0.035436
0.000000
0.004508
0.000000
0.013250
0.000000
0.000000
0.000000
0.018288
0.00000
0.00000
0.00000
Muller, Y.A.
Heiring, C.
Misselwitz, R.
Welfle, K.
Welfle, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
97.25
90.00
28.220
75.470
55.120
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
277
43410
43416
10.1074/jbc.M206438200
12207021
The cystine knot promotes folding and not thermodynamic stability in vascular endothelial growth factor
2002
UK
Protein Eng.
PRENE9
0859
0269-2139
14
183
188
10.1093/protein/14.3.183
Folding Screening Assayed By Proteolysis: Application to Various Cystine Deletion Mutants of VasculaR
Endothelial Growth Factor
2001
10.2210/pdb1mkk/pdb
pdb_00001mkk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2002-08-05
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.8423
1.0
BW7B
EMBL/DESY, HAMBURG
0.8423
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE BW7B
11195.966
Vascular Endothelial Growth Factor A
Residues 40-134, sequence database
C61A,C104A
2
man
polymer
18.015
water
205
nat
water
VEGF-A, Vascular permeability factor, VPF
no
no
MVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCANDEGLECVPTEESNITMQIMRIKPHQGQHIG
EMSFLQHNKCEARPKK
MVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCANDEGLECVPTEESNITMQIMRIKPHQGQHIG
EMSFLQHNKCEARPKK
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
B843(DE3)pLysS
Plasmid
pET-3d
1
2.60
52.67
VAPOR DIFFUSION, HANGING DROP
5.6
isopropanol, PEG4000, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
software
database_2
diffrn_source
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
1
0
2002-12-11
1
1
2008-04-28
1
2
2011-07-13
1
3
2017-10-11
1
4
2021-10-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_struct_ref_seq_dif.details
Crystal structure of wild-type vascular endothelial growth factor
Disulfide Deficient Mutant of Vascular Endothelial Growth Factor A (C51A and C60A)
Disulfide Deficient Mutant of Vascular Endothelial Growth Factor A (C57A and C102A)
RCSB
Y
RCSB
2002-08-29
REL
REL
HOH
water
HOH
2
2
HOH
HOH
109
A
HOH
3
2
HOH
HOH
110
A
HOH
4
2
HOH
HOH
111
A
HOH
6
2
HOH
HOH
112
A
HOH
9
2
HOH
HOH
113
A
HOH
11
2
HOH
HOH
114
A
HOH
14
2
HOH
HOH
115
A
HOH
15
2
HOH
HOH
116
A
HOH
16
2
HOH
HOH
117
A
HOH
21
2
HOH
HOH
118
A
HOH
22
2
HOH
HOH
119
A
HOH
23
2
HOH
HOH
120
A
HOH
24
2
HOH
HOH
121
A
HOH
25
2
HOH
HOH
122
A
HOH
28
2
HOH
HOH
123
A
HOH
30
2
HOH
HOH
124
A
HOH
32
2
HOH
HOH
125
A
HOH
34
2
HOH
HOH
126
A
HOH
36
2
HOH
HOH
127
A
HOH
40
2
HOH
HOH
128
A
HOH
41
2
HOH
HOH
129
A
HOH
42
2
HOH
HOH
130
A
HOH
43
2
HOH
HOH
131
A
HOH
47
2
HOH
HOH
132
A
HOH
49
2
HOH
HOH
133
A
HOH
53
2
HOH
HOH
134
A
HOH
57
2
HOH
HOH
135
A
HOH
58
2
HOH
HOH
136
A
HOH
59
2
HOH
HOH
137
A
HOH
61
2
HOH
HOH
138
A
HOH
63
2
HOH
HOH
139
A
HOH
66
2
HOH
HOH
140
A
HOH
67
2
HOH
HOH
141
A
HOH
69
2
HOH
HOH
142
A
HOH
70
2
HOH
HOH
143
A
HOH
72
2
HOH
HOH
144
A
HOH
73
2
HOH
HOH
145
A
HOH
74
2
HOH
HOH
146
A
HOH
79
2
HOH
HOH
147
A
HOH
80
2
HOH
HOH
148
A
HOH
82
2
HOH
HOH
149
A
HOH
83
2
HOH
HOH
150
A
HOH
84
2
HOH
HOH
151
A
HOH
85
2
HOH
HOH
152
A
HOH
86
2
HOH
HOH
153
A
HOH
87
2
HOH
HOH
154
A
HOH
88
2
HOH
HOH
155
A
HOH
90
2
HOH
HOH
156
A
HOH
92
2
HOH
HOH
157
A
HOH
94
2
HOH
HOH
158
A
HOH
95
2
HOH
HOH
159
A
HOH
97
2
HOH
HOH
160
A
HOH
99
2
HOH
HOH
161
A
HOH
100
2
HOH
HOH
162
A
HOH
101
2
HOH
HOH
163
A
HOH
102
2
HOH
HOH
164
A
HOH
106
2
HOH
HOH
165
A
HOH
108
2
HOH
HOH
166
A
HOH
110
2
HOH
HOH
167
A
HOH
111
2
HOH
HOH
168
A
HOH
112
2
HOH
HOH
169
A
HOH
113
2
HOH
HOH
170
A
HOH
115
2
HOH
HOH
171
A
HOH
116
2
HOH
HOH
172
A
HOH
117
2
HOH
HOH
173
A
HOH
119
2
HOH
HOH
174
A
HOH
121
2
HOH
HOH
175
A
HOH
122
2
HOH
HOH
176
A
HOH
123
2
HOH
HOH
177
A
HOH
124
2
HOH
HOH
178
A
HOH
125
2
HOH
HOH
179
A
HOH
127
2
HOH
HOH
180
A
HOH
128
2
HOH
HOH
181
A
HOH
129
2
HOH
HOH
182
A
HOH
130
2
HOH
HOH
183
A
HOH
132
2
HOH
HOH
184
A
HOH
134
2
HOH
HOH
185
A
HOH
135
2
HOH
HOH
186
A
HOH
136
2
HOH
HOH
187
A
HOH
140
2
HOH
HOH
188
A
HOH
141
2
HOH
HOH
189
A
HOH
143
2
HOH
HOH
190
A
HOH
148
2
HOH
HOH
191
A
HOH
149
2
HOH
HOH
192
A
HOH
150
2
HOH
HOH
193
A
HOH
151
2
HOH
HOH
194
A
HOH
152
2
HOH
HOH
195
A
HOH
153
2
HOH
HOH
196
A
HOH
155
2
HOH
HOH
197
A
HOH
156
2
HOH
HOH
198
A
HOH
157
2
HOH
HOH
199
A
HOH
158
2
HOH
HOH
200
A
HOH
160
2
HOH
HOH
201
A
HOH
164
2
HOH
HOH
202
A
HOH
167
2
HOH
HOH
203
A
HOH
168
2
HOH
HOH
204
A
HOH
169
2
HOH
HOH
205
A
HOH
170
2
HOH
HOH
206
A
HOH
174
2
HOH
HOH
207
A
HOH
176
2
HOH
HOH
208
A
HOH
177
2
HOH
HOH
209
A
HOH
180
2
HOH
HOH
210
A
HOH
181
2
HOH
HOH
211
A
HOH
182
2
HOH
HOH
212
A
HOH
184
2
HOH
HOH
213
A
HOH
185
2
HOH
HOH
214
A
HOH
187
2
HOH
HOH
215
A
HOH
189
2
HOH
HOH
216
A
HOH
190
2
HOH
HOH
217
A
HOH
197
2
HOH
HOH
218
A
HOH
199
2
HOH
HOH
219
A
HOH
200
2
HOH
HOH
220
A
HOH
201
2
HOH
HOH
221
A
HOH
202
2
HOH
HOH
222
A
HOH
203
2
HOH
HOH
223
A
HOH
204
2
HOH
HOH
224
A
HOH
205
2
HOH
HOH
225
A
HOH
1
2
HOH
HOH
109
B
HOH
5
2
HOH
HOH
110
B
HOH
7
2
HOH
HOH
111
B
HOH
8
2
HOH
HOH
112
B
HOH
10
2
HOH
HOH
113
B
HOH
12
2
HOH
HOH
114
B
HOH
13
2
HOH
HOH
115
B
HOH
17
2
HOH
HOH
116
B
HOH
18
2
HOH
HOH
117
B
HOH
19
2
HOH
HOH
118
B
HOH
20
2
HOH
HOH
119
B
HOH
26
2
HOH
HOH
120
B
HOH
27
2
HOH
HOH
121
B
HOH
29
2
HOH
HOH
122
B
HOH
31
2
HOH
HOH
123
B
HOH
33
2
HOH
HOH
124
B
HOH
35
2
HOH
HOH
125
B
HOH
37
2
HOH
HOH
126
B
HOH
38
2
HOH
HOH
127
B
HOH
39
2
HOH
HOH
128
B
HOH
44
2
HOH
HOH
129
B
HOH
45
2
HOH
HOH
130
B
HOH
46
2
HOH
HOH
131
B
HOH
48
2
HOH
HOH
132
B
HOH
50
2
HOH
HOH
133
B
HOH
51
2
HOH
HOH
134
B
HOH
52
2
HOH
HOH
135
B
HOH
54
2
HOH
HOH
136
B
HOH
55
2
HOH
HOH
137
B
HOH
56
2
HOH
HOH
138
B
HOH
60
2
HOH
HOH
139
B
HOH
62
2
HOH
HOH
140
B
HOH
64
2
HOH
HOH
141
B
HOH
65
2
HOH
HOH
142
B
HOH
68
2
HOH
HOH
143
B
HOH
71
2
HOH
HOH
144
B
HOH
75
2
HOH
HOH
145
B
HOH
76
2
HOH
HOH
146
B
HOH
77
2
HOH
HOH
147
B
HOH
78
2
HOH
HOH
148
B
HOH
81
2
HOH
HOH
149
B
HOH
89
2
HOH
HOH
150
B
HOH
91
2
HOH
HOH
151
B
HOH
93
2
HOH
HOH
152
B
HOH
96
2
HOH
HOH
153
B
HOH
98
2
HOH
HOH
154
B
HOH
103
2
HOH
HOH
155
B
HOH
104
2
HOH
HOH
156
B
HOH
105
2
HOH
HOH
157
B
HOH
107
2
HOH
HOH
158
B
HOH
109
2
HOH
HOH
159
B
HOH
114
2
HOH
HOH
160
B
HOH
118
2
HOH
HOH
161
B
HOH
120
2
HOH
HOH
162
B
HOH
126
2
HOH
HOH
163
B
HOH
131
2
HOH
HOH
164
B
HOH
133
2
HOH
HOH
165
B
HOH
137
2
HOH
HOH
166
B
HOH
138
2
HOH
HOH
167
B
HOH
139
2
HOH
HOH
168
B
HOH
142
2
HOH
HOH
169
B
HOH
144
2
HOH
HOH
170
B
HOH
145
2
HOH
HOH
171
B
HOH
146
2
HOH
HOH
172
B
HOH
147
2
HOH
HOH
173
B
HOH
154
2
HOH
HOH
174
B
HOH
159
2
HOH
HOH
175
B
HOH
161
2
HOH
HOH
176
B
HOH
162
2
HOH
HOH
177
B
HOH
163
2
HOH
HOH
178
B
HOH
165
2
HOH
HOH
179
B
HOH
166
2
HOH
HOH
180
B
HOH
171
2
HOH
HOH
181
B
HOH
172
2
HOH
HOH
182
B
HOH
173
2
HOH
HOH
183
B
HOH
175
2
HOH
HOH
184
B
HOH
178
2
HOH
HOH
185
B
HOH
179
2
HOH
HOH
186
B
HOH
183
2
HOH
HOH
187
B
HOH
186
2
HOH
HOH
188
B
HOH
188
2
HOH
HOH
189
B
HOH
191
2
HOH
HOH
190
B
HOH
192
2
HOH
HOH
191
B
HOH
193
2
HOH
HOH
192
B
HOH
194
2
HOH
HOH
193
B
HOH
195
2
HOH
HOH
194
B
HOH
196
2
HOH
HOH
195
B
HOH
198
2
HOH
HOH
196
B
n
1
13
A
VAL
14
n
2
VAL
14
A
VAL
15
n
3
VAL
15
A
LYS
16
n
4
LYS
16
A
PHE
17
n
5
PHE
17
A
MET
18
n
6
MET
18
A
ASP
19
n
7
ASP
19
A
VAL
20
n
8
VAL
20
A
TYR
21
n
9
TYR
21
A
GLN
22
n
10
GLN
22
A
ARG
23
n
11
ARG
23
A
SER
24
n
12
SER
24
A
TYR
25
n
13
TYR
25
A
CYS
26
n
14
CYS
26
A
HIS
27
n
15
HIS
27
A
PRO
28
n
16
PRO
28
A
ILE
29
n
17
ILE
29
A
GLU
30
n
18
GLU
30
A
THR
31
n
19
THR
31
A
LEU
32
n
20
LEU
32
A
VAL
33
n
21
VAL
33
A
ASP
34
n
22
ASP
34
A
ILE
35
n
23
ILE
35
A
PHE
36
n
24
PHE
36
A
GLN
37
n
25
GLN
37
A
GLU
38
n
26
GLU
38
A
TYR
39
n
27
TYR
39
A
PRO
40
n
28
PRO
40
A
ASP
41
n
29
ASP
41
A
GLU
42
n
30
GLU
42
A
ILE
43
n
31
ILE
43
A
GLU
44
n
32
GLU
44
A
TYR
45
n
33
TYR
45
A
ILE
46
n
34
ILE
46
A
PHE
47
n
35
PHE
47
A
LYS
48
n
36
LYS
48
A
PRO
49
n
37
PRO
49
A
SER
50
n
38
SER
50
A
CYS
51
n
39
CYS
51
A
VAL
52
n
40
VAL
52
A
PRO
53
n
41
PRO
53
A
LEU
54
n
42
LEU
54
A
MET
55
n
43
MET
55
A
ARG
56
n
44
ARG
56
A
CYS
57
n
45
CYS
57
A
GLY
58
n
46
GLY
58
A
GLY
59
n
47
GLY
59
A
CYS
60
n
48
CYS
60
A
ALA
61
n
49
ALA
61
A
ASN
62
n
50
ASN
62
A
ASP
63
n
51
ASP
63
A
GLU
64
n
52
GLU
64
A
GLY
65
n
53
GLY
65
A
LEU
66
n
54
LEU
66
A
GLU
67
n
55
GLU
67
A
CYS
68
n
56
CYS
68
A
VAL
69
n
57
VAL
69
A
PRO
70
n
58
PRO
70
A
THR
71
n
59
THR
71
A
GLU
72
n
60
GLU
72
A
GLU
73
n
61
GLU
73
A
SER
74
n
62
SER
74
A
ASN
75
n
63
ASN
75
A
ILE
76
n
64
ILE
76
A
THR
77
n
65
THR
77
A
MET
78
n
66
MET
78
A
GLN
79
n
67
GLN
79
A
ILE
80
n
68
ILE
80
A
MET
81
n
69
MET
81
A
ARG
82
n
70
ARG
82
A
ILE
83
n
71
ILE
83
A
LYS
84
n
72
LYS
84
A
PRO
85
n
73
PRO
85
A
HIS
86
n
74
HIS
86
A
GLN
87
n
75
GLN
87
A
GLY
88
n
76
GLY
88
A
GLN
89
n
77
GLN
89
A
HIS
90
n
78
HIS
90
A
ILE
91
n
79
ILE
91
A
GLY
92
n
80
GLY
92
A
GLU
93
n
81
GLU
93
A
MET
94
n
82
MET
94
A
SER
95
n
83
SER
95
A
PHE
96
n
84
PHE
96
A
LEU
97
n
85
LEU
97
A
GLN
98
n
86
GLN
98
A
HIS
99
n
87
HIS
99
A
ASN
100
n
88
ASN
100
A
LYS
101
n
89
LYS
101
A
CYS
102
n
90
CYS
102
A
GLU
103
n
91
GLU
103
A
ALA
104
n
92
ALA
104
A
ARG
105
n
93
ARG
105
A
PRO
106
n
94
PRO
106
A
n
95
107
A
n
96
108
A
MET
13
n
1
MET
13
B
VAL
14
n
2
VAL
14
B
VAL
15
n
3
VAL
15
B
LYS
16
n
4
LYS
16
B
PHE
17
n
5
PHE
17
B
MET
18
n
6
MET
18
B
ASP
19
n
7
ASP
19
B
VAL
20
n
8
VAL
20
B
TYR
21
n
9
TYR
21
B
GLN
22
n
10
GLN
22
B
ARG
23
n
11
ARG
23
B
SER
24
n
12
SER
24
B
TYR
25
n
13
TYR
25
B
CYS
26
n
14
CYS
26
B
HIS
27
n
15
HIS
27
B
PRO
28
n
16
PRO
28
B
ILE
29
n
17
ILE
29
B
GLU
30
n
18
GLU
30
B
THR
31
n
19
THR
31
B
LEU
32
n
20
LEU
32
B
VAL
33
n
21
VAL
33
B
ASP
34
n
22
ASP
34
B
ILE
35
n
23
ILE
35
B
PHE
36
n
24
PHE
36
B
GLN
37
n
25
GLN
37
B
GLU
38
n
26
GLU
38
B
TYR
39
n
27
TYR
39
B
PRO
40
n
28
PRO
40
B
ASP
41
n
29
ASP
41
B
GLU
42
n
30
GLU
42
B
ILE
43
n
31
ILE
43
B
GLU
44
n
32
GLU
44
B
TYR
45
n
33
TYR
45
B
ILE
46
n
34
ILE
46
B
PHE
47
n
35
PHE
47
B
LYS
48
n
36
LYS
48
B
PRO
49
n
37
PRO
49
B
SER
50
n
38
SER
50
B
CYS
51
n
39
CYS
51
B
VAL
52
n
40
VAL
52
B
PRO
53
n
41
PRO
53
B
LEU
54
n
42
LEU
54
B
MET
55
n
43
MET
55
B
ARG
56
n
44
ARG
56
B
CYS
57
n
45
CYS
57
B
GLY
58
n
46
GLY
58
B
GLY
59
n
47
GLY
59
B
CYS
60
n
48
CYS
60
B
ALA
61
n
49
ALA
61
B
ASN
62
n
50
ASN
62
B
ASP
63
n
51
ASP
63
B
GLU
64
n
52
GLU
64
B
GLY
65
n
53
GLY
65
B
LEU
66
n
54
LEU
66
B
GLU
67
n
55
GLU
67
B
CYS
68
n
56
CYS
68
B
VAL
69
n
57
VAL
69
B
PRO
70
n
58
PRO
70
B
THR
71
n
59
THR
71
B
GLU
72
n
60
GLU
72
B
GLU
73
n
61
GLU
73
B
SER
74
n
62
SER
74
B
ASN
75
n
63
ASN
75
B
ILE
76
n
64
ILE
76
B
THR
77
n
65
THR
77
B
MET
78
n
66
MET
78
B
GLN
79
n
67
GLN
79
B
ILE
80
n
68
ILE
80
B
MET
81
n
69
MET
81
B
ARG
82
n
70
ARG
82
B
ILE
83
n
71
ILE
83
B
LYS
84
n
72
LYS
84
B
PRO
85
n
73
PRO
85
B
HIS
86
n
74
HIS
86
B
GLN
87
n
75
GLN
87
B
GLY
88
n
76
GLY
88
B
GLN
89
n
77
GLN
89
B
HIS
90
n
78
HIS
90
B
ILE
91
n
79
ILE
91
B
GLY
92
n
80
GLY
92
B
GLU
93
n
81
GLU
93
B
MET
94
n
82
MET
94
B
SER
95
n
83
SER
95
B
PHE
96
n
84
PHE
96
B
LEU
97
n
85
LEU
97
B
GLN
98
n
86
GLN
98
B
HIS
99
n
87
HIS
99
B
ASN
100
n
88
ASN
100
B
LYS
101
n
89
LYS
101
B
CYS
102
n
90
CYS
102
B
GLU
103
n
91
GLU
103
B
ALA
104
n
92
ALA
104
B
ARG
105
n
93
ARG
105
B
PRO
106
n
94
PRO
106
B
n
95
107
B
n
96
108
B
author_and_software_defined_assembly
PISA
2
dimeric
2560
-25
11370
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
33
A
N
VAL
21
A
O
VAL
52
A
O
VAL
40
A
O
ARG
105
A
O
ARG
93
A
N
GLU
67
A
N
GLU
55
A
O
MET
81
A
O
MET
69
A
N
LYS
48
A
N
LYS
36
A
O
ARG
105
A
O
ARG
93
A
N
GLU
67
A
N
GLU
55
A
N
THR
77
A
N
THR
65
B
O
VAL
15
B
O
VAL
3
B
N
THR
31
B
N
THR
19
B
O
LEU
54
B
O
LEU
42
B
N
ILE
46
B
N
ILE
34
B
O
ILE
83
B
O
ILE
71
B
N
GLU
67
B
N
GLU
55
B
O
ARG
105
B
O
ARG
93
1
B
CG
MET
13
B
CG
MET
1
1
Y
1
B
SD
MET
13
B
SD
MET
1
1
Y
1
B
CE
MET
13
B
CE
MET
1
1
Y
1
A
MET
13
A
MET
1
1
Y
1
A
LYS
107
A
LYS
95
1
Y
1
A
LYS
108
A
LYS
96
1
Y
1
B
LYS
107
B
LYS
95
1
Y
1
B
LYS
108
B
LYS
96
1
Y
1
A
A
OE1
O
GLU
HOH
38
121
2.02
1
7.16
1.10
114.20
121.36
B
B
B
CA
CB
SG
CYS
CYS
CYS
26
26
26
B
B
N
1
A
CYS
26
-27.53
118.71
1
B
CYS
26
-28.87
117.09
1
B
GLU
42
-118.14
51.62
1
B
PRO
85
-26.27
-59.15
19.583
1.32
0.00
0.03
-0.86
0.00
-0.46
0.19515
0.16543
0.16836
0.16836
1.32
28.00
5264
53318
53318
9.9
100.0
2.05958
0.04509
Resolution shells
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
0.08290
0.07326
0.80
0.80
1.40
PDB ENTRY 2VPF
Engh & Huber
BABINET'S PRINCIPLE
1.32
28.00
205
1733
0
0
1528
1.403
1.971
0.011
0.021
4.432
3.000
17.099
15.000
0.090
0.200
0.006
0.020
2.959
4.000
4.298
6.000
4.722
7.000
6.790
9.000
2.331
4.000
13.105
7.000
7.144
7.000
22.06
1.32
28.00
1MKK
53321
53321
0.00
-3.00
0.074
1
12.08
3.8
99.2
0.375
1.32
1.35
2.48
3498
3.17
99.5
data collection
MAR345
data reduction
XDS
phasing
AMoRE
refinement
REFMAC
5.0
data scaling
XDS
Disulfide deficient mutant of vascular endothelial growth factor A (C61A and C104A)
1
N
N
1
N
N
2
N
N
2
N
N
A
LYS
16
A
LYS
4
HELX_P
A
TYR
25
A
TYR
13
1
1
10
A
ILE
35
A
ILE
23
HELX_P
A
TYR
39
A
TYR
27
1
2
5
A
PRO
40
A
PRO
28
HELX_P
A
ILE
43
A
ILE
31
5
3
4
B
LYS
16
B
LYS
4
HELX_P
B
TYR
25
B
TYR
13
1
4
10
B
ILE
35
B
ILE
23
HELX_P
B
TYR
39
B
TYR
27
1
5
5
disulf
2.027
A
A
A
CYS
26
A
SG
CYS
14
1_555
A
CYS
68
A
SG
CYS
56
1_555
disulf
2.027
B
B
A
CYS
26
A
SG
CYS
14
1_555
A
CYS
68
A
SG
CYS
56
1_555
disulf
2.050
A
CYS
51
A
SG
CYS
39
1_555
B
CYS
60
B
SG
CYS
48
1_555
disulf
2.037
A
CYS
57
A
SG
CYS
45
1_555
A
CYS
102
A
SG
CYS
90
1_555
disulf
2.057
A
CYS
60
A
SG
CYS
48
1_555
B
CYS
51
B
SG
CYS
39
1_555
disulf
2.028
A
A
B
CYS
26
B
SG
CYS
14
1_555
B
CYS
68
B
SG
CYS
56
1_555
disulf
2.029
B
B
B
CYS
26
B
SG
CYS
14
1_555
B
CYS
68
B
SG
CYS
56
1_555
disulf
2.024
B
CYS
57
B
SG
CYS
45
1_555
B
CYS
102
B
SG
CYS
90
1_555
HORMONE/GROWTH FACTOR
Cystine-knot growth factor, HORMONE-GROWTH FACTOR COMPLEX
A
LYS
48
A
LYS
36
1
A
PRO
49
A
PRO
37
-8.08
B
LYS
48
B
LYS
36
1
B
PRO
49
B
PRO
37
-8.30
VEGFA_HUMAN
UNP
1
40
P15692
VVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGE
MSFLQHNKCECRPKK
40
134
1MKK
14
108
P15692
A
1
2
96
40
134
1MKK
14
108
P15692
B
1
2
96
1
cloning artifact
MET
13
1MKK
A
P15692
UNP
1
1
CYS
engineered mutation
ALA
61
1MKK
A
P15692
UNP
87
49
1
CYS
engineered mutation
ALA
104
1MKK
A
P15692
UNP
130
92
2
cloning artifact
MET
13
1MKK
B
P15692
UNP
1
2
CYS
engineered mutation
ALA
61
1MKK
B
P15692
UNP
87
49
2
CYS
engineered mutation
ALA
104
1MKK
B
P15692
UNP
130
92
2
3
3
2
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
HIS
27
A
HIS
15
A
ASP
34
A
ASP
22
A
CYS
51
A
CYS
39
A
GLY
58
A
GLY
46
A
HIS
90
A
HIS
78
A
ARG
105
A
ARG
93
A
GLU
67
A
GLU
55
A
ILE
83
A
ILE
71
A
ILE
46
A
ILE
34
A
LYS
48
A
LYS
36
A
HIS
90
A
HIS
78
A
ARG
105
A
ARG
93
A
GLU
67
A
GLU
55
A
ILE
83
A
ILE
71
B
VAL
14
B
VAL
2
B
VAL
15
B
VAL
3
B
HIS
27
B
HIS
15
B
ASP
34
B
ASP
22
B
CYS
51
B
CYS
39
B
GLY
58
B
GLY
46
B
ILE
46
B
ILE
34
B
LYS
48
B
LYS
36
B
GLU
67
B
GLU
55
B
ILE
83
B
ILE
71
B
HIS
90
B
HIS
78
B
ARG
105
B
ARG
93
4
P 1 21 1