1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Wu, M.
Turner, D.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
US
Biochemistry
BICHAW
0033
0006-2960
35
9677
9689
10.1021/bi960133q
8703939
Solution structure of (rGCGGACGC)2 by two-dimensional NMR and the iterative relaxation matrix approach.
1996
10.2210/pdb1mis/pdb
pdb_00001mis
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
ANTI-PARALLEL RNA DUPLEX WITH TANDEM G\:A MISMATCHES
2580.617
RNA (5'-R(*GP*CP*GP*GP*AP*CP*GP*C)-3')
2
syn
polymer
no
no
GCGGACGC
GCGGACGC
A,B
polyribonucleotide
n
n
n
n
n
n
n
n
5.599
1
19
A
1
B
16
-4.806
A_G1:C16_B
1
-12.231
-0.670
0.535
-0.268
-3.908
1
19
A
2
B
15
-3.645
A_C2:G15_B
2
-16.533
-0.431
0.404
-0.064
1.461
1
19
A
3
B
14
-6.433
A_G3:C14_B
3
-13.388
-0.638
0.801
-0.359
9.533
8
A
4
B
13
-19.282
A_G4:A13_B
4
-20.517
-1.198
0.040
1.304
-9.910
8
A
5
B
12
-19.191
A_A5:G12_B
5
-20.612
1.223
0.049
1.307
-1.820
1
19
A
6
B
11
-6.776
A_C6:G11_B
6
-14.006
0.647
0.817
-0.376
3.980
1
19
A
7
B
10
-3.511
A_G7:C10_B
7
-14.984
0.444
0.388
-0.050
-4.276
1
19
A
8
B
9
-4.158
A_C8:G9_B
8
-10.376
0.646
0.479
-0.229
2.664
36.540
A
A
1
2
16.575
B
B
16
15
3.221
10.261
-0.056
-1.605
AA_G1C2:G15C16_BB
1
-0.348
0.562
35.115
-3.861
0.045
2.254
33.232
A
A
2
3
12.500
B
B
15
14
2.693
7.084
-0.085
-1.804
AA_C2G3:C14G15_BB
2
-3.540
6.247
32.300
-4.064
-0.305
2.883
34.769
A
A
3
4
-4.836
B
B
14
13
2.946
-2.870
-0.852
-1.913
AA_G3G4:A13C14_BB
3
6.575
-11.078
34.043
-2.807
2.330
2.687
33.555
A
A
4
5
19.230
B
B
13
12
3.540
10.911
0.006
-2.117
AA_G4A5:G12A13_BB
4
0.019
-0.034
31.780
-5.421
-0.008
2.901
34.700
A
A
5
6
-5.200
B
B
12
11
2.947
-3.080
0.832
-1.893
AA_A5C6:G11G12_BB
5
-6.439
10.869
33.980
-2.747
-2.287
2.347
32.601
A
A
6
7
10.540
B
B
11
10
2.709
5.874
0.089
-1.784
AA_C6G7:C10G11_BB
6
3.629
-6.511
31.881
-3.977
0.334
2.649
35.390
A
A
7
8
16.466
B
B
10
9
3.211
9.884
0.060
-1.632
AA_G7C8:G9C10_BB
7
0.427
-0.711
34.022
-4.016
-0.041
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1997-07-07
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1997-03-26
REL
MINIMIZED AVERAGE : STRUCTURE
1
BIOSYM TECHNOLOGIES, INC.
refinement
DISCOVER, AMBER FORCE FIELD
FIELD
G
1
n
1
G
1
A
C
2
n
2
C
2
A
G
3
n
3
G
3
A
G
4
n
4
G
4
A
A
5
n
5
A
5
A
C
6
n
6
C
6
A
G
7
n
7
G
7
A
C
8
n
8
C
8
A
G
9
n
1
G
9
B
C
10
n
2
C
10
B
G
11
n
3
G
11
B
G
12
n
4
G
12
B
A
13
n
5
A
13
B
C
14
n
6
C
14
B
G
15
n
7
G
15
B
C
16
n
8
C
16
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
refinement
AMBER
STRUCTURE OF RNA (5'-R(GP*CP*GP*GP*AP*CP*GP*C)-3') ANTI-PARALLEL RNA DUPLEX WITH TANDEM G:A MISMATCHES, NMR, MINIMIZED AVERAGE STRUCTURE
1
N
N
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
B
C
16
B
N3
C
8
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
B
C
16
B
O2
C
8
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
B
C
16
B
N4
C
8
1_555
hydrog
WATSON-CRICK
A
C
2
A
N3
C
2
1_555
B
G
15
B
N1
G
7
1_555
hydrog
WATSON-CRICK
A
C
2
A
N4
C
2
1_555
B
G
15
B
O6
G
7
1_555
hydrog
WATSON-CRICK
A
C
2
A
O2
C
2
1_555
B
G
15
B
N2
G
7
1_555
hydrog
WATSON-CRICK
A
G
3
A
N1
G
3
1_555
B
C
14
B
N3
C
6
1_555
hydrog
WATSON-CRICK
A
G
3
A
N2
G
3
1_555
B
C
14
B
O2
C
6
1_555
hydrog
WATSON-CRICK
A
G
3
A
O6
G
3
1_555
B
C
14
B
N4
C
6
1_555
hydrog
TYPE_8_PAIR
A
G
4
A
N1
G
4
1_555
B
A
13
B
N1
A
5
1_555
hydrog
TYPE_8_PAIR
A
G
4
A
O6
G
4
1_555
B
A
13
B
N6
A
5
1_555
hydrog
A-G MISPAIR
A
A
5
A
N6
A
5
1_555
B
G
11
B
O6
G
3
1_555
hydrog
TYPE_8_PAIR
A
A
5
A
N1
A
5
1_555
B
G
12
B
N1
G
4
1_555
hydrog
TYPE_8_PAIR
A
A
5
A
N6
A
5
1_555
B
G
12
B
O6
G
4
1_555
hydrog
WATSON-CRICK
A
C
6
A
N3
C
6
1_555
B
G
11
B
N1
G
3
1_555
hydrog
WATSON-CRICK
A
C
6
A
N4
C
6
1_555
B
G
11
B
O6
G
3
1_555
hydrog
WATSON-CRICK
A
C
6
A
O2
C
6
1_555
B
G
11
B
N2
G
3
1_555
hydrog
WATSON-CRICK
A
G
7
A
N1
G
7
1_555
B
C
10
B
N3
C
2
1_555
hydrog
WATSON-CRICK
A
G
7
A
N2
G
7
1_555
B
C
10
B
O2
C
2
1_555
hydrog
WATSON-CRICK
A
G
7
A
O6
G
7
1_555
B
C
10
B
N4
C
2
1_555
hydrog
WATSON-CRICK
A
C
8
A
N3
C
8
1_555
B
G
9
B
N1
G
1
1_555
hydrog
WATSON-CRICK
A
C
8
A
N4
C
8
1_555
B
G
9
B
O6
G
1
1_555
hydrog
WATSON-CRICK
A
C
8
A
O2
C
8
1_555
B
G
9
B
N2
G
1
1_555
RNA
RNA, TANDEM G:A MISMATCH, RIBONUCLEIC ACID
1MIS
PDB
1
1MIS
1
8
1MIS
1
8
1MIS
A
1
1
8
9
16
1MIS
9
16
1MIS
B
1
1
8
1
P 1