255 -57.30 -5.43 P 1 B ASP 11 -39.79 -32.92 P 1 B THR 23 -48.59 -15.14 P 1 B PHE 57 -162.19 4.16 1 B ILE 17 -55.87 -1.57 1 B SER 25 -91.22 36.06 1 B GLU 109 -67.62 61.30 1 B ASN 113 -165.00 116.41 1 B PRO 117 -43.86 96.06 1 B GLU 122 -133.04 -153.78 1 B CYS 128 -67.15 85.07 1 B LYS 130 -63.79 79.87 1 B THR 138 -179.35 131.76 1 B SER 154 -49.90 163.89 1 B ASP 155 -86.04 35.34 1 B HIS 190 -28.65 112.06 1 B ASN 222 76.10 141.78 1 B GLU 237 -77.10 46.51 1 B ASN 238 29.58 57.34 1 B CYS 240 54.26 13.92 1 B GLU 245 -116.94 64.67 1 B GLN 255 -56.88 -6.86 32.4 0.27 0.22 0.22 2.8 8.0 18037 10.0 92. 1 2.0 2.8 8.0 33 4889 0 0 4856 0.009 1.44 22.89 1.04 2.0 3.0 2.8 74. 1MIR 19015 1. 0.097 1 4.4 91. data collection R-AXIS SOFTWARE model building X-PLOR 3.1 refinement X-PLOR 3.1 data reduction R-AXIS phasing X-PLOR 3.1 RAT PROCATHEPSIN B 1 N N 1 N N 2 N N 2 N N A ASP 11 A ASP 11 HELX_P A GLN 20 A GLN 20 1 1 10 P P A ILE 35 A ILE 35 HELX_P A LEU 41 A LEU 41 1 2 7 P P A ALA 7 A ALA 69 HELX_P A GLN 10 A GLN 72 1 3 4 A PRO 15 A PRO 77 HELX_P A ALA 18 A ALA 80 5 4 4 A SER 29 A SER 91 HELX_P A THR 46 A THR 108 1 5 18 A ALA 56 A ALA 118 HELX_P A CYS 62 A CYS 124 1 6 7 A GLY 64 A GLY 126 HELX_P A GLN 66 A GLN 128 5 7 3 A GLY 70 A GLY 132 HELX_P A ASN 72 A ASN 134 5 8 3 A PRO 76 A PRO 138 HELX_P A ARG 85 A ARG 147 1 9 10 A TYR 140 A TYR 202 HELX_P A GLU 142 A GLU 204 5 10 3 A GLU 157 A GLU 219 HELX_P A ASN 167 A ASN 229 1 11 11 A SER 178 A SER 240 HELX_P A THR 182 A THR 244 5 12 5 A HIS 239 A HIS 301 HELX_P A GLY 241 A GLY 303 5 13 3 A GLN 254 A GLN 316 HELX_P A TYR 256 A TYR 318 5 14 3 B ASP 11 B ASP 11 HELX_P B GLN 20 B GLN 20 1 15 10 P P B ILE 35 B ILE 35 HELX_P B LEU 41 B LEU 41 1 16 7 P P B ALA 7 B ALA 69 HELX_P B GLN 10 B GLN 72 1 17 4 B PRO 15 B PRO 77 HELX_P B ALA 18 B ALA 80 5 18 4 B SER 29 B SER 91 HELX_P B THR 46 B THR 108 1 19 18 B ALA 56 B ALA 118 HELX_P B CYS 62 B CYS 124 1 20 7 B GLY 64 B GLY 126 HELX_P B GLN 66 B GLN 128 5 21 3 B GLY 70 B GLY 132 HELX_P B ASN 72 B ASN 134 5 22 3 B PRO 76 B PRO 138 HELX_P B ARG 85 B ARG 147 1 23 10 B TYR 140 B TYR 202 HELX_P B GLU 142 B GLU 204 5 24 3 B GLU 157 B GLU 219 HELX_P B ASN 167 B ASN 229 1 25 11 B SER 178 B SER 240 HELX_P B THR 182 B THR 244 5 26 5 B HIS 239 B HIS 301 HELX_P B GLY 241 B GLY 303 5 27 3 B GLN 254 B GLN 316 HELX_P B TYR 256 B TYR 318 5 28 3 disulf 2.020 A CYS 14 A SG CYS 76 1_555 A CYS 43 A SG CYS 105 1_555 disulf 2.028 A CYS 26 A SG CYS 88 1_555 A CYS 71 A SG CYS 133 1_555 disulf 2.026 A CYS 62 A SG CYS 124 1_555 A CYS 128 A SG CYS 190 1_555 disulf 2.021 A CYS 63 A SG CYS 125 1_555 A CYS 67 A SG CYS 129 1_555 disulf 2.020 A CYS 100 A SG CYS 162 1_555 A CYS 132 A SG CYS 194 1_555 disulf 2.029 A CYS 108 A SG CYS 170 1_555 A CYS 119 A SG CYS 181 1_555 disulf 2.026 B CYS 14 B SG CYS 76 1_555 B CYS 43 B SG CYS 105 1_555 disulf 2.036 B CYS 26 B SG CYS 88 1_555 B CYS 71 B SG CYS 133 1_555 disulf 2.037 B CYS 62 B SG CYS 124 1_555 B CYS 128 B SG CYS 190 1_555 disulf 2.014 B CYS 63 B SG CYS 125 1_555 B CYS 67 B SG CYS 129 1_555 disulf 2.029 B CYS 100 B SG CYS 162 1_555 B CYS 132 B SG CYS 194 1_555 disulf 2.027 B CYS 108 B SG CYS 170 1_555 B CYS 119 B SG CYS 181 1_555 HYDROLASE HYDROLASE, THIOL PROTEASE, CYSTEINE PROTEASE given 0.212300 0.698100 -0.683900 0.703700 -0.594800 -0.388700 -0.678100 -0.398700 -0.617500 15.37400 43.71100 72.10600 CATB_RAT UNP 1 1 P00787 MWWSLIPLSCLLALTSAHDKPSSHPLSDDMINYINKQNTTWQAGRNFYNVDISYLKKLCGTVLGGPNLPERVGFSEDINL PESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWN FWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGSRPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIM AEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNVDWGDNGFFKILRGENHCG IESEIVAGIPRTQQYWGRF 18 339 1MIR 1 260 P00787 A 1 63 322 18 339 1MIR 1 260 P00787 B 1 63 322 1 SER conflict PHE 6 1MIR P A P00787 UNP 23 6 1 ASN conflict LYS 50 1MIR P A P00787 UNP 67 50 1 CYS engineered mutation SER 29 1MIR A P00787 UNP 108 91 1 SER engineered mutation ALA 115 1MIR A P00787 UNP 194 177 1 VAL variant ALA 223 1MIR A P00787 UNP 302 285 2 SER conflict PHE 6 1MIR P B P00787 UNP 23 6 2 ASN conflict LYS 50 1MIR P B P00787 UNP 67 50 2 CYS engineered mutation SER 29 1MIR B P00787 UNP 108 91 2 SER engineered mutation ALA 115 1MIR B P00787 UNP 194 177 2 VAL variant ALA 223 1MIR B P00787 UNP 302 285 3 3 2 2 2 2 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TRP 206 A TRP 268 A GLU 209 A GLU 271 A VAL 212 A VAL 274 A ALA 218 A ALA 280 A PHE 230 A PHE 292 A LEU 234 A LEU 296 B TRP 206 B TRP 268 B GLU 209 B GLU 271 B VAL 212 B VAL 274 B ALA 218 B ALA 280 B PHE 230 B PHE 292 B LEU 234 B LEU 296 A TRP 24 A TRP 24 A ALA 26 A ALA 26 P P A TYR 183 A TYR 245 A GLY 186 A GLY 248 A GLY 147 A GLY 209 A VAL 153 A VAL 215 A ILE 246 A ILE 308 A PRO 251 A PRO 313 A VAL 170 A VAL 232 A PHE 177 A PHE 239 A VAL 195 A VAL 257 A ILE 203 A ILE 265 B TRP 24 B TRP 24 B ALA 26 B ALA 26 P P B TYR 183 B TYR 245 B GLY 186 B GLY 248 B GLY 147 B GLY 209 B VAL 153 B VAL 215 B ILE 246 B ILE 308 B PRO 251 B PRO 313 B VAL 170 B VAL 232 B PHE 177 B PHE 239 B VAL 195 B VAL 257 B ILE 203 B ILE 265 ACTIVE SITE WITH CYS 29 MUTATED TO SER. Unknown 3 ACTIVE SITE WITH CYS 29 MUTATED TO SER. Unknown 3 A SER 29 A SER 91 3 1_555 A HIS 199 A HIS 261 3 1_555 A ASN 219 A ASN 281 3 1_555 B SER 29 B SER 91 3 1_555 B HIS 199 B HIS 261 3 1_555 B ASN 219 B ASN 281 3 1_555 152 P 31 2 1