0.019272
0.000000
0.003415
0.000000
0.010032
0.000000
0.000000
0.000000
0.015451
0.00000
0.00000
0.00000
Perederina, A.
Nevskaya, N.
Nikonov, O.
Nikulin, A.
Dumas, P.
Yao, M.
Tanaka, I.
Garber, M.
Gongadze, G.
Nikonov, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
100.05
90.00
51.89
99.60
65.73
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
RNA
RNARFU
2122
1355-8382
8
1548
1557
12515387
Detailed analysis of RNA-protein interactions within the bacterial ribosomal
protein L5/5S rRNA complex
2002
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MAD
M
x-ray
1
0.9680
1.0
ID14-1
ESRF
0.9680
SYNCHROTRON
ESRF BEAMLINE ID14-1
10847.543
5S rRNA fragment
2
man
polymer
21155.387
50S ribosomal protein L5
2
man
polymer
24.305
MAGNESIUM ION
4
syn
non-polymer
39.098
POTASSIUM ION
2
syn
non-polymer
18.015
water
187
nat
water
no
no
GGCACCUGACCCCAUGCCGAACUCAGAAGUGCCC
GGCACCUGACCCCAUGCCGAACUCAGAAGUGCCC
C,D
polyribonucleotide
no
yes
MPLDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNF
KLRKGMPIGLRVTLRRDR(MSE)WIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRG
(MSE)DIAVVTTAETDEEARALLELLGFPFRK
MPLDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNF
KLRKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVV
TTAETDEEARALLELLGFPFRK
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
sample
in vitro transcription
562
Escherichia coli
Thermus
Escherichia
sample
274
Thermus thermophilus
562
Escherichia coli
PLASMID
1
2.61
52.91
VAPOR DIFFUSION, HANGING DROP
6.5
sodium cacodylate, magnesium acetate, potassium chlorate, PEG 8000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
sodium cacodylate
1
magnesium acetate
1
potassium chlorate
1
PEG 8000
1
-7.153
1
19
C
26
C
58
-2.286
C_G26:C58_C
1
-4.389
-0.088
-0.138
-0.080
1.283
1
19
C
27
C
57
1.712
C_G27:C57_C
2
-9.158
-0.330
0.135
-0.053
12.936
1
19
C
28
C
56
-3.874
C_C28:G56_C
3
-6.996
-0.057
-0.050
-0.061
4.611
1
20
C
29
C
55
3.638
C_A29:U55_C
4
-2.130
-0.055
-0.072
-0.177
3.231
1
19
C
30
C
54
5.976
C_C30:G54_C
5
-14.581
0.130
-0.718
-0.163
-2.957
1
19
C
31
C
51
4.113
C_C31:G51_C
6
-18.845
0.077
0.128
-0.144
3.385
1
20
C
32
C
50
3.848
C_U32:A50_C
7
-13.779
0.130
0.487
-0.190
-3.611
1
19
C
33
C
49
0.479
C_G33:C49_C
8
-19.232
-0.182
0.308
-0.130
5.100
1
20
C
34
C
48
3.459
C_A34:U48_C
9
-17.630
-0.143
0.465
-0.093
9.140
1
19
C
38
C
44
-0.601
C_C38:G44_C
10
-9.299
-0.072
0.257
-0.189
-25.879
5
C
39
C
46
61.598
C_A39:A46_C
11
-4.337
6.252
-0.253
-0.023
-1.894
C
40
C
45
13.700
C_U40:A45_C
12
22.541
6.947
0.770
-4.290
-4.425
1
19
D
26
D
58
0.863
D_G26:C58_D
13
-10.579
-0.112
0.229
-0.150
1.334
1
19
D
27
D
57
2.392
D_G27:C57_D
14
-5.197
-0.341
0.042
-0.109
5.751
1
19
D
28
D
56
-0.815
D_C28:G56_D
15
-9.272
0.069
0.348
-0.163
-1.938
1
20
D
29
D
55
2.248
D_A29:U55_D
16
0.821
-0.097
-0.195
-0.130
-3.447
1
19
D
30
D
54
3.948
D_C30:G54_D
17
-6.618
0.209
-0.394
-0.137
5.896
1
19
D
31
D
51
1.260
D_C31:G51_D
18
-18.057
0.154
0.500
-0.212
4.424
1
20
D
32
D
50
4.947
D_U32:A50_D
19
-13.237
-0.121
0.183
-0.082
-4.282
1
19
D
33
D
49
-0.947
D_G33:C49_D
20
-18.872
-0.110
0.330
-0.092
1.981
1
20
D
34
D
48
-0.298
D_A34:U48_D
21
-16.365
0.173
0.194
-0.174
2.720
1
19
D
38
D
44
-5.753
D_C38:G44_D
22
-10.230
-0.188
0.463
-0.366
-25.623
5
D
39
D
46
63.000
D_A39:A46_D
23
-0.055
6.315
-0.245
-0.156
-5.325
D
40
D
45
12.600
D_U40:A45_D
24
14.437
6.906
0.901
-4.425
2.811
32.599
C
C
26
27
9.063
C
C
58
57
3.091
5.064
-0.151
-1.637
CC_G26G27:C57C58_CC
1
-2.367
4.237
32.129
-3.717
-0.105
2.761
33.051
C
C
27
28
12.264
C
C
57
56
3.097
6.927
-0.704
-1.286
CC_G27C28:G56C57_CC
2
0.386
-0.684
32.334
-3.323
1.297
2.218
34.072
C
C
28
29
25.431
C
C
56
55
3.404
14.427
0.384
-1.990
CC_C28A29:U55G56_CC
3
-3.614
6.370
30.742
-5.477
-1.176
3.261
34.402
C
C
29
30
5.224
C
C
55
54
3.347
3.063
0.819
-1.970
CC_A29C30:G54U55_CC
4
7.377
-12.581
33.489
-3.821
-0.206
2.911
57.617
C
C
30
31
16.801
C
C
54
51
3.397
16.009
2.663
-1.000
CC_C30C31:G51G54_CC
5
-2.673
2.805
55.473
-1.889
-2.905
2.501
31.715
C
C
31
32
18.546
C
C
51
50
3.108
9.923
0.247
-1.213
CC_C31U32:A50G51_CC
6
-5.411
10.113
29.681
-3.841
-1.335
2.506
29.197
C
C
32
33
17.719
C
C
50
49
3.196
8.785
0.068
-1.826
CC_U32G33:C49A50_CC
7
2.880
-5.809
27.725
-5.332
0.425
2.840
37.450
C
C
33
34
5.879
C
C
49
48
2.986
3.769
-0.559
-1.437
CC_G33A34:U48C49_CC
8
-0.542
0.846
37.263
-2.680
0.806
3.088
127.457
C
C
34
38
-2.535
C
C
48
44
3.162
-4.546
-1.480
3.567
CC_A34C38:G44U48_CC
9
0.596
-0.332
127.411
2.023
0.830
3.017
-20.252
C
C
38
39
-9.763
C
C
44
46
3.989
2.266
-2.713
-1.105
CC_C38A39:A46G44_CC
10
20.100
86.613
-1.013
1.021
11.110
1.950
34.113
C
C
39
40
13.916
C
C
46
45
2.889
8.031
-2.583
-1.161
CC_A39U40:A45A46_CC
11
7.223
-12.516
32.406
-2.948
5.275
2.648
30.840
D
D
26
27
10.242
D
D
58
57
3.060
5.420
-0.765
-2.123
DD_G26G27:C57C58_DD
12
0.107
-0.203
30.371
-4.921
1.456
2.800
34.977
D
D
27
28
16.372
D
D
57
56
3.221
9.700
-0.351
-1.190
DD_G27C28:G56C57_DD
13
-3.814
6.438
33.434
-3.359
0.042
2.453
30.925
D
D
28
29
20.252
D
D
56
55
3.347
10.590
0.023
-2.090
DD_C28A29:U55G56_DD
14
-0.543
1.038
29.092
-5.796
-0.139
3.159
36.324
D
D
29
30
8.080
D
D
55
54
3.390
5.015
0.829
-1.964
DD_A29C30:G54U55_DD
15
3.428
-5.522
35.829
-3.857
-0.848
2.370
54.704
D
D
30
31
14.505
D
D
54
51
3.196
13.153
2.524
-1.239
DD_C30C31:G51G54_DD
16
-9.842
10.853
52.362
-2.038
-3.264
2.847
31.789
D
D
31
32
13.630
D
D
51
50
3.223
7.395
0.170
-1.304
DD_C31U32:A50G51_DD
17
2.023
-3.728
30.873
-3.657
0.038
2.290
31.710
D
D
32
33
22.519
D
D
50
49
3.260
12.012
0.007
-1.990
DD_U32G33:C49A50_DD
18
-0.491
0.920
29.397
-5.593
-0.093
2.993
35.599
D
D
33
34
4.669
D
D
49
48
3.122
2.851
-0.601
-1.280
DD_G33A34:U48C49_DD
19
1.150
-1.883
35.470
-2.482
1.140
3.243
129.337
D
D
34
38
-2.767
D
D
48
44
3.307
-5.001
-1.482
3.320
DD_A34C38:G44U48_DD
20
-0.895
0.495
129.283
1.874
0.813
2.780
-19.300
D
D
38
39
-8.859
D
D
44
46
3.668
1.974
-2.445
-1.205
DD_C38A39:A46G44_DD
21
19.162
86.006
-1.203
1.744
10.677
1.898
33.082
D
D
39
40
12.152
D
D
46
45
3.016
6.783
-2.542
-1.227
DD_A39U40:A45A46_DD
22
9.267
-16.602
31.077
-3.043
5.679
repository
Initial release
Version format compliance
Version format compliance
1
0
2003-01-21
1
1
2008-04-28
1
2
2011-07-13
RCSB
Y
RCSB
2002-08-28
REL
REL
MG
MAGNESIUM ION
K
POTASSIUM ION
HOH
water
MG
3
3
MG
MG
203
C
K
6
4
K
K
206
C
MG
4
3
MG
MG
204
D
K
5
4
K
K
205
D
MG
2
3
MG
MG
202
A
MG
1
3
MG
MG
201
B
WAT
8
5
HOH
HOH
207
C
WAT
10
5
HOH
HOH
208
C
WAT
11
5
HOH
HOH
209
C
WAT
18
5
HOH
HOH
210
C
WAT
22
5
HOH
HOH
211
C
WAT
25
5
HOH
HOH
212
C
WAT
26
5
HOH
HOH
213
C
WAT
32
5
HOH
HOH
214
C
WAT
35
5
HOH
HOH
215
C
WAT
37
5
HOH
HOH
216
C
WAT
38
5
HOH
HOH
217
C
WAT
39
5
HOH
HOH
218
C
WAT
47
5
HOH
HOH
219
C
WAT
49
5
HOH
HOH
220
C
WAT
50
5
HOH
HOH
221
C
WAT
51
5
HOH
HOH
222
C
WAT
53
5
HOH
HOH
223
C
WAT
60
5
HOH
HOH
224
C
WAT
66
5
HOH
HOH
225
C
WAT
70
5
HOH
HOH
226
C
WAT
74
5
HOH
HOH
227
C
WAT
76
5
HOH
HOH
228
C
WAT
79
5
HOH
HOH
229
C
WAT
80
5
HOH
HOH
230
C
WAT
92
5
HOH
HOH
231
C
WAT
97
5
HOH
HOH
232
C
WAT
98
5
HOH
HOH
233
C
WAT
108
5
HOH
HOH
234
C
WAT
110
5
HOH
HOH
235
C
WAT
112
5
HOH
HOH
236
C
WAT
115
5
HOH
HOH
237
C
WAT
118
5
HOH
HOH
238
C
WAT
120
5
HOH
HOH
239
C
WAT
126
5
HOH
HOH
240
C
WAT
132
5
HOH
HOH
241
C
WAT
138
5
HOH
HOH
242
C
WAT
139
5
HOH
HOH
243
C
WAT
141
5
HOH
HOH
244
C
WAT
142
5
HOH
HOH
245
C
WAT
144
5
HOH
HOH
246
C
WAT
153
5
HOH
HOH
247
C
WAT
157
5
HOH
HOH
248
C
WAT
159
5
HOH
HOH
249
C
WAT
169
5
HOH
HOH
250
C
WAT
171
5
HOH
HOH
251
C
WAT
172
5
HOH
HOH
252
C
WAT
176
5
HOH
HOH
253
C
WAT
180
5
HOH
HOH
254
C
WAT
184
5
HOH
HOH
255
C
WAT
186
5
HOH
HOH
256
C
WAT
4
5
HOH
HOH
206
D
WAT
9
5
HOH
HOH
207
D
WAT
13
5
HOH
HOH
208
D
WAT
15
5
HOH
HOH
209
D
WAT
20
5
HOH
HOH
210
D
WAT
27
5
HOH
HOH
211
D
WAT
36
5
HOH
HOH
212
D
WAT
41
5
HOH
HOH
213
D
WAT
42
5
HOH
HOH
214
D
WAT
43
5
HOH
HOH
215
D
WAT
44
5
HOH
HOH
216
D
WAT
52
5
HOH
HOH
217
D
WAT
54
5
HOH
HOH
218
D
WAT
55
5
HOH
HOH
219
D
WAT
67
5
HOH
HOH
220
D
WAT
85
5
HOH
HOH
221
D
WAT
89
5
HOH
HOH
222
D
WAT
90
5
HOH
HOH
223
D
WAT
94
5
HOH
HOH
224
D
WAT
95
5
HOH
HOH
225
D
WAT
99
5
HOH
HOH
226
D
WAT
107
5
HOH
HOH
227
D
WAT
111
5
HOH
HOH
228
D
WAT
116
5
HOH
HOH
229
D
WAT
124
5
HOH
HOH
230
D
WAT
127
5
HOH
HOH
231
D
WAT
134
5
HOH
HOH
232
D
WAT
137
5
HOH
HOH
233
D
WAT
143
5
HOH
HOH
234
D
WAT
148
5
HOH
HOH
235
D
WAT
151
5
HOH
HOH
236
D
WAT
154
5
HOH
HOH
237
D
WAT
160
5
HOH
HOH
238
D
WAT
164
5
HOH
HOH
239
D
WAT
165
5
HOH
HOH
240
D
WAT
173
5
HOH
HOH
241
D
WAT
181
5
HOH
HOH
242
D
WAT
183
5
HOH
HOH
243
D
WAT
1
5
HOH
HOH
203
A
WAT
3
5
HOH
HOH
204
A
WAT
5
5
HOH
HOH
205
A
WAT
6
5
HOH
HOH
206
A
WAT
12
5
HOH
HOH
207
A
WAT
16
5
HOH
HOH
208
A
WAT
19
5
HOH
HOH
209
A
WAT
23
5
HOH
HOH
210
A
WAT
29
5
HOH
HOH
211
A
WAT
31
5
HOH
HOH
212
A
WAT
46
5
HOH
HOH
213
A
WAT
57
5
HOH
HOH
214
A
WAT
64
5
HOH
HOH
215
A
WAT
65
5
HOH
HOH
216
A
WAT
68
5
HOH
HOH
217
A
WAT
72
5
HOH
HOH
218
A
WAT
77
5
HOH
HOH
219
A
WAT
81
5
HOH
HOH
220
A
WAT
82
5
HOH
HOH
221
A
WAT
83
5
HOH
HOH
222
A
WAT
84
5
HOH
HOH
223
A
WAT
87
5
HOH
HOH
224
A
WAT
88
5
HOH
HOH
225
A
WAT
100
5
HOH
HOH
226
A
WAT
104
5
HOH
HOH
227
A
WAT
105
5
HOH
HOH
228
A
WAT
106
5
HOH
HOH
229
A
WAT
117
5
HOH
HOH
230
A
WAT
121
5
HOH
HOH
231
A
WAT
123
5
HOH
HOH
232
A
WAT
129
5
HOH
HOH
233
A
WAT
133
5
HOH
HOH
234
A
WAT
135
5
HOH
HOH
235
A
WAT
140
5
HOH
HOH
236
A
WAT
145
5
HOH
HOH
237
A
WAT
146
5
HOH
HOH
238
A
WAT
156
5
HOH
HOH
239
A
WAT
158
5
HOH
HOH
240
A
WAT
163
5
HOH
HOH
241
A
WAT
166
5
HOH
HOH
242
A
WAT
167
5
HOH
HOH
243
A
WAT
168
5
HOH
HOH
244
A
WAT
170
5
HOH
HOH
245
A
WAT
175
5
HOH
HOH
246
A
WAT
185
5
HOH
HOH
247
A
WAT
187
5
HOH
HOH
248
A
WAT
2
5
HOH
HOH
202
B
WAT
7
5
HOH
HOH
203
B
WAT
14
5
HOH
HOH
204
B
WAT
17
5
HOH
HOH
205
B
WAT
21
5
HOH
HOH
206
B
WAT
24
5
HOH
HOH
207
B
WAT
28
5
HOH
HOH
208
B
WAT
30
5
HOH
HOH
209
B
WAT
33
5
HOH
HOH
210
B
WAT
34
5
HOH
HOH
211
B
WAT
40
5
HOH
HOH
212
B
WAT
45
5
HOH
HOH
213
B
WAT
48
5
HOH
HOH
214
B
WAT
56
5
HOH
HOH
215
B
WAT
58
5
HOH
HOH
216
B
WAT
59
5
HOH
HOH
217
B
WAT
61
5
HOH
HOH
218
B
WAT
62
5
HOH
HOH
219
B
WAT
63
5
HOH
HOH
220
B
WAT
69
5
HOH
HOH
221
B
WAT
71
5
HOH
HOH
222
B
WAT
73
5
HOH
HOH
223
B
WAT
75
5
HOH
HOH
224
B
WAT
78
5
HOH
HOH
225
B
WAT
86
5
HOH
HOH
226
B
WAT
91
5
HOH
HOH
227
B
WAT
93
5
HOH
HOH
228
B
WAT
96
5
HOH
HOH
229
B
WAT
101
5
HOH
HOH
230
B
WAT
102
5
HOH
HOH
231
B
WAT
103
5
HOH
HOH
232
B
WAT
109
5
HOH
HOH
233
B
WAT
113
5
HOH
HOH
234
B
WAT
114
5
HOH
HOH
235
B
WAT
119
5
HOH
HOH
236
B
WAT
122
5
HOH
HOH
237
B
WAT
125
5
HOH
HOH
238
B
WAT
128
5
HOH
HOH
239
B
WAT
130
5
HOH
HOH
240
B
WAT
131
5
HOH
HOH
241
B
WAT
136
5
HOH
HOH
242
B
WAT
147
5
HOH
HOH
243
B
WAT
149
5
HOH
HOH
244
B
WAT
257
5
HOH
HOH
245
B
WAT
152
5
HOH
HOH
246
B
WAT
155
5
HOH
HOH
247
B
WAT
161
5
HOH
HOH
248
B
WAT
162
5
HOH
HOH
249
B
WAT
174
5
HOH
HOH
250
B
WAT
177
5
HOH
HOH
251
B
WAT
178
5
HOH
HOH
252
B
WAT
179
5
HOH
HOH
253
B
WAT
182
5
HOH
HOH
254
B
G
26
n
1
G
26
C
G
27
n
2
G
27
C
C
28
n
3
C
28
C
A
29
n
4
A
29
C
C
30
n
5
C
30
C
C
31
n
6
C
31
C
U
32
n
7
U
32
C
G
33
n
8
G
33
C
A
34
n
9
A
34
C
C
35
n
10
C
35
C
C
36
n
11
C
36
C
C
37
n
12
C
37
C
C
38
n
13
C
38
C
A
39
n
14
A
39
C
U
40
n
15
U
40
C
G
41
n
16
G
41
C
C
42
n
17
C
42
C
C
43
n
18
C
43
C
G
44
n
19
G
44
C
A
45
n
20
A
45
C
A
46
n
21
A
46
C
C
47
n
22
C
47
C
U
48
n
23
U
48
C
C
49
n
24
C
49
C
A
50
n
25
A
50
C
G
51
n
26
G
51
C
A
52
n
27
A
52
C
A
53
n
28
A
53
C
G
54
n
29
G
54
C
U
55
n
30
U
55
C
G
56
n
31
G
56
C
C
57
n
32
C
57
C
C
58
n
33
C
58
C
C
59
n
34
C
59
C
G
26
n
1
G
26
D
G
27
n
2
G
27
D
C
28
n
3
C
28
D
A
29
n
4
A
29
D
C
30
n
5
C
30
D
C
31
n
6
C
31
D
U
32
n
7
U
32
D
G
33
n
8
G
33
D
A
34
n
9
A
34
D
C
35
n
10
C
35
D
C
36
n
11
C
36
D
C
37
n
12
C
37
D
C
38
n
13
C
38
D
A
39
n
14
A
39
D
U
40
n
15
U
40
D
G
41
n
16
G
41
D
C
42
n
17
C
42
D
C
43
n
18
C
43
D
G
44
n
19
G
44
D
A
45
n
20
A
45
D
A
46
n
21
A
46
D
C
47
n
22
C
47
D
U
48
n
23
U
48
D
C
49
n
24
C
49
D
A
50
n
25
A
50
D
G
51
n
26
G
51
D
A
52
n
27
A
52
D
A
53
n
28
A
53
D
G
54
n
29
G
54
D
U
55
n
30
U
55
D
G
56
n
31
G
56
D
C
57
n
32
C
57
D
C
58
n
33
C
58
D
C
59
n
34
C
59
D
n
1
1
A
n
2
2
A
LEU
3
n
3
LEU
3
A
ASP
4
n
4
ASP
4
A
VAL
5
n
5
VAL
5
A
ALA
6
n
6
ALA
6
A
LEU
7
n
7
LEU
7
A
LYS
8
n
8
LYS
8
A
ARG
9
n
9
ARG
9
A
LYS
10
n
10
LYS
10
A
TYR
11
n
11
TYR
11
A
TYR
12
n
12
TYR
12
A
GLU
13
n
13
GLU
13
A
GLU
14
n
14
GLU
14
A
VAL
15
n
15
VAL
15
A
ARG
16
n
16
ARG
16
A
PRO
17
n
17
PRO
17
A
GLU
18
n
18
GLU
18
A
LEU
19
n
19
LEU
19
A
ILE
20
n
20
ILE
20
A
ARG
21
n
21
ARG
21
A
ARG
22
n
22
ARG
22
A
PHE
23
n
23
PHE
23
A
GLY
24
n
24
GLY
24
A
TYR
25
n
25
TYR
25
A
GLN
26
n
26
GLN
26
A
ASN
27
n
27
ASN
27
A
VAL
28
n
28
VAL
28
A
TRP
29
n
29
TRP
29
A
GLU
30
n
30
GLU
30
A
VAL
31
n
31
VAL
31
A
PRO
32
n
32
PRO
32
A
ARG
33
n
33
ARG
33
A
LEU
34
n
34
LEU
34
A
GLU
35
n
35
GLU
35
A
LYS
36
n
36
LYS
36
A
VAL
37
n
37
VAL
37
A
VAL
38
n
38
VAL
38
A
ILE
39
n
39
ILE
39
A
ASN
40
n
40
ASN
40
A
GLN
41
n
41
GLN
41
A
GLY
42
n
42
GLY
42
A
LEU
43
n
43
LEU
43
A
GLY
44
n
44
GLY
44
A
GLU
45
n
45
GLU
45
A
ALA
46
n
46
ALA
46
A
LYS
47
n
47
LYS
47
A
GLU
48
n
48
GLU
48
A
ASP
49
n
49
ASP
49
A
ALA
50
n
50
ALA
50
A
ARG
51
n
51
ARG
51
A
ILE
52
n
52
ILE
52
A
LEU
53
n
53
LEU
53
A
GLU
54
n
54
GLU
54
A
LYS
55
n
55
LYS
55
A
ALA
56
n
56
ALA
56
A
ALA
57
n
57
ALA
57
A
GLN
58
n
58
GLN
58
A
GLU
59
n
59
GLU
59
A
LEU
60
n
60
LEU
60
A
ALA
61
n
61
ALA
61
A
LEU
62
n
62
LEU
62
A
ILE
63
n
63
ILE
63
A
THR
64
n
64
THR
64
A
GLY
65
n
65
GLY
65
A
GLN
66
n
66
GLN
66
A
LYS
67
n
67
LYS
67
A
PRO
68
n
68
PRO
68
A
ALA
69
n
69
ALA
69
A
VAL
70
n
70
VAL
70
A
THR
71
n
71
THR
71
A
ARG
72
n
72
ARG
72
A
ALA
73
n
73
ALA
73
A
LYS
74
n
74
LYS
74
A
LYS
75
n
75
LYS
75
A
SER
76
n
76
SER
76
A
ILE
77
n
77
ILE
77
A
SER
78
n
78
SER
78
A
ASN
79
n
79
ASN
79
A
PHE
80
n
80
PHE
80
A
LYS
81
n
81
LYS
81
A
LEU
82
n
82
LEU
82
A
ARG
83
n
83
ARG
83
A
LYS
84
n
84
LYS
84
A
GLY
85
n
85
GLY
85
A
MET
86
n
86
MET
86
A
PRO
87
n
87
PRO
87
A
ILE
88
n
88
ILE
88
A
GLY
89
n
89
GLY
89
A
LEU
90
n
90
LEU
90
A
ARG
91
n
91
ARG
91
A
VAL
92
n
92
VAL
92
A
THR
93
n
93
THR
93
A
LEU
94
n
94
LEU
94
A
ARG
95
n
95
ARG
95
A
ARG
96
n
96
ARG
96
A
ASP
97
n
97
ASP
97
A
ARG
98
n
98
ARG
98
A
MSE
99
n
99
MSE
99
A
TRP
100
n
100
TRP
100
A
ILE
101
n
101
ILE
101
A
PHE
102
n
102
PHE
102
A
LEU
103
n
103
LEU
103
A
GLU
104
n
104
GLU
104
A
LYS
105
n
105
LYS
105
A
LEU
106
n
106
LEU
106
A
LEU
107
n
107
LEU
107
A
ASN
108
n
108
ASN
108
A
VAL
109
n
109
VAL
109
A
ALA
110
n
110
ALA
110
A
LEU
111
n
111
LEU
111
A
PRO
112
n
112
PRO
112
A
ARG
113
n
113
ARG
113
A
ILE
114
n
114
ILE
114
A
ARG
115
n
115
ARG
115
A
ASP
116
n
116
ASP
116
A
PHE
117
n
117
PHE
117
A
ARG
118
n
118
ARG
118
A
GLY
119
n
119
GLY
119
A
LEU
120
n
120
LEU
120
A
ASN
121
n
121
ASN
121
A
PRO
122
n
122
PRO
122
A
ASN
123
n
123
ASN
123
A
SER
124
n
124
SER
124
A
PHE
125
n
125
PHE
125
A
ASP
126
n
126
ASP
126
A
GLY
127
n
127
GLY
127
A
ARG
128
n
128
ARG
128
A
GLY
129
n
129
GLY
129
A
ASN
130
n
130
ASN
130
A
TYR
131
n
131
TYR
131
A
ASN
132
n
132
ASN
132
A
LEU
133
n
133
LEU
133
A
GLY
134
n
134
GLY
134
A
LEU
135
n
135
LEU
135
A
ARG
136
n
136
ARG
136
A
GLU
137
n
137
GLU
137
A
GLN
138
n
138
GLN
138
A
LEU
139
n
139
LEU
139
A
ILE
140
n
140
ILE
140
A
PHE
141
n
141
PHE
141
A
PRO
142
n
142
PRO
142
A
GLU
143
n
143
GLU
143
A
ILE
144
n
144
ILE
144
A
THR
145
n
145
THR
145
A
TYR
146
n
146
TYR
146
A
ASP
147
n
147
ASP
147
A
MET
148
n
148
MET
148
A
VAL
149
n
149
VAL
149
A
ASP
150
n
150
ASP
150
A
ALA
151
n
151
ALA
151
A
LEU
152
n
152
LEU
152
A
ARG
153
n
153
ARG
153
A
GLY
154
n
154
GLY
154
A
MSE
155
n
155
MSE
155
A
ASP
156
n
156
ASP
156
A
ILE
157
n
157
ILE
157
A
ALA
158
n
158
ALA
158
A
VAL
159
n
159
VAL
159
A
VAL
160
n
160
VAL
160
A
THR
161
n
161
THR
161
A
THR
162
n
162
THR
162
A
ALA
163
n
163
ALA
163
A
GLU
164
n
164
GLU
164
A
THR
165
n
165
THR
165
A
ASP
166
n
166
ASP
166
A
GLU
167
n
167
GLU
167
A
GLU
168
n
168
GLU
168
A
ALA
169
n
169
ALA
169
A
ARG
170
n
170
ARG
170
A
ALA
171
n
171
ALA
171
A
LEU
172
n
172
LEU
172
A
LEU
173
n
173
LEU
173
A
GLU
174
n
174
GLU
174
A
LEU
175
n
175
LEU
175
A
LEU
176
n
176
LEU
176
A
GLY
177
n
177
GLY
177
A
PHE
178
n
178
PHE
178
A
PRO
179
n
179
PRO
179
A
PHE
180
n
180
PHE
180
A
ARG
181
n
181
ARG
181
A
LYS
182
n
182
LYS
182
A
n
1
1
B
n
2
2
B
n
3
3
B
ASP
4
n
4
ASP
4
B
VAL
5
n
5
VAL
5
B
ALA
6
n
6
ALA
6
B
LEU
7
n
7
LEU
7
B
LYS
8
n
8
LYS
8
B
ARG
9
n
9
ARG
9
B
LYS
10
n
10
LYS
10
B
TYR
11
n
11
TYR
11
B
TYR
12
n
12
TYR
12
B
GLU
13
n
13
GLU
13
B
GLU
14
n
14
GLU
14
B
VAL
15
n
15
VAL
15
B
ARG
16
n
16
ARG
16
B
PRO
17
n
17
PRO
17
B
GLU
18
n
18
GLU
18
B
LEU
19
n
19
LEU
19
B
ILE
20
n
20
ILE
20
B
ARG
21
n
21
ARG
21
B
ARG
22
n
22
ARG
22
B
PHE
23
n
23
PHE
23
B
GLY
24
n
24
GLY
24
B
TYR
25
n
25
TYR
25
B
GLN
26
n
26
GLN
26
B
ASN
27
n
27
ASN
27
B
VAL
28
n
28
VAL
28
B
TRP
29
n
29
TRP
29
B
GLU
30
n
30
GLU
30
B
VAL
31
n
31
VAL
31
B
PRO
32
n
32
PRO
32
B
ARG
33
n
33
ARG
33
B
LEU
34
n
34
LEU
34
B
GLU
35
n
35
GLU
35
B
LYS
36
n
36
LYS
36
B
VAL
37
n
37
VAL
37
B
VAL
38
n
38
VAL
38
B
ILE
39
n
39
ILE
39
B
ASN
40
n
40
ASN
40
B
GLN
41
n
41
GLN
41
B
GLY
42
n
42
GLY
42
B
LEU
43
n
43
LEU
43
B
GLY
44
n
44
GLY
44
B
GLU
45
n
45
GLU
45
B
ALA
46
n
46
ALA
46
B
LYS
47
n
47
LYS
47
B
GLU
48
n
48
GLU
48
B
ASP
49
n
49
ASP
49
B
ALA
50
n
50
ALA
50
B
ARG
51
n
51
ARG
51
B
ILE
52
n
52
ILE
52
B
LEU
53
n
53
LEU
53
B
GLU
54
n
54
GLU
54
B
LYS
55
n
55
LYS
55
B
ALA
56
n
56
ALA
56
B
ALA
57
n
57
ALA
57
B
GLN
58
n
58
GLN
58
B
GLU
59
n
59
GLU
59
B
LEU
60
n
60
LEU
60
B
ALA
61
n
61
ALA
61
B
LEU
62
n
62
LEU
62
B
ILE
63
n
63
ILE
63
B
THR
64
n
64
THR
64
B
GLY
65
n
65
GLY
65
B
GLN
66
n
66
GLN
66
B
LYS
67
n
67
LYS
67
B
PRO
68
n
68
PRO
68
B
ALA
69
n
69
ALA
69
B
VAL
70
n
70
VAL
70
B
THR
71
n
71
THR
71
B
ARG
72
n
72
ARG
72
B
ALA
73
n
73
ALA
73
B
LYS
74
n
74
LYS
74
B
LYS
75
n
75
LYS
75
B
SER
76
n
76
SER
76
B
ILE
77
n
77
ILE
77
B
SER
78
n
78
SER
78
B
ASN
79
n
79
ASN
79
B
PHE
80
n
80
PHE
80
B
LYS
81
n
81
LYS
81
B
LEU
82
n
82
LEU
82
B
ARG
83
n
83
ARG
83
B
LYS
84
n
84
LYS
84
B
GLY
85
n
85
GLY
85
B
MET
86
n
86
MET
86
B
PRO
87
n
87
PRO
87
B
ILE
88
n
88
ILE
88
B
GLY
89
n
89
GLY
89
B
LEU
90
n
90
LEU
90
B
ARG
91
n
91
ARG
91
B
VAL
92
n
92
VAL
92
B
THR
93
n
93
THR
93
B
LEU
94
n
94
LEU
94
B
ARG
95
n
95
ARG
95
B
ARG
96
n
96
ARG
96
B
ASP
97
n
97
ASP
97
B
ARG
98
n
98
ARG
98
B
MSE
99
n
99
MSE
99
B
TRP
100
n
100
TRP
100
B
ILE
101
n
101
ILE
101
B
PHE
102
n
102
PHE
102
B
LEU
103
n
103
LEU
103
B
GLU
104
n
104
GLU
104
B
LYS
105
n
105
LYS
105
B
LEU
106
n
106
LEU
106
B
LEU
107
n
107
LEU
107
B
ASN
108
n
108
ASN
108
B
VAL
109
n
109
VAL
109
B
ALA
110
n
110
ALA
110
B
LEU
111
n
111
LEU
111
B
PRO
112
n
112
PRO
112
B
ARG
113
n
113
ARG
113
B
ILE
114
n
114
ILE
114
B
ARG
115
n
115
ARG
115
B
ASP
116
n
116
ASP
116
B
PHE
117
n
117
PHE
117
B
ARG
118
n
118
ARG
118
B
GLY
119
n
119
GLY
119
B
LEU
120
n
120
LEU
120
B
ASN
121
n
121
ASN
121
B
PRO
122
n
122
PRO
122
B
ASN
123
n
123
ASN
123
B
SER
124
n
124
SER
124
B
PHE
125
n
125
PHE
125
B
ASP
126
n
126
ASP
126
B
GLY
127
n
127
GLY
127
B
ARG
128
n
128
ARG
128
B
GLY
129
n
129
GLY
129
B
ASN
130
n
130
ASN
130
B
TYR
131
n
131
TYR
131
B
ASN
132
n
132
ASN
132
B
LEU
133
n
133
LEU
133
B
GLY
134
n
134
GLY
134
B
LEU
135
n
135
LEU
135
B
ARG
136
n
136
ARG
136
B
GLU
137
n
137
GLU
137
B
GLN
138
n
138
GLN
138
B
LEU
139
n
139
LEU
139
B
ILE
140
n
140
ILE
140
B
PHE
141
n
141
PHE
141
B
PRO
142
n
142
PRO
142
B
GLU
143
n
143
GLU
143
B
ILE
144
n
144
ILE
144
B
THR
145
n
145
THR
145
B
TYR
146
n
146
TYR
146
B
ASP
147
n
147
ASP
147
B
MET
148
n
148
MET
148
B
VAL
149
n
149
VAL
149
B
ASP
150
n
150
ASP
150
B
ALA
151
n
151
ALA
151
B
LEU
152
n
152
LEU
152
B
ARG
153
n
153
ARG
153
B
GLY
154
n
154
GLY
154
B
MSE
155
n
155
MSE
155
B
ASP
156
n
156
ASP
156
B
ILE
157
n
157
ILE
157
B
ALA
158
n
158
ALA
158
B
VAL
159
n
159
VAL
159
B
VAL
160
n
160
VAL
160
B
THR
161
n
161
THR
161
B
THR
162
n
162
THR
162
B
ALA
163
n
163
ALA
163
B
GLU
164
n
164
GLU
164
B
THR
165
n
165
THR
165
B
ASP
166
n
166
ASP
166
B
GLU
167
n
167
GLU
167
B
GLU
168
n
168
GLU
168
B
ALA
169
n
169
ALA
169
B
ARG
170
n
170
ARG
170
B
ALA
171
n
171
ALA
171
B
LEU
172
n
172
LEU
172
B
LEU
173
n
173
LEU
173
B
GLU
174
n
174
GLU
174
B
LEU
175
n
175
LEU
175
B
LEU
176
n
176
LEU
176
B
GLY
177
n
177
GLY
177
B
PHE
178
n
178
PHE
178
B
PRO
179
n
179
PRO
179
B
PHE
180
n
180
PHE
180
B
ARG
181
n
181
ARG
181
B
LYS
182
n
182
LYS
182
B
author_defined_assembly
4
tetrameric
A
THR
161
C
O
THR
161
1_555
A
MG
202
I
MG
MG
1_555
A
ALA
163
C
O
ALA
163
1_555
100.6
A
THR
161
C
O
THR
161
1_555
A
MG
202
I
MG
MG
1_555
A
ASN
130
C
OD1
ASN
130
1_555
78.0
A
ALA
163
C
O
ALA
163
1_555
A
MG
202
I
MG
MG
1_555
A
ASN
130
C
OD1
ASN
130
1_555
142.2
A
THR
161
C
O
THR
161
1_555
A
MG
202
I
MG
MG
1_555
C
HOH
211
K
O
HOH
1_555
110.9
A
ALA
163
C
O
ALA
163
1_555
A
MG
202
I
MG
MG
1_555
C
HOH
211
K
O
HOH
1_555
128.8
A
ASN
130
C
OD1
ASN
130
1_555
A
MG
202
I
MG
MG
1_555
C
HOH
211
K
O
HOH
1_555
84.9
A
THR
161
C
O
THR
161
1_555
A
MG
202
I
MG
MG
1_555
A
ARG
128
C
O
ARG
128
1_555
167.5
A
ALA
163
C
O
ALA
163
1_555
A
MG
202
I
MG
MG
1_555
A
ARG
128
C
O
ARG
128
1_555
80.1
A
ASN
130
C
OD1
ASN
130
1_555
A
MG
202
I
MG
MG
1_555
A
ARG
128
C
O
ARG
128
1_555
93.8
C
HOH
211
K
O
HOH
1_555
A
MG
202
I
MG
MG
1_555
A
ARG
128
C
O
ARG
128
1_555
77.3
B
ASN
130
D
OD1
ASN
130
1_555
B
MG
201
J
MG
MG
1_555
B
THR
161
D
O
THR
161
1_555
79.7
B
ASN
130
D
OD1
ASN
130
1_555
B
MG
201
J
MG
MG
1_555
B
ALA
163
D
O
ALA
163
1_555
132.7
B
THR
161
D
O
THR
161
1_555
B
MG
201
J
MG
MG
1_555
B
ALA
163
D
O
ALA
163
1_555
101.3
B
ASN
130
D
OD1
ASN
130
1_555
B
MG
201
J
MG
MG
1_555
B
HOH
219
N
O
HOH
1_555
81.1
B
THR
161
D
O
THR
161
1_555
B
MG
201
J
MG
MG
1_555
B
HOH
219
N
O
HOH
1_555
108.7
B
ALA
163
D
O
ALA
163
1_555
B
MG
201
J
MG
MG
1_555
B
HOH
219
N
O
HOH
1_555
138.8
B
ASN
130
D
OD1
ASN
130
1_555
B
MG
201
J
MG
MG
1_555
B
ARG
128
D
O
ARG
128
1_555
101.3
B
THR
161
D
O
THR
161
1_555
B
MG
201
J
MG
MG
1_555
B
ARG
128
D
O
ARG
128
1_555
165.3
B
ALA
163
D
O
ALA
163
1_555
B
MG
201
J
MG
MG
1_555
B
ARG
128
D
O
ARG
128
1_555
67.1
B
HOH
219
N
O
HOH
1_555
B
MG
201
J
MG
MG
1_555
B
ARG
128
D
O
ARG
128
1_555
85.9
C
U
48
A
O4'
U
23
1_555
C
MG
203
E
MG
MG
1_555
C
C
47
A
O2
C
22
1_555
93.4
C
U
48
A
O4'
U
23
1_555
C
MG
203
E
MG
MG
1_555
C
C
38
A
O2'
C
13
1_555
104.5
C
C
47
A
O2
C
22
1_555
C
MG
203
E
MG
MG
1_555
C
C
38
A
O2'
C
13
1_555
146.0
D
A
39
B
O4'
A
14
1_555
D
MG
204
G
MG
MG
1_555
D
C
47
B
O2
C
22
1_555
73.5
D
A
39
B
O4'
A
14
1_555
D
MG
204
G
MG
MG
1_555
D
U
48
B
O4'
U
23
1_555
137.3
D
C
47
B
O2
C
22
1_555
D
MG
204
G
MG
MG
1_555
D
U
48
B
O4'
U
23
1_555
83.9
D
A
39
B
O4'
A
14
1_555
D
MG
204
G
MG
MG
1_555
D
C
38
B
O2'
C
13
1_555
78.6
D
C
47
B
O2
C
22
1_555
D
MG
204
G
MG
MG
1_555
D
C
38
B
O2'
C
13
1_555
143.4
D
U
48
B
O4'
U
23
1_555
D
MG
204
G
MG
MG
1_555
D
C
38
B
O2'
C
13
1_555
101.7
D
HOH
221
L
O
HOH
1_555
D
K
205
H
K
K
1_555
D
U
32
B
O4
U
7
1_555
171.4
A
MSE
99
SELENOMETHIONINE
C
MSE
99
MET
A
MSE
155
SELENOMETHIONINE
C
MSE
155
MET
B
MSE
99
SELENOMETHIONINE
D
MSE
99
MET
B
MSE
155
SELENOMETHIONINE
D
MSE
155
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
69
C
N
ALA
69
A
O
ARG
91
C
O
ARG
91
A
O
LEU
94
C
O
LEU
94
A
N
VAL
37
C
N
VAL
37
A
N
ASN
40
C
N
ASN
40
A
O
ASP
156
C
O
ASP
156
A
O
ILE
157
C
O
ILE
157
A
N
LEU
133
C
N
LEU
133
A
N
LEU
139
C
N
LEU
139
A
O
TYR
146
C
O
TYR
146
B
N
THR
71
D
N
THR
71
B
O
ILE
88
D
O
ILE
88
B
O
LEU
94
D
O
LEU
94
B
N
VAL
37
D
N
VAL
37
B
N
ASN
40
D
N
ASN
40
B
O
ASP
156
D
O
ASP
156
B
O
ILE
157
D
O
ILE
157
B
N
LEU
133
D
N
LEU
133
1
A
MET
1
C
MET
1
1
Y
1
A
PRO
2
C
PRO
2
1
Y
1
B
MET
1
D
MET
1
1
Y
1
B
PRO
2
D
PRO
2
1
Y
1
B
LEU
3
D
LEU
3
1
Y
1
A
GLU
14
-109.05
-62.07
1
A
GLU
45
51.94
13.82
1
A
LYS
74
-70.17
-106.35
1
A
SER
78
-25.36
118.16
1
A
ASN
79
-101.46
78.62
1
A
LYS
81
158.29
-59.62
1
A
ARG
83
-133.15
-75.31
1
A
MET
86
-163.57
-58.25
1
A
ARG
96
51.38
-139.26
1
A
ARG
113
-70.84
35.05
1
A
GLU
143
-62.95
-92.37
1
A
ILE
144
-118.96
-166.79
1
A
ALA
151
-71.21
-73.25
1
A
ARG
153
-84.51
-154.73
1
B
ASP
49
177.80
170.79
1
B
ALA
50
-147.85
43.84
1
B
ARG
51
-147.59
-34.75
1
B
LYS
74
-36.51
134.48
1
B
SER
76
-155.02
64.93
1
B
SER
78
-77.92
-109.11
1
B
LYS
81
-52.28
101.16
1
B
LEU
82
-142.39
54.27
1
B
ARG
83
68.81
172.18
1
B
ARG
96
50.40
-147.91
1
B
VAL
109
-142.39
-56.14
1
B
PHE
117
-39.26
128.06
1
B
SER
124
-61.13
28.03
1
B
ARG
136
-53.64
-83.36
1
B
LEU
139
100.99
14.71
1
B
ILE
144
-53.32
103.63
1
B
MET
148
161.89
24.00
1
B
ARG
153
-89.85
-130.52
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA_REP.PARAM
DNA-RNA.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
39.4
7.03
0.00
3.40
-3.38
0.00
-3.65
0.288
0.006
0.21
0.21
2.50
14.91
2146
21650
21043
9.9
95.3
RANDOM
1
RESTRAINED
THROUGHOUT
2
MAD
Engh & Huber
FLAT MODEL
52.9597
0.324816
0.44
0.44
2.50
14.91
187
4553
6
1434
2926
0.007
1.3
20.7
1.39
1.70
1.50
3.10
2.00
1.90
2.00
3.13
2.50
0.365
0.020
0.309
2.66
339
2883
6
10.5
85.3
39.3
2.5
15
1MJI
22650
22650
0
0
0.067
1
13.2
3
99.1
0.186
2.5
2.59
3.3
1908
3
84.1
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
50S ribosomal protein L5/RNA Complex
DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE BACTERIAL RIBOSOMAL PROTEIN L5/5S RRNA COMPLEX
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
3
N
N
4
N
N
3
N
N
3
N
N
5
N
N
5
N
N
5
N
N
5
N
N
A
VAL
5
C
VAL
5
HELX_P
A
GLU
14
C
GLU
14
1
1
10
A
GLU
14
C
GLU
14
HELX_P
A
PHE
23
C
PHE
23
1
2
10
A
ASN
27
C
ASN
27
HELX_P
A
VAL
31
C
VAL
31
5
3
5
A
ASP
49
C
ASP
49
HELX_P
A
GLY
65
C
GLY
65
1
4
17
A
ARG
95
C
ARG
95
HELX_P
A
VAL
109
C
VAL
109
1
5
15
A
THR
165
C
THR
165
HELX_P
A
GLY
177
C
GLY
177
1
6
13
B
VAL
5
D
VAL
5
HELX_P
B
GLU
14
D
GLU
14
1
7
10
B
GLU
14
D
GLU
14
HELX_P
B
GLY
24
D
GLY
24
1
8
11
B
ARG
51
D
ARG
51
HELX_P
B
GLY
65
D
GLY
65
1
9
15
B
ARG
95
D
ARG
95
HELX_P
B
VAL
109
D
VAL
109
1
10
15
B
THR
165
D
THR
165
HELX_P
B
GLY
177
D
GLY
177
1
11
13
covale
1.330
A
ARG
98
C
C
ARG
98
1_555
A
MSE
99
C
N
MSE
99
1_555
covale
1.331
A
MSE
99
C
C
MSE
99
1_555
A
TRP
100
C
N
TRP
100
1_555
covale
1.333
A
GLY
154
C
C
GLY
154
1_555
A
MSE
155
C
N
MSE
155
1_555
covale
1.320
A
MSE
155
C
C
MSE
155
1_555
A
ASP
156
C
N
ASP
156
1_555
metalc
2.623
A
MG
202
I
MG
MG
1_555
A
THR
161
C
O
THR
161
1_555
metalc
2.813
A
MG
202
I
MG
MG
1_555
A
ALA
163
C
O
ALA
163
1_555
metalc
2.940
A
MG
202
I
MG
MG
1_555
A
ASN
130
C
OD1
ASN
130
1_555
metalc
3.044
A
MG
202
I
MG
MG
1_555
C
HOH
211
K
O
HOH
1_555
metalc
2.744
A
MG
202
I
MG
MG
1_555
A
ARG
128
C
O
ARG
128
1_555
covale
1.328
B
ARG
98
D
C
ARG
98
1_555
B
MSE
99
D
N
MSE
99
1_555
covale
1.330
B
MSE
99
D
C
MSE
99
1_555
B
TRP
100
D
N
TRP
100
1_555
covale
1.335
B
GLY
154
D
C
GLY
154
1_555
B
MSE
155
D
N
MSE
155
1_555
covale
1.341
B
MSE
155
D
C
MSE
155
1_555
B
ASP
156
D
N
ASP
156
1_555
metalc
2.958
B
MG
201
J
MG
MG
1_555
B
ASN
130
D
OD1
ASN
130
1_555
metalc
2.535
B
MG
201
J
MG
MG
1_555
B
THR
161
D
O
THR
161
1_555
metalc
2.715
B
MG
201
J
MG
MG
1_555
B
ALA
163
D
O
ALA
163
1_555
metalc
2.426
B
MG
201
J
MG
MG
1_555
B
HOH
219
N
O
HOH
1_555
metalc
2.674
B
MG
201
J
MG
MG
1_555
B
ARG
128
D
O
ARG
128
1_555
metalc
2.779
C
MG
203
E
MG
MG
1_555
C
U
48
A
O4'
U
23
1_555
metalc
2.410
C
MG
203
E
MG
MG
1_555
C
C
47
A
O2
C
22
1_555
metalc
2.920
C
MG
203
E
MG
MG
1_555
C
C
38
A
O2'
C
13
1_555
metalc
3.342
C
K
206
F
K
K
1_555
C
HOH
221
K
O
HOH
1_555
metalc
3.095
D
MG
204
G
MG
MG
1_555
D
A
39
B
O4'
A
14
1_555
metalc
2.829
D
MG
204
G
MG
MG
1_555
D
C
47
B
O2
C
22
1_555
metalc
3.033
D
MG
204
G
MG
MG
1_555
D
U
48
B
O4'
U
23
1_555
metalc
2.499
D
MG
204
G
MG
MG
1_555
D
C
38
B
O2'
C
13
1_555
metalc
2.348
D
K
205
H
K
K
1_555
D
HOH
221
L
O
HOH
1_555
metalc
3.390
D
K
205
H
K
K
1_555
D
U
32
B
O4
U
7
1_555
hydrog
WATSON-CRICK
C
G
26
A
N1
G
1
1_555
C
C
58
A
N3
C
33
1_555
hydrog
WATSON-CRICK
C
G
26
A
N2
G
1
1_555
C
C
58
A
O2
C
33
1_555
hydrog
WATSON-CRICK
C
G
26
A
O6
G
1
1_555
C
C
58
A
N4
C
33
1_555
hydrog
WATSON-CRICK
C
G
27
A
N1
G
2
1_555
C
C
57
A
N3
C
32
1_555
hydrog
WATSON-CRICK
C
G
27
A
N2
G
2
1_555
C
C
57
A
O2
C
32
1_555
hydrog
WATSON-CRICK
C
G
27
A
O6
G
2
1_555
C
C
57
A
N4
C
32
1_555
hydrog
WATSON-CRICK
C
C
28
A
N3
C
3
1_555
C
G
56
A
N1
G
31
1_555
hydrog
WATSON-CRICK
C
C
28
A
N4
C
3
1_555
C
G
56
A
O6
G
31
1_555
hydrog
WATSON-CRICK
C
C
28
A
O2
C
3
1_555
C
G
56
A
N2
G
31
1_555
hydrog
WATSON-CRICK
C
A
29
A
N1
A
4
1_555
C
U
55
A
N3
U
30
1_555
hydrog
WATSON-CRICK
C
A
29
A
N6
A
4
1_555
C
U
55
A
O4
U
30
1_555
hydrog
WATSON-CRICK
C
C
30
A
N3
C
5
1_555
C
G
54
A
N1
G
29
1_555
hydrog
WATSON-CRICK
C
C
30
A
N4
C
5
1_555
C
G
54
A
O6
G
29
1_555
hydrog
WATSON-CRICK
C
C
30
A
O2
C
5
1_555
C
G
54
A
N2
G
29
1_555
hydrog
WATSON-CRICK
C
C
31
A
N3
C
6
1_555
C
G
51
A
N1
G
26
1_555
hydrog
WATSON-CRICK
C
C
31
A
N4
C
6
1_555
C
G
51
A
O6
G
26
1_555
hydrog
WATSON-CRICK
C
C
31
A
O2
C
6
1_555
C
G
51
A
N2
G
26
1_555
hydrog
WATSON-CRICK
C
U
32
A
N3
U
7
1_555
C
A
50
A
N1
A
25
1_555
hydrog
WATSON-CRICK
C
U
32
A
O4
U
7
1_555
C
A
50
A
N6
A
25
1_555
hydrog
WATSON-CRICK
C
G
33
A
N1
G
8
1_555
C
C
49
A
N3
C
24
1_555
hydrog
WATSON-CRICK
C
G
33
A
N2
G
8
1_555
C
C
49
A
O2
C
24
1_555
hydrog
WATSON-CRICK
C
G
33
A
O6
G
8
1_555
C
C
49
A
N4
C
24
1_555
hydrog
WATSON-CRICK
C
A
34
A
N1
A
9
1_555
C
U
48
A
N3
U
23
1_555
hydrog
WATSON-CRICK
C
A
34
A
N6
A
9
1_555
C
U
48
A
O4
U
23
1_555
hydrog
C-C MISPAIR
C
C
36
A
N4
C
11
1_555
C
C
49
A
O2
C
24
1_555
hydrog
C-U MISPAIR
C
C
37
A
N4
C
12
1_555
C
U
48
A
O2
U
23
1_555
hydrog
WATSON-CRICK
C
C
38
A
N3
C
13
1_555
C
G
44
A
N1
G
19
1_555
hydrog
WATSON-CRICK
C
C
38
A
N4
C
13
1_555
C
G
44
A
O6
G
19
1_555
hydrog
WATSON-CRICK
C
C
38
A
O2
C
13
1_555
C
G
44
A
N2
G
19
1_555
hydrog
A-A MISPAIR
C
A
39
A
N3
A
14
1_555
C
A
46
A
N6
A
21
1_555
hydrog
U-A PAIR
C
U
40
A
O2
U
15
1_555
C
A
45
A
N6
A
20
1_555
hydrog
G-C PAIR
C
G
44
A
N2
G
19
1_555
C
C
47
A
N3
C
22
1_555
hydrog
WATSON-CRICK
D
G
26
B
N1
G
1
1_555
D
C
58
B
N3
C
33
1_555
hydrog
WATSON-CRICK
D
G
26
B
N2
G
1
1_555
D
C
58
B
O2
C
33
1_555
hydrog
WATSON-CRICK
D
G
26
B
O6
G
1
1_555
D
C
58
B
N4
C
33
1_555
hydrog
WATSON-CRICK
D
G
27
B
N1
G
2
1_555
D
C
57
B
N3
C
32
1_555
hydrog
WATSON-CRICK
D
G
27
B
N2
G
2
1_555
D
C
57
B
O2
C
32
1_555
hydrog
WATSON-CRICK
D
G
27
B
O6
G
2
1_555
D
C
57
B
N4
C
32
1_555
hydrog
WATSON-CRICK
D
C
28
B
N3
C
3
1_555
D
G
56
B
N1
G
31
1_555
hydrog
WATSON-CRICK
D
C
28
B
N4
C
3
1_555
D
G
56
B
O6
G
31
1_555
hydrog
WATSON-CRICK
D
C
28
B
O2
C
3
1_555
D
G
56
B
N2
G
31
1_555
hydrog
WATSON-CRICK
D
A
29
B
N1
A
4
1_555
D
U
55
B
N3
U
30
1_555
hydrog
WATSON-CRICK
D
A
29
B
N6
A
4
1_555
D
U
55
B
O4
U
30
1_555
hydrog
WATSON-CRICK
D
C
30
B
N3
C
5
1_555
D
G
54
B
N1
G
29
1_555
hydrog
WATSON-CRICK
D
C
30
B
N4
C
5
1_555
D
G
54
B
O6
G
29
1_555
hydrog
WATSON-CRICK
D
C
30
B
O2
C
5
1_555
D
G
54
B
N2
G
29
1_555
hydrog
WATSON-CRICK
D
C
31
B
N3
C
6
1_555
D
G
51
B
N1
G
26
1_555
hydrog
WATSON-CRICK
D
C
31
B
N4
C
6
1_555
D
G
51
B
O6
G
26
1_555
hydrog
WATSON-CRICK
D
C
31
B
O2
C
6
1_555
D
G
51
B
N2
G
26
1_555
hydrog
WATSON-CRICK
D
U
32
B
N3
U
7
1_555
D
A
50
B
N1
A
25
1_555
hydrog
WATSON-CRICK
D
U
32
B
O4
U
7
1_555
D
A
50
B
N6
A
25
1_555
hydrog
WATSON-CRICK
D
G
33
B
N1
G
8
1_555
D
C
49
B
N3
C
24
1_555
hydrog
WATSON-CRICK
D
G
33
B
N2
G
8
1_555
D
C
49
B
O2
C
24
1_555
hydrog
WATSON-CRICK
D
G
33
B
O6
G
8
1_555
D
C
49
B
N4
C
24
1_555
hydrog
WATSON-CRICK
D
A
34
B
N1
A
9
1_555
D
U
48
B
N3
U
23
1_555
hydrog
WATSON-CRICK
D
A
34
B
N6
A
9
1_555
D
U
48
B
O4
U
23
1_555
hydrog
C-C MISPAIR
D
C
36
B
N4
C
11
1_555
D
C
49
B
O2
C
24
1_555
hydrog
C-U MISPAIR
D
C
37
B
N4
C
12
1_555
D
U
48
B
O2
U
23
1_555
hydrog
WATSON-CRICK
D
C
38
B
N3
C
13
1_555
D
G
44
B
N1
G
19
1_555
hydrog
WATSON-CRICK
D
C
38
B
N4
C
13
1_555
D
G
44
B
O6
G
19
1_555
hydrog
WATSON-CRICK
D
C
38
B
O2
C
13
1_555
D
G
44
B
N2
G
19
1_555
hydrog
A-A MISPAIR
D
A
39
B
N3
A
14
1_555
D
A
46
B
N6
A
21
1_555
hydrog
U-A PAIR
D
U
40
B
O2
U
15
1_555
D
A
45
B
N6
A
20
1_555
hydrog
G-C PAIR
D
G
44
B
N2
G
19
1_555
D
C
47
B
N3
C
22
1_555
RIBOSOME
ribosomal protein - 5S rRNA complex, RIBOSOME
RL5_THETH
UNP
2
1
P41201
MPLDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNF
KLRKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVV
TTAETDEEARALLELLGFPFRK
1MJI
PDB
1
1MJI
1
182
1MJI
1
182
P41201
A
1
1
182
1
182
1MJI
1
182
P41201
B
1
1
182
26
59
1MJI
26
59
1MJI
C
2
1
34
26
59
1MJI
26
59
1MJI
D
2
1
34
1
MET
MODIFIED RESIDUE
MSE
99
1MJI
A
P41201
UNP
99
99
1
MET
MODIFIED RESIDUE
MSE
155
1MJI
A
P41201
UNP
155
155
2
MET
MODIFIED RESIDUE
MSE
99
1MJI
B
P41201
UNP
99
99
2
MET
MODIFIED RESIDUE
MSE
155
1MJI
B
P41201
UNP
155
155
5
2
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ALA
69
C
ALA
69
A
ARG
72
C
ARG
72
A
PRO
87
C
PRO
87
A
LEU
94
C
LEU
94
A
LEU
34
C
LEU
34
A
GLY
42
C
GLY
42
A
MSE
155
C
MSE
155
A
THR
161
C
THR
161
A
ASN
130
C
ASN
130
A
LEU
135
C
LEU
135
A
LEU
139
C
LEU
139
A
ILE
140
C
ILE
140
A
THR
145
C
THR
145
A
TYR
146
C
TYR
146
B
ALA
69
D
ALA
69
B
ARG
72
D
ARG
72
B
PRO
87
D
PRO
87
B
LEU
94
D
LEU
94
B
LEU
34
D
LEU
34
B
LEU
43
D
LEU
43
B
LEU
152
D
LEU
152
B
THR
161
D
THR
161
B
TYR
131
D
TYR
131
B
LEU
135
D
LEU
135
BINDING SITE FOR RESIDUE MG B 201
Software
5
BINDING SITE FOR RESIDUE MG A 202
Software
5
BINDING SITE FOR RESIDUE MG C 203
Software
4
BINDING SITE FOR RESIDUE MG D 204
Software
4
BINDING SITE FOR RESIDUE K D 205
Software
2
B
ARG
128
D
ARG
128
5
1_555
B
ASN
130
D
ASN
130
5
1_555
B
THR
161
D
THR
161
5
1_555
B
ALA
163
D
ALA
163
5
1_555
B
HOH
219
N
HOH
5
1_555
A
ARG
128
C
ARG
128
5
1_555
A
ASN
130
C
ASN
130
5
1_555
A
THR
161
C
THR
161
5
1_555
A
ALA
163
C
ALA
163
5
1_555
C
HOH
211
K
HOH
5
1_555
C
C
38
A
C
13
4
1_555
C
A
39
A
A
14
4
1_555
C
C
47
A
C
22
4
1_555
C
U
48
A
U
23
4
1_555
D
C
38
B
C
13
4
1_555
D
A
39
B
A
14
4
1_555
D
C
47
B
C
22
4
1_555
D
U
48
B
U
23
4
1_555
D
U
32
B
U
7
2
1_555
D
HOH
221
L
HOH
2
1_555
4
P 1 21 1